LICENSE
MANIFEST.in
README.md
setup.cfg
setup.py
PhyloSuite/NEWS_version.md
PhyloSuite/PhyloSuite.py
PhyloSuite/__init__.py
PhyloSuite/style.qss
PhyloSuite.egg-info/PKG-INFO
PhyloSuite.egg-info/SOURCES.txt
PhyloSuite.egg-info/dependency_links.txt
PhyloSuite.egg-info/entry_points.txt
PhyloSuite.egg-info/requires.txt
PhyloSuite.egg-info/top_level.txt
PhyloSuite/citation/PhyloSuite_citation.enw
PhyloSuite/citation/PhyloSuite_citation.ris
PhyloSuite/citation/PhyloSuite_citation.xml
PhyloSuite/citation/PhyloSuite_citation_imeta.enw
PhyloSuite/citation/PhyloSuite_citation_imeta.ris
PhyloSuite/citation/PhyloSuite_citation_imeta.xml
PhyloSuite/ete3/__init__.py
PhyloSuite/ete3/_ph.py
PhyloSuite/ete3/citation.py
PhyloSuite/ete3/utils.py
PhyloSuite/ete3/version.py
PhyloSuite/ete3/clustering/__init__.py
PhyloSuite/ete3/clustering/clustertree.py
PhyloSuite/ete3/clustering/clustvalidation.py
PhyloSuite/ete3/coretype/__init__.py
PhyloSuite/ete3/coretype/arraytable.py
PhyloSuite/ete3/coretype/seqgroup.py
PhyloSuite/ete3/coretype/tree.py
PhyloSuite/ete3/evol/__init__.py
PhyloSuite/ete3/evol/control.py
PhyloSuite/ete3/evol/evoltree.py
PhyloSuite/ete3/evol/model.py
PhyloSuite/ete3/evol/utils.py
PhyloSuite/ete3/evol/parser/__init__.py
PhyloSuite/ete3/evol/parser/codemlparser.py
PhyloSuite/ete3/evol/parser/slrparser.py
PhyloSuite/ete3/ncbi_taxonomy/__init__.py
PhyloSuite/ete3/ncbi_taxonomy/ncbiquery.py
PhyloSuite/ete3/nexml/__init__.py
PhyloSuite/ete3/nexml/_nexml.py
PhyloSuite/ete3/nexml/_nexml_tree.py
PhyloSuite/ete3/orthoxml/__init__.py
PhyloSuite/ete3/orthoxml/_orthoxml.py
PhyloSuite/ete3/parser/__init__.py
PhyloSuite/ete3/parser/fasta.py
PhyloSuite/ete3/parser/newick.py
PhyloSuite/ete3/parser/paml.py
PhyloSuite/ete3/parser/phylip.py
PhyloSuite/ete3/parser/text_arraytable.py
PhyloSuite/ete3/phylo/__init__.py
PhyloSuite/ete3/phylo/evolevents.py
PhyloSuite/ete3/phylo/phylotree.py
PhyloSuite/ete3/phylo/reconciliation.py
PhyloSuite/ete3/phylo/spoverlap.py
PhyloSuite/ete3/phylomedb/__init__.py
PhyloSuite/ete3/phylomedb/phylomeDB.py
PhyloSuite/ete3/phylomedb/phylomeDB3.py
PhyloSuite/ete3/phyloxml/__init__.py
PhyloSuite/ete3/phyloxml/_phyloxml.py
PhyloSuite/ete3/phyloxml/_phyloxml_tree.py
PhyloSuite/ete3/test/__init__.py
PhyloSuite/ete3/test/common.py
PhyloSuite/ete3/test/datasets.py
PhyloSuite/ete3/test/ete.py
PhyloSuite/ete3/test/my_test.py
PhyloSuite/ete3/test/test_all.py
PhyloSuite/ete3/test/test_api.py
PhyloSuite/ete3/test/test_arraytable.py
PhyloSuite/ete3/test/test_circle_label.py
PhyloSuite/ete3/test/test_clustertree.py
PhyloSuite/ete3/test/test_compare_tree.py
PhyloSuite/ete3/test/test_ete_evol.py
PhyloSuite/ete3/test/test_evol.py
PhyloSuite/ete3/test/test_interop.py
PhyloSuite/ete3/test/test_ncbiquery.py
PhyloSuite/ete3/test/test_phylotree.py
