211	VB_Community_Symbol	\N	KNOWN	50	VB Community Symbol	MISC	\N	\N	\N
212	VB_External_Description	1	PRED	50	VB External Description	MISC	\N	\N	\N
213	VB_RNA_Description	1	PRED	50	VB RNA Description	MISC	\N	\N	\N
230	Ribosomal_Protein_Gene_Database	Dec.2010	XREF	50	Ribosomal Protein Gene DB	MISC	\N	\N	\N
250	ImmunoDB	1	KNOWN	50	ImmunoDB	MISC	\N	\N	\N
400	Celera_Gene	\N	PRED	5	Celera gene	MISC	\N	\N	\N
410	Celera_Pep	\N	PRED	5	Celera peptide	MISC	\N	\N	\N
420	Celera_Trans	\N	PRED	5	Celera transcript	MISC	\N	\N	\N
700	EMBL	\N	KNOWNXREF	5	European Nucleotide Archive	MISC	\N	\N	\N
701	EMBL_predicted	\N	PRED	119	Predicted European Nucleotide Archive	MISC	\N	\N	\N
800	flybase_gene_id	\N	KNOWNXREF	5	FlyBase gene	MISC	\N	\N	\N
801	flybase_translation_id	\N	KNOWNXREF	5	FlyBase translation	MISC	\N	\N	\N
804	flybase_annotation_id	\N	KNOWNXREF	5	FlyBase annotation	MISC	\N	\N	\N
805	flybase_symbol	\N	KNOWNXREF	50	FlyBase symbol	MISC	\N	\N	\N
808	flybase_transcript_id	\N	KNOWNXREF	299	FlyBase transcript	MISC	\N	\N	\N
812	gadfly_translation_cgid	\N	XREF	10	Gadfly translation CGID	MISC	\N	\N	\N
821	FlyBaseName_gene	\N	KNOWN	5	FlyBase gene name	PRIMARY_DB_SYNONYM	\N	\N	\N
824	FlyBaseName_translation	\N	KNOWN	5	FlyBase translation name	MISC	\N	\N	\N
825	FlyBaseName_transcript	\N	XREF	50	FlyBase transcript name	MISC	\N	\N	\N
826	FlyBaseCGID_gene	\N	XREF	5	FlyBase gene CGID	PRIMARY_DB_SYNONYM	\N	\N	\N
827	FlyBaseCGID_transcript	\N	XREF	50	FlyBase transcript CGID	MISC	\N	\N	\N
828	FlyBaseCGID_translation	\N	XREF	50	FlyBase translation CGID	MISC	\N	\N	\N
829	BioGRID	\N	KNOWNXREF	5	BioGRID Interaction data, The General Repository for Interaction Datasets	MISC	\N	\N	\N
831	GenomeRNAi	\N	KNOWNXREF	5	GenomeRNAi, a database for cell-based RNAi phenotypes	MISC	\N	\N	\N
832	InteractiveFly	\N	KNOWNXREF	5	The Interactive Fly	MISC	\N	\N	\N
833	MitoDrome	\N	KNOWNXREF	5	Nuclear genes encoding proteins targeted to the mitochondrion	MISC	\N	\N	\N
883	FlyReactome	\N	KNOWNXREF	5	FlyReactome, a Curated Knowledgebase of Drosophila Melanogaster Pathways	MISC	\N	\N	\N
1000	GO	\N	XREF	5	GO	MISC	\N	\N	\N
1001	GO_REF	\N	KNOWN	5	GO Reference Collection	LIT	\N	\N	\N
1100	HGNC	\N	KNOWNXREF	100	HGNC Symbol	PRIMARY_DB_SYNONYM	\N	\N	\N
1200	Interpro	\N	XREF	5	InterPro	MISC	\N	\N	\N
1300	EntrezGene	\N	KNOWNXREF	250	NCBI gene	PRIMARY_DB_SYNONYM	\N	\N	\N
1400	MGI	\N	KNOWNXREF	270	MGI Symbol	PRIMARY_DB_SYNONYM	\N	\N	\N
1510	MIM_GENE	\N	KNOWNXREF	5	MIM gene	MISC	\N	\N	\N
1520	MIM_MORBID	\N	KNOWNXREF	150	MIM morbid	MISC	\N	\N	\N
1600	PDB	\N	KNOWNXREF	5	PDB	MISC	\N	\N	\N
1700	protein_id	\N	KNOWNXREF	5	INSDC protein ID	MISC	\N	\N	\N
1701	protein_id_predicted	\N	PRED	4	Predicted INSDC Protein ID	MISC	\N	\N	\N
1800	RefSeq_dna	\N	KNOWN	200	RefSeq DNA	MISC	\N	\N	\N
1801	RefSeq_mRNA	NCBI Reference Sequence (RefSeq) Database Release 92, January 4, 2019	KNOWN	200	RefSeq mRNA	MISC	\N	\N	\N
1803	RefSeq_ncRNA	\N	KNOWN	200	RefSeq ncRNA	MISC	\N	\N	\N
1805	RefSeq_dna_predicted	\N	PRED	199	RefSeq DNA predicted	MISC	\N	\N	\N
1806	RefSeq_mRNA_predicted	NCBI Reference Sequence (RefSeq) Database Release 92, January 4, 2019	PRED	199	RefSeq mRNA predicted	MISC	\N	\N	\N
1808	RefSeq_ncRNA_predicted	NCBI Reference Sequence (RefSeq) Database Release 92, January 4, 2019	PRED	199	RefSeq ncRNA predicted	MISC	\N	\N	\N
1810	RefSeq_peptide	NCBI Reference Sequence (RefSeq) Database Release 92, January 4, 2019	KNOWN	210	RefSeq peptide	MISC	\N	\N	\N
1815	RefSeq_peptide_predicted	NCBI Reference Sequence (RefSeq) Database Release 92, January 4, 2019	PRED	197	RefSeq peptide predicted	MISC	\N	\N	\N
1820	RefSeq_rna	\N	KNOWN	230	RefSeq RNA	MISC	\N	\N	\N
1825	RefSeq_rna_predicted	\N	PRED	195	RefSeq RNA predicted	MISC	\N	\N	\N
1830	RefSeq_genomic	\N	KNOWN	193	RefSeq Genomic	MISC	\N	\N	This external_db_id can be used in the seq_region_synonym table. For species such as human, cow, dog we store chromosome names (1-22, X,Y) in the name column of the seq_region table. The RefSeq_genomic is stored as a synonym. eg. NC_000011.10, NT_187365.1
2000	Uniprot/SPTREMBL	UniProtKB/TrEMBL Release 2018_11 of 05-Dec-2018	KNOWN	119	UniProtKB/TrEMBL	MISC	\N	\N	\N
2200	Uniprot/SWISSPROT	UniProtKB/Swiss-Prot Release 2018_11 of 05-Dec-2018	KNOWN	220	UniProtKB/Swiss-Prot	MISC	\N	\N	\N
2202	Uniprot/Varsplic	\N	KNOWN	15	UniProtKB/SpliceVariant	MISC	\N	\N	\N
2250	UniProtKB_all	\N	XREF	40	UniProtKB generic accession number (TrEMBL or SwissProt not differentiated)	MISC	\N	\N	\N
2300	Vega_gene	\N	KNOWNXREF	5	Vega gene	MISC	\N	\N	\N
2310	Vega_transcript	\N	KNOWNXREF	160	Vega transcript	MISC	\N	\N	\N
2320	Vega_translation	\N	KNOWNXREF	5	Vega translation	MISC	\N	\N	\N
2400	wormbase_gene	\N	KNOWN	5	WormBase Gene	MISC	\N	\N	\N
2410	wormbase_transcript	\N	KNOWN	5	WormBase Transcript	MISC	\N	\N	\N
2420	wormpep_id	\N	KNOWN	5	Wormpep ID	MISC	\N	\N	\N
2440	wormbase_locus	\N	KNOWN	5	WormBase Locus	MISC	\N	\N	\N
