LICENSE
MANIFEST.in
README.md
plantcv-train.py
plantcv-utils.py
plantcv-workflow.py
requirements.txt
setup.cfg
setup.py
versioneer.py
plantcv/__init__.py
plantcv.egg-info/PKG-INFO
plantcv.egg-info/SOURCES.txt
plantcv.egg-info/dependency_links.txt
plantcv.egg-info/requires.txt
plantcv.egg-info/top_level.txt
plantcv/learn/__init__.py
plantcv/learn/naive_bayes.py
plantcv/parallel/__init__.py
plantcv/parallel/job_builder.py
plantcv/parallel/multiprocess.py
plantcv/parallel/parsers.py
plantcv/parallel/process_results.py
plantcv/plantcv/__init__.py
plantcv/plantcv/_debug.py
plantcv/plantcv/_version.py
plantcv/plantcv/acute.py
plantcv/plantcv/acute_vertex.py
plantcv/plantcv/analyze_bound_horizontal.py
plantcv/plantcv/analyze_bound_vertical.py
plantcv/plantcv/analyze_color.py
plantcv/plantcv/analyze_nir_intensity.py
plantcv/plantcv/analyze_object.py
plantcv/plantcv/analyze_thermal_values.py
plantcv/plantcv/apply_mask.py
plantcv/plantcv/auto_crop.py
plantcv/plantcv/background_subtraction.py
plantcv/plantcv/canny_edge_detect.py
plantcv/plantcv/classes.py
plantcv/plantcv/closing.py
plantcv/plantcv/cluster_contour_mask.py
plantcv/plantcv/cluster_contour_splitimg.py
plantcv/plantcv/cluster_contours.py
plantcv/plantcv/color_palette.py
plantcv/plantcv/crop.py
plantcv/plantcv/crop_position_mask.py
plantcv/plantcv/deprecation_warning.py
plantcv/plantcv/dilate.py
plantcv/plantcv/distance_transform.py
plantcv/plantcv/erode.py
plantcv/plantcv/fatal_error.py
plantcv/plantcv/fill.py
plantcv/plantcv/fill_holes.py
plantcv/plantcv/find_objects.py
plantcv/plantcv/flip.py
plantcv/plantcv/gaussian_blur.py
plantcv/plantcv/get_kernel.py
plantcv/plantcv/get_nir.py
plantcv/plantcv/hist_equalization.py
plantcv/plantcv/image_add.py
plantcv/plantcv/image_fusion.py
plantcv/plantcv/image_subtract.py
plantcv/plantcv/invert.py
plantcv/plantcv/landmark_reference_pt_dist.py
plantcv/plantcv/laplace_filter.py
plantcv/plantcv/logical_and.py
plantcv/plantcv/logical_or.py
plantcv/plantcv/logical_xor.py
plantcv/plantcv/median_blur.py
plantcv/plantcv/naive_bayes_classifier.py
plantcv/plantcv/object_composition.py
plantcv/plantcv/opening.py
plantcv/plantcv/output_mask_ori_img.py
plantcv/plantcv/plot_image.py
plantcv/plantcv/print_image.py
plantcv/plantcv/print_results.py
plantcv/plantcv/readbayer.py
plantcv/plantcv/readimage.py
plantcv/plantcv/rectangle_mask.py
plantcv/plantcv/report_size_marker_area.py
plantcv/plantcv/rgb2gray.py
plantcv/plantcv/rgb2gray_cmyk.py
plantcv/plantcv/rgb2gray_hsv.py
plantcv/plantcv/rgb2gray_lab.py
plantcv/plantcv/roi_objects.py
plantcv/plantcv/rotate.py
plantcv/plantcv/scale_features.py
plantcv/plantcv/scharr_filter.py
plantcv/plantcv/shift_img.py
plantcv/plantcv/sobel_filter.py
plantcv/plantcv/spatial_clustering.py
plantcv/plantcv/stdev_filter.py
plantcv/plantcv/watershed.py
plantcv/plantcv/white_balance.py
plantcv/plantcv/within_frame.py
plantcv/plantcv/x_axis_pseudolandmarks.py
plantcv/plantcv/y_axis_pseudolandmarks.py
plantcv/plantcv/hyperspectral/__init__.py
plantcv/plantcv/hyperspectral/_avg_reflectance.py
plantcv/plantcv/hyperspectral/_inverse_covariance.py
plantcv/plantcv/hyperspectral/analyze_index.py
plantcv/plantcv/hyperspectral/analyze_spectral.py
plantcv/plantcv/hyperspectral/calibrate.py
plantcv/plantcv/hyperspectral/extract_wavelength.py
plantcv/plantcv/hyperspectral/read_data.py
plantcv/plantcv/morphology/__init__.py
plantcv/plantcv/morphology/_iterative_prune.py
plantcv/plantcv/morphology/analyze_stem.py
plantcv/plantcv/morphology/check_cycles.py
plantcv/plantcv/morphology/fill_segments.py
plantcv/plantcv/morphology/find_branch_pts.py
plantcv/plantcv/morphology/find_tips.py
plantcv/plantcv/morphology/prune.py
plantcv/plantcv/morphology/segment_angle.py
plantcv/plantcv/morphology/segment_combine.py
plantcv/plantcv/morphology/segment_curvature.py
plantcv/plantcv/morphology/segment_euclidean_length.py
