Metadata-Version: 2.1
Name: element-animal
Version: 0.1.2
Summary: DataJoint Element for Animal Management
Home-page: https://github.com/datajoint/element-animal
Author: DataJoint
Author-email: info@datajoint.com
License: MIT
Description: # DataJoint Element - Animal
        
        + `element-animal` features a DataJoint pipeline design for subject and genotyping management. 
        
        + `element-animal` is not a complete workflow by itself, but rather a modular design of tables and dependencies. 
        
        + `element-animal` can be flexibly attached to any DataJoint workflow.
        
        + See the [Element Animal documentation](https://elements.datajoint.org/description/animal/) for the background information and development timeline.
        
        + For more information on the DataJoint Elements project, please visit https://elements.datajoint.org.  This work is supported by the National Institutes of Health.
        
        ## Element architecture
        
        There are two modules in `element-animal`:
        + subject: contains the basic information of subject, including Strain, Line, Subject, Zygosity, and SubjectDeath information
        + genotyping: this module is designed for labs that keep track of colony management and genotyping results, containing information of breeding, weaning, housing, and genotyping.
        
        ### Subject Diagram
        ![subject diagram](images/subject_diagram.svg)
        
        ### Genotyping Diagram
        ![genotyping diagram](images/genotyping_diagram.svg)
        
        ## Installation
        ```
        pip install element-animal
        ```
        
        If you already have an older version of ***element-animal*** installed using `pip`, upgrade with
        ```
        pip install --upgrade element-animal
        ```
        
        ## Element usage
        
        + `element-animal` is not a complete workflow by itself, but rather a modular design of tables and dependencies that can be flexibly attached to any DataJoint workflow.
        
        + See the [workflow-session](https://github.com/datajoint/workflow-session) repository for example usage of `element-animal`.
        
        + Also refer to the [workflow-calcium-imaging](https://github.com/datajoint/workflow-calcium-imaging) and [workflow-array-ephys](https://github.com/datajoint/workflow-array-ephys) repositories for example usages of `element-animal` when combining with other elements.
        
        ## Citation
        
        + If your work uses DataJoint and DataJoint Elements, please cite the respective Research Resource Identifiers (RRIDs) and manuscripts.
        
        + DataJoint for Python or MATLAB
            + Yatsenko D, Reimer J, Ecker AS, Walker EY, Sinz F, Berens P, Hoenselaar A, Cotton RJ, Siapas AS, Tolias AS. DataJoint: managing big scientific data using MATLAB or Python. bioRxiv. 2015 Jan 1:031658. doi: https://doi.org/10.1101/031658
        
            + DataJoint ([RRID:SCR_014543](https://scicrunch.org/resolver/SCR_014543)) - DataJoint for `<Select Python or MATLAB>` (version `<Enter version number>`)
        
        + DataJoint Elements
            + Yatsenko D, Nguyen T, Shen S, Gunalan K, Turner CA, Guzman R, Sasaki M, Sitonic D, Reimer J, Walker EY, Tolias AS. DataJoint Elements: Data Workflows for Neurophysiology. bioRxiv. 2021 Jan 1. doi: https://doi.org/10.1101/2021.03.30.437358
        
            + DataJoint Elements ([RRID:SCR_021894](https://scicrunch.org/resolver/SCR_021894)) - Element Animal (version `<Enter version number>`)
Keywords: neuroscience animal-management datajoint
Platform: UNKNOWN
Description-Content-Type: text/markdown