2510	ZFIN_ID	\N	KNOWNXREF	260	ZFIN	PRIMARY_DB_SYNONYM	\N	\N	\N
2530	ZFIN_xpat	\N	KNOWNXREF	4	ZFIN expression patterns	MISC	\N	\N	\N
2600	GeneDB	\N	KNOWN	5	GeneDB	MISC	\N	\N	\N
2601	cint_jgi_v1	\N	KNOWN	10	JGI Gene ID (JGI 1.0)	MISC	\N	\N	\N
2602	cint_jgi_v2	\N	KNOWN	5	JGI Gene ID (JGI 2.0)	MISC	\N	\N	\N
2610	cint_aniseed_v1	\N	KNOWN	5	ANISEED (JGI 1.0)	MISC	\N	\N	\N
2611	cint_aniseed_v2	\N	KNOWN	5	ANISEED (JGI 2.0)	MISC	\N	\N	\N
2700	Ens_Hs_gene	\N	XREF	5	Ensembl Human Gene	MISC	\N	\N	\N
2710	Ens_Hs_transcript	\N	XREF	170	Ensembl Human Transcript	MISC	\N	\N	\N
2720	Ens_Hs_translation	\N	XREF	5	Ensembl Human Translation	MISC	\N	\N	\N
2800	RGD	\N	KNOWNXREF	50	RGD Symbol	PRIMARY_DB_SYNONYM	\N	\N	\N
2900	Genoscope_pred_gene	\N	XREF	38	Genoscope pred gene	MISC	\N	\N	\N
2910	Genoscope_pred_transcript	\N	XREF	39	Genoscope pred transcript	MISC	\N	\N	\N
2920	Genoscope_annotated_gene	\N	KNOWN	40	Genoscope annotated gene	MISC	\N	\N	\N
2930	Genoscope_pred_translation	\N	XREF	40	Genoscope pred translation	MISC	\N	\N	\N
2940	Genoscope_ann_transcript	\N	KNOWN	40	Genoscope annotated transcript	MISC	\N	\N	\N
2950	Genoscope_ann_translation	\N	KNOWN	40	Genoscope annotated translation	MISC	\N	\N	\N
3300	miRBase	\N	KNOWNXREF	180	miRBase	PRIMARY_DB_SYNONYM	\N	\N	\N
3400	SGD	\N	KNOWN	50	SGD	PRIMARY_DB_SYNONYM	\N	\N	\N
3500	IPI	\N	KNOWN	5	IPI	MISC	\N	\N	\N
3800	CCDS	\N	KNOWN	240	CCDS	MISC	\N	\N	\N
3900	PUBMED	\N	KNOWN	5	Sequence Publications	LIT	\N	\N	\N
4100	UniGene	\N	KNOWN	5	UniGene	MISC	\N	\N	\N
4200	RFAM	\N	XREF	190	RFAM	PRIMARY_DB_SYNONYM	\N	\N	\N
4400	Xenbase	\N	KNOWN	1	Xenbase	PRIMARY_DB_SYNONYM	\N	\N	\N
4600	OTTG	\N	XREF	1	Havana gene	ALT_GENE	\N	\N	\N
4610	OTTT	\N	XREF	1	Havana transcript	ALT_TRANS	\N	\N	\N
4620	OTTP	\N	XREF	1	Havana translation	MISC	\N	\N	\N
4670	shares_CDS_with_OTTT	\N	XREF	1	Havana transcript having same CDS	ALT_TRANS	\N	\N	\N
4680	shares_CDS_and_UTR_with_OTTT	\N	XREF	1	Transcript having exact match between ENSEMBL and HAVANA	ALT_TRANS	\N	\N	\N
4690	ENSG	\N	XREF	1	Ensembl gene	ALT_GENE	\N	\N	\N
4700	Medaka	\N	XREF	1	Medaka Genome Project	MISC	\N	\N	\N
4810	ENST_ident	\N	XREF	1	Ensembl transcript having exact match with Havana	ALT_TRANS	\N	\N	\N
4820	ENST_CDS	\N	XREF	1	Ensembl transcript sharing CDS with Havana	ALT_TRANS	\N	\N	\N
5010	Ens_Mm_transcript	\N	XREF	40	Ensembl Mouse Transcript	MISC	\N	\N	\N
5020	Ens_Mm_translation	\N	XREF	40	Ensembl Mouse Translation	MISC	\N	\N	\N
5100	IMGT_HLA	\N	KNOWN	7	IMGT/HLA	MISC	\N	\N	\N
5300	Oxford_FGU_Md_tscript	\N	PRED	1	Oxford Ponting Group Monodelphis predictions transcript id	MISC	\N	\N	Updated from alt_gene to misc due to user query
5400	Oxford_FGU_Oa_gene	\N	PRED	1	Oxford Ponting Group Platypus predictions gene id	MISC	\N	\N	Updated from alt_gene to misc due to user query
5500	Oxford_FGU_Oa_tscript	\N	PRED	1	Oxford Ponting Group Platypus predictions transcript id	MISC	\N	\N	\N
5720	Ens_Cf_translation	\N	XREF	5	Ensembl Dog Translation	MISC	\N	\N	\N
5810	Ens_Dr_transcript	\N	XREF	5	Ensembl Zebrafish Transcript	MISC	\N	\N	\N
5820	Ens_Dr_translation	\N	XREF	5	Ensembl Zebrafish Translation	MISC	\N	\N	\N
6400	Ens_Gg_gene	\N	XREF	40	Ensembl Chicken Gene	MISC	\N	\N	\N
6410	Ens_Gg_transcript	\N	XREF	40	Ensembl Chicken Transcript	MISC	\N	\N	\N
6420	Ens_Gg_translation	\N	XREF	40	Ensembl Chicken Translation	MISC	\N	\N	\N
6500	IMCB_Tr_gene	\N	XREF	40	IMCB Fugu Gene	MISC	\N	\N	\N
6820	Ens_Tr_transcript	\N	XREF	40	Ensembl Fugu Transcript	MISC	\N	\N	\N
6900	Ens_Ga_translation	\N	XREF	5	Ensembl Stickleback Translation	MISC	\N	\N	\N
7170	Ixodes_ManualAnnotation	\N	PRED	30	Ixodes ManualAnnotation	MISC	\N	\N	\N
7180	VB_Community_Annotation	1	KNOWN	50	VB Community Annotation	MISC	\N	\N	\N
7200	IMGT/LIGM_DB	\N	XREF	10	IMGT/LIGM-DB	MISC	\N	\N	\N
7201	IMGT/GENE_DB	\N	KNOWN	40	IMGT/GENE-DB	MISC	\N	\N	\N
7300	Ens_Mg_transcript	\N	XREF	40	Ensembl Turkey Transcript	MISC	\N	\N	\N
7400	Ens_Tg_transcript	\N	XREF	40	Ensembl Zebrafinch Transcript	MISC	\N	\N	\N
7620	Ens_Fc_translation	\N	XREF	40	Ensembl Cat Translation	MISC	\N	\N	\N
8100	Platypus_olfactory_receptor	\N	XREF	40	Platypus olfactory receptor gene	MISC	\N	\N	\N
8200	PRF	\N	XREF	5	PRF	MISC	\N	\N	\N
8300	PIR	\N	XREF	5	PIR	MISC	\N	\N	\N
8400	TetNig_cdna	\N	XREF	40	Genoscope tetraodon cDNA	MISC	\N	\N	\N
8500	GasAcu_cdna	\N	XREF	40	Stickleback cDNA	MISC	\N	\N	\N
8600	OrnAna_454_cdna	\N	XREF	40	Platypus 454 cDNA	MISC	\N	\N	\N
8700	TakRub_cdna	\N	XREF	40	Takifugu cDNA	MISC	\N	\N	\N
8800	CioInt_est	\N	XREF	40	Ciona intestinalis EST	MISC	\N	\N	\N
8900	CioInt_cdna	\N	XREF	40	Ciona intestinalis cDNA	MISC	\N	\N	\N
9200	TakRub_est	\N	XREF	40	Takifugu EST	MISC	\N	\N	\N
9400	TetNig_mouse_econtig	\N	XREF	40	Genoscope mouse exofish econtig	MISC	\N	\N	\N
9410	TetNig_fugu_econtig	\N	XREF	40	Genoscope fugu exofish econtig	MISC	\N	\N	\N
