# STOCKHOLM 1.0

#=GS   GCA_000001735.2_TAIR10.1_rm.out4 DE    SINE
#=GS  GCA_000001735.2_TAIR10.1_rm.out10 DE    SINE
#=GS  GCA_000001735.2_TAIR10.1_rm.out24 DE    SINE
#=GS  GCA_000001735.2_TAIR10.1_rm.out26 DE    SINE
#=GS  GCA_000001735.2_TAIR10.1_rm.out28 DE    SINE
#=GS  GCA_000001735.2_TAIR10.1_rm.out38 DE    SINE
#=GS  GCA_000001735.2_TAIR10.1_rm.out47 DE    SINE
#=GS  GCA_000001735.2_TAIR10.1_rm.out54 DE    SINE
#=GS  GCA_000001735.2_TAIR10.1_rm.out66 DE    SINE
#=GS  GCA_000001735.2_TAIR10.1_rm.out69 DE    SINE
#=GS  GCA_000001735.2_TAIR10.1_rm.out79 DE    SINE
#=GS  GCA_000001735.2_TAIR10.1_rm.out90 DE    SINE
#=GS  GCA_000001735.2_TAIR10.1_rm.out93 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out100 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out102 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out106 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out107 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out112 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out121 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out125 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out132 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out133 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out138 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out141 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out145 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out146 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out160 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out163 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out178 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out185 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out194 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out197 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out211 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out212 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out219 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out230 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out233 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out235 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out236 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out242 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out243 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out248 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out249 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out254 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out258 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out262 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out268 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out269 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out270 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out272 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out275 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out277 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out280 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out284 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out285 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out287 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out291 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out293 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out295 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out317 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out326 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out340 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out342 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out353 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out354 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out355 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out358 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out367 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out369 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out381 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out390 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out394 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out395 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out400 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out403 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out405 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out408 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out410 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out413 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out417 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out422 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out424 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out437 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out446 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out448 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out452 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out463 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out464 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out466 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out475 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out476 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out480 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out483 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out488 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out502 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out505 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out518 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out521 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out524 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out525 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out527 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out530 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out531 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out534 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out537 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out540 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out541 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out543 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out545 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out547 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out551 DE    SINE
#=GS GCA_000001735.2_TAIR10.1_rm.out552 DE    SINE

GCA_000001735.2_TAIR10.1_rm.out4    --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out10   --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out24   GTCCACACAGTTGTGGACTAGTGATAAG-GAAGAATTA--GGGAAAGGTT
GCA_000001735.2_TAIR10.1_rm.out26   ----------------------------------ATTT--GGTGAAAGGT
GCA_000001735.2_TAIR10.1_rm.out28   --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out38   ----------------------------------------GGTGAAGGGT
GCA_000001735.2_TAIR10.1_rm.out47   --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out54   GCCGAAGTATTTGTGGTCTAGTAGTAGG-GGAAGCTTT--AGTGAGGGAT
GCA_000001735.2_TAIR10.1_rm.out66   GCCCACACAACTGTGGTCTAGTGTTAAA-GGAGAATTG--GGAAAATGTT
GCA_000001735.2_TAIR10.1_rm.out69   --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out79   GCCCAACCATACAT--GGTCGGTAGAGA-AGGTTTGGT--ACTGAAGGGT
GCA_000001735.2_TAIR10.1_rm.out90   --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out93   --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out100  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out102  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out106  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out107  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out112  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out121  GTCCAAACCTCTTTGGTGTAGTGGCACAAG--------------GAAACT
