Metadata-Version: 2.1
Name: AnoPrimer
Version: 2.0.2
Summary: A package to design primers in Anopheles gambiae whilst considering genetic variation with malariagen_data
Home-page: https://github.com/sanjaynagi/anoprimer
License: MIT
Author: Sanjay Nagi
Author-email: sanjay.nagi@lstmed.ac.uk
Requires-Python: >=3.10,<3.12
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Requires-Dist: gget
Requires-Dist: kaleido
Requires-Dist: malariagen_data (>=10.0.0)
Requires-Dist: openpyxl
Requires-Dist: primer3-py (==2.0.0)
Requires-Dist: seaborn
Project-URL: Documentation, https://sanjaynagi.github.io/anoprimer/latest/
Project-URL: Repository, https://github.com/sanjaynagi/anoprimer
Description-Content-Type: text/markdown

<div align="center">

[<img src="https://github.com/sanjaynagi/AnoPrimer/blob/main/graphics/AnoPrimer_logo.png?raw=True" width="400"/>](https://github.com/sanjaynagi/AnoPrimer/blob/main/graphics/AnoPrimer_logo.png?raw=True)

[![DOI](https://zenodo.org/badge/503315581.svg)](https://zenodo.org/badge/latestdoi/503315581)
[![Execute notebooks](https://github.com/sanjaynagi/AnoPrimer/workflows/Execute%20notebooks/badge.svg)](https://github.com/sanjaynagi/AnoPrimer/actions?query=workflow:"Execute+notebook")
[![GitHub release](https://img.shields.io/github/release/sanjaynagi/AnoPrimer?include_prereleases=&sort=semver&color=blue)](https://github.com/sanjaynagi/AnoPrimer/releases/)
[![License](https://img.shields.io/badge/License-MIT-blue)](#license)
[![Twitter Follow](https://img.shields.io/twitter/follow/sanjay_c_nagi.svg?style=social)](https://twitter.com/sanjay_c_nagi)

</div>

Primer design in *Anopheles gambiae s.l* and *funestus* taking into account SNP variation in primer binding sites, using primer3-py and malariagen_data. Supports genomic DNA primers, cDNA primers and hybridisation probes:
<br/><br/>
<div align="center">

Documentation: https://sanjaynagi.github.io/AnoPrimer/

[![Custom badge](https://img.shields.io/endpoint?color=white&logo=Google%20Colab&url=https%3A%2F%2Fraw.githubusercontent.com%2Fsanjaynagi%2FAnoPrimer%2Fmain%2Fgraphics%2Fbadge.json)](https://colab.research.google.com/github/sanjaynagi/AnoPrimer/blob/main/notebooks/AnoPrimer-long.ipynb)

 [![Custom badge](https://img.shields.io/endpoint?color=red&logo=Google%20Colab&url=https%3A%2F%2Fraw.githubusercontent.com%2Fsanjaynagi%2FAnoPrimer%2Fmain%2Fgraphics%2Fbadge-short.json)](https://colab.research.google.com/github/sanjaynagi/AnoPrimer/blob/main/notebooks/AnoPrimer-short.ipynb)

</div>