PhyloSuite/ete3/test/test_seqgroup.py
PhyloSuite/ete3/test/test_tree.py
PhyloSuite/ete3/test/test_xml_parsers.py
PhyloSuite/ete3/test/tree_diff.py
PhyloSuite/ete3/test/test_ete_build/__init__.py
PhyloSuite/ete3/test/test_ete_build/__main__.py
PhyloSuite/ete3/test/test_ete_build/test_genetree.py
PhyloSuite/ete3/test/test_ete_build/test_manual_alg.py
PhyloSuite/ete3/test/test_ete_build/test_modeltest.py
PhyloSuite/ete3/test/test_ete_build/test_sptree.py
PhyloSuite/ete3/test/test_treeview/__init__.py
PhyloSuite/ete3/test/test_treeview/barchart_and_piechart_faces.py
PhyloSuite/ete3/test/test_treeview/bubble_map.py
PhyloSuite/ete3/test/test_treeview/face_grid.py
PhyloSuite/ete3/test/test_treeview/face_positions.py
PhyloSuite/ete3/test/test_treeview/face_rotation.py
PhyloSuite/ete3/test/test_treeview/floating_piecharts.py
PhyloSuite/ete3/test/test_treeview/img_faces.py
PhyloSuite/ete3/test/test_treeview/item_faces.py
PhyloSuite/ete3/test/test_treeview/new_seq_face.py
PhyloSuite/ete3/test/test_treeview/node_background.py
PhyloSuite/ete3/test/test_treeview/node_style.py
PhyloSuite/ete3/test/test_treeview/phylotree_visualization.py
PhyloSuite/ete3/test/test_treeview/random_draw.py
PhyloSuite/ete3/test/test_treeview/seq_motif_faces.py
PhyloSuite/ete3/test/test_treeview/test_all_treeview.py
PhyloSuite/ete3/test/test_treeview/tree_faces.py
PhyloSuite/ete3/test/test_treeview/tree_stacking.py
PhyloSuite/ete3/test/test_treeview/tree_stacking2.py
PhyloSuite/ete3/tools/__init__.py
PhyloSuite/ete3/tools/common.py
PhyloSuite/ete3/tools/ete.py
PhyloSuite/ete3/tools/ete_annotate.py
PhyloSuite/ete3/tools/ete_build.py
PhyloSuite/ete3/tools/ete_compare.py
PhyloSuite/ete3/tools/ete_evol.py
PhyloSuite/ete3/tools/ete_expand.py
PhyloSuite/ete3/tools/ete_extract.py
PhyloSuite/ete3/tools/ete_generate.py
PhyloSuite/ete3/tools/ete_maptrees.py
PhyloSuite/ete3/tools/ete_mod.py
PhyloSuite/ete3/tools/ete_ncbiquery.py
PhyloSuite/ete3/tools/ete_split.py
PhyloSuite/ete3/tools/ete_upgrade_tools.py
PhyloSuite/ete3/tools/ete_view.py
PhyloSuite/ete3/tools/utils.py
PhyloSuite/ete3/tools/ete_build_lib/__init__.py
PhyloSuite/ete3/tools/ete_build_lib/apps.py
PhyloSuite/ete3/tools/ete_build_lib/configcheck.py
PhyloSuite/ete3/tools/ete_build_lib/configobj.py
PhyloSuite/ete3/tools/ete_build_lib/curses_gui.py
PhyloSuite/ete3/tools/ete_build_lib/db.py
PhyloSuite/ete3/tools/ete_build_lib/errors.py
PhyloSuite/ete3/tools/ete_build_lib/getch.py
PhyloSuite/ete3/tools/ete_build_lib/interface.py
PhyloSuite/ete3/tools/ete_build_lib/logger.py
PhyloSuite/ete3/tools/ete_build_lib/master_job.py
PhyloSuite/ete3/tools/ete_build_lib/master_task.py
PhyloSuite/ete3/tools/ete_build_lib/ordereddict.py
PhyloSuite/ete3/tools/ete_build_lib/scheduler.py
PhyloSuite/ete3/tools/ete_build_lib/seqio.py