GCA_000001735.2_TAIR10.1_rm.out125  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out132  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out133  --CCAAGTATATGTGGTTTAGTGGTAGGGGAAGCTTTG--GGAAG-----
GCA_000001735.2_TAIR10.1_rm.out138  ----AAACAGTTGTGGGCTAGTGGTAAG-GAAAAATTG--GGGAAAGCTT
GCA_000001735.2_TAIR10.1_rm.out141  GCCCAATCATTTGTGGTCTAGTGGTAAG-GGAAGCTTT--AGTGAAGTGT
GCA_000001735.2_TAIR10.1_rm.out145  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out146  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out160  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out163  -----------------------------------TT---AGAAAAGGGT
GCA_000001735.2_TAIR10.1_rm.out178  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out185  GCCCAAACATCTATGGTCTAGTGGTAGGAGAAGATTT---AGGGAATAGT
GCA_000001735.2_TAIR10.1_rm.out194  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out197  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out211  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out212  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out219  GCCCAATTATCTGTGGTTTAGTGGTAAGGGAAGTTTT---GGGGAAGGGT
GCA_000001735.2_TAIR10.1_rm.out230  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out233  GCCCAAGCATCTGTGATCCAGTGGTGGGAGAAGATTT---GGGGAAGGGT
GCA_000001735.2_TAIR10.1_rm.out235  --------------------------------AGATTT--GGGAT--GTG
GCA_000001735.2_TAIR10.1_rm.out236  --------------------------------AGATTT--GGGAT--GTG
GCA_000001735.2_TAIR10.1_rm.out242  GCCCACATAGTTGTGGTTTAGTGGTAAA-TGAGAATTG--GGGAAAGCTT
GCA_000001735.2_TAIR10.1_rm.out243  GCGCGAGCATATATAGTCCAATAGTAGGAG--GGAGCTGTGGTGAAGGGT
GCA_000001735.2_TAIR10.1_rm.out248  --------ATTTGTGGTCTAGTGGTAAG-AGAGAATTA--GAGAAATGTT
GCA_000001735.2_TAIR10.1_rm.out249  -------------TGTTCTAGTGGTGAT-TGAGAATTG--AAGAAAGGTT
GCA_000001735.2_TAIR10.1_rm.out254  -CCCAAGCATACATGGTCTAGTGGTAGAAGAAGTTTT---GGTGTAAGGG
GCA_000001735.2_TAIR10.1_rm.out258  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out262  ---CAAACATATGTGGTCTAGTGGTACG-TAAAGCTTT--GTTGAAGGGT
GCA_000001735.2_TAIR10.1_rm.out268  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out269  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out270  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out272  GCCCAAGCCTATGTTGTTTAGTGGCAAAAGAAAGTTTT--GGTGAATGGT
GCA_000001735.2_TAIR10.1_rm.out275  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out277  GTCAAAGCCTTTGTGATTTAGTGGCAGA-GGAAGCTTT--GGTGAAAGGT
GCA_000001735.2_TAIR10.1_rm.out280  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out284  GCCCAAGCATTTGTGGTCCAGTGGTAGGAGAAGATTT---GGGGAAGGGT
GCA_000001735.2_TAIR10.1_rm.out285  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out287  -CCCAAACATCTCTGGTCTAGTGGTGGGAGAACCTTTG--GTTTA-----
GCA_000001735.2_TAIR10.1_rm.out291  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out293  GTCCAAGCATCTGTGGTCCAGTGGTAGGAGAAGATTT---GGGGAAGGGT
GCA_000001735.2_TAIR10.1_rm.out295  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out317  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out326  GCCCAAGCATCTGTGGTCCAGTGGTAGGGGAAACTTT---GGGGAAAGGT
GCA_000001735.2_TAIR10.1_rm.out340  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out342  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out353  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out354  ------------GTC-----------------------------------
GCA_000001735.2_TAIR10.1_rm.out355  --CCAAGCATTTGTTGTCTAGTGGTTGGGGAAGTTTT---AGAGAAAGGT
GCA_000001735.2_TAIR10.1_rm.out358  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out367  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out369  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out381  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out390  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out394  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out395  -CCCAAGCATTTGTGGTCCAGTCGTACGAGAAGATTT---CGGGAAGGGT
GCA_000001735.2_TAIR10.1_rm.out400  GCCCAAGTTTTTGTGGTCTAGTGATAGAAAAATCTTT---AGTGAAAGGT
GCA_000001735.2_TAIR10.1_rm.out403  GCCCAAGCCTCTGTGGTCTGGTAGCAGAGGAAGCT-TT--GGTGAAGGGT
GCA_000001735.2_TAIR10.1_rm.out405  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out408  GCCCAAGCATATGTGGTTTAGTAGTAGG-GGAAGGTTC--GGTGAATAGT
GCA_000001735.2_TAIR10.1_rm.out410  --CCAAGCATCTATAGTCTAGTGGTAAAAGGAAGTTTT--GGTAAAGAGT
GCA_000001735.2_TAIR10.1_rm.out413  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out417  ---------------------------GAGAAAACTCT--GGCGAAGGGT
GCA_000001735.2_TAIR10.1_rm.out422  ---------------GTCTAGTGGCAAG-GGAAAATTG--GAAAAATGTT
GCA_000001735.2_TAIR10.1_rm.out424  GCCCAAGCATTTGTGGTCTAGTGGTAGAAGAAGTTTTGGTGATCAAGGGT
GCA_000001735.2_TAIR10.1_rm.out437  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out446  GCCCAAGCATTTGTAATCTAGTGATAGG-AGAAACTTT--GGTGATAGGT
GCA_000001735.2_TAIR10.1_rm.out448  GCCCAAGCATCTGTGGTCCAGTGGTAGGAGAAGATTT---GGGGAAGGGT
GCA_000001735.2_TAIR10.1_rm.out452  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out463  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out464  -------------------------------AGATTT---GGGAAAGGGT
GCA_000001735.2_TAIR10.1_rm.out466  GCCGAAGCATATGTGATCTATTGGCGA--GGAAGCTTT--GGTGAAGGGT
GCA_000001735.2_TAIR10.1_rm.out475  GTCCAAGCCTCTGTGGTCTAGTGGC----GCAAGCTTT--GATGAAGGGT
GCA_000001735.2_TAIR10.1_rm.out476  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out480  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out483  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out488  GCCCAAGCATTTGTGGTATAGGGGTAGG-GGAAACTTT--GGTGAAGGGT
GCA_000001735.2_TAIR10.1_rm.out502  GCCCAAGCATATGTGGTCTAGTGGTAGGAAAAGCTTT---GGTGAAAGGT
GCA_000001735.2_TAIR10.1_rm.out505  -CTCAAGCATTTGTAGTCTAGTAGTAGGGGAAGTTTT---AGTAAATGGT
GCA_000001735.2_TAIR10.1_rm.out518  GCCTACACATTTGTGGTCTACTAGTGGT-TGAGAATTG--AAGAAATGTT
GCA_000001735.2_TAIR10.1_rm.out521  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out524  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out525  GCCCAAGCATCTGTTGTCCAGTGGTAGGAGAAGATTT---GGGGAAGGGT
GCA_000001735.2_TAIR10.1_rm.out527  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out530  GCCAAAGCTTTTATGGTCTATTGGTAGA-GGAAAATTT--GGTGAAAGGT
GCA_000001735.2_TAIR10.1_rm.out531  GTCCACATAATTGGGGTTTAGTGGTGGT-TGAGAATTA--GAGAAATATT
GCA_000001735.2_TAIR10.1_rm.out534  ---------------------TGGTAGA-GAAAATTTT--GGTCAAGAGT
GCA_000001735.2_TAIR10.1_rm.out537  GCCCAAGCATTTGTGGTCCAGTGGTAAGAGAAGATTT---GGGGAAGGGT
GCA_000001735.2_TAIR10.1_rm.out540  -------------------AGTGGTAGG-AGAAGCTTT--GATGAAGAAT
GCA_000001735.2_TAIR10.1_rm.out541  -------------------------AGG-GAAAGTTTT--GGTGGATGAT
GCA_000001735.2_TAIR10.1_rm.out543  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out545  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out547  -CCCACACATATGTGGTTAAATGGCGGT-TGAGAATTG--AGAAAAAGTT
GCA_000001735.2_TAIR10.1_rm.out551  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out552  GCCCAAGCCTTTGTGGTCTAATGGCAGAAGGAAGCTTT--AGTGAAGGGT

GCA_000001735.2_TAIR10.1_rm.out4    -------------------------------------------------T
GCA_000001735.2_TAIR10.1_rm.out10   --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out24   GGAAGGAACTAATCCAAGTTAAATC-CACTCTAAAAACA-AAACTCACAT
GCA_000001735.2_TAIR10.1_rm.out26   AAAATTTCCAGATCCGAATTCGATT-TTTCTTAGAAACA-ATAAACACAT
GCA_000001735.2_TAIR10.1_rm.out28   --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out38   GAAACTCCCAAAGCCGAATTCGATC-TTCTCTGAAAAC--ATAATCACAT
GCA_000001735.2_TAIR10.1_rm.out47   --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out54   GAAACTTCCATATTCGAGTTCAATC-TT----------------------
GCA_000001735.2_TAIR10.1_rm.out66   GGAAGGAACTAACCTAAGTTCAATC-CACCTTACAAACA-AAAATCACAT
GCA_000001735.2_TAIR10.1_rm.out69   --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out79   AAAACTCCTAAATCCGAGTTCAATC-ATATTTGAAAACA-AAAATGACAT
GCA_000001735.2_TAIR10.1_rm.out90   --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out93   --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out100  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out102  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out106  ---------------------------TCCCTGGAAACA-GAAATCACAT