9420	TetNig_human_econtig	\N	XREF	40	Genoscope human exofish econtig	MISC	\N	\N	\N
9450	TetNig_rat_econtig	\N	XREF	40	Genoscope rat exofish econtig	MISC	\N	\N	\N
9460	TetNig_chick_econtig	\N	XREF	40	Genoscope chicken exofish econtig	MISC	\N	\N	\N
9500	OryLat_est	\N	XREF	40	Medaka EST	MISC	\N	\N	\N
9600	Trace_archive	\N	XREF	40	Trace Archive id	MISC	\N	\N	\N
9700	CioSav_est	\N	XREF	40	Ciona savignyi EST	MISC	\N	\N	\N
10000	wormbase_id	\N	XREF	30	Generic exdb for WormBase id of any type for feature table	MISC	\N	\N	\N
10100	EPD	\N	KNOWNXREF	5	Eukaryotic Promoter Database (Bucher)	MISC	\N	\N	\N
10300	MEROPS	\N	KNOWNXREF	5	MEROPS - the Peptidase Database	MISC	\N	\N	\N
10500	TransFac	\N	KNOWNXREF	5	TransFac, database of transcription factors and their binding sites	MISC	\N	\N	\N
11000	UCSC	\N	KNOWNXREF	100	UCSC Stable ID	MISC	\N	\N	\N
12310	Clone_based_vega_gene	\N	KNOWNXREF	5	Clone-based (Vega) gene	MISC	\N	\N	\N
12315	Clone_based_ensembl_gene	\N	XREF	5	Clone-based (Ensembl) gene	MISC	\N	\N	\N
12410	Clone_based_vega_transcript	\N	KNOWNXREF	5	Clone-based (Vega) transcript	MISC	\N	\N	\N
12415	Clone_based_ensembl_transcript	\N	XREF	5	Clone-based (Ensembl) transcript	MISC	\N	\N	\N
12500	DBASS3	\N	XREF	50	DataBase of Aberrant 3' Splice Sites	MISC	\N	\N	\N
12505	DBASS5	\N	XREF	50	DataBase of Aberrant 5' Splice Sites	MISC	\N	\N	\N
12510	HPA	\N	XREF	50	Human Protein Atlas	MISC	\N	\N	\N
12600	WikiGene	\N	XREF	50	WikiGene	MISC	\N	\N	\N
12601	Tgut_symbol	\N	KNOWNXREF	100	Tgut symbol - Prof. David Burt, Roslin Institute and Royal (Dick) School of Veterinary Studies, Edinburgh University, UK	PRIMARY_DB_SYNONYM	\N	\N	\N
12620	Duck_consortium	\N	XREF	0	Duck consortium	MISC	\N	\N	\N
12630	BGI_duck_transcriptome	\N	XREF	0	Beijing Genomics Institute (BGI) duck transcriptome	MISC	\N	\N	\N
12700	goslim_goa	\N	XREF	5	GOSlim GOA	MISC	\N	\N	\N
12710	WTSI_gorilla_transcriptome	\N	XREF	0	Wellcome Trust Sanger Institute (WTSI) gorilla transcriptome	MISC	\N	\N	\N
20005	UniParc	\N	KNOWNXREF	0	UniParc	PRIMARY_DB_SYNONYM	\N	\N	\N
20008	BRENDA	\N	KNOWNXREF	0	BRENDA	PRIMARY_DB_SYNONYM	\N	\N	\N
20009	BioCyc	\N	KNOWNXREF	0	BioCyc	PRIMARY_DB_SYNONYM	\N	\N	\N
20013	EchoBASE	\N	KNOWNXREF	0	EchoBASE	PRIMARY_DB_SYNONYM	\N	\N	\N
20014	EcoGene	\N	KNOWNXREF	0	EcoGene	PRIMARY_DB_SYNONYM	\N	\N	\N
20040	SubtiList	\N	KNOWNXREF	0	SubtiList	PRIMARY_DB_SYNONYM	\N	\N	\N
20043	TubercuList	\N	KNOWNXREF	0	TubercuList	PRIMARY_DB_SYNONYM	\N	\N	\N
20046	ArrayExpress	\N	XREF	0	Expression Atlas	MISC	\N	\N	\N
20059	DIP	\N	KNOWNXREF	0	DIP	PRIMARY_DB_SYNONYM	\N	\N	\N
20061	DisProt	\N	KNOWNXREF	0	DisProt	PRIMARY_DB_SYNONYM	\N	\N	\N
20062	DrugBank	\N	KNOWNXREF	0	DrugBank	PRIMARY_DB_SYNONYM	\N	\N	\N
20066	HAMAP	\N	KNOWNXREF	0	HAMAP	PRIMARY_DB_SYNONYM	\N	\N	\N
20071	HSSP	\N	KNOWNXREF	0	HSSP	PRIMARY_DB_SYNONYM	\N	\N	\N
20072	IntAct	\N	KNOWNXREF	0	IntAct	PRIMARY_DB_SYNONYM	\N	\N	\N
20074	KEGG	\N	KNOWNXREF	0	KEGG	PRIMARY_DB_SYNONYM	\N	\N	\N
20078	PDBsum	\N	KNOWNXREF	0	PDBsum	PRIMARY_DB_SYNONYM	\N	\N	\N
20082	PeroxiBase	\N	KNOWNXREF	0	PeroxiBase	PRIMARY_DB_SYNONYM	\N	\N	\N
20085	REBASE	\N	KNOWNXREF	0	REBASE	PRIMARY_DB_SYNONYM	\N	\N	\N
20088	Reactome	\N	KNOWNXREF	0	Reactome	PRIMARY_DB_SYNONYM	\N	\N	\N
20097	RegulonDb_Transcript	\N	KNOWNXREF	0	RegulonDb	PRIMARY_DB_SYNONYM	\N	\N	\N
20101	IntEnz	\N	KNOWNXREF	0	EnzymeCommission	PRIMARY_DB_SYNONYM	\N	\N	\N
20200	EMBLBANK_GENE	\N	KNOWNXREF	117	European Nucleotide Archive	PRIMARY_DB_SYNONYM	\N	\N	\N
20215	phatr_jgi_v2	\N	KNOWNXREF	0	JGI ID (JGI 2.0)	PRIMARY_DB_SYNONYM	\N	\N	\N
20216	phatr_jgi_v2_bd_gene	\N	KNOWNXREF	0	JGI Gene ID (JGI 2.0 unmapped sequence)	PRIMARY_DB_SYNONYM	\N	\N	\N
20217	phatr_jgi_v2_gene	\N	KNOWNXREF	0	JGI Gene ID (JGI 2.0)	PRIMARY_DB_SYNONYM	\N	\N	\N
20220	thaps_jgi_v2_bd	\N	KNOWNXREF	0	JGI ID (JGI 2.0 unmapped sequence)	PRIMARY_DB_SYNONYM	\N	\N	\N
20221	thaps_jgi_v2	\N	KNOWNXREF	0	JGI ID (JGI 2.0)	PRIMARY_DB_SYNONYM	\N	\N	\N
20228	CADRE_Afum_A1163	\N	KNOWNXREF	0	CADRE	PRIMARY_DB_SYNONYM	\N	\N	\N
20301	RNAMMER	\N	KNOWNXREF	0	RNAmmer	MISC	\N	\N	\N
20302	TRNASCAN_SE	\N	KNOWNXREF	0	tRNAScan-SE	MISC	\N	\N	\N
20303	dictyBase	\N	KNOWNXREF	0	DictyBase	PRIMARY_DB_SYNONYM	\N	\N	\N
20306	ASPGD	\N	KNOWNXREF	0	AspGD	PRIMARY_DB_SYNONYM	\N	\N	\N
20307	ASPGD_GENE	\N	KNOWNXREF	0	AspGD	PRIMARY_DB_SYNONYM	\N	\N	\N
20308	ASPGD_TRANSCRIPT	\N	KNOWNXREF	0	AspGD	PRIMARY_DB_SYNONYM	\N	\N	\N
20309	CADRE	\N	KNOWNXREF	0	CADRE	PRIMARY_DB_SYNONYM	\N	\N	\N
20310	CADRE_GENE	\N	KNOWNXREF	0	CADRE	PRIMARY_DB_SYNONYM	\N	\N	\N
20311	CADRE_TRANSCRIPT	\N	KNOWNXREF	0	CADRE	PRIMARY_DB_SYNONYM	\N	\N	\N
20312	SGD_GENE	\N	KNOWNXREF	0	SGD gene name	PRIMARY_DB_SYNONYM	\N	\N	\N
20313	SGD_TRANSCRIPT	\N	KNOWNXREF	0	SGD transcript name	PRIMARY_DB_SYNONYM	\N	\N	\N
20317	phyra_jgi_v1.1	1.1	KNOWNXREF	0	JGI ID (JGI 1.1)	PRIMARY_DB_SYNONYM	\N	\N	\N
20320	physo1_jgi_v1.1	1.1	KNOWNXREF	0	JGI ID (JGI 1.1)	PRIMARY_DB_SYNONYM	\N	\N	\N