PhyloSuite/ete3/tools/ete_build_lib/sge.py
PhyloSuite/ete3/tools/ete_build_lib/utils.py
PhyloSuite/ete3/tools/ete_build_lib/validate.py
PhyloSuite/ete3/tools/ete_build_lib/visualize.py
PhyloSuite/ete3/tools/ete_build_lib/task/__init__.py
PhyloSuite/ete3/tools/ete_build_lib/task/clustalo.py
PhyloSuite/ete3/tools/ete_build_lib/task/cog_creator.py
PhyloSuite/ete3/tools/ete_build_lib/task/cog_selector.py
PhyloSuite/ete3/tools/ete_build_lib/task/concat_alg.py
PhyloSuite/ete3/tools/ete_build_lib/task/dialigntx.py
PhyloSuite/ete3/tools/ete_build_lib/task/dummyalg.py
PhyloSuite/ete3/tools/ete_build_lib/task/dummytree.py
PhyloSuite/ete3/tools/ete_build_lib/task/fasttree.py
PhyloSuite/ete3/tools/ete_build_lib/task/iqtree.py
PhyloSuite/ete3/tools/ete_build_lib/task/jmodeltest.py
PhyloSuite/ete3/tools/ete_build_lib/task/mafft.py
PhyloSuite/ete3/tools/ete_build_lib/task/merger.py
PhyloSuite/ete3/tools/ete_build_lib/task/meta_aligner.py
PhyloSuite/ete3/tools/ete_build_lib/task/msf.py
PhyloSuite/ete3/tools/ete_build_lib/task/muscle.py
PhyloSuite/ete3/tools/ete_build_lib/task/phyml.py
PhyloSuite/ete3/tools/ete_build_lib/task/pmodeltest.py
PhyloSuite/ete3/tools/ete_build_lib/task/prottest.py
PhyloSuite/ete3/tools/ete_build_lib/task/prottest2.py
PhyloSuite/ete3/tools/ete_build_lib/task/raxml.py
PhyloSuite/ete3/tools/ete_build_lib/task/tcoffee.py
PhyloSuite/ete3/tools/ete_build_lib/task/trimal.py
PhyloSuite/ete3/tools/ete_build_lib/task/uhire.py
PhyloSuite/ete3/tools/ete_build_lib/workflow/__init__.py
PhyloSuite/ete3/tools/ete_build_lib/workflow/common.py
PhyloSuite/ete3/tools/ete_build_lib/workflow/genetree.py
PhyloSuite/ete3/tools/ete_build_lib/workflow/supermatrix.py
PhyloSuite/ete3/treeview/CustomWidgets.py
PhyloSuite/ete3/treeview/Lg_attribute.py
PhyloSuite/ete3/treeview/Lg_compare_tree_setting.py
PhyloSuite/ete3/treeview/Ui_annotation_editor.py
PhyloSuite/ete3/treeview/Ui_annotation_editor2.py
PhyloSuite/ete3/treeview/Ui_annotation_editor3.py
PhyloSuite/ete3/treeview/Ui_annotation_editor_attr.py
PhyloSuite/ete3/treeview/Ui_annotation_editor_tax.py
PhyloSuite/ete3/treeview/Ui_annotation_selector.py
PhyloSuite/ete3/treeview/Ui_compare_setting.py
PhyloSuite/ete3/treeview/Ui_ete_qt4app.py
PhyloSuite/ete3/treeview/__init__.py
PhyloSuite/ete3/treeview/_about.py
PhyloSuite/ete3/treeview/_mainwindow.py
PhyloSuite/ete3/treeview/_open_newick.py
PhyloSuite/ete3/treeview/_search_dialog.py
PhyloSuite/ete3/treeview/_show_codeml.py
PhyloSuite/ete3/treeview/_show_newick.py
PhyloSuite/ete3/treeview/drawer.py
PhyloSuite/ete3/treeview/ete_resources_rc.py
PhyloSuite/ete3/treeview/faces.py
PhyloSuite/ete3/treeview/layouts.py
PhyloSuite/ete3/treeview/main.py
PhyloSuite/ete3/treeview/node_gui_actions.py
PhyloSuite/ete3/treeview/qt.py