GCA_000001735.2_TAIR10.1_rm.out107  -----------------GTTTAATC-TATGCTCAAAACA-AAAATCACAT
GCA_000001735.2_TAIR10.1_rm.out112  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out121  TTAACTCCTATACCTGAGTTTGATT-TTTCATGAAAAC--AATAACAAAT
GCA_000001735.2_TAIR10.1_rm.out125  -----------------------------------AAAC-AAAAACATAT
GCA_000001735.2_TAIR10.1_rm.out132  -----------------TTCG-ATT-CTTCCTGGAAAC--AAAATCACAT
GCA_000001735.2_TAIR10.1_rm.out133  -----------GATGAAACTC-TTA-GACCCGAGTTCG--ATTCTCCTTG
GCA_000001735.2_TAIR10.1_rm.out138  TGAAGAAACTAACTCAAGTTCAAATTCATCTTAAAAACA-AAAGTTATAT
GCA_000001735.2_TAIR10.1_rm.out141  AAAAC---------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out145  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out146  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out160  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out163  GAAATTCTCAGACCCGAGTTCAGTC-CTCTCTGAAAACA-AAAATCACAT
GCA_000001735.2_TAIR10.1_rm.out178  -------------------------------------------ATCACAT
GCA_000001735.2_TAIR10.1_rm.out185  GAAACTTGTAGATCCGAGTTCGATC-CTCCCTGAAAACAAAAATCATATT
GCA_000001735.2_TAIR10.1_rm.out194  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out197  --------------------TTCGATCTTCTATCAAAAG-AAAATTATAT
GCA_000001735.2_TAIR10.1_rm.out211  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out212  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out219  GAAACTTCCGGACTCGAGTTCGATG-TTTTTTGGAAACA-AAAATTATAT
GCA_000001735.2_TAIR10.1_rm.out230  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out233  GAAACTTTCAGAGCTGGGTTCGATC-CTCCCTGGAAACA-AAAATCACAT
GCA_000001735.2_TAIR10.1_rm.out235  CTAAAACACTCTCCAAGGGTTCGAG-CTTTCCTAAAACA-AATATCACAT
GCA_000001735.2_TAIR10.1_rm.out236  CTAAAACACTCTCCAAGGGTTCGAG-CTTTCCTAAAACA-AATATCACAT
GCA_000001735.2_TAIR10.1_rm.out242  CAAAGAAACTAACTCAAGTGTAATC-TATCTTAAAAACA-AAAATTACAT
GCA_000001735.2_TAIR10.1_rm.out243  GAAACTTCCAAATCCGAGTTCGATC-CTCAATGAAAATA-AAAATCACAT
GCA_000001735.2_TAIR10.1_rm.out248  GAAAGGAATTAACCCAAGTTCAATC-CACCCTAGAAACA-AAAATTATAT
GCA_000001735.2_TAIR10.1_rm.out249  GAAAGGAACTAATCCATGTTTGGTC-CACCCTCGAAACA-AAAAAA-ATT
GCA_000001735.2_TAIR10.1_rm.out254  AAAACTTTTAGATCCGAGTTCGATT-TTTCTTGTAAACAAAAACAC----
GCA_000001735.2_TAIR10.1_rm.out258  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out262  GAAACTTGTAAACTCGAGTTCGATC-CTCTCTAAAAAAC-AAAAAT-CAT
GCA_000001735.2_TAIR10.1_rm.out268  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out269  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out270  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out272  AAAACTCTGATACCTAAGTTCGATT-ATCCCTAAAAAC--AAAAATACAT
GCA_000001735.2_TAIR10.1_rm.out275  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out277  GAAATTTCCAAATCCGAGTTCGATT-CTTCATAGAAACA-AAAGTGCGTT
GCA_000001735.2_TAIR10.1_rm.out280  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out284  GAAACT--------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out285  ------------------------------------------------AT
GCA_000001735.2_TAIR10.1_rm.out287  -----------TGGTAAAATTCTTA-GACCCGAATTCG--ATCCTCTTTA
GCA_000001735.2_TAIR10.1_rm.out291  -----------------------------------------AAATCACAT
GCA_000001735.2_TAIR10.1_rm.out293  GAAACTTTCAGACCTGGGTTCGATG-CTC-CTGGAAACA-AAAATCACAT
GCA_000001735.2_TAIR10.1_rm.out295  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out317  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out326  GAAACTCTCAGACTTGAGTTCGATC-CTCTCTGGAAACAAAAAATTACAT
GCA_000001735.2_TAIR10.1_rm.out340  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out342  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out353  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out354  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out355  GCAACTTCCAGACCTGAGTTCGATC-TTCCTTGGAAACA-AAAATCACAT
GCA_000001735.2_TAIR10.1_rm.out358  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out367  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out369  -----TTCCGGATCCGAGTTTGATC-TTCTTTAGAAACA-AAAATTATAT
GCA_000001735.2_TAIR10.1_rm.out381  -------------------------------------------AT--CAC
GCA_000001735.2_TAIR10.1_rm.out390  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out394  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out395  GAAACTTCCAGACCTGAGTTTGATC-TTCCCTGAAAACA-AAAATCACAT
GCA_000001735.2_TAIR10.1_rm.out400  GAAACTGCCAGATCCAAATTCGATT-TTTCCTGAAAACAAATATGGGA--
GCA_000001735.2_TAIR10.1_rm.out403  GAAACTCTCAGACCCAAGTTCGATT-CTCCCTGAAAAC--AAAAACACAT
GCA_000001735.2_TAIR10.1_rm.out405  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out408  GAAACGTAAAGACCCGAGTTCGATC-CTCCTGAAAACAA-AAAACA-C--
GCA_000001735.2_TAIR10.1_rm.out410  GAAACTTCCAGAGTTCGATTTT------CTCTAAAAACA-AAAACACATT
GCA_000001735.2_TAIR10.1_rm.out413  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out417  GAAACTCCCATATCTAAATTCGATT-CTTTCTTAGAAT--AAAATTATAT
GCA_000001735.2_TAIR10.1_rm.out422  AAAAGAAATTAACCCATATTCGATC-CACTTGGTAAAGA-AAAATTACAT
GCA_000001735.2_TAIR10.1_rm.out424  GAAACTCTCATATCCGAATACGATC-CTCCTTGAAAACA-AAAATCATTT
GCA_000001735.2_TAIR10.1_rm.out437  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out446  GAAACTCTCAGATCCGAGTTTGAAT-ATCCCGTGGTATT-AGTTAG-A--
GCA_000001735.2_TAIR10.1_rm.out448  GAAACTTCCAGACCTGGGTTCGATC-CTCTCTGAA-ACA-AAAATCACAT
GCA_000001735.2_TAIR10.1_rm.out452  ----------------------------------------------ACAT
GCA_000001735.2_TAIR10.1_rm.out463  -----------------------------------------AAATCACAT
GCA_000001735.2_TAIR10.1_rm.out464  AAAACTTCCAGACCTGGGTTCGATC-CTCCCTGAAAACA-AAAATCACAT
GCA_000001735.2_TAIR10.1_rm.out466  GAAACTCCCTGACCCAGATTTGATC-CTCA--------------------
GCA_000001735.2_TAIR10.1_rm.out475  GAAACCTTCGTACCTAAGTTCCATT-TTCTTTTGAAACA-AAATTACA--
GCA_000001735.2_TAIR10.1_rm.out476  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out480  ------------------------------------------------AT
GCA_000001735.2_TAIR10.1_rm.out483  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out488  GAAACTCCCAACCCGGTTTCGATCC-TCCC--------------------
GCA_000001735.2_TAIR10.1_rm.out502  GAAATTTCCAAAACAAATTTTAATC-TTCTCTAAAAA---AAAAACACAT
GCA_000001735.2_TAIR10.1_rm.out505  GAAATTCCT-AAACCAAATTCGATT-ATCTTTGGAAAC--AAAAACACAT
GCA_000001735.2_TAIR10.1_rm.out518  GAAAGGAACTAATACATGTTCAATC-CACCTAAGAAACA-AAAAAAAAAC
GCA_000001735.2_TAIR10.1_rm.out521  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out524  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out525  GAAACTTTCAGATCCGAGTTCGATC-CTCCCTGAAAACA-AAAATCACAT
GCA_000001735.2_TAIR10.1_rm.out527  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out530  GAAACTTTCATATCCGAATTCGATT-CTCTTTGTAAACA-AAAACA-TAA
GCA_000001735.2_TAIR10.1_rm.out531  GAAAGAAACTAACCCTGGTTTAATA-AACTTTGAAACAA-AAAAATACAT
GCA_000001735.2_TAIR10.1_rm.out534  GAAATTTTTATATCTAAGTTCGACC-ATCTTTGGAAAA---AAAACACAT
GCA_000001735.2_TAIR10.1_rm.out537  AAAACTTCCAGACCCGAGTTCGATC-CTCTATGGAAACA-AAAATCACAT
GCA_000001735.2_TAIR10.1_rm.out540  GAAACTCCTACACCCGTGTTGGATC-TTTTCTGAAAACA-GAAACA-TAT
GCA_000001735.2_TAIR10.1_rm.out541  GAAACTCCATGATCCGAATTCGATC-TTCTT--GTAAAC-AAAAACACAT
GCA_000001735.2_TAIR10.1_rm.out543  --------------------------------------------TTACAT
GCA_000001735.2_TAIR10.1_rm.out545  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out547  GGAAGGAACTAATCCAAATTCGAGC-CATCCTAAAAACA-AAAAATAAAT
GCA_000001735.2_TAIR10.1_rm.out551  ----------------------------------------------TCAC
GCA_000001735.2_TAIR10.1_rm.out552  GAAATTCCCAAACGTAAGTTCTATT-TTCCTTGAAAACA-AAATCACA-T

GCA_000001735.2_TAIR10.1_rm.out4    TTATTTG----GGAAGTCTGTCAGTTGAGCTTTGC-------CCCAA-TT
GCA_000001735.2_TAIR10.1_rm.out10   --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out24   ATGTG----TGAGAAGTCTAAACTTGGACCAAAGG-------CTCAA-CC
GCA_000001735.2_TAIR10.1_rm.out26   TTGTTTAAGAGGT--------CAGTTGGGACTTGG-------CCCAA-TT
GCA_000001735.2_TAIR10.1_rm.out28   --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out38   TTGTTTG----GAAAATCTGTTAGTTGGGCTTTGG-------TCCTA-TT
GCA_000001735.2_TAIR10.1_rm.out47   --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out54   --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out66   ATGTTTC----GAAAGTTTGAGTTTGAGCTAAAAG-------TTCAA-GT
