Metadata-Version: 2.1
Name: aiv
Version: 0.3.26
Summary: A variant annotation package
Home-page: https://github.com/nesegunes/aiv
Author: tardis
Author-email: nesegunes.ce@gmail.com
License: UNKNOWN
Description: [![PyPI](https://img.shields.io/pypi/v/aiv)](https://pypi.org/project/aiv/)  [![GitHub](https://img.shields.io/github/license/nesegunes/aiv)](https://pypi.org/project/aiv/)
        
        ## AIV: Annotation of Identified Variants
        
        Annotation of Identified Variants to Create Reports for Clinicians to Assist Therapeutic Decisions
        
        ## Prerequisites
        
        It requires three main modules: pandas, myvariant and reportlab
        
        ```
        pip install pandas
        pip install myvariant
        pip install reportlab
        ```
        
        ## Installation
        
        ```
        pip install aiv
        ```
        
        ## Upgrade
        
        ```
        pip install aiv --upgrade
        ```
        
        ## Usage
        
        ```javascript
        import aiv
        
        # Get variant info 
        aiv.getvariant('chr1', 69635, 'G', 'C')
        
        
        # Annotate variants
        aiv.annotate_mutations('variant_calls.tsv')
        ```
        
        ## Report Preview
        
        ![Output file](https://github.com/nesegunes/aiv/blob/master/images/report.png?raw=true)
        
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Requires-Python: >=3.6
Description-Content-Type: text/markdown
