CHANGELOG.txt
LICENSE.txt
MANIFEST.in
README.md
requirements.txt
setup.py
docs/build/_sources/documentation.rst.txt
docs/build/_sources/index.rst.txt
docs/build/_sources/install.rst.txt
docs/build/_sources/introduction.rst.txt
docs/build/_sources/license.rst.txt
docs/build/_sources/to_do_list.rst.txt
docs/build/_sources/tutorial.rst.txt
docs/source/conf.py
docs/source/_build/html/_sources/documentation.rst.txt
docs/source/_build/html/_sources/index.rst.txt
docs/source/_build/html/_sources/install.rst.txt
docs/source/_build/html/_sources/introduction.rst.txt
docs/source/_build/html/_sources/license.rst.txt
docs/source/_build/html/_sources/to_do_list.rst.txt
docs/source/_build/html/_sources/tutorial.rst.txt
protein_inference/__init__.py
protein_inference/main.py
protein_inference/network_grapher.py
protein_inference/problem_network.py
protein_inference/protein_inference_runner.py
protein_inference/table_maker.py
protein_inference.egg-info/PKG-INFO
protein_inference.egg-info/SOURCES.txt
protein_inference.egg-info/dependency_links.txt
protein_inference.egg-info/requires.txt
protein_inference.egg-info/top_level.txt
protein_inference/benchmarking/__init__.py
protein_inference/benchmarking/benchmark_percolator_inference.py
protein_inference/benchmarking/benchmarking.py
protein_inference/benchmarking/entrapment_benchmark.py
protein_inference/benchmarking/legacy/compare_maxquant_output.py
protein_inference/benchmarking/legacy/evaluate_protein_inference.py
protein_inference/benchmarking/legacy/mq_input_reprisal_runner.py
protein_inference/benchmarking/legacy/process_maxquant_output.py
protein_inference/benchmarking/legacy/process_maxquant_output_legacy.py
protein_inference/benchmarking/legacy/process_protein_inference_output.py
protein_inference/inference/__init__.py
protein_inference/inference/false_discovery_rate_calculator.py
protein_inference/inference/protein_merger.py
protein_inference/inference/scorers.py
protein_inference/inference/uniqueness_tagger.py
protein_inference/processing/__init__.py
protein_inference/processing/processed_psms.py
protein_inference/processing/psms_network_generator.py
protein_inference/processing/psms_network_splitter.py
protein_inference/processing/psms_preprocessor.py
protein_inference/reprisal/__init__.py
protein_inference/reprisal/greedy_algorithm.py
streamlit/pi_playground.py
streamlit/pi_playground_legacy.py
test_data/downloads/percolator.decoy.psms.txt
test_data/downloads/percolator.target.psms.txt
tests/__init__.py
tests/test_data/test_psm.txt
tests/unit/greedy_algorithm_test.py
tests/unit/problem_network_tagger_test.py
tests/unit/problem_network_test.py
tests/unit/processed_psms_test.py
tests/unit/protein_merger_test.py
tests/unit/psms_network_generator_test.py
tests/unit/psms_network_splitter_test.py
tests/unit/table_writer_test.py