GCA_000001735.2_TAIR10.1_rm.out69   --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out79   TTATTTA----GAAAGTTTGTTAGTTGAGTTTTAACCCAATTGGTTTACA
GCA_000001735.2_TAIR10.1_rm.out90   --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out93   --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out100  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out102  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out106  TTGTTTG----GGAAGTCTGTCAGTTGGGCTTTGG-------CCCAA-TT
GCA_000001735.2_TAIR10.1_rm.out107  ATGTTTG----GAAGTTTGATGTTGGATTTTGGCC-------CAAGC-AG
GCA_000001735.2_TAIR10.1_rm.out112  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out121  TTGTTTA----GAAAGTCTCTCAGTTGTGATTTGG-------TCCAA-TT
GCA_000001735.2_TAIR10.1_rm.out125  TTGTTTA----GAAAATCTATTAGTTGTTTTTTGA------CCTAATTGG
GCA_000001735.2_TAIR10.1_rm.out132  TTGTTTG----GAAAGTCTGTCAGTTGGGCTTTGG-------CCCAA-TT
GCA_000001735.2_TAIR10.1_rm.out133  AAAGTTG----GTAAGTGTATAAGTTGGGTCTTGG-------TTTAA-TT
GCA_000001735.2_TAIR10.1_rm.out138  ATATGTG----AGAAATCTGGATTTGGGCCAAAAA-------GTTTA-CA
GCA_000001735.2_TAIR10.1_rm.out141  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out145  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out146  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out160  ----------------------AGTTAGAATTTGT-------TCTAA-TT
GCA_000001735.2_TAIR10.1_rm.out163  TTGTTTG----GGAAGTCTGTCAGTTGGGTCTTGA-------CCCAA-TT
GCA_000001735.2_TAIR10.1_rm.out178  TTGTTTG----AAAAGTCTATTAGTTGGGTTTTGC------CCCAATTAG
GCA_000001735.2_TAIR10.1_rm.out185  TGTTTTG----AGAAGTCTCTCAGTTAGGCCTTGG-------GTCAA-TT
GCA_000001735.2_TAIR10.1_rm.out194  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out197  TCATGTA----GGATGTCTAGGTTTGGTCCAGACA-------AGTTA-AA
GCA_000001735.2_TAIR10.1_rm.out211  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out212  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out219  TTGTTTG----GGAAGTCATTTAGTTGGGGCTTAA-------CCCAA-TT
GCA_000001735.2_TAIR10.1_rm.out230  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out233  TTGTTTG----GAAAGTCTGTCAGTTGGGCTTTAG-------CCCAA-TT
GCA_000001735.2_TAIR10.1_rm.out235  TTATATC----GAAAATCTAGATTAGA-CCCTAAC-------AGTTT-AT
GCA_000001735.2_TAIR10.1_rm.out236  TTATATC----GAAAATCTAGATTAGA-CCCTAAC-------AGTTT-AT
GCA_000001735.2_TAIR10.1_rm.out242  GTGTGGA----A--AGTTTGGGTTTGGGCCAAAAC-------AGTTC-A-
GCA_000001735.2_TAIR10.1_rm.out243  TTGTTTG----GAAAATCTGTCAGTTGGATCTTAG-------TCTAG-TT
GCA_000001735.2_TAIR10.1_rm.out248  ATGGGTG----AGAAGTCTAGG----------------------------
GCA_000001735.2_TAIR10.1_rm.out249  ATATTTGTGTGAGATGTCTGGGTTTGAGCCAAATA-------CCTAA-AC
GCA_000001735.2_TAIR10.1_rm.out254  -------------AAGTCTGTTAGTTGGGGTTTGA-------CCTAA-TT
GCA_000001735.2_TAIR10.1_rm.out258  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out262  ATTTGTATGGGAAATCTGTCAGTTGG------------------------
GCA_000001735.2_TAIR10.1_rm.out268  -------------AAGTCTGTCAGTTGGGCATTGA-------CGTAC-TT
GCA_000001735.2_TAIR10.1_rm.out269  -------------AAGTCTGTCAGTTGGGCATTGA-------CGTAC-TT
GCA_000001735.2_TAIR10.1_rm.out270  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out272  TTGTTTG----GGAAGTCTGTCACTTGGGTCTTTG-------TCCAA-CT
GCA_000001735.2_TAIR10.1_rm.out275  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out277  TG---------TATGATTTATCAATTGGGTTTTGG-------TCCAA-CT
GCA_000001735.2_TAIR10.1_rm.out280  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out284  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out285  TTGTTTG----GGAAGTCTGTCTGTTGGGCG-TAG-------CCCAA-TT
GCA_000001735.2_TAIR10.1_rm.out287  AAAACA----------AAAATCAC--------------------ATT-TG
GCA_000001735.2_TAIR10.1_rm.out291  TTGTTTG----GGAAGTCTGTCAGTTGGGCTTTTG-------CCTAA-TT
GCA_000001735.2_TAIR10.1_rm.out293  TTGTTTG----GGAAGTCTGTCAGTTGGGCTTTGG-------CCCAA-TT
GCA_000001735.2_TAIR10.1_rm.out295  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out317  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out326  TTGTTTG----GAAAGTCTGTCAGTTGGGTCTTGA-------CCTAA-TT
GCA_000001735.2_TAIR10.1_rm.out340  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out342  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out353  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out354  ------G----ATTAGTCTAGACTTCGGCCTAATC-------AGCTTATA
GCA_000001735.2_TAIR10.1_rm.out355  TTGTTTG----GGAAGTCTGTCAGTTGGATTTTGT-------TCCAA-TT
GCA_000001735.2_TAIR10.1_rm.out358  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out367  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out369  TTGTTTA----GAAAGTCTGTCAGTTGGGTTTTGG------CCCAATTGA
GCA_000001735.2_TAIR10.1_rm.out381  ATTTGTTTA--GGAAATATGTTAGTAAGACCTTGG-------TCCAA-TT
GCA_000001735.2_TAIR10.1_rm.out390  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out394  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out395  TTGTTTG----GGAAGTCTGTCAGTTGGGTTTTTG-------CCCAA-TT
GCA_000001735.2_TAIR10.1_rm.out400  --------------CGTCTGTTACTTGGATG-TTC-------GCCCA-AA
GCA_000001735.2_TAIR10.1_rm.out403  TTGTTT--------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out405  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out408  ATTTGTTAGGAAATTTTGTCTATTGAAAACCTTGT-------CCCAA-TT
GCA_000001735.2_TAIR10.1_rm.out410  TGTTTGGAAAGAAGT------CAG---TTGGGCTT-------TGGCC-CT
GCA_000001735.2_TAIR10.1_rm.out413  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out417  TTATTTG----GAAAATTTATCGGTTGGGTCGTGC-------TTTAA-TT
GCA_000001735.2_TAIR10.1_rm.out422  TTGTGTG----GAAAATTTGGGTTTGGACTTTAGT-------CTAAG-CA
GCA_000001735.2_TAIR10.1_rm.out424  TCGTTTG----GAAAGTCTGTCAGTTGGACCTTGG-------TCCAA-TT
GCA_000001735.2_TAIR10.1_rm.out437  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out446  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out448  TTGTTTG----GGAATTCTGTCAGTTGGGATTTGG-------CCCAA-TT
GCA_000001735.2_TAIR10.1_rm.out452  TTGTTTG----GGAAGT-------CTGGCAGTTAT-------TCCAA-TT
GCA_000001735.2_TAIR10.1_rm.out463  TTGTTTA----GGAAGTCTGTCAATTGGGTCTTAA-------CCCAA-TT
GCA_000001735.2_TAIR10.1_rm.out464  TTGTTTG----GGAAGTCTGTCAGTTGGGCTTTGG-------CCCAA-TT
GCA_000001735.2_TAIR10.1_rm.out466  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out475  -TTTGTTTG--GAAAGTTTGACAATTGGGTCTTAA-------CCTAA-TT
GCA_000001735.2_TAIR10.1_rm.out476  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out480  TTGTTTG----GAAAATCTATTAGTTAAGTTTTGGCTCAATTGA------
GCA_000001735.2_TAIR10.1_rm.out483  --------------------------------TTG-------GCCCA-AT
GCA_000001735.2_TAIR10.1_rm.out488  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out502  TTTTTTT----GGAAGTCTGTCAGTTGGGTTTTGA-------CTCAA-TT
GCA_000001735.2_TAIR10.1_rm.out505  TTGTTTC----AGAAGTCTGTCATTTGTGATTTGA-------TTTAA-TT
GCA_000001735.2_TAIR10.1_rm.out518  ATATTTGTATGAAAAGTATGAGTTTCGACCAAATA-------CGCAA-AC
GCA_000001735.2_TAIR10.1_rm.out521  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out524  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out525  TTGTTTG----GGAAGTCTGTTAATTGGTCCTTGG-------CCCAA-TT
GCA_000001735.2_TAIR10.1_rm.out527  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out530  TTACTTTTGG-AAATCTGTAAGTTG--TACTTTGA-------CCTAA-TT
GCA_000001735.2_TAIR10.1_rm.out531  GTAC--G----AGAAGTTTGGATTTGGGCCAAAGA-------TCCAA-AC
GCA_000001735.2_TAIR10.1_rm.out534  TTGTCTG----AAAAGTGTGTTAGTTGGGTTTTGGCTAAATTCTAACTGG
GCA_000001735.2_TAIR10.1_rm.out537  TTGTTTG----GGAAGTTTGTCAGTTGGGCCTTGG-------CCCAA-TT
GCA_000001735.2_TAIR10.1_rm.out540  ATTTGTTTGGGAA-------------------------------------
GCA_000001735.2_TAIR10.1_rm.out541  TTTTTTA----GGAAGTTTGTTAGTTGGGTTTTGT------TCCAATTGG
GCA_000001735.2_TAIR10.1_rm.out543  TTGTTTG----GGAAGTATATCAGTTGGGTTTTGC-------TTTAA-TT
GCA_000001735.2_TAIR10.1_rm.out545  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out547  TTGTGTG----GGAAATATGAGTTTAAGTCTTTCC-------AAGCA-AT
GCA_000001735.2_TAIR10.1_rm.out551  ATTTGTTTGGGAAATAT-----------GTGAGTT-------GGGCG-TA
GCA_000001735.2_TAIR10.1_rm.out552  TTGTTAC-------------------------------------------