20325	BROAD_P_infestans	1	KNOWNXREF	0	Broad Institute	MISC	\N	\N	\N
20329	triad_jgi_v1.0_gene	1	KNOWNXREF	0	JGI Gene ID (JGI Triad 1.0)	PRIMARY_DB_SYNONYM	\N	\N	\N
20330	triad_jgi_v1.0_transcript	1	KNOWNXREF	0	JGI Transcript ID (JGI Triad 1.0)	PRIMARY_DB_SYNONYM	\N	\N	\N
20331	triad_jgi_v1.0	1	KNOWNXREF	0	JGI ID (JGI Triad 1.0)	MISC	\N	\N	\N
20334	SCHISTODB	1	KNOWNXREF	0	SchistoDB	MISC	\N	\N	\N
20337	BROAD_F_oxysporum	1	KNOWNXREF	0	Broad Institute	MISC	\N	\N	\N
20338	BROAD_F_oxysporum_GENE	1	KNOWNXREF	0	Broad Institute	PRIMARY_DB_SYNONYM	\N	\N	\N
20339	BROAD_F_oxysporum_TRANSCRIPT	1	KNOWNXREF	0	Broad Institute	PRIMARY_DB_SYNONYM	\N	\N	\N
20340	BROAD_G_zeae	1	KNOWNXREF	0	Broad Institute	MISC	\N	\N	\N
20343	BROAD_G_moniliformis	1	KNOWNXREF	0	Broad Institute	MISC	\N	\N	\N
20344	BROAD_G_moniliformis_GENE	1	KNOWNXREF	0	Broad Institute	PRIMARY_DB_SYNONYM	\N	\N	\N
20345	BROAD_G_moniliformis_TRANSCRIPT	1	KNOWNXREF	0	Broad Institute	PRIMARY_DB_SYNONYM	\N	\N	\N
20348	PGD_GENE	1	KNOWNXREF	0	Pythium genome database	PRIMARY_DB_SYNONYM	\N	\N	\N
20350	RegulonDb_Operon	\N	KNOWNXREF	0	RegulonDb	PRIMARY_DB_SYNONYM	\N	\N	\N
20354	BROAD_U_maydis	1	KNOWNXREF	0	Broad Institute	MISC	\N	\N	\N
20355	BROAD_U_maydis_GENE	1	KNOWNXREF	0	Broad Institute	PRIMARY_DB_SYNONYM	\N	\N	\N
20356	BROAD_U_maydis_TRANSCRIPT	1	KNOWNXREF	0	Broad Institute	PRIMARY_DB_SYNONYM	\N	\N	\N
20357	BROAD_P_triticina	1	KNOWNXREF	0	Broad Institute	MISC	\N	\N	\N
20358	BROAD_P_triticina_GENE	1	KNOWNXREF	0	Broad Institute	PRIMARY_DB_SYNONYM	\N	\N	\N
20359	BROAD_P_triticina_TRANSCRIPT	1	KNOWNXREF	0	Broad Institute	PRIMARY_DB_SYNONYM	\N	\N	\N
20360	SpBase	1	KNOWNXREF	0	SpBase	MISC	\N	\N	\N
20362	necha_jgi_v2.0_gene	2	KNOWNXREF	0	Nectria JGI gene	PRIMARY_DB_SYNONYM	\N	\N	\N
20363	necha_jgi_v2.0_transcript	2	KNOWNXREF	0	Nectria JGI transcript	PRIMARY_DB_SYNONYM	\N	\N	\N
20364	necha_jgi_v2.0	2	KNOWNXREF	0	Nectria JGI	MISC	\N	\N	\N
20365	tuber_genoscope_gene	1	KNOWNXREF	0	Tuber Genome Browser	PRIMARY_DB_SYNONYM	\N	\N	\N
20368	Mycgr3_jgi_v2.0_gene	2	KNOWNXREF	0	Mycosphaerella JGI gene	PRIMARY_DB_SYNONYM	\N	\N	\N
20372	BROAD_P_NODORUM_GENE	1	KNOWNXREF	0	Broad Institute	PRIMARY_DB_SYNONYM	\N	\N	\N
20377	PomBase_TRANSCRIPT	\N	KNOWNXREF	0	PomBase	PRIMARY_DB_SYNONYM	\N	\N	\N
20378	PomBase_TRANSLATION	1	KNOWNXREF	0	PomBase (peptide)	PRIMARY_DB_SYNONYM	\N	\N	\N
20380	CBS	\N	KNOWNXREF	0	CBS Server	MISC	\N	\N	\N
20381	COG	\N	KNOWNXREF	0	Cluster of Orthologous Groups (NCBI)	MISC	\N	\N	\N
20382	CGD	\N	KNOWN	0	Candida Genome Database	MISC	\N	\N	\N
20383	ProSite	\N	XREF	0	ProSite ID	MISC	\N	\N	\N
20385	SMART	\N	XREF	0	SMART ID	MISC	\N	\N	\N
20386	SPD	\N	KNOWNXREF	0	SPD ID	MISC	\N	\N	\N
20388	PBO	\N	KNOWNXREF	0	PomBase Ontology ID	MISC	\N	\N	\N
20389	FYPO	\N	KNOWNXREF	0	Fission Yeast Phenotype Ontology	MISC	\N	\N	\N
20390	MOD	\N	KNOWNXREF	0	PSI-MOD, Post Translational Modification Ontology	MISC	\N	\N	\N
20391	AGD_GENE	1	KNOWNXREF	0	Ashbya Genome Database	PRIMARY_DB_SYNONYM	\N	\N	\N
20392	AGD_TRANSCRIPT	1	KNOWNXREF	0	Ashbya Genome Database	PRIMARY_DB_SYNONYM	\N	\N	\N
50000	BGI_EST_Cluster	\N	XREF	0	EST Cluster (BGI Indica)	MISC	\N	\N	\N
50005	EC_NUMBER	\N	XREF	0	Enzyme EC Number	MISC	\N	\N	\N
50010	FSTs	\N	XREF	0	Flanking Sequence Tag (FST)	MISC	\N	\N	\N
50035	Gramene_MarkersDB	\N	XREF	0	Gramene	MISC	\N	\N	\N
50040	Gramene_MarkersDB_mRNA	\N	XREF	0	GenBank mRNA (Gramene)	MISC	\N	\N	\N
50050	Gramene_MarkersDB_EST	\N	XREF	0	GenBank EST (Gramene)	MISC	\N	\N	\N
50090	NASC_GENE_ID	\N	XREF	1	NASC Gene ID	MISC	\N	\N	\N
50110	PlantGDB_PUT	\N	XREF	1	PlantGDB Transcript	MISC	\N	\N	\N
50120	RAP_Gene	\N	XREF	0	IRGSP/RAP Gene	MISC	\N	\N	\N
50140	TIGR_LOCUS	\N	XREF	1	MSU/TIGR Locus	MISC	\N	\N	\N
50160	TAIR_LOCUS	\N	XREF	8	TAIR	MISC	\N	\N	\N
50170	TAIR_LOCUS_MODEL	\N	XREF	8	TAIR Locus (Model)	MISC	\N	\N	\N
50180	TIGR_GeneIndex	\N	XREF	0	Gene Index	MISC	\N	\N	\N
50185	TO	\N	XREF	0	Plant Trait Ontology	MISC	\N	\N	\N
50190	PO	\N	XREF	0	Plant Structure Ontology	MISC	\N	\N	\N
50196	GO_to_gene	\N	XREF	0	Gene Ontology	MISC	\N	\N	\N
50200	GRO	\N	XREF	0	Plant Growth Stage	MISC	\N	\N	\N
50541	LRG	\N	KNOWN	10	Locus Reference Genomic	MISC	\N	\N	\N
50542	ENS_LRG_gene	\N	KNOWN	10	LRG display in Ensembl gene	MISC	\N	\N	\N
50543	ENS_LRG_transcript	\N	KNOWN	10	LRG display in Ensembl transcript	MISC	\N	\N	\N
50607	miRBase_trans_name	\N	KNOWNXREF	5	miRBase transcript name	MISC	\N	\N	transcript name from miRBase
50608	RFAM_trans_name	\N	KNOWNXREF	5	RFAM transcript name	MISC	\N	\N	transcript name from RFAM
50609	HGNC_trans_name	\N	KNOWNXREF	5	HGNC transcript name	MISC	\N	\N	transcript name from HGNC
50610	MGI_trans_name	\N	KNOWNXREF	5	MGI transcript name	MISC	\N	\N	transcript name from MGI
50611	ZFIN_ID_trans_name	\N	KNOWNXREF	5	ZFIN transcript name	MISC	\N	\N	transcript name from ZFIN
50620	Illumina_Bodymap_transcriptome	\N	XREF	0	Illumina Bodymap transcriptome	MISC	\N	\N	\N
