Welcome to EUKulele’s documentation!

Contents

• Installation and Invocation
  • Installing with Pip
  • Installing with conda
  • Cloning the Development Code from GitHub
  • Invoking EUKulele
• Installing Databases and Creating Configuration Files
  • Default Databases
  • Using Other Databases
  • Customizing the Taxonomic Identification Cutoffs
• Expected Output of EUKulele
  • Taxonomy Estimation Folders
  • Taxonomy Counts Folders
  • Taxonomy Visualization Folders
• Tutorial
• Community Guidelines
  • How to contribute to EUKulele
  • Submitting an issue
  • Asking for help

Documentation

• API
• Parameters
• Auxiliary Scripts

Source Code

You can find the source for EUKulele on GitHub.

Badging

Indices and tables

• Index

• Module Index

• Search Page