GCA_000001735.2_TAIR10.1_rm.out4    GGTTTATCTGGTAGTCAGAAATGCAGGCGACCTTATTACCTCCTACCATT
GCA_000001735.2_TAIR10.1_rm.out10   --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out24   AGTTTTTCTGGTAGTTAGTAACAAGCGATTTGGTGACC------------
GCA_000001735.2_TAIR10.1_rm.out26   GATTTACATGGTAGTCAGAAACACA-------------------------
GCA_000001735.2_TAIR10.1_rm.out28   ------------------------------------CT------------
GCA_000001735.2_TAIR10.1_rm.out38   GGTTTACGTGATAGTCAGAAATGCAGGCAGTTTGATTACCTCTGGCATTA
GCA_000001735.2_TAIR10.1_rm.out47   --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out54   --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out66   AATTTACCTATTATT-CAGTAACATGCGATTTGG-CTA------------
GCA_000001735.2_TAIR10.1_rm.out69   ---------------------------GGCTTGA-CTA------------
GCA_000001735.2_TAIR10.1_rm.out79   ATTTTACATAGTGATTAGAAATATAGGCGGTTTG-ATT------------
GCA_000001735.2_TAIR10.1_rm.out90   --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out93   --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out100  ---------------------------------------CCCTTGGCATT
GCA_000001735.2_TAIR10.1_rm.out102  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out106  GGTTTACCTGGTAGTCAGAAATGCAGGCGGCCTGACTACCCCCTGGCATT
GCA_000001735.2_TAIR10.1_rm.out107  T-----------ATT-CGGATTTAAACTAA-CTG-GAT------------
GCA_000001735.2_TAIR10.1_rm.out112  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out121  AATTTATTTGGTAGTTAGAAATGCAGACGGTATGA--------TT-----
GCA_000001735.2_TAIR10.1_rm.out125  --TTAAAATGCTAGTCAGAAATATAGGCGGC-------------------
GCA_000001735.2_TAIR10.1_rm.out132  GGTTTACCTGGTAGTCAGAAATGCAGGTGGCCTGAC-------TA-----
GCA_000001735.2_TAIR10.1_rm.out133  GGTTTACTTGGTAATTAGAAATGTAGGCGGCCGCCT----GACTA-----
GCA_000001735.2_TAIR10.1_rm.out138  TTGT--------AGT-AGGTAATATCTAATCTGG-CTA------------
GCA_000001735.2_TAIR10.1_rm.out141  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out145  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out146  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out160  AGTTTATCTAGTAGTTAGAAATACAGACAATTTGACTA------------
GCA_000001735.2_TAIR10.1_rm.out163  GGTTTACCTGGTAGTCAGAAATACAGGTGGCCTGACTATCCTCTGGCATT
GCA_000001735.2_TAIR10.1_rm.out178  --ATTACCTGGTAGTCAGAAATACATGTGGCATT-TC-------------
GCA_000001735.2_TAIR10.1_rm.out185  GGTTTACCTGGTAGTTAGAAATGCAGCCGGTCTGACTATCCCCTTTCATT
GCA_000001735.2_TAIR10.1_rm.out194  ----------------------------------CAGA------------
GCA_000001735.2_TAIR10.1_rm.out197  TGGT--------AATCTGGTAACATGCGATTCAG-TTA------------
GCA_000001735.2_TAIR10.1_rm.out211  ------------------------AGGTGGTT------------------
GCA_000001735.2_TAIR10.1_rm.out212  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out219  GGTTTACTTGATAGTTAGAAATGCAGACGGCTTGACTACCCTTAG-----
GCA_000001735.2_TAIR10.1_rm.out230  ----------------------------------------------CATT
GCA_000001735.2_TAIR10.1_rm.out233  GGTTTACCTGGTAGTCAGAAATGCAGGCGGCCTGACTACCCCCTGGCATT
GCA_000001735.2_TAIR10.1_rm.out235  ATTATGATGGTAGTC-CAACAATAGGCTATATGG-CTA------------
GCA_000001735.2_TAIR10.1_rm.out236  ATTATGATGGTAGTC-CAACAATAGGCTATATGG-CTA------------
GCA_000001735.2_TAIR10.1_rm.out242  ------TATGGTAGT-CAGTAACAT----------GTA------------
GCA_000001735.2_TAIR10.1_rm.out243  AGTTTATCTGGTAGTTAAAAATGCAGGTAGTCTAATTATTTCCTAGCATT
GCA_000001735.2_TAIR10.1_rm.out248  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out249  ATCTTATCTGGTAGTCACTAATATATGATCTGGTCGAA------------
GCA_000001735.2_TAIR10.1_rm.out254  GGTTTACATGGTAATCAGAAATGCATGCGGCTTCACTACCCTTTGACATT
GCA_000001735.2_TAIR10.1_rm.out258  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out262  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out268  GGTTTACCTGGTAGTCAGAAAGGCAGGCGGTCTGAT-------TA-----
GCA_000001735.2_TAIR10.1_rm.out269  GGTTTACCTGGTAGTCAGAAAGGCAGGCGGTCTGAT-------TA-----
GCA_000001735.2_TAIR10.1_rm.out270  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out272  GGTTTACATGATAGTTAGAAATGTAGGCGGCCTTAC-------AA-----
GCA_000001735.2_TAIR10.1_rm.out275  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out277  AGTTTACCTACTAGTTAGAAGTGCAAGCGGACTGACTA------------
GCA_000001735.2_TAIR10.1_rm.out280  -----------------------------------CCT------------
GCA_000001735.2_TAIR10.1_rm.out284  ---------------------------------------TTCATAGTTCG
GCA_000001735.2_TAIR10.1_rm.out285  GGTTTACATAGTAGTCAGAAATGCAATCGGCCTGACTATCACTCGGTATT
GCA_000001735.2_TAIR10.1_rm.out287  TCTAAAAAGTCTAGTCGAAACTGTAGGCGGTCTAAC-------TA-----
GCA_000001735.2_TAIR10.1_rm.out291  GGTTTACCTGATAGTCAGAAATGCAGGCGGCCTGACTACCCCCTGGCATT
GCA_000001735.2_TAIR10.1_rm.out293  GATTTACCTGGTAGTCAGAAATGCAGGCGGCCTGACTACCCCCTGGCATT
GCA_000001735.2_TAIR10.1_rm.out295  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out317  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out326  GGTTTATCTGGTAGTCAGAAATGTAGGTGGTTTGACTATCCCCTAGCATT
GCA_000001735.2_TAIR10.1_rm.out340  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out342  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out353  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out354  AGGTAATCCGATAATAGGCGCTCCGACTATCTCT-TGA------------
GCA_000001735.2_TAIR10.1_rm.out355  GGTTTATCTGGTAGTTAGAAATGAAGGTGGTTTCT---------------
GCA_000001735.2_TAIR10.1_rm.out358  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out367  ---------------CAAAAATG----ATTGGCGGCCT------------
GCA_000001735.2_TAIR10.1_rm.out369  --TTTACCTGGTAGTCAGAAATGTAAGTGACCTG-ACT------------
GCA_000001735.2_TAIR10.1_rm.out381  GGTTCACCTGATAGTCAAAAATG---------------------------
GCA_000001735.2_TAIR10.1_rm.out390  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out394  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out395  GGTTTACCTGGTAATCAGAAAGGAAGGCGACCTGACTA-CCCCTGGCATT
GCA_000001735.2_TAIR10.1_rm.out400  TGTTTATCTAGTAGTCAGAAATGTAGGTGGCCTAACTACCCCCTGACATT
GCA_000001735.2_TAIR10.1_rm.out403  ------------GGGAAGTTTGCCAG-------GCAGCCTGACTA-----
GCA_000001735.2_TAIR10.1_rm.out405  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out408  GGTTTACATAGTAGTCAGAAATACAGACAGTCGGCTTA------------
GCA_000001735.2_TAIR10.1_rm.out410  GGTTTATCTGATAGTCAGAAATGCAGACGACCTGATTA------------
GCA_000001735.2_TAIR10.1_rm.out413  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out417  AGTTTATATGGTAGTAAGAAATGGAGACGACCTGAT-------TA-----
GCA_000001735.2_TAIR10.1_rm.out422  ATTC-ATATGGTATT-C---GAGATTAGACTAAC-GTG------------
GCA_000001735.2_TAIR10.1_rm.out424  GGTTTATCTGATAGTTAGAAATACAGACGGCCTGAGTACTTTCTGCCATT
GCA_000001735.2_TAIR10.1_rm.out437  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out446  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out448  GGTTTATCTAGTAGGCAGAAATACAGGCGGCCTGATTACCCCCTGGCATT
GCA_000001735.2_TAIR10.1_rm.out452  GGTTTATTTGGTAGTTAGAAATACACGCGGTATGACTACTCTCTGATA--
GCA_000001735.2_TAIR10.1_rm.out463  GGTTTATGTGATAGTTAGAAATGCAAACTAAGAACAGACAATGTGGTGGT
GCA_000001735.2_TAIR10.1_rm.out464  GGTTTACCTGGTAGTCAGAAATGCAGGCGGCCTGACTACCCCCTGGCATT
GCA_000001735.2_TAIR10.1_rm.out466  -----------------GAAATGTATGCGGTCTGACTA------------
GCA_000001735.2_TAIR10.1_rm.out475  AATTTATCTAGTATTTAGAAATACAGGCGGCTTGACTA------------
GCA_000001735.2_TAIR10.1_rm.out476  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out480  --TTTATCTAATAATCATAAATACATGTAGTCTG-ATT------------
GCA_000001735.2_TAIR10.1_rm.out483  TGGTTTACCTGTAGTCAGAAATGCAGGCGGTCTGACTA-CTCCTGGTATT
GCA_000001735.2_TAIR10.1_rm.out488  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out502  GATTTACATAGTAGTCAGAAATGTAAGCGGCCTGACTACACCTAGTCGGA
GCA_000001735.2_TAIR10.1_rm.out505  AGTTTATATGGTAGTTAGAATGCAGGCGGTC-TAACTAC-----------
GCA_000001735.2_TAIR10.1_rm.out518  AATTCATTTGGTAATTAGTAATAGGCGATTTGA---TG------------
GCA_000001735.2_TAIR10.1_rm.out521  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out524  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out525  GGTTAATCTGGTAGTCAGAAATGCAGGCGGCCTGACTACCCTCTGGCATT
GCA_000001735.2_TAIR10.1_rm.out527  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out530  AATTTATTTGGTAGTCGGAA------------------------------