plantcv/plantcv/morphology/segment_id.py
plantcv/plantcv/morphology/segment_insertion_angle.py
plantcv/plantcv/morphology/segment_path_length.py
plantcv/plantcv/morphology/segment_skeleton.py
plantcv/plantcv/morphology/segment_sort.py
plantcv/plantcv/morphology/segment_tangent_angle.py
plantcv/plantcv/morphology/skeletonize.py
plantcv/plantcv/photosynthesis/__init__.py
plantcv/plantcv/photosynthesis/analyze_fvfm.py
plantcv/plantcv/photosynthesis/read_cropreporter.py
plantcv/plantcv/roi/__init__.py
plantcv/plantcv/roi/roi2mask.py
plantcv/plantcv/roi/roi_methods.py
plantcv/plantcv/spectral_index/__init__.py
plantcv/plantcv/spectral_index/spectral_index.py
plantcv/plantcv/threshold/__init__.py
plantcv/plantcv/threshold/threshold_methods.py
plantcv/plantcv/transform/__init__.py
plantcv/plantcv/transform/color_correction.py
plantcv/plantcv/transform/gamma_correct.py
plantcv/plantcv/transform/nonuniform_illumination.py
plantcv/plantcv/transform/rescale.py
plantcv/plantcv/transform/resize.py
plantcv/plantcv/transform/rotate.py
plantcv/plantcv/transform/warp.py
plantcv/plantcv/visualize/__init__.py
plantcv/plantcv/visualize/auto_threshold_methods.py
plantcv/plantcv/visualize/clustered_contours.py
plantcv/plantcv/visualize/colorize_label_img.py
plantcv/plantcv/visualize/colorize_masks.py
plantcv/plantcv/visualize/colorspaces.py
plantcv/plantcv/visualize/histogram.py
plantcv/plantcv/visualize/hyper_histogram.py
plantcv/plantcv/visualize/obj_size_ecdf.py
plantcv/plantcv/visualize/obj_sizes.py
plantcv/plantcv/visualize/overlay_two_imgs.py
plantcv/plantcv/visualize/pseudocolor.py
plantcv/utils/__init__.py
plantcv/utils/converters.py
plantcv/utils/sample_images.py
tests/__init__.py
tests/conftest.py
tests/tests.py
tests/learn/__init__.py
tests/learn/conftest.py
tests/learn/test_naive_bayes.py
tests/parallel/__init__.py
tests/parallel/conftest.py
tests/parallel/test_job_builder.py
tests/parallel/test_multiprocess.py
tests/parallel/test_parsers.py
tests/parallel/test_process_results.py
tests/parallel/test_workflowconfig.py
tests/plantcv/__init__.py
tests/plantcv/test_acute.py
tests/plantcv/test_acute_vertex.py
tests/plantcv/test_analyze_bound_horizontal.py
tests/plantcv/test_analyze_bound_vertical.py
tests/plantcv/test_analyze_color.py
tests/plantcv/test_analyze_nir_intensity.py
tests/plantcv/test_analyze_object.py
tests/plantcv/test_analyze_thermal_values.py
tests/plantcv/test_apply_mask.py
tests/plantcv/test_auto_crop.py
tests/plantcv/test_background_subtraction.py
tests/plantcv/test_canny_edge_detect.py
tests/plantcv/test_closing.py
tests/plantcv/test_cluster_contour_splitimg.py
tests/plantcv/test_cluster_contours.py
tests/plantcv/test_color_palette.py
tests/plantcv/test_crop.py
tests/plantcv/test_crop_position_mask.py
tests/plantcv/test_debug.py
tests/plantcv/test_dilate.py
tests/plantcv/test_distance_transform.py
tests/plantcv/test_erode.py
tests/plantcv/test_fatal_error.py
tests/plantcv/test_fill.py
tests/plantcv/test_fill_holes.py
tests/plantcv/test_find_objects.py
tests/plantcv/test_flip.py
tests/plantcv/test_gaussian_blur.py
tests/plantcv/test_get_kernel.py
tests/plantcv/test_get_nir.py
tests/plantcv/test_hist_equalization.py
tests/plantcv/test_image_add.py
tests/plantcv/test_image_fusion.py
tests/plantcv/test_image_subtract.py
tests/plantcv/test_invert.py
tests/plantcv/test_landmark_reference_pt_dist.py
tests/plantcv/test_laplace_filter.py
tests/plantcv/test_logical_and.py
tests/plantcv/test_logical_or.py
tests/plantcv/test_logical_xor.py
tests/plantcv/test_median_blur.py
tests/plantcv/test_naive_bayes_classifier.py
tests/plantcv/test_object_composition.py
tests/plantcv/test_opening.py
tests/plantcv/test_output_mask.py
tests/plantcv/test_outputs.py
tests/plantcv/test_plot_image.py
tests/plantcv/test_print_image.py
tests/plantcv/test_print_results.py
tests/plantcv/test_readbayer.py
tests/plantcv/test_readimage.py
