LICENSE
MANIFEST.in
README.md
setup.py
nanome_jax.egg-info/PKG-INFO
nanome_jax.egg-info/SOURCES.txt
nanome_jax.egg-info/dependency_links.txt
nanome_jax.egg-info/requires.txt
nanome_jax.egg-info/top_level.txt
src/nanome/__init__.py
src/nanome/common/__init__.py
src/nanome/common/eval_common.py
src/nanome/common/global_config.py
src/nanome/common/global_settings.py
src/nanome/common/nanome_genome_annotation.csv
src/nanome/nanocompare/__init__.py
src/nanome/nanocompare/benchmarkingDataConstruct.py
src/nanome/nanocompare/computeRawReadsCoverage.py
src/nanome/nanocompare/cov_accuracy_eval.py
src/nanome/nanocompare/nanome_tool.py
src/nanome/nanocompare/newtool_parser.py
src/nanome/nanocompare/pcc_region_eval.py
src/nanome/nanocompare/plot_figure.py
src/nanome/nanocompare/read_level_eval.py
src/nanome/nanocompare/region_intersect.py
src/nanome/nanocompare/site_level_eval.py
src/nanome/nanocompare/tss_eval.py
src/nanome/nanocompare/report/__init__.py
src/nanome/nanocompare/report/gen_html_report.py
src/nanome/nanocompare/report/gen_txt_readme.py
src/nanome/nanocompare/utils/__init__.py
src/nanome/nanocompare/utils/combine_output_na12878.py
src/nanome/nanocompare/utils/distribution_influnce_genomic_context.py
src/nanome/nanocompare/utils/meth_stats_tool.py
src/nanome/nanocompare/utils/nanopore_data_longread_portion_stats.py
src/nanome/nanocompare/utils/parse_urls_input_na12878.py
src/nanome/nanocompare/utils/sanity_5hmc/__init__.py
src/nanome/nanocompare/utils/sanity_5hmc/sanity_check_5hmc.py
src/nanome/other/__init__.py
src/nanome/other/phasing/__init__.py
src/nanome/other/phasing/hp_split.py
src/nanome/other/phasing/mega_parser.py
src/nanome/xgboost/__init__.py
src/nanome/xgboost/xgboost_common.py
src/nanome/xgboost/xgboost_eval.py
src/nanome/xgboost/xgboost_predict.py
src/nanome/xgboost/xgboost_prepdata.py
src/nanome/xgboost/xgboost_train.py
src/nanome/xgboost/trained_model/NANOME_NA12878_train1.0_megalodon_deepsignal_XGBoostNA2T_model.pkl
src/nanome/xgboost/trained_model/NANOME_NA12878_train1.0_nanopolish_megalodon_deepsignal_XGBoostNA3T_niter10_model.pkl
utils/FilesSeparator.py
utils/clean_old_basecall_in_fast5.py
utils/combination_model_prediction.py
utils/extract_methylation_fast5_support_dir.py
utils/getGuppyVersion.py
utils/hm_cluster_predict.py
utils/sum_chr_mod.py
utils/tombo_extract_per_read_stats.py
utils/unify_format_for_calls.sh
utils/validate_nanome_container.sh