GCA_000001735.2_TAIR10.1_rm.out531  AGTTTACACGGTAAT-CAGTAACATGCGATCTGA-CTA------------
GCA_000001735.2_TAIR10.1_rm.out534  --TTTACATGGTAGTTAGAAATGCAGGCGGTCTG-ATT------------
GCA_000001735.2_TAIR10.1_rm.out537  AGTTTACCTGGTAGTCAGAAATGCATGCGGCCTGACTACTCTCTGGCATT
GCA_000001735.2_TAIR10.1_rm.out540  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out541  --TTTACATAGT---TAGAAATGCAGACGGCTTG-ACT------------
GCA_000001735.2_TAIR10.1_rm.out543  GGTTTACCTGGTAGTTAGAAATGCAGGCGGCCTGATTATTGATTA-----
GCA_000001735.2_TAIR10.1_rm.out545  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out547  TT---ATCTGATAGTTAATAACAAACGATTTTTG-GTT------------
GCA_000001735.2_TAIR10.1_rm.out551  GATTTACTTGATAGTCAGAAATACAAGCGGTCTGACTA------------
GCA_000001735.2_TAIR10.1_rm.out552  --------------------------------------------------

GCA_000001735.2_TAIR10.1_rm.out4    ------------------------------AGTCGGAAAGCATT-CCAAT
GCA_000001735.2_TAIR10.1_rm.out10   --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out24   ------------------TC------------CTGACAAACAT-TCCAAA
GCA_000001735.2_TAIR10.1_rm.out26   --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out28   ------------------GGCATTAGC-CGAAAGATATTCCAAACTCAAA
GCA_000001735.2_TAIR10.1_rm.out38   GTT-------------------------------GGAAAGCATT-CCAAA
GCA_000001735.2_TAIR10.1_rm.out47   --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out54   --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out66   ------------------CCTCTGACAT-TAGTCAGAAAGCATT-TCAAA
GCA_000001735.2_TAIR10.1_rm.out69   ------------------CTCTCTAGCATTAGTTAGAAAATATT-TTAAA
GCA_000001735.2_TAIR10.1_rm.out79   ------------------TCGGAAAGTATTCTAA---------------A
GCA_000001735.2_TAIR10.1_rm.out90   --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out93   -------------------------------------AAGAATT-CCAAA
GCA_000001735.2_TAIR10.1_rm.out100  ------------------------------AGTCGGAAAGCATT-CCAAA
GCA_000001735.2_TAIR10.1_rm.out102  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out106  ------------------------------AGTCGGAAATCAT--CCAAA
GCA_000001735.2_TAIR10.1_rm.out107  ------------------ATCCTAAATATTAGTCAAAAAACATT-CTAAA
GCA_000001735.2_TAIR10.1_rm.out112  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out121  ------------------ATCCTTGGTATTAGTCGGAAGGCATT-TCAAA
GCA_000001735.2_TAIR10.1_rm.out125  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out132  ------------------CCCTCTGACATTAGTCGGAAGGCATT-CCAAA
GCA_000001735.2_TAIR10.1_rm.out133  ------------------CCCCCTGGCATTAGTCAGAAAGCATT-TCAAA
GCA_000001735.2_TAIR10.1_rm.out138  ------------------CC-CCTGATACTAGTCAGAAAACATT-TCAAA
GCA_000001735.2_TAIR10.1_rm.out141  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out145  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out146  ------------------------GTAT-TAGTCAAAAAACATT-TTAAA
GCA_000001735.2_TAIR10.1_rm.out160  ------------------TCCATTCACAATAGTCGGCAGGAATTTCA-AA
GCA_000001735.2_TAIR10.1_rm.out163  ------------------------------AGTCGGAAAACATT-CCAAA
GCA_000001735.2_TAIR10.1_rm.out178  -----------------------------------------------AAA
GCA_000001735.2_TAIR10.1_rm.out185  ------------------------------AGTCGGAAAACATT-TCAAA
GCA_000001735.2_TAIR10.1_rm.out194  ------------------CGATTTAGC-TACCACCAAGCATTAG-TAAAA
GCA_000001735.2_TAIR10.1_rm.out197  ------------------TGTTTAAGTGTTAATCAGTTAATATT-CTAAA
GCA_000001735.2_TAIR10.1_rm.out211  ------------TGATTATTCCCTGATATTAGTTGGAAGACATT-TCAAT
GCA_000001735.2_TAIR10.1_rm.out212  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out219  --------------------------TATTAATCGGAAAGCATT-ACAAA
GCA_000001735.2_TAIR10.1_rm.out230  ------------------------------AATTGGAAAGCATT-TCAAA
GCA_000001735.2_TAIR10.1_rm.out233  ------------------------------AGTCGGAAAGCAT--CCAAA
GCA_000001735.2_TAIR10.1_rm.out235  ------------------CTCCCAAACATTAGTATGGAAATATT-CCAAA
GCA_000001735.2_TAIR10.1_rm.out236  ------------------CTCCCAAACATTAGTATGGAAATATT-CCAAA
GCA_000001735.2_TAIR10.1_rm.out242  ------------------ATCTTTACAT-TAGTCAGAAAACATT-TTAAA
GCA_000001735.2_TAIR10.1_rm.out243  AGTCGGAAAACATTCAAATTTA----------------------------
GCA_000001735.2_TAIR10.1_rm.out248  ------------------------------------------------TT
GCA_000001735.2_TAIR10.1_rm.out249  ------------------A-------------------AA-TAGTCCAAA
GCA_000001735.2_TAIR10.1_rm.out254  AGTCG------------------------------GAAAGCATT-CCAAA
GCA_000001735.2_TAIR10.1_rm.out258  ----------------------------------------------CAAA
GCA_000001735.2_TAIR10.1_rm.out262  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out268  ------------------TCCCTTGGCATTAGTCGGAAGGCATT-CCAAA
GCA_000001735.2_TAIR10.1_rm.out269  ------------------TCCCTTGGCATTAGTCGGAAGGCATT-CCAAA
GCA_000001735.2_TAIR10.1_rm.out270  -----------------------------TAGTCAGAAAACATT-CTAAA
GCA_000001735.2_TAIR10.1_rm.out272  ------------------TCCCTTATAATTAGTCGGAAAGCATT-ATAAA
GCA_000001735.2_TAIR10.1_rm.out275  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out277  ------------------ACCCATAACATTAATCAGAAAACATTCAAATT
GCA_000001735.2_TAIR10.1_rm.out280  ------------------CGCATTAGA-------CAGAAGGCATTCCAAA
GCA_000001735.2_TAIR10.1_rm.out284  ATCCTCCCTGAAAACAAAAAAAAAAAATCACATTTGAAAGCATT-CCAAA
GCA_000001735.2_TAIR10.1_rm.out285  ------------------------------AGTCGGAAAGCATT-TCAAA
GCA_000001735.2_TAIR10.1_rm.out287  ------------------TCCAGTAGCATTAACTGAAAATTATT-ACAAA
GCA_000001735.2_TAIR10.1_rm.out291  ------------------------------AGTCGGAAAGCATT-TCAAA
GCA_000001735.2_TAIR10.1_rm.out293  ------------------------------AGTCGGAAAGCAT--CCAAA
GCA_000001735.2_TAIR10.1_rm.out295  --------------------------------------------TTTTAA
GCA_000001735.2_TAIR10.1_rm.out317  ----------------------------TTAGTCGAAAATCATT-CCAAA
GCA_000001735.2_TAIR10.1_rm.out326  ------------------------------AGTCTGAAAGCAT--TCAAA
GCA_000001735.2_TAIR10.1_rm.out340  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out342  -------------------------------------------------A
GCA_000001735.2_TAIR10.1_rm.out353  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out354  ------------------GTCCTTATATTTGTTAGAAAGCCATT-TCAAA
GCA_000001735.2_TAIR10.1_rm.out355  -----------------------TGGCATTAGTCGGAAAACATT-CCAAA
GCA_000001735.2_TAIR10.1_rm.out358  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out367  ------------------GACTCTGGC-ATTAGTCGGAAGGCGTTCCAAA
GCA_000001735.2_TAIR10.1_rm.out369  ------------------ACCCTTGACATTAGTCAGAAAACATT-CTAAA
GCA_000001735.2_TAIR10.1_rm.out381  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out390  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out394  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out395  ------------------------------AGTCGGAAAGCATT-CTAAA
GCA_000001735.2_TAIR10.1_rm.out400  ------------------------------AATTTGAAAGCATT-TCAAA
GCA_000001735.2_TAIR10.1_rm.out403  ------------------TTCCATAGCATTAGTCGGAAAACATT-CTAAA
GCA_000001735.2_TAIR10.1_rm.out405  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out408  ------------------CCCCTTGACATTAGTCGAAAAACATTATA-AA
GCA_000001735.2_TAIR10.1_rm.out410  ------------------CTTG----------------------------
GCA_000001735.2_TAIR10.1_rm.out413  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out417  ------------------TTCTATAACATTAGTCGAAAGACATT-TCAAA
GCA_000001735.2_TAIR10.1_rm.out422  ------------------ATTCCGAGTATCAGTCGAAACACATT-CCAAA
GCA_000001735.2_TAIR10.1_rm.out424  AGTTGGAGTAGAGTTTGTCTCCCTGACATTAGTCGGAAAGCATT-TCAAA
GCA_000001735.2_TAIR10.1_rm.out437  ---------------------CTTGACATTAGTCGAAAAACATT-TGAAA
GCA_000001735.2_TAIR10.1_rm.out446  -------------------------------------AAA-CATTTA-AA
GCA_000001735.2_TAIR10.1_rm.out448  ------------------------------AGTCGGAAGGCAT--CCAAA
GCA_000001735.2_TAIR10.1_rm.out452  ----------------------------TTAGTCGGAAAGTATT-CCAAA
GCA_000001735.2_TAIR10.1_rm.out463  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out464  ------------------------------AGTCGGAAAGCAT--CCAAA
GCA_000001735.2_TAIR10.1_rm.out466  ------------------CCTCCTGCCATTAATAAAATAATATTTTA-AA
GCA_000001735.2_TAIR10.1_rm.out475  ------------------ACCCCT--------------------------
