MANIFEST.in
README.md
setup.py
PopPUNK/__init__.py
PopPUNK/__main__.py
PopPUNK/bgmm.py
PopPUNK/dbscan.py
PopPUNK/lineage_clustering.py
PopPUNK/mash.py
PopPUNK/models.py
PopPUNK/network.py
PopPUNK/plot.py
PopPUNK/prune_db.py
PopPUNK/reference_pick.py
PopPUNK/refine.py
PopPUNK/sketchlib.py
PopPUNK/tsne.py
PopPUNK/utils.py
poppunk.egg-info/PKG-INFO
poppunk.egg-info/SOURCES.txt
poppunk.egg-info/dependency_links.txt
poppunk.egg-info/entry_points.txt
poppunk.egg-info/requires.txt
poppunk.egg-info/top_level.txt
scripts/poppunk_calculate_rand_indices.py
scripts/poppunk_calculate_silhouette.py
scripts/poppunk_extract_components.py
scripts/poppunk_extract_distances.py