CMakeLists.txt
MANIFEST.in
README.md
setup.py
pp_sketch/__init__.py
pp_sketch/__main__.py
pp_sketch/matrix.py
pp_sketchlib.egg-info/PKG-INFO
pp_sketchlib.egg-info/SOURCES.txt
pp_sketchlib.egg-info/dependency_links.txt
pp_sketchlib.egg-info/entry_points.txt
pp_sketchlib.egg-info/not-zip-safe
pp_sketchlib.egg-info/requires.txt
pp_sketchlib.egg-info/top_level.txt
src/Makefile
src/api.cpp
src/api.hpp
src/json.hpp
src/reference.cpp
src/reference.hpp
src/robin_hood.h
src/sketchlib_bindings.cpp
src/database/database.cpp
src/database/database.hpp
src/database/hdf5_funcs.hpp
src/dist/dist.cpp
src/dist/dist.hpp
src/dist/linear_regression.cpp
src/dist/matrix.hpp
src/dist/matrix_idx.hpp
src/dist/matrix_ops.cpp
src/gpu/cuda.cuh
src/gpu/device_memory.cu
src/gpu/device_memory.cuh
src/gpu/device_reads.cu
src/gpu/device_reads.cuh
src/gpu/dist.cu
src/gpu/gpu.hpp
src/gpu/gpu_api.cpp
src/gpu/gpu_countmin.cu
src/gpu/gpu_countmin.cuh
src/gpu/sketch.cu
src/random/random_match.cpp
src/random/random_match.hpp
src/random/rng.cpp
src/random/rng.hpp
src/sketch/bitfuncs.hpp
src/sketch/countmin.cpp
src/sketch/countmin.hpp
src/sketch/kseq.h
src/sketch/ntHashIterator.hpp
src/sketch/nthash.hpp
src/sketch/nthash_tables.hpp
src/sketch/progress.hpp
src/sketch/seqio.cpp
src/sketch/seqio.hpp
src/sketch/sketch.cpp
src/sketch/sketch.hpp
src/sketch/stHashIterator.hpp
src/test/gpu_dist_test.cpp
src/test/main.cpp
src/test/matrix_test.cpp
src/test/read_test.cpp
src/web/.gitignore
src/web/web_sketch.cpp
test/test-dists.py
test/test-matrix.py
vendor/highfive/.clang-format
vendor/highfive/.gitignore
vendor/highfive/.gitmodules
vendor/highfive/.travis.yml
vendor/highfive/CHANGELOG.md
vendor/highfive/CMakeLists.txt
vendor/highfive/LICENSE
vendor/highfive/README.md
vendor/highfive/VERSION
vendor/highfive/default.nix
vendor/highfive/.github/build.sh
vendor/highfive/.github/pull_request_template.md
vendor/highfive/.github/ISSUE_TEMPLATE/bug_report.md
vendor/highfive/.github/ISSUE_TEMPLATE/feature_request.md
vendor/highfive/.github/workflows/ci.yml
vendor/highfive/.github/workflows/gh-pages.yml
vendor/highfive/.github/workflows/integration_trigger.yml
vendor/highfive/CMake/HighFiveConfig.cmake.in
vendor/highfive/CMake/HighFiveTargetDeps.cmake
vendor/highfive/CMake/HighFiveTargetExport.cmake
vendor/highfive/CMake/config/CompilerFlagsHelpers.cmake
vendor/highfive/CMake/config/ReleaseDebugAutoFlags.cmake
vendor/highfive/CMake/config/TestHelpers.cmake
vendor/highfive/doc/CMakeLists.txt
vendor/highfive/doc/Doxyfile
vendor/highfive/doc/environment.yaml
vendor/highfive/doc/mainpage.md
vendor/highfive/include/highfive/H5Attribute.hpp
vendor/highfive/include/highfive/H5DataSet.hpp
vendor/highfive/include/highfive/H5DataSpace.hpp
vendor/highfive/include/highfive/H5DataType.hpp
vendor/highfive/include/highfive/H5Easy.hpp
vendor/highfive/include/highfive/H5Exception.hpp
vendor/highfive/include/highfive/H5File.hpp
vendor/highfive/include/highfive/H5FileDriver.hpp
vendor/highfive/include/highfive/H5Group.hpp
vendor/highfive/include/highfive/H5Object.hpp
vendor/highfive/include/highfive/H5PropertyList.hpp
vendor/highfive/include/highfive/H5Reference.hpp
vendor/highfive/include/highfive/H5Selection.hpp
vendor/highfive/include/highfive/H5Utility.hpp
vendor/highfive/include/highfive/H5Version.hpp.in
vendor/highfive/include/highfive/bits/H5Annotate_traits.hpp
vendor/highfive/include/highfive/bits/H5Annotate_traits_misc.hpp
vendor/highfive/include/highfive/bits/H5Attribute_misc.hpp
vendor/highfive/include/highfive/bits/H5ConverterEigen_misc.hpp