GCA_000001735.2_TAIR10.1_rm.out476  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out480  ------------------AACCCTGTTATTAGTTAGAAAACATT-TAAAA
GCA_000001735.2_TAIR10.1_rm.out483  ------------------------------AGTCGGAAAGCATT-CCAAA
GCA_000001735.2_TAIR10.1_rm.out488  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out502  AAA-------------------------------------TGTT-CTAAA
GCA_000001735.2_TAIR10.1_rm.out505  -------------------TCCTTGAAATAACTTGAAAAACACT-CTAAA
GCA_000001735.2_TAIR10.1_rm.out518  ------------------ATCCAAGATATTACTCGTAACACATTTGAAAA
GCA_000001735.2_TAIR10.1_rm.out521  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out524  -----------------------------------------ATT-CTAAA
GCA_000001735.2_TAIR10.1_rm.out525  ------------------------------AGTCGGAAAGCATT-CCAAA
GCA_000001735.2_TAIR10.1_rm.out527  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out530  --------------------------------------GACATTCCA-AA
GCA_000001735.2_TAIR10.1_rm.out531  ------------------CTTTCTAACGTTACTCAGAAAGTATT-CCAAA
GCA_000001735.2_TAIR10.1_rm.out534  ------------------ATCCATGAAATTCG---GAAAACACT-CCAAA
GCA_000001735.2_TAIR10.1_rm.out537  ------------------------------AGTCGGAAAGCATT-CCAAA
GCA_000001735.2_TAIR10.1_rm.out540  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out541  ------------------AACCACTGCATTAGTTAAAAGGCGCT-CCAAA
GCA_000001735.2_TAIR10.1_rm.out543  ------------------TATTCTGACATTAGTCGGAAGACATT-CTAAA
GCA_000001735.2_TAIR10.1_rm.out545  -----------------------------------GAAAACATT-TCAGA
GCA_000001735.2_TAIR10.1_rm.out547  ------------------ATCTTTGATATTAGTTGGAAATCATT-TCAAA
GCA_000001735.2_TAIR10.1_rm.out551  ------------------TCCCTA--------------------------
GCA_000001735.2_TAIR10.1_rm.out552  --------------------------------------------------

GCA_000001735.2_TAIR10.1_rm.out4    CTCGGGACATACAGTGTGGTGGTCCTTCGGA------------AGAAGTT
GCA_000001735.2_TAIR10.1_rm.out10   ----------------------------------------------AGTC
GCA_000001735.2_TAIR10.1_rm.out24   TGTGGGACATACAGTATGGTGGCCCTTT-----------AGAGAGAAGTC
GCA_000001735.2_TAIR10.1_rm.out26   --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out28   ATCGGATCAGATAGTGTGGTGGTCTAATTTTACCTGGATCGGGAGATGTC
GCA_000001735.2_TAIR10.1_rm.out38   C-ATGGATACACATTGTGGTAGTCCATTGGA-----------GAGAAGAC
GCA_000001735.2_TAIR10.1_rm.out47   ----------------------------------------GAGAGAAGTC
GCA_000001735.2_TAIR10.1_rm.out54   --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out66   ATCGGAACCGACGGT------GTGGT----GGGCTTT-TAGAGAGAAGTC
GCA_000001735.2_TAIR10.1_rm.out69   CTCGAAACAAATAAT------ATAGT---GGTCCTTC-GAAAAAAAATCT
GCA_000001735.2_TAIR10.1_rm.out79   CACCGGATA-----------------------------------------
GCA_000001735.2_TAIR10.1_rm.out90   -------------------------------------------GAAGTCA
GCA_000001735.2_TAIR10.1_rm.out93   CTCGAGACAGACAG---TGTGGTCTTTCGGG-----------GAGAAGTC
GCA_000001735.2_TAIR10.1_rm.out100  CTCAGGACAGACAGTGTGGTGGTCCTTCGGG-----------GAGAAGTC
GCA_000001735.2_TAIR10.1_rm.out102  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out106  CTCGGGATAGACAGTGTGGTGGTCCTTCGGG-----------GAGAAGTC
GCA_000001735.2_TAIR10.1_rm.out107  TTTGGGATAGATAGT------ATCGT---GATCTTTC-GGAGAGAAACAC
GCA_000001735.2_TAIR10.1_rm.out112  --------AAATAGT------ATTAT---GGTCCTTC-AAGGAAAAGTCT
GCA_000001735.2_TAIR10.1_rm.out121  TTAGAACCTAACAGTGTGGTGATCCAATTCTACCTAAATCGGGAGAAATT
GCA_000001735.2_TAIR10.1_rm.out125  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out132  CTCGGACCAGGCAGTGTGGTGGTCCAATTCTACCTGGATCGGGAGAAGTC
GCA_000001735.2_TAIR10.1_rm.out133  CTCGTGACAGACAGACAGTATG-------GTGGTTTTTCGGGAAGAAGTC
GCA_000001735.2_TAIR10.1_rm.out138  CTCGAAATAGACAAT------GTGGT----GACCTTT-CGGAAAAAAATT
GCA_000001735.2_TAIR10.1_rm.out141  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out145  --------------TGTGGTTGTCTTTC-----------AGAAAAAA---
GCA_000001735.2_TAIR10.1_rm.out146  TTCGAGATAGACAAT------GTGAT----ATTCTTT-TGGGGAGAAGTC
GCA_000001735.2_TAIR10.1_rm.out160  CTCGAAGAAAGACGTGTGGTAACCCAATTCTACGGAT--CGAGAATAGTC
GCA_000001735.2_TAIR10.1_rm.out163  CTCGGGACAAATAGTGTGGTGGTACTTCGGA-----------AAGAAGTC
GCA_000001735.2_TAIR10.1_rm.out178  TTCGGAACAGACAGT------ATGGT---AGTCCTT--AAGGGAGAAATC
GCA_000001735.2_TAIR10.1_rm.out185  TTCAGAACAGACAGTATGGTAGTCCTTCGGT-----------GAGAAGTC
GCA_000001735.2_TAIR10.1_rm.out194  ----AATTATTTTCATAATAGATAGAATGGTGATTTTGTAGGAAAAAGTC
GCA_000001735.2_TAIR10.1_rm.out197  CTCGGAATAAATGTG---------TG----ATGATCCTTGAATATAAATT
GCA_000001735.2_TAIR10.1_rm.out211  TTCGGATTAGACAGTGTGGTGGCCC-------------------------
GCA_000001735.2_TAIR10.1_rm.out212  ----------------------------------------------AGTC
GCA_000001735.2_TAIR10.1_rm.out219  TTCGGGACAGACAATGTGGTGGTCCTTTGGG-----------AAAAAGTC
GCA_000001735.2_TAIR10.1_rm.out230  CTCGGGATAGTAAGTGTGGTGG----------------------------
GCA_000001735.2_TAIR10.1_rm.out233  TTCGGGACAGACAGTGTGGTGGTCTTTCGGG-----------GAGAAGTC
GCA_000001735.2_TAIR10.1_rm.out235  TTCGAGATAAGCAGT------GTAGC---GGTCATTT-AAGAAAAAAATC
GCA_000001735.2_TAIR10.1_rm.out236  TTCGAGATAAGCAGT------GTAGC---GGTCATTT-AAGAAAAAAATC
GCA_000001735.2_TAIR10.1_rm.out242  TTTAGGACCGACATT------GTGAT----GGTTTTT-CGGGGAAAAATC
GCA_000001735.2_TAIR10.1_rm.out243  ----AGATAGACATTGTGGTGACTTTTCGGG-----------AAGTAGTC
GCA_000001735.2_TAIR10.1_rm.out248  TGGGCCAAAGATAGGAGGGTGGCTTTTC-----------GGAGAGAATTC
GCA_000001735.2_TAIR10.1_rm.out249  TTCAGAACAAACAGTGTAGTGGCCCTTT-----------TGAAAAAAATG
GCA_000001735.2_TAIR10.1_rm.out254  CTCGGAATAGTGACAATTCGA--------------------GGAAAAGTC
GCA_000001735.2_TAIR10.1_rm.out258  CTCGGATCAGGCAGTGTGGTGGCCCAATTCTACTTGAATCGGG-GAAATT
GCA_000001735.2_TAIR10.1_rm.out262  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out268  CTCGGACCAGAGAGTGTGGTAGTCCAATTCTACCCGAATCGGGAGAAGTC
GCA_000001735.2_TAIR10.1_rm.out269  CTCGGACCAGAGAGTGTGGTAGTCCAATTCTACCCGAATCGGGAGAAGTC
GCA_000001735.2_TAIR10.1_rm.out270  TTTGGGACAAACATGCA-AT-GTGGT---GGTTCTTCCGGAAGAAATCCA
GCA_000001735.2_TAIR10.1_rm.out272  TTCGGATCAGACTGTATGGTAGCTCAATTCTACCTGTATCGAGAGAAGTC
GCA_000001735.2_TAIR10.1_rm.out275  -------------------------TTCGGT-----------TTGAAGTC
GCA_000001735.2_TAIR10.1_rm.out277  CGA--ATTGGACGGTGTAATGGTCTAATTCTACTTAAATCGGGAAAAATC
GCA_000001735.2_TAIR10.1_rm.out280  CTCGGACCAGGCAGTGTGGTGGCTCAATTCTATCTGGATCGAGAGAAGTC
GCA_000001735.2_TAIR10.1_rm.out284  CTCGGGACAGACAGTGTGGTGGTCTTTCGGG-----------GAGAAGTC
GCA_000001735.2_TAIR10.1_rm.out285  CTCGAGACAAACAATGTGGTTCCTTCGGA-------------GAGAAGTC
GCA_000001735.2_TAIR10.1_rm.out287  TTCGAAAT-----------AGACAGAATAGTGGTCTTTCGTGGAGAAGTC
GCA_000001735.2_TAIR10.1_rm.out291  CTCCGGACAGACAGTGTGGTGGTCCTTCAGG-----------GAGAAGTC
GCA_000001735.2_TAIR10.1_rm.out293  CTCGGGACAGACAGTGTGGTGGTCCTTCGGG-----------AAAAAGTC
GCA_000001735.2_TAIR10.1_rm.out295  ACTCGGATTAGTAGTGTAGTGGCCCAATTCTATGTAGATCGGGAGAAGTC
GCA_000001735.2_TAIR10.1_rm.out317  CTCGGAACATACATTGTGGTGTTTATTTGGG-----------AAGAAGTC
GCA_000001735.2_TAIR10.1_rm.out326  CTCGGAACAGACAGTGTGGTGATCCTTCTGA-----------AAGAAGTC
GCA_000001735.2_TAIR10.1_rm.out340  ------------AGTATAGTAGTCCTCT-----------GGGAAGAAGTC
GCA_000001735.2_TAIR10.1_rm.out342  TTCTAAACAGACAATGTGGTGGTCCATTTCTACACGGATCGAGAGAAATC
GCA_000001735.2_TAIR10.1_rm.out353  ---------------------------------CCTT-TAAAGAAAACTC
GCA_000001735.2_TAIR10.1_rm.out354  CTCGGATTAGGCAAT------GTGAT----GGTCTTC-TGGGAAGAATTT
GCA_000001735.2_TAIR10.1_rm.out355  TTCGGGACAGACAATGTGGTGGTTCTTTGGA-----------GAGAAATC
GCA_000001735.2_TAIR10.1_rm.out358  -------------------------------------------AAAAGTT
GCA_000001735.2_TAIR10.1_rm.out367  CTCGGTTCAGGCAGTGTGGTGGCCCACCTG------GATCGGGAGAAGTT
GCA_000001735.2_TAIR10.1_rm.out369  CTCGAGATAAACACT------GTGGT---AGTTCTT--TAGAAAGAAGTC
GCA_000001735.2_TAIR10.1_rm.out381  --------------TGTGGTGGTCCTTC-----------AGGAAGAAGTC
GCA_000001735.2_TAIR10.1_rm.out390  --------AAACAGTGTGGTAGTTTTTTGGA-----------GAGAAGTC
GCA_000001735.2_TAIR10.1_rm.out394  ----------------------------------------GGGAGAAGTC
GCA_000001735.2_TAIR10.1_rm.out395  CTCGGGACAGACAATGTGGTAGTCCTTCGGG-----------GATAAGTT
GCA_000001735.2_TAIR10.1_rm.out400  CTCGGATCATGCAATGTGGTGGCCCAATTCTACATGGATCGGGAGAAATT
