.gitignore
.readthedocs.yml
.travis.yml
README.rst
pretrained.md
requirements.txt
setup.py
docs/Makefile
docs/about.rst
docs/conf.py
docs/index.rst
docs/installation.rst
docs/make.bat
docs/model_sharing.rst
docs/requirements.txt
docs/training_tips.rst
docs/_static/custom.css
docs/api/data.rst
docs/api/datasets.rst
docs/api/index.rst
docs/api/models.rst
docs/api/plotting.rst
docs/api/utils.rst
docs/api/zenodo.rst
notebooks/pancreas_pipeline.ipynb
notebooks/zenodo_intestine.ipynb
notebooks/zenodo_pancreas_from_pretrained.ipynb
notebooks/zenodo_pancreas_from_scratch.ipynb
scArches.egg-info/PKG-INFO
scArches.egg-info/SOURCES.txt
scArches.egg-info/dependency_links.txt
scArches.egg-info/not-zip-safe
scArches.egg-info/requires.txt
scArches.egg-info/top_level.txt
scarches/__init__.py
scarches/annotation.py
scarches/data.py
scarches/datasets.py
scarches/metrics.py
scarches/utils.py
scarches/models/__init__.py
scarches/models/_activations.py
scarches/models/_adaptor.py
scarches/models/_callbacks.py
scarches/models/_data_generator.py
scarches/models/_layers.py
scarches/models/_losses.py
scarches/models/_utils.py
scarches/models/cvae.py
scarches/models/scarches.py
scarches/models/scarchesnb.py
scarches/models/scarcheszinb.py
scarches/plotting/__init__.py
scarches/plotting/_alluvial.py
scarches/plotting/sankey.py
scarches/zenodo/__init__.py
scarches/zenodo/deposition.py
scarches/zenodo/file.py
scarches/zenodo/zip.py
tests/test_api.py
tests/test_pancreas.py