anndata==0.7.4
beautifulsoup4==4.9.1
certifi==2020.6.20
cycler==0.10.0
decorator==4.4.2
get-version==2.1
h5py==2.10.0
importlib-metadata==1.7.0
kiwisolver==1.2.0
legacy-api-wrap==1.2
llvmlite==0.33.0+1.g022ab0f
mkl-fft==1.1.0
mkl-random==1.1.0
mkl-service==2.3.0
mock==4.0.2
natsort==7.0.1
networkx==2.5
numexpr==2.7.1
olefile==0.46
packaging==20.4
patsy==0.5.1
pycairo==1.19.1
pyparsing==2.4.7
python-dateutil==2.8.1
pytz==2020.1
scikit-learn==0.21.3
seaborn==0.10.1
setuptools-scm==4.1.2
sinfo==0.3.1
six==1.15.0
soupsieve==2.0.1
statsmodels==0.11.1
stdlib-list==0.7.0
tables==3.6.1
texttable==1.6.2
tornado==6.0.4
tqdm==4.48.2
umap-learn==0.4.6
zipp==3.1.0

[bbknn]
bbknn

[doc]
sphinx
sphinx_rtd_theme
sphinx_autodoc_typehints
scanpydoc>=0.5

[doc:python_version < "3.7"]
typing_extensions

[harmony]
harmonypy

[leiden]
python-igraph
leidenalg

[louvain]
python-igraph
louvain!=0.6.2,>=0.6

[magic]
magic-impute>=2.0

[rapids]
cudf>=0.9
cuml>=0.9
cugraph>=0.9

[scvi]
scvi>=0.6.5

[skmisc]
scikit-misc>=0.1.3

[test]
pytest>=4.4
dask[array]!=2.17.0
fsspec
zappy
zarr
black
profimp
