LICENSE
README.md
setup.py
bakta/__init__.py
bakta/config.py
bakta/constants.py
bakta/db.py
bakta/ips.py
bakta/main.py
bakta/psc.py
bakta/pscc.py
bakta/so.py
bakta/ups.py
bakta/utils.py
bakta.egg-info/PKG-INFO
bakta.egg-info/SOURCES.txt
bakta.egg-info/dependency_links.txt
bakta.egg-info/entry_points.txt
bakta.egg-info/not-zip-safe
bakta.egg-info/requires.txt
bakta.egg-info/top_level.txt
bakta/expert/__init__.py
bakta/expert/amrfinder.py
bakta/expert/protein_sequences.py
bakta/features/__init__.py
bakta/features/annotation.py
bakta/features/cds.py
bakta/features/crispr.py
bakta/features/gaps.py
bakta/features/nc_rna.py
bakta/features/nc_rna_region.py
bakta/features/orf.py
bakta/features/ori.py
bakta/features/r_rna.py
bakta/features/s_orf.py
bakta/features/signal_peptides.py
bakta/features/t_rna.py
bakta/features/tm_rna.py
bakta/io/__init__.py
bakta/io/fasta.py
bakta/io/gff.py
bakta/io/insdc.py
bakta/io/json.py
bakta/io/tsv.py
test/test_args.py
test/test_bakta.py
test/test_dependencies.py
test/test_edge_features.py
test/test_nt_sequences.py
test/test_sORF.py
test/test_sig_peps.py
test/test_user_proteins.py