.coveragerc
.flake8
.gitignore
.readthedocs.yml
.travis.yml
AUTHORS.rst
LICENSE
MANIFEST.in
README.md
doc8.ini
setup.cfg
setup.py
tox.ini
docs/Makefile
docs/source/algorithm.rst
docs/source/api.rst
docs/source/cli.rst
docs/source/conf.py
docs/source/constants.rst
docs/source/formats.rst
docs/source/index.rst
docs/source/installation.rst
docs/source/performance.rst
docs/source/meta/logo.jpg
docs/source/meta/logo1.jpg
docs/source/meta/logo2.jpg
examples/README.md
examples/custom_network_run.sh
examples/example_pathway_analysis.sh
examples/openbiolink_network_run.sh
src/drug2ways/__init__.py
src/drug2ways/__main__.py
src/drug2ways/alternative_graph_traversal.py
src/drug2ways/bel_helper.py
src/drug2ways/cli.py
src/drug2ways/cli_helper.py
src/drug2ways/constants.py
src/drug2ways/graph_processing.py
src/drug2ways/graph_reader.py
src/drug2ways/graph_traversal.py
src/drug2ways/pathway.py
src/drug2ways/permute.py
src/drug2ways/rcr.py
src/drug2ways/wrapper.py
src/drug2ways.egg-info/PKG-INFO
src/drug2ways.egg-info/SOURCES.txt
src/drug2ways.egg-info/dependency_links.txt
src/drug2ways.egg-info/entry_points.txt
src/drug2ways.egg-info/not-zip-safe
src/drug2ways.egg-info/requires.txt
src/drug2ways.egg-info/top_level.txt
tests/__init__.py
tests/constants.py
tests/test_paths.py
tests/test_rcr.py
tests/test_reader.py
tests/resources/graph.csv
tests/resources/rcr_graph.csv
tests/resources/sources.txt
tests/resources/targets.txt