50621	Uniprot_gn	\N	KNOWN	116	UniProtKB Gene Name	MISC	\N	\N	\N
50622	GGSC	\N	KNOWNXREF	0	Gibbon Genome Sequencing Consortium	MISC	\N	\N	Gibbon Genome Sequencing Consortium
50623	Broad Institute	\N	KNOWN	5	Broad Institute of MIT and Harvard	MISC	\N	\N	\N
50624	PFAM	\N	XREF	0	PFAM	MISC	\N	\N	Pfam from Vega
50625	SGSC	\N	KNOWN	5	Swine Genome Sequencing Consortium	MISC	\N	\N	\N
50626	RIKEN	\N	KNOWN	5	Riken Institute	MISC	\N	\N	\N
50627	SHSC	\N	KNOWNXREF	0	Tasmanian Devil Sequencing Consortium	MISC	\N	\N	Tasmanian Devil Genome Sequencing Consortium
50628	PFAM	22	XREF	0	PFAM	MISC	\N	\N	Pfam release 22, from Vega
50629	PFAM	23	XREF	0	PFAM	MISC	\N	\N	Pfam release 23, from Vega
50630	PFAM	24	XREF	0	PFAM	MISC	\N	\N	Pfam release 24, from Vega
50631	PFAM	25	XREF	0	PFAM	MISC	\N	\N	Pfam release 25, from Vega
50632	PFAM	26	XREF	0	PFAM	MISC	\N	\N	Pfam release 26, from Vega
50633	GRC_primary_assembly	\N	XREF	0	GRC primary assembly	MISC	\N	\N	Primary assembly of this species genome from the GRC
50634	Ens_Ga_gene	\N	XREF	5	Ensembl Stickleback Gene	MISC	\N	\N	\N
50635	Ens_Ga_transcript	\N	XREF	170	Ensembl Stickleback Transcript	MISC	\N	\N	\N
50637	CSAC	\N	KNOWN	5	Chimpanzee Sequencing and Analysis Consortium	MISC	\N	\N	\N
50640	PomBase_Interaction_GENETIC	1	KNOWNXREF	5	PomBase Interaction Genetic	MISC	\N	\N	\N
50641	PomBase_Interaction_PHYSICAL	1	KNOWNXREF	5	PomBase Interaction Physical	MISC	\N	\N	\N
50642	PomBase_Gene_Name	1	KNOWNXREF	5	PomBase Gene Name	MISC	\N	\N	\N
50643	PomBase_Systematic_ID	1	KNOWNXREF	5	PomBase Systematic ID	MISC	\N	\N	\N
50644	PomBase_Ortholog	1	KNOWNXREF	5	Orthologous Gene	MISC	\N	\N	\N
50645	Ens_Ss_translation	\N	XREF	5	Ensembl Pig Translation	MISC	\N	\N	\N
50646	Psinensis_sequencing_consortium	\N	KNOWN	5	Pelodiscus sinensis sequencing consortium	MISC	\N	\N	\N
50647	BROAD_Magnaporthe_DB	1	KNOWNXREF	0	Magnaporthe comparative DB	MISC	\N	\N	Broad Institute Magnaporthe comparative Database
50648	BROAD_Magnaporthe_DB_GENE	1	KNOWNXREF	0	Magnaporthe comparative DB	PRIMARY_DB_SYNONYM	\N	\N	Broad Institute Magnaporthe comparative Database
50649	BROAD_Magnaporthe_DB_TRANSCRIPT	1	KNOWNXREF	0	Magnaporthe comparative DB	PRIMARY_DB_SYNONYM	\N	\N	Broad Institute Magnaporthe comparative Database
50650	BGI Shenzhen	\N	KNOWN	5	Beijing Genomics Institute, Shenzhen	MISC	\N	\N	\N
50651	ICGSC	\N	KNOWN	5	International Cat Genome Sequencing Consortium	MISC	\N	\N	\N
50653	WashingtonUniversity	\N	KNOWN	5	The Genome Institute, Washington University School of Medicine	MISC	\N	\N	\N
50654	BDGP_cDNA	1	KNOWN	50	Fly cDNA	MISC	\N	\N	cDNA from the Berkeley Drosophila Genome Project
50655	BDGP_cDNA_Gold_Collection	1	KNOWN	50	Fly gold cDNA	MISC	\N	\N	Gold Collection cDNA from the Berkeley Drosophila Genome Project
50656	Ens_Tg_translation	\N	KNOWN	5	Ensembl Zebrafinch Translation	MISC	\N	\N	\N
50658	ToxoDB	1	KNOWNXREF	1	ToxoDB	PRIMARY_DB_SYNONYM	\N	\N	Toxoplasma Genomic Resource Database.
50660	SO	1	KNOWNXREF	0	Sequence Ontology	MISC	\N	\N	Sequence Ontology
50661	BRAD_GENE	1	XREF	5	BrassEnsembl	MISC	\N	\N	The Brassica Genome Database
50662	BRAD_TRANSCRIPT	1	XREF	5	BrassEnsembl	MISC	\N	\N	The Brassica Genome Database
50663	Quick_Go	\N	KNOWN	1	GOA	MISC	\N	\N	Resource to show GOA records for Uniprot Accessions
50664	Quick_Go_Evidence	\N	KNOWN	1	Quick Go	MISC	\N	\N	Resource to show GOA view of original annotation sources
50666	IGDBCAS-v1.4_GENE	1.4	KNOWN	1	IGDBCAS v1.4 Gene	MISC	\N	\N	\N
50667	IGDBCAS-v1.4_TRANSCRIPT	1.4	KNOWN	1	IGDBCAS v1.4 Transcript	MISC	\N	\N	\N
50668	JGI_GENE	1	XREF	1	JGI Gene	MISC	\N	\N	gene ID/NAME in the JGI gff3 file
50669	JGI_TRANSCRIPT	1	XREF	1	JGI Transcript	MISC	\N	\N	transcript/mRNA ID/NAME in the JGI gff3 file
50672	IRGSPv1_GENE	1	KNOWNXREF	1	IRGSP v1 Gene	MISC	\N	\N	\N
50673	IRGSPv1_TRANSCRIPT	1	KNOWNXREF	1	IRGSP v1 Transcript	MISC	\N	\N	\N
50674	Ens_Lc_gene	\N	XREF	5	Ensembl Coelacanth Gene	MISC	\N	\N	\N
50677	RGSC	\N	KNOWNXREF	0	Rat Genome Sequencing Consortium	MISC	\N	\N	Rat Genome Sequencing Consortium
50678	BROAD_coelacanth_transcriptome	\N	XREF	0	BROAD Institute coelacanth transcriptome	MISC	\N	\N	\N
50679	Ens_Ac_translation	\N	XREF	40	Ensembl Anole Lizard Translation	MISC	\N	\N	\N
50682	BGI_Gene	1	XREF	50	BGI Gene	MISC	\N	\N	BGI gene identifier
50683	GeneIndex	1	XREF	50	GeneIndex	MISC	\N	\N	\N
50684	EO	1	XREF	0	Environment Ontology	MISC	\N	\N	Plant environmental conditions ontology terms.
\
More information in there:
\
http://www.gramene.org/plant_ontology/ontology_browse.html#eo
50687	Uppsala University	\N	KNOWN	5	Uppsala University	MISC	\N	\N	\N
50688	GenBank	1	XREF	1	GenBank	MISC	\N	\N	GenBank identifier
50690	RefSeq_gene_name	\N	KNOWN	200	RefSeq gene name	MISC	\N	\N	This is read out of the *.gff files provided to us by the NCBI when we do a RefSeq import or a CCDS comparison. It has the key "gene_id" and is found at the start of the 9th field.