vendor/highfive/include/highfive/bits/H5Converter_misc.hpp
vendor/highfive/include/highfive/bits/H5DataSet_misc.hpp
vendor/highfive/include/highfive/bits/H5DataType_misc.hpp
vendor/highfive/include/highfive/bits/H5Dataspace_misc.hpp
vendor/highfive/include/highfive/bits/H5Exception_misc.hpp
vendor/highfive/include/highfive/bits/H5FileDriver_misc.hpp
vendor/highfive/include/highfive/bits/H5File_misc.hpp
vendor/highfive/include/highfive/bits/H5Iterables_misc.hpp
vendor/highfive/include/highfive/bits/H5Node_traits.hpp
vendor/highfive/include/highfive/bits/H5Node_traits_misc.hpp
vendor/highfive/include/highfive/bits/H5Object_misc.hpp
vendor/highfive/include/highfive/bits/H5Path_traits.hpp
vendor/highfive/include/highfive/bits/H5Path_traits_misc.hpp
vendor/highfive/include/highfive/bits/H5PropertyList_misc.hpp
vendor/highfive/include/highfive/bits/H5ReadWrite_misc.hpp
vendor/highfive/include/highfive/bits/H5Reference_misc.hpp
vendor/highfive/include/highfive/bits/H5Selection_misc.hpp
vendor/highfive/include/highfive/bits/H5Slice_traits.hpp
vendor/highfive/include/highfive/bits/H5Slice_traits_misc.hpp
vendor/highfive/include/highfive/bits/H5Utils.hpp
vendor/highfive/include/highfive/bits/H5_definitions.hpp
vendor/highfive/include/highfive/h5easy_bits/H5Easy_Eigen.hpp
vendor/highfive/include/highfive/h5easy_bits/H5Easy_misc.hpp
vendor/highfive/include/highfive/h5easy_bits/H5Easy_opencv.hpp
vendor/highfive/include/highfive/h5easy_bits/H5Easy_public.hpp
vendor/highfive/include/highfive/h5easy_bits/H5Easy_scalar.hpp
vendor/highfive/include/highfive/h5easy_bits/H5Easy_vector.hpp
vendor/highfive/include/highfive/h5easy_bits/H5Easy_xtensor.hpp
vendor/highfive/src/examples/CMakeLists.txt
vendor/highfive/src/examples/boost_multi_array_2D.cpp
vendor/highfive/src/examples/boost_multiarray_complex.cpp
vendor/highfive/src/examples/boost_ublas_double.cpp
vendor/highfive/src/examples/compound_types.cpp
vendor/highfive/src/examples/create_attribute_string_integer.cpp
vendor/highfive/src/examples/create_dataset_double.cpp
vendor/highfive/src/examples/create_datatype.cpp
vendor/highfive/src/examples/create_extensible_dataset.cpp
vendor/highfive/src/examples/easy_attribute.cpp
vendor/highfive/src/examples/easy_dumpoptions.cpp
vendor/highfive/src/examples/easy_load_dump.cpp
vendor/highfive/src/examples/parallel_hdf5_write_dataset.cpp
vendor/highfive/src/examples/read_write_dataset_string.cpp
vendor/highfive/src/examples/read_write_fixedlen_string.cpp
vendor/highfive/src/examples/read_write_single_scalar.cpp
vendor/highfive/src/examples/read_write_vector_dataset.cpp
vendor/highfive/src/examples/read_write_vector_dataset_references.cpp
vendor/highfive/src/examples/renaming_objects.cpp
vendor/highfive/src/examples/select_by_id_dataset_cpp11.cpp
vendor/highfive/src/examples/select_partial_dataset_cpp11.cpp
vendor/highfive/tests/test_project_integration.sh
vendor/highfive/tests/test_dependent_library/CMakeLists.txt
vendor/highfive/tests/test_dependent_library/deps/.gitignore
vendor/highfive/tests/test_dependent_library/include/simpleton.hpp
vendor/highfive/tests/test_dependent_library/src/otherton.cpp
vendor/highfive/tests/test_dependent_library/src/simpleton.cpp
vendor/highfive/tests/unit/CMakeLists.txt
vendor/highfive/tests/unit/tests_high_five.hpp
vendor/highfive/tests/unit/tests_high_five_base.cpp
vendor/highfive/tests/unit/tests_high_five_easy.cpp
vendor/highfive/tests/unit/tests_high_five_multi_dims.cpp
vendor/highfive/tests/unit/tests_high_five_parallel.cpp
vendor/highfive/tests/unit/tests_import_public_headers.cpp