tests/plantcv/test_rectangle_mask.py
tests/plantcv/test_report_size_marker.py
tests/plantcv/test_rgb2gray.py
tests/plantcv/test_rgb2gray_cmyk.py
tests/plantcv/test_rgb2gray_hsv.py
tests/plantcv/test_rgb2gray_lab.py
tests/plantcv/test_roi_objects.py
tests/plantcv/test_rotate.py
tests/plantcv/test_scale_features.py
tests/plantcv/test_scharr_filter.py
tests/plantcv/test_shift_img.py
tests/plantcv/test_sobel_filter.py
tests/plantcv/test_spatial_clustering.py
tests/plantcv/test_stdev_filter.py
tests/plantcv/test_watershed_segmentation.py
tests/plantcv/test_white_balance.py
tests/plantcv/test_within_frame.py
tests/plantcv/test_x_axis_pseudolandmarks.py
tests/plantcv/test_y_axis_pseudolandmarks.py
tests/plantcv/annotate/__init__.py
tests/plantcv/annotate/conftest.py
tests/plantcv/homology/__init__.py
tests/plantcv/homology/conftest.py
tests/plantcv/hyperspectral/__init__.py
tests/plantcv/hyperspectral/conftest.py
tests/plantcv/hyperspectral/test_analyze_index.py
tests/plantcv/hyperspectral/test_analyze_spectral.py
tests/plantcv/hyperspectral/test_avg_reflectance.py
tests/plantcv/hyperspectral/test_calibrate.py
tests/plantcv/hyperspectral/test_extract_wavelength.py
tests/plantcv/hyperspectral/test_inverse_covariance.py
tests/plantcv/hyperspectral/test_read_data.py
tests/plantcv/morphology/__init__.py
tests/plantcv/morphology/conftest.py
tests/plantcv/morphology/test_analyze_stem.py
tests/plantcv/morphology/test_check_cycles.py
tests/plantcv/morphology/test_fill_segments.py
tests/plantcv/morphology/test_find_branch_pts.py
tests/plantcv/morphology/test_find_tips.py
tests/plantcv/morphology/test_prune.py
tests/plantcv/morphology/test_segment_angle.py
tests/plantcv/morphology/test_segment_combine.py
tests/plantcv/morphology/test_segment_curvature.py
tests/plantcv/morphology/test_segment_euclidean_length.py
tests/plantcv/morphology/test_segment_id.py
tests/plantcv/morphology/test_segment_insertion_angle.py
tests/plantcv/morphology/test_segment_path_length.py
tests/plantcv/morphology/test_segment_skeleton.py
tests/plantcv/morphology/test_segment_sort.py
tests/plantcv/morphology/test_segment_tangent_angle.py
tests/plantcv/morphology/test_skeletonize.py
tests/plantcv/photosynthesis/__init__.py
tests/plantcv/photosynthesis/conftest.py
tests/plantcv/photosynthesis/test_analyze_fvfm.py
tests/plantcv/photosynthesis/test_read_cropreporter.py
tests/plantcv/roi/__init__.py
tests/plantcv/roi/conftest.py
tests/plantcv/roi/test_roi.py
tests/plantcv/roi/test_roi2mask.py
tests/plantcv/spectral_index/__init__.py
tests/plantcv/spectral_index/conftest.py
tests/plantcv/spectral_index/test_spectral_index.py
tests/plantcv/threshold/__init__.py
tests/plantcv/threshold/conftest.py
tests/plantcv/threshold/test_threshold_methods.py
tests/plantcv/transform/__init__.py
tests/plantcv/transform/conftest.py
tests/plantcv/transform/test_color_correction.py
tests/plantcv/transform/test_gamma_correct.py
tests/plantcv/transform/test_nonuniform_illumination.py
tests/plantcv/transform/test_rescale.py
tests/plantcv/transform/test_resize.py
tests/plantcv/transform/test_rotate.py
tests/plantcv/transform/test_warp.py
tests/plantcv/visualize/__init__.py
tests/plantcv/visualize/conftest.py
tests/plantcv/visualize/test_auto_threshold_methods.py
tests/plantcv/visualize/test_clustered_contours.py
tests/plantcv/visualize/test_colorize_label_img.py
tests/plantcv/visualize/test_colorize_masks.py
tests/plantcv/visualize/test_colorspaces.py
tests/plantcv/visualize/test_histogram.py
tests/plantcv/visualize/test_hyper_histogram.py
tests/plantcv/visualize/test_obj_size_ecdf.py
tests/plantcv/visualize/test_obj_sizes.py
tests/plantcv/visualize/test_overlay_two_imgs.py
tests/plantcv/visualize/test_pseudocolor.py
tests/utils/__init__.py
tests/utils/conftest.py
tests/utils/test_json2csv.py
tests/utils/test_sample_images.py
tests/utils/test_tabulate_bayes_classes.py