PhyloSuite/ete3/treeview/qt4_circular_render.py
PhyloSuite/ete3/treeview/qt4_face_render.py
PhyloSuite/ete3/treeview/qt4_gui.py
PhyloSuite/ete3/treeview/qt4_rect_render.py
PhyloSuite/ete3/treeview/qt4_render.py
PhyloSuite/ete3/treeview/shape2fig.py
PhyloSuite/ete3/treeview/svg_colors.py
PhyloSuite/ete3/treeview/templates.py
PhyloSuite/ete3/webplugin/__init__.py
PhyloSuite/ete3/webplugin/webapp.py
PhyloSuite/manual/Manual.pdf
PhyloSuite/src/CustomWidget.py
PhyloSuite/src/LG_TreeSuite.py
PhyloSuite/src/LG_colorsets.py
PhyloSuite/src/Launcher.py
PhyloSuite/src/Lg_ASTRAL-old.py
PhyloSuite/src/Lg_ASTRAL.py
PhyloSuite/src/Lg_ClipQuery.py
PhyloSuite/src/Lg_Concatenate.py
PhyloSuite/src/Lg_ConvertFmt.py
PhyloSuite/src/Lg_FastTree.py
PhyloSuite/src/Lg_Gblocks.py
PhyloSuite/src/Lg_HmmCleaner.py
PhyloSuite/src/Lg_IQTREE.py
PhyloSuite/src/Lg_Manual_update.py
PhyloSuite/src/Lg_ModelFinder.py
PhyloSuite/src/Lg_Mrbayes.py
PhyloSuite/src/Lg_NCBI_DB.py
PhyloSuite/src/Lg_NmlPoPup.py
PhyloSuite/src/Lg_PartitionEditer.py
PhyloSuite/src/Lg_PartitionFinder.py
PhyloSuite/src/Lg_RSCUfig.py
PhyloSuite/src/Lg_SerhNCBI.py
PhyloSuite/src/Lg_addFiles.py
PhyloSuite/src/Lg_compareTable.py
PhyloSuite/src/Lg_displaySettings.py
PhyloSuite/src/Lg_drawGO.py
PhyloSuite/src/Lg_extractSettings.py
PhyloSuite/src/Lg_extracter.py
PhyloSuite/src/Lg_gbEditor.py
PhyloSuite/src/Lg_macse.py
PhyloSuite/src/Lg_mafft.py
PhyloSuite/src/Lg_parseANNT.py
PhyloSuite/src/Lg_seqViewer.py
PhyloSuite/src/Lg_settings.py
PhyloSuite/src/Lg_tiger.py
PhyloSuite/src/Lg_trimAl.py
PhyloSuite/src/Lg_workflow.py
PhyloSuite/src/__init__.py
PhyloSuite/src/codonusage.py
PhyloSuite/src/factory.py
PhyloSuite/src/findANDreplace.py
PhyloSuite/src/handleGB.py
PhyloSuite/src/main.py
PhyloSuite/src/plugins.py
PhyloSuite/src/preset_values.py
PhyloSuite/src/rscuStack.py
PhyloSuite/src/rscuSum.py
PhyloSuite/src/tiger_index.py
PhyloSuite/src/tiger_output.py
PhyloSuite/src/tiger_rate.py
PhyloSuite/src/update.py
PhyloSuite/tests/Test_run.pdf
PhyloSuite/tests/marine_turtle_mitogenomes.gb
PhyloSuite/uifiles/ASTRAL.ui
PhyloSuite/uifiles/Concatenate.ui
PhyloSuite/uifiles/ConvertFmt.ui
PhyloSuite/uifiles/FastTree.ui
PhyloSuite/uifiles/HmmCleaner.ui
PhyloSuite/uifiles/IQ_TREE.ui
PhyloSuite/uifiles/MACSE.ui
PhyloSuite/uifiles/MainWindow.ui
PhyloSuite/uifiles/Manual_update.ui
PhyloSuite/uifiles/ModelFinder.ui
PhyloSuite/uifiles/MrBayes.ui
PhyloSuite/uifiles/NCBI.ui
PhyloSuite/uifiles/NCBI_db.ui
PhyloSuite/uifiles/NmlPoPup.ui
PhyloSuite/uifiles/PF_exe_path.ui
PhyloSuite/uifiles/Plot_options.ui
PhyloSuite/uifiles/RSCUfig.ui
PhyloSuite/uifiles/SeqViewer.ui
PhyloSuite/uifiles/Tiger.ui
PhyloSuite/uifiles/TreeSuite.ui
PhyloSuite/uifiles/Ui_ASTRAL.py
PhyloSuite/uifiles/Ui_Concatenate.py
PhyloSuite/uifiles/Ui_ConvertFmt.py