50691	SGN	1	KNOWNXREF	1	Sol Genomics Network	MISC	\N	\N	\N
50692	GRC_alignment_import	\N	XREF	0	GRC alignment import	MISC	\N	\N	Imported alignments from the Genome Reference Consortium.
50693	BROAD_monodelphis_transcriptome	\N	XREF	0	Broad Institute transcriptome data for monodelphis	MISC	\N	\N	\N
50694	SIB_mondelphis_transcriptome	\N	XREF	0	Swiss Institute of Bioinformatics transcriptome data for monodelphis	MISC	\N	\N	\N
50695	SIB_platypus_transcriptome	\N	XREF	0	Swiss Institute of Bioinformatics transcriptome data for platypus	MISC	\N	\N	\N
50696	SIB_orangutan_transcriptome	\N	XREF	0	Swiss Institute of Bioinformatics transcriptome data for orangutan	MISC	\N	\N	\N
50697	NCBI_TAXONOMY	1	KNOWNXREF	1	NCBI species	MISC	\N	\N	Organism listed in NCBI
50698	PHI	1	KNOWNXREF	1	PHI-base accession	MISC	\N	\N	Parasite-host interaction identifiers from PHI-base
50700	AnoXcel	2	KNOWN	50	AnoXcel	MISC	\N	\N	VectorBase xref.
50701	PGSC_GENE	1	XREF	1	PGSC	MISC	\N	\N	Potato Genome Sequencing Consortium database
50703	Uniprot_gn_trans_name	\N	KNOWNXREF	5	UniProt transcript name	MISC	\N	\N	transcript name projected from UniProt gene name
50708	GMGC_GENE	1	KNOWNXREF	1	GMGC	PRIMARY_DB_SYNONYM	\N	\N	Global Musa Genomics Consortium gene cross-references
50709	tamu_vibs	\N	KNOWN	0	TAMU VIBS	MISC	\N	\N	The Texas A&M College of Veterinary Medicine & Biomedical Sciences, Department of Veterinary Integrative Biosciences.
50710	INSDC	0	KNOWNXREF	5	International Nucleotide Sequence Database Collaboration	MISC	INSDC	\N	This external_db_id was initially made for use in the seq_region_synonym table. For species such as human, cow, dog we store chromosome names (1-22, X,Y) in the name column of the seq_region table. The INSDC accession is stored as a synonym.
50711	ISGC	\N	KNOWNXREF	0	International Sheep Genome Consortium	MISC	\N	\N	International Sheep Genome Consortium
50713	TAIR_SYMBOL	10	KNOWN	60	TAIR Gene Name	PRIMARY_DB_SYNONYM	\N	\N	TAIR gene names
50715	TIGR_ID	1	XREF	1	TIGR Internal ID	MISC	\N	\N	cross-references to TIGR internal identifiers, attached to genes.
50717	GOA	1	KNOWNXREF	1	UniProtKB-Gene Ontology Annotation	MISC	\N	\N	GOA xrefs (to UniProt identifiers)
50718	ENA_GENE	1	KNOWNXREF	1	European Nucleotide Archive	MISC	\N	\N	Cross-references to the source gene model when importing from ENA.
50719	ENA_TRANSCRIPT	1	KNOWNXREF	1	European Nucleotide Archive	MISC	\N	\N	Cross-references to the source transcript model when importing from ENA.
50720	LGBPratt_EST_Cluster	1	KNOWNXREF	1	LGBPratt_EST_Cluster	MISC	\N	\N	\N
50721	BaylorCollege	\N	KNOWN	5	Baylor College of Medicine, Texas Medical Center	MISC	\N	\N	\N
50722	Rhea	1	KNOWNXREF	1	Rhea	MISC	\N	\N	Cross-references to Rhea attached to translation objects
50723	Ens_Bt_translation	\N	XREF	5	Ensembl Cow Translation	MISC	\N	\N	\N
50726	ENA_FEATURE_GENE	1	KNOWNXREF	1	European Nucleotide Archive feature (gene source)	MISC	\N	\N	Cross-reference to the ENA object from which the gene has been inferred, when loading a genome from ENA records.
50727	ENA_FEATURE_TRANSCRIPT	1	KNOWNXREF	1	European Nucleotide Archive feature (transcript source)	MISC	\N	\N	Cross-reference to the ENA object from which the transcript has been inferred, when loading a genome from ENA records.
50728	ENA_FEATURE_PROTEIN	1	KNOWNXREF	1	European Nucleotide Archive feature (translation source)	MISC	\N	\N	Cross-reference to the ENA object from which the translation has been inferred, when loading a genome from ENA records.
50730	AGP	\N	KNOWN	5	Anolis Genome Project	MISC	\N	\N	\N
50731	Turkey Genome Consortium	\N	KNOWN	5	Turkey Genome Consortium	MISC	\N	\N	Turkey Genome Consortium
50732	Yutaka_Satou_Kyoto_University	\N	KNOWN	5	Yutaka Satou Kyoto University	MISC	\N	\N	Yutaka Satou Kyoto University
50733	Chicken_Genome_Consortium	\N	KNOWN	5	International Chicken Genome Consortium	MISC	\N	\N	\N
50734	TAIR_TRANSLATION	1	XREF	1	TAIR Translation identifier	MISC	\N	\N	TAIR identifier to link to Ensembl Translation entities.
\
The main requirement behind this entry, is to be able to link TAIR GO annotations to Ensembl Translation objects.
50735	AGI_GENE	1	XREF	1	AGI Gene	MISC	\N	\N	annotation provided by Arizona Genome Institute
50736	AGI_TRANSCRIPT	1	XREF	1	AGI Transcript	MISC	\N	\N	annotation provided by Arizona Genome Institute
50737	CGNC	\N	KNOWNXREF	100	CGNC Symbol	PRIMARY_DB_SYNONYM	\N	\N	\N
50738	MetaCyc	1	KNOWNXREF	1	MetaCyc	MISC	\N	\N	MetaCyc database of metabolic pathways
50739	PHIP	1	KNOWNXREF	1	PHI-base phenotype ontology	MISC	\N	\N	PHI-base phenotype ontology for genes proven to affect the outcome of pathogen-host interactions
50740	PHIE	1	KNOWNXREF	1	PHI-base condition ontology	MISC	\N	\N	PHI-base experimental evidence ontology for genes proven to affect the outcome of pathogen-host interactions
50741	dbSNP	\N	XREF	101	dbSNP	MISC	\N	\N	dbSNP variant corresponding to Vega 1kG LOF Variant.
