array_type	analysis_method	additional_algorithms	filter_probe_types	analyze_all_conditions	p_threshold	alt_exon_fold_cutoff	additional_score	permute_p_threshold	gene_expression_cutoff	remove_intronic_junctions	perform_permutation_analysis	export_splice_index_values	run_MiDAS	calculate_splicing_index_p	filter_for_AS
exon	splicing-index	NA	core	pairwise	0.05	2	NA	NA	3	NA	NA	yes	yes	yes	no
gene	splicing-index	NA	NA	pairwise	0.05	2	NA	NA	3	NA	NA	yes	yes	yes	no
3'array	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AltMouse	ASPIRE	NA	all	pairwise	0.05	0.2	NA	0.05	3	NA	no	yes	NA	NA	no
junction	ASPIRE	splicing-index	all	pairwise	0.05	0.2	2	0.05	3	NA	no	yes	yes	NA	no
RNASeq	MultiPath-PSI	none	all	pairwise	0.05	0.1	2	0.05	10	no	no	yes	no	NA	no