PhyloSuite/uifiles/Ui_FastTree.py
PhyloSuite/uifiles/Ui_HmmCleaner.py
PhyloSuite/uifiles/Ui_IQ_TREE.py
PhyloSuite/uifiles/Ui_MACSE.py
PhyloSuite/uifiles/Ui_MainWindow - 副本.py
PhyloSuite/uifiles/Ui_MainWindow.py
PhyloSuite/uifiles/Ui_Manual_update.py
PhyloSuite/uifiles/Ui_ModelFinder.py
PhyloSuite/uifiles/Ui_MrBayes.py
PhyloSuite/uifiles/Ui_NCBI.py
PhyloSuite/uifiles/Ui_NCBI_db.py
PhyloSuite/uifiles/Ui_NmlPoPup.py
PhyloSuite/uifiles/Ui_PF_exe_path.py
PhyloSuite/uifiles/Ui_RSCUfig.py
PhyloSuite/uifiles/Ui_SeqViewer.py
PhyloSuite/uifiles/Ui_Tiger.py
PhyloSuite/uifiles/Ui_TreeSuite.py
PhyloSuite/uifiles/Ui_about.py
PhyloSuite/uifiles/Ui_addFile.py
PhyloSuite/uifiles/Ui_clipboard_query.py
PhyloSuite/uifiles/Ui_color_sets.py
PhyloSuite/uifiles/Ui_compareTable.py
PhyloSuite/uifiles/Ui_dirichlet_mrbayes.py
PhyloSuite/uifiles/Ui_display_setting.py
PhyloSuite/uifiles/Ui_drawGO.py
PhyloSuite/uifiles/Ui_exe_path.py
PhyloSuite/uifiles/Ui_extract_setting.py
PhyloSuite/uifiles/Ui_extracter.py
PhyloSuite/uifiles/Ui_gbEditor.py
PhyloSuite/uifiles/Ui_gblocks.py
PhyloSuite/uifiles/Ui_launcher.py
PhyloSuite/uifiles/Ui_mafft.py
PhyloSuite/uifiles/Ui_nexViewer.py
PhyloSuite/uifiles/Ui_notify.py
PhyloSuite/uifiles/Ui_parseANNT.py
PhyloSuite/uifiles/Ui_parseANNT_settings.py
PhyloSuite/uifiles/Ui_partition_defination.py
PhyloSuite/uifiles/Ui_partition_editor.py
PhyloSuite/uifiles/Ui_partitionfinder.py
PhyloSuite/uifiles/Ui_plot.py
PhyloSuite/uifiles/Ui_popUp.py
PhyloSuite/uifiles/Ui_seqViewSetting.py
PhyloSuite/uifiles/Ui_settings.py
PhyloSuite/uifiles/Ui_tRNA_reANNT.py
PhyloSuite/uifiles/Ui_trimAl.py
PhyloSuite/uifiles/Ui_untitled.py
PhyloSuite/uifiles/Ui_work_flow.py
PhyloSuite/uifiles/__init__.py
PhyloSuite/uifiles/about.ui
PhyloSuite/uifiles/addFile.ui
PhyloSuite/uifiles/authenticationdialog.ui
PhyloSuite/uifiles/clipboard_query.ui
PhyloSuite/uifiles/color_sets.ui
PhyloSuite/uifiles/compareTable.ui
PhyloSuite/uifiles/dirichlet_mrbayes.ui
PhyloSuite/uifiles/display_setting.ui
PhyloSuite/uifiles/drawGO.ui
PhyloSuite/uifiles/exe_path.ui
PhyloSuite/uifiles/extract_setting.ui
PhyloSuite/uifiles/extracter.ui
PhyloSuite/uifiles/gbEditor.ui
PhyloSuite/uifiles/gblocks.ui
PhyloSuite/uifiles/launcher.ui
PhyloSuite/uifiles/mafft.ui
PhyloSuite/uifiles/mergeGBfile.ui
PhyloSuite/uifiles/myRes_rc.py
PhyloSuite/uifiles/nexViewer.ui
PhyloSuite/uifiles/parseANNT.ui
PhyloSuite/uifiles/parseANNT_settings.ui
PhyloSuite/uifiles/partition_defination.ui
PhyloSuite/uifiles/partition_editor.ui
PhyloSuite/uifiles/partitionfinder.ui
PhyloSuite/uifiles/plot.ui
PhyloSuite/uifiles/popUp.ui
PhyloSuite/uifiles/seqViewSetting.ui
PhyloSuite/uifiles/settings.ui
PhyloSuite/uifiles/tRNA_reANNT.ui
PhyloSuite/uifiles/trimAl.ui
PhyloSuite/uifiles/untitled.ui
PhyloSuite/uifiles/work_flow.ui