50742	PubMedCentral	\N	KNOWN	5	PubMedCentral	LIT	\N	\N	PMC identifier for use with PubMedCentral (http://www.ncbi.nlm.nih.gov/pmc and http://europepmc.org/)
50743	PFAM	27	XREF	0	PFAM	MISC	\N	\N	Pfam release 27, from Vega
50744	EntrezGene_trans_name	\N	KNOWNXREF	250	EntrezGene transcript name	MISC	\N	\N	transcript name projected from EntrezGene gene name
50745	BROAD_M_violaceum	1	KNOWNXREF	0	Broad Institute	MISC	\N	\N	Broad Institute Microbotryum violaceum Database
50746	BROAD_M_violaceum_GENE	1	KNOWNXREF	0	Broad Institute	PRIMARY_DB_SYNONYM	\N	\N	Broad Institute Microbotryum violaceum Database
50747	BROAD_M_violaceum_TRANSCRIPT	1	KNOWNXREF	0	Broad Institute	PRIMARY_DB_SYNONYM	\N	\N	Broad Institute Microbotryum violaceum Database
50748	Ensembl_Plants	1	XREF	1	Ensembl Plants	ENSEMBL	\N	\N	Ensembl Plants identifiers serving GO projections from a reference species to other plants species.
50749	ChEMBL	\N	KNOWNXREF	5	ChEMBL	MISC	\N	\N	ChEMBL external references imported via Uniprot mappings
50750	IBSC	1	KNOWNXREF	50	IBSC Gene ID	MISC	\N	\N	International Barley Sequencing Consortium gene identifier
50752	PRIDE	\N	XREF	0	PRIDE	MISC	\N	\N	\N
50753	LegioList	\N	XREF	0	LegioList	MISC	\N	\N	Database dedicated to the analysis of the genomes of Legionella
50755	BindingDB	\N	XREF	0	BindingDB	MISC	\N	\N	BindingDB is a public, web-accessible database of measured binding affinities
50756	STRING	\N	XREF	0	STRING	MISC	\N	\N	STRING - Known and Predicted Protein-Protein Interactions
50757	UniPathway	\N	XREF	0	UniPathway	MISC	\N	\N	UniPathway is a manually curated resource of enzyme-catalyzed and spontaneous chemical reactions.
50759	SWISS_MODEL	\N	XREF	0	SWISS-MODEL	MISC	\N	\N	The SWISS-MODEL Repository is a database of annotated three-dimensional comparative protein structure models generated by the fully automated homology-modelling pipeline SWISS-MODEL.
50762	CYGD	\N	XREF	0	CYGD	MISC	\N	\N	The MIPS Comprehensive Yeast Genome Database (CYGD) aims to present information on the molecular structure and functional network of the entirely sequenced, well-studied model eukaryote, the budding yeast Saccharomyces cerevisiae.
50770	PseudoCAP	\N	XREF	0	Pseudomonas Genome Database	MISC	\N	\N	The Pseudomonas Genome database has been a resource for peer-reviewed, continually-updated annotations for the Pseudomonas aeruginosa PAO1 reference strain's genome and, more recently, comparative analyses of several related Pseudomonas species.
50771	MINT	\N	XREF	0	MINT	MISC	\N	\N	MINT, the Molecular INTeraction database, focuses on experimentally verified protein-protein interactions mined from the scientific literature by expert curators.
50772	Ant Genomes Portal	\N	KNOWNXREF	0	Ant Genomes Portal	MISC	\N	\N	\N
50775	Ens_Mg_translation	\N	XREF	40	Ensembl Turkey Translation	MISC	\N	\N	\N
50776	LNCC	\N	XREF	30	LNCC	MISC	\N	\N	The National Laboratory of Scientific Computation (Laboratorio Nacional de Computacao Cientifica: LNCC), Brazil
50777	RGD_trans_name	\N	KNOWNXREF	50	RGD transcript name	MISC	\N	\N	transcript name from RGD
50778	Xenbase_trans_name	\N	KNOWNXREF	1	Xenbase transcript name	MISC	\N	\N	transcript name from Xenbase
50779	NasoniaBase	\N	KNOWN	0	NasoniaBase	MISC	\N	\N	\N
50780	wormbase_gseqname	\N	KNOWN	6	WormBase Gene Sequence-name	MISC	\N	\N	\N
50782	Sanger	\N	KNOWN	5	Sanger Wellcome Trust Institute	MISC	\N	\N	\N
50783	ENSP_ident	\N	XREF	1	Ensembl translation having exact match with Havana	ALT_TRANS	\N	\N	\N
50784	Ensembl_Metazoa	1	XREF	1	Ensembl Metazoa	ENSEMBL	\N	\N	Ensembl Metazoa identifiers serving GO projections from a reference species to other metazoa species.
50785	Ens_Mmu_translation	\N	XREF	40	Ensembl Macaque Translation	MISC	\N	\N	\N
50786	PomBase_GO_AnnotationExtensions	\N	KNOWN	1	PomBase GO AnnotationExtensions	MISC	\N	\N	Specific accession used by PomBase for ontology annoation extensions
50788	SP_SL	\N	KNOWN	0	UniProtKB/SwissProt Subcellular Locatisation	MISC	\N	\N	UniProt Subcellular Location (http://www.uniprot.org/manual/subcellular_location)
50789	PR	\N	KNOWNXREF	0	Protein Ontology	MISC	\N	\N	Protein Ontology term (previously PR) - http://pir.georgetown.edu/pro/pro.shtml
50790	PUBMED_POMBASE	\N	KNOWN	1	PomBase PubMed ID	LIT	\N	\N	PomBase specific publications
50792	CL	\N	KNOWNXREF	0	Cell Type Ontology	MISC	\N	\N	Cell type ontology annotations (http://cellontology.org/)
50793	ChEBI	\N	KNOWNXREF	0	ChEBI Chemical Database	MISC	\N	\N	ChEBI chemical database
50794	FYPO_EXT	\N	KNOWNXREF	1	FYPO Extensions	MISC	\N	\N	Annotation extension terms for the Fission Yeast Phenotype Ontology (FYPO)
50795	EcoCyc	\N	KNOWNXREF	1	EcoCyc	MISC	\N	\N	Scientific database for E. coli and a division of MetaCyc (http://ecocyc.org/)
50796	PATO	\N	KNOWNXREF	1	Phenotypic Qualities Ontology	MISC	\N	\N	http://obofoundry.org/wiki/index.php/PATO:Main_Page
50797	UniProtKB-KW	\N	KNOWNXREF	0	UniProtKB Keywords	MISC	\N	\N	UniProtKB Keywords for describing UniProt annotations
50798	PBQ	\N	KNOWNXREF	0	PomBase Quiescence Ontology	MISC	\N	\N	Used in the annotation of quiescent cell phenotypes.
50799	University of Texas	\N	KNOWN	5	University of Texas	MISC	\N	\N	\N
50801	KEGG_Enzyme	\N	XREF	0	KEGG Pathway and Enzyme	MISC	\N	\N	KEGG pathway and enzyme
50802	gfbgp	\N	KNOWN	0	Glanville Fritillary Butterfly Genome Project	MISC	\N	\N	\N
50803	ensembl_internal_synonym	\N	KNOWNXREF	100	Ensembl internal synonym	MISC	\N	\N	\N
50808	DOI	\N	KNOWN	5	Digital Object Identifier	LIT	\N	\N	Digital Object Identifier used to uniquely identify an object such as an electronic document.
50809	zngp	\N	KNOWNXREF	0	Zootermopsis nevadensis Genome Project	MISC	\N	\N	\N
50814	FGDB	\N	KNOWNXREF	0	FGDB	ALT_GENE	\N	\N	MIPS Fusarium graminearum Genome Database
50815	Ensembl_Fungi	1	XREF	1	Ensembl Fungi	ENSEMBL	\N	\N	Ensembl Fungi identifiers serving GO projections from a reference species to other fungal species.
50817	RNAcentral	\N	KNOWNXREF	0	RNAcentral	PRIMARY_DB_SYNONYM	\N	\N	Sequence identity to RNAcentral ids
50818	Smar_Community_Annotation	\N	KNOWN	50	Strigamia maritima Community Annotation	MISC	\N	\N	\N
50819	RFAM_GENE	\N	KNOWN	0	Rfam Gene Name	MISC	\N	\N	Name for gene assigned from Rfam alignment
50820	PGSB_WHEAT_GENE	2.2	KNOWNXREF	1	Wheat survey sequence PGSB gene identifier	MISC	\N	\N	Bread wheat survey sequence gene models from PGSB Wheat Genome Database (formerly MIPS). Release 2.2
50821	GDEC_GENE	1.0	KNOWNXREF	1	GDEC 3B gene identifier	MISC	\N	\N	Bread wheat 3B pseudomolecule gene models from INRA GDEC group.\

50822	ARAPORT_GENE	1	KNOWNXREF	0	Araport	MISC	\N	\N	Gene identifiers from Araport, the Arabidopsis information portal (formerly TAIR).
