Metadata-Version: 2.1
Name: poppunk
Version: 2.1.1
Summary: PopPUNK (POPulation Partitioning Using Nucleotide Kmers)
Home-page: https://github.com/johnlees/PopPUNK
Author: John Lees and Nicholas Croucher
Author-email: john@johnlees.me
License: Apache Software License
Description: # PopPUNK (POPulation Partitioning Using Nucleotide Kmers)
        
        [![Dev build Status](https://dev.azure.com/jlees/PopPUNK/_apis/build/status/johnlees.PopPUNK?branchName=master)](https://dev.azure.com/jlees/PopPUNK/_build/latest?definitionId=1&branchName=master)
        [![Documentation Status](https://readthedocs.org/projects/poppunk/badge/?version=latest)](https://poppunk.readthedocs.io/)
        [![Anaconda package](https://anaconda.org/bioconda/poppunk/badges/version.svg)](https://anaconda.org/bioconda/poppunk)
        [![PyPI version](https://badge.fury.io/py/poppunk.svg)](https://badge.fury.io/py/poppunk)
        
        See our website: <https://www.poppunk.net>
        
        ## Description
        
        See the [documentation](http://poppunk.readthedocs.io/en/latest/) and the
        [paper](https://doi.org/10.1101/gr.241455.118).
        
        If you find PopPUNK useful, please cite us:
        
        Lees JA, Harris SR, Tonkin-Hill G, Gladstone RA, Lo SW, Weiser JN, Corander J, Bentley SD, Croucher NJ.
        Fast and flexible bacterial genomic epidemiology with PopPUNK. *Genome Research* **29**:304-316 (2019).
        doi:[10.1101/gr.241455.118](https://doi.org/10.1101/gr.241455.118)
        
        ## Installation
        
        This is for the command line version. For more details see [installation](https://poppunk.readthedocs.io/en/latest/installation.html) in the documentation.
        
        There are other interfaces, in-browser and through galaxy, [detailed here](https://poppunk.net/pages/interfaces.html).
        
        ### Through conda (recommended)
        
        The easiest way is through conda, which is most easily accessed by first
        installing [miniconda](https://conda.io/miniconda.html). PopPUNK can then
        be installed by running:
        ```
        conda install poppunk
        ```
        If the package cannot be found you will need to add the necessary channels:
        ```
        conda config --add channels defaults
        conda config --add channels bioconda
        conda config --add channels conda-forge
        ```
        
        ## Quick usage
        
        See the [quickstart](https://poppunk.readthedocs.io/en/latest/quickstart.html) guide
        for a brief tutorial.
        
        
        
        
        
Keywords: bacteria genomics population-genetics k-mer
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Programming Language :: Python :: 3.8
Requires-Python: >=3.7.0
Description-Content-Type: text/markdown