50823	MTGD	4.0	KNOWNXREF	0	MTGD	PRIMARY_DB_SYNONYM	\N	\N	The Medicago truncatula Genome Database (MTGD), maintained by JCVI.
50824	Reactome_gene	\N	KNOWNXREF	0	Reactome gene	PRIMARY_DB_SYNONYM	\N	\N	Reactome entries linked to genes
50825	Reactome_transcript	\N	KNOWNXREF	0	Reactome transcript	PRIMARY_DB_SYNONYM	\N	\N	Reactome entries linked to transcripts
50826	PB_REF	\N	KNOWNXREF	1	PomBase Reference	MISC	\N	\N	Specific accession used by PomBase for source reference
50827	GEO	\N	XREF	0	Gene Expression Omnibus	MISC	\N	\N	\N
50828	GigaDB_A_tauschii	1	KNOWNXREF	1	Aegilops tauschii GigaDB identifier	MISC	\N	\N	Aegilops tauschii GigaDB gene identifier
50831	EFO	\N	KNOWNXREF	0	Experimental Factor Ontology	MISC	\N	\N	The Experimental Factor Ontology provides a systematic description of many experimental variables available in EBI databases, and for external projects such as the NHGRI GWAS catalog. It combines parts of several biological ontologies, such as UBERON anatomy, ChEBI chemical compounds, and Cell Ontology.
50832	EpiRR	\N	KNOWN	0	EpiRR	MISC	\N	\N	EpiRR is a registry of reference epigenomes.
50833	VGNC	\N	KNOWNXREF	100	VGNC Symbol	PRIMARY_DB_SYNONYM	\N	\N	\N
50834	VGNC_trans_name	\N	KNOWNXREF	5	VGNC transcript name	MISC	\N	\N	transcript name from VGNC
50835	VectorBase_Proteome	\N	KNOWN	50	VectorBase Proteome	MISC	\N	\N	\N
50836	Ensembl_Protists	1	XREF	1	Ensembl Protists	ENSEMBL	\N	\N	Ensembl Protists identifiers serving GO projections from a reference species to other protist species.
50837	MGP	\N	KNOWNXREF	0	Mouse Genomes Project	MISC	\N	\N	Mouse Genomes Project
50838	NHPRTR	\N	KNOWN	5	Nonhuman Primate Reference Transcriptome Resource	MISC	\N	\N	\N
50839	GeneID	\N	KNOWNXREF	0	Database of genes from NCBI RefSeq genomes	MISC	\N	\N	Entrez Gene (www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene) is NCBI's database for gene-specific information. It does not include all known or predicted genes; instead Entrez Gene focuses on the genomes that have been completely sequenced, that have an active research community to contribute gene-specific information, or that are scheduled for intense sequence analysis. The content of Entrez Gene represents the result of curation and automated integration of data from NCBI's Reference Sequence project (RefSeq), from collaborating model organism databases, and from many other databases available from NCBI. Records are assigned unique, stable and tracked integers as identifiers. The content (nomenclature, map location, gene products and their attributes, markers, phenotypes, and links to citations, sequences, variation details, maps, expression, homologs, protein domains and external databases) is updated as new information becomes available. Entrez Gene is a step forward from NCBI's LocusLink, with both a major increase in taxonomic scope and improved access through the many tools associated with NCBI Entrez.
50840	RefSeq	\N	KNOWNXREF	0	NCBI Reference Sequences	MISC	\N	\N	NCBI's reference sequence (RefSeq) database (http://www.ncbi.nlm.nih.gov/RefSeq/) is a curated non-redundant collection of sequences representing genomes, transcripts and proteins. The database includes 3774 organisms spanning prokaryotes, eukaryotes and viruses, and has records for 2,879,860 proteins (RefSeq release 19). RefSeq records integrate information from multiple sources, when additional data are available from those sources and therefore represent a current description of the sequence and its features. Annotations include coding regions, conserved domains, tRNAs, sequence tagged sites (STS), variation, references, gene and protein product names, and database cross-references. Sequence is reviewed and features are added using a combined approach of collaboration and other input from the scientific community, prediction, propagation from GenBank and curation by NCBI staff. The format of all RefSeq records is validated, and an increasing number of tests are being applied to evaluate the quality of sequence and annotation, especially in the context of complete genomic sequence.
50841	Archive_Plants	1	XREF	0	Ensembl Plants Archive	MISC	\N	\N	Historical gene identifier linking to the Ensembl Plants Archive site.
50842	Ensembl_Plants	\N	XREF	0	Ensembl Plants	MISC	\N	\N	Maping from translation to XREF
50843	MaizeGDB	\N	XREF	0	MaizeGDB	MISC	\N	\N	MaizeGDB is a community-oriented, long-term, federally funded informatics service to researchers focused on the crop plant and model organism Zea mays.
50845	Botrytis_community_symbol	\N	KNOWN	50	Botrytis community symbol	MISC	\N	\N	\N
50846	BARLEX	\N	KNOWN	1	BARLEX: The Barley Genome Explorer 	MISC	\N	\N	The <A HREF="http://barlex.barleysequence.org/">barley genome explorer</A> allows a visual inspection of BAC overlaps. In addition to a graph view the user can access dotplots and fingerprints to compare two individual BACs with each other. Information to genes and markers is available as well. 
50847	Ngyuen_et_al_2012	\N	PRED	0	PMID 23153364	MISC	\N	\N	The complete swine olfactory subgenome: expansion of the olfactory gene repertoire in the pig genome. BMC Genomics201213:584 PMID: 23153364
50848	Plant_Reactome_Reaction	\N	KNOWNXREF	0	Plant Reactome Reaction ID	MISC	\N	\N	Plant Reactome is a database of plant metabolic and regulatory pathways maintained by Gramene. This ID links to a Reaction in Plant Reactome.
50849	Plant_Reactome_Pathway	\N	KNOWNXREF	0	Plant Reactome Pathway ID	MISC	\N	\N	Plant Reactome is a database of plant metabolic and regulatory pathways maintained by Gramene. This ID links to a Pathway in Plant Reactome.
50850	CGSNL	\N	KNOWNXREF	0	Committee on Gene Symbolization, Nomenclature and Linkage of the Rice Genetics Cooperative	MISC	\N	\N	The Committee on Gene Symbolization, Nomenclature and Linkage (CGSNL) of the Rice Genetics Cooperative has revised the gene nomenclature system for rice (Oryza) to take advantage of the completion of the rice genome sequence and the emergence of new methods for detecting, characterizing, and describing genes in the biological community (<A HREF="https://doi.org/10.1007/s12284-008-9004-9">McCouch 2008</A>).
50851	Oryzabase	\N	KNOWNXREF	0	Integrated Rice Science Database	MISC	\N	\N	The aim of Oryzabase is to create a comprehensive view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information (<a href="https://doi.org/10.1104/pp.105.063008">Yamazaki 2006</a>).
50852	RAP-DB	\N	KNOWNXREF	0	Rice Annotation Project Database	MISC	\N	\N	The Rice Annotation Project Database (RAP-DB) provides a comprehensive set of gene annotations for the genome sequence of rice, Oryza sativa (japonica group) cv. Nipponbare (<A HREF="https://dx.doi.org/10.1093%2Fpcp%2Fpcs183">Itoh 2013</A>).
50853	Gasser_lab	\N	KNOWNXREF	5	Gene names assigned by Gasser Lab	MISC	\N	\N	\N
50854	Schisto_previous_id	\N	KNOWNXREF	5	Related identifier from previous versions of S. mansoni annotation	MISC	\N	\N	\N
50855	wormbase_cds	\N	KNOWNXREF	5	WormBase CDS	MISC	\N	\N	\N
50856	BGD	\N	KNOWNXREF	0	BGD	ALT_GENE	\N	\N	http://bovinegenome.org
50857	ENCODE	\N	KNOWN	0	ENCODE	MISC	\N	\N	\N