GCA_000001735.2_TAIR10.1_rm.out403  CTCGAATGAGGCAGTGTGGTGGCCCAATTCTACATGGATTTGAAGAAGTC
GCA_000001735.2_TAIR10.1_rm.out405  --------------------------------------------GAAGTC
GCA_000001735.2_TAIR10.1_rm.out408  CTCAAGACGGACAGTGTGGTGACCCTTC-----------GGGAAGAA---
GCA_000001735.2_TAIR10.1_rm.out410  ---------------------------------------TTTGAGAAGTC
GCA_000001735.2_TAIR10.1_rm.out413  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out417  CTCGAATCTGGTAGTGTGGTGGTCTAACTCTACCTGGATCGGGAATAGTC
GCA_000001735.2_TAIR10.1_rm.out422  TTTGGAACAGACGGT------ATGGT---GATCCTTC--GGAGAAAAGTT
GCA_000001735.2_TAIR10.1_rm.out424  CTCGGGAAATATAGTGTGGTGGTCCTTCGAG-----------GAGAAGTC
GCA_000001735.2_TAIR10.1_rm.out437  CTCGGTTATACAATGAGGTTATCGTT---CAGGCCTCTGGAAAGAAAATC
GCA_000001735.2_TAIR10.1_rm.out446  TTCGGGACAGATAGTGTTGTGGTCCTTC-----------GGGAAAAG-TT
GCA_000001735.2_TAIR10.1_rm.out448  TTCGGGACAGATAGTGAGGTGGTCCTTCGGA-----------AAGAAGTC
GCA_000001735.2_TAIR10.1_rm.out452  CTCGGAACAAACAATGTAGTGGTCATTCGAA-----------GAGAAGTA
GCA_000001735.2_TAIR10.1_rm.out463  -----------------------CCTTTAAG-----------AAGAAGTC
GCA_000001735.2_TAIR10.1_rm.out464  CTCGGGACAGACAGTGTGGTGGTCCTTCGGG-----------AAGAAGTC
GCA_000001735.2_TAIR10.1_rm.out466  TTCGAAACAGACAGTGTGGTGGTCTTTC-----------GGAGAAAAGTC
GCA_000001735.2_TAIR10.1_rm.out475  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out476  ----------------------------------------GGGAAAAGTT
GCA_000001735.2_TAIR10.1_rm.out480  TTTAGGACATATAAT------GTGGT---GGTCTTT--CGAAAAAACGTT
GCA_000001735.2_TAIR10.1_rm.out483  CTCGGGACAGACAGTGTGGTGGTCCTTCGAG-----------GAGAAGTC
GCA_000001735.2_TAIR10.1_rm.out488  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out502  CTCGGGACAGATAATGTGGTAACCTTTTGGG-----------AAGAAACT
GCA_000001735.2_TAIR10.1_rm.out505  CTTGGGACATACAGTGTGGTGGGCTTTCAGG-----------AAGATGTT
GCA_000001735.2_TAIR10.1_rm.out518  CTTGAGACACGGATTATGTTGATTTTTT-----------GGG--------
GCA_000001735.2_TAIR10.1_rm.out521  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out524  CTCATGACATATAGTGTGGTGGTCCTTCAGG-----------GAGAAGTC
GCA_000001735.2_TAIR10.1_rm.out525  CTGGGGACAAACAGTGTGGTGGTCCTTCGGA-----------AAGAAGTC
GCA_000001735.2_TAIR10.1_rm.out527  -------------------------------------------AGAAATC
GCA_000001735.2_TAIR10.1_rm.out530  CTCAGATCAAACAATGTGGTTGCTCAAT-----------TCTATT-----
GCA_000001735.2_TAIR10.1_rm.out531  TTTGGGAAAGACATT------ATAGT----GGTCTTT-TAGGCAGAAGTC
GCA_000001735.2_TAIR10.1_rm.out534  CTTGGGACAAACTTT------ATGGT---GGTCTTT--CGGAGAGAAGTC
GCA_000001735.2_TAIR10.1_rm.out537  CTCGGGACAGACAGTGTGGTGGTCCTTCGTG-----------GAGAAGTC
GCA_000001735.2_TAIR10.1_rm.out540  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out541  CTCGGATCATGCAAT------ATGAT---GGCCC----------------
GCA_000001735.2_TAIR10.1_rm.out543  CTTGGATCAGGCAGTGTGGTGGCCCAATTCTATCTGAATCAGGAGAAATC
GCA_000001735.2_TAIR10.1_rm.out545  TTTGGAATAAACACT------GTGGT---AATTTTTC--GGGTTTAAAT-
GCA_000001735.2_TAIR10.1_rm.out547  CTCATGATAAATAGG------ATAGT---AGTTTTTC-TGGGGAAAAGTC
GCA_000001735.2_TAIR10.1_rm.out551  --------------------------------------------GCATTA
GCA_000001735.2_TAIR10.1_rm.out552  --------------------------------------------------

GCA_000001735.2_TAIR10.1_rm.out4    GACTCTGAAGTACTTCAGTG--CGTTT------CTACCGAGGCTGGCCGG
GCA_000001735.2_TAIR10.1_rm.out10   TACTCTGTAACACTTTGTTA--CATTT------CTACCGAAACTGTTCCG
GCA_000001735.2_TAIR10.1_rm.out24   TACTCTGAAAGAA-TTCGTG--CGTTT------CTATCAAAACTGACCAT
GCA_000001735.2_TAIR10.1_rm.out26   --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out28   CACTCTGTACCACCTTGATG--CATTT------TTACTGATACTGATCAG
GCA_000001735.2_TAIR10.1_rm.out38   CACTCTGAAGCATTTCAGTG--CATTTCTA---T---AAGGACAAACCGG
GCA_000001735.2_TAIR10.1_rm.out47   AACCCTGTAGTATCTCGATGTGAATTC------CTACCGAGGTTGACCAG
GCA_000001735.2_TAIR10.1_rm.out54   --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out66   CACTCTAAAATACTTTGGTA--CATTT------CTACTGAAACTCACTAG
GCA_000001735.2_TAIR10.1_rm.out69   CGTCTCAAAACACTAAAGTA--CGTTT------CTATCAAAG--------
GCA_000001735.2_TAIR10.1_rm.out79   --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out90   TACTCCGTAGCACTTCGATG--TGTTC------TTACTGAGACTGGTCAC
GCA_000001735.2_TAIR10.1_rm.out93   TACTCTGAAGTACTTCGGTG--CGTTT------CTACCGAGGCTGACCGG
GCA_000001735.2_TAIR10.1_rm.out100  CACTCTGAAATACTTCGGTC--TGTTT------CTACCGAAACTTACCGG
GCA_000001735.2_TAIR10.1_rm.out102  -ATTTTTAAGTATTTTGGTG--TGTTT------TCACCGAGAGTTACCGG
GCA_000001735.2_TAIR10.1_rm.out106  CACTTTGAAGTACTTTGGTG--CGTTT------CTACCGGGGCTAACCGG
GCA_000001735.2_TAIR10.1_rm.out107  ACTTTAAAGTAGTTTTAGTA--CATTT------CTATTGAAATTAATCAA
GCA_000001735.2_TAIR10.1_rm.out112  AACTCTAAAACATTTTGATG--CGTTT------CTTCTAAAACTAACCGA
GCA_000001735.2_TAIR10.1_rm.out121  CATTCTGTAGTATTTCGTTG--CGTTC------CTACTGAAACTGATAAA
GCA_000001735.2_TAIR10.1_rm.out125  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out132  CACTCTGTATCACTTCGGTG--CGTTC------CTACCAAAGCTAACCGG
GCA_000001735.2_TAIR10.1_rm.out133  CACTCGAAAACATTTCGGTG--TGTTT------TTACTAGGGCTAACCAG
GCA_000001735.2_TAIR10.1_rm.out138  TACTCTGAAACACTTTAATG--CGTTT------TTATACCGGATCAGTCG
GCA_000001735.2_TAIR10.1_rm.out141  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out145  -----ATCAACTCTTTGGTG--CGTTT------CTACTAAAGCTGAGCTG
GCA_000001735.2_TAIR10.1_rm.out146  GACTTTAAAACATTTTGATG--CATTT------TTACCAAAACTAATCGG
GCA_000001735.2_TAIR10.1_rm.out160  CATTCTATACCATTTCAGTG--TTCTA------CCGGA------------
GCA_000001735.2_TAIR10.1_rm.out163  CACTCTGAAGTATTTCGGTG--CGTTT------CTACCGAAAATAACCGG
GCA_000001735.2_TAIR10.1_rm.out178  CACTCTGTTTTATAGAA------------------------ATTGACCGG
GCA_000001735.2_TAIR10.1_rm.out185  CACTCTAAAATATTTCGGTG--CGTTT------CTGCCGAGGCTGACCAG
GCA_000001735.2_TAIR10.1_rm.out194  TACTTTGTAATATTTTGATG--TGTTC------ATACCGGAGTTCACCAA
GCA_000001735.2_TAIR10.1_rm.out197  TATTTTGTAATACTTAAATA--TATTT------TTACCAAAATTAACCGG
GCA_000001735.2_TAIR10.1_rm.out211  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out212  CACTCTGTACTATTTCGGTG--CGTTC------TTACTAAAACTAATCGG
GCA_000001735.2_TAIR10.1_rm.out219  TACTCTGAAGCACTTCAGTG--TGTTT------CTACCAAAACTAACCGA
GCA_000001735.2_TAIR10.1_rm.out230  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out233  CACTCTGAAGTATTTCGGTG--CATTT------CTACTGAGGCTGACCGG
GCA_000001735.2_TAIR10.1_rm.out235  CACTTTGTAATATTTTAATA--CCTTC------CTAACCAAACTAACCAG
GCA_000001735.2_TAIR10.1_rm.out236  CACTTTGTAATATTTTAATA--CCTTC------CTAACCAAACTAACAAG
GCA_000001735.2_TAIR10.1_rm.out242  CACTGTAAAACATTTTGATA--CGTTT------CTACTAAAACTAACCAG
GCA_000001735.2_TAIR10.1_rm.out243  TATTTTGAAATATTTCGGTA--TATTT------CTATCAAAGCTCA-CTG
GCA_000001735.2_TAIR10.1_rm.out248  TATTCTGAAATATTTTAGTG--CTTTT------CTATCGAAATTGACCGG
GCA_000001735.2_TAIR10.1_rm.out249  TACTTTAAAGCACT-----T--CTTTT------TTATCTGTGTTAATCGG
GCA_000001735.2_TAIR10.1_rm.out254  CACTCCAAAACATTTTGGTA--CGTTT------CCATCCGGACTAACCGG
GCA_000001735.2_TAIR10.1_rm.out258  CACTCTGTAGCACCTTGGTG--CGTTC------CTACCAAAACTGACCGG
GCA_000001735.2_TAIR10.1_rm.out262  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out268  CACTCTGTAGTACTTCGGTG--CGTTT------CTACCGAAGCTGACCAG
GCA_000001735.2_TAIR10.1_rm.out269  CACTCTGTAGTACTTCGGTG--CGTTT------CTACCGAAGCTGACCAG
GCA_000001735.2_TAIR10.1_rm.out270  CACTATTAAGCATATTGGTG--CATTT------CTACCTGACCGGAT---
GCA_000001735.2_TAIR10.1_rm.out272  TACTCTATAACACTTCGGTG--CATTC------CTAACAAAGCTAACCAA
GCA_000001735.2_TAIR10.1_rm.out275  CACTATGAAACACTTCAGTG--CGTTT------CTACCGGGGTTGACCGG
GCA_000001735.2_TAIR10.1_rm.out277  GATTATATAACATATCGACA--TATTC------CTACTTAAACTAACCAA
GCA_000001735.2_TAIR10.1_rm.out280  CACTTTATAGCGCCTCGGTG--CGTTC------CTACCGAGGCTTACCGG
GCA_000001735.2_TAIR10.1_rm.out284  CACTTTAAAGTATTTTGGTG--CGTTT------CTACCGAAATTGACTGG
GCA_000001735.2_TAIR10.1_rm.out285  CACTCTAAAACACTTTGGTG--CGTTT------TTACTGAGGTTAAACAG
GCA_000001735.2_TAIR10.1_rm.out287  CAATCTGAAGCACTTTGGTG--CGTTT------ATACCGGAACTTGCCGG
GCA_000001735.2_TAIR10.1_rm.out291  CACTCTAAAGTACTTCGGTG--CGTTT------CTACCGAAACTGACCGG
GCA_000001735.2_TAIR10.1_rm.out293  CACTCTGAAGTACTTCGGTG--CGTTT------CTACCGGGGTTGACCGG
GCA_000001735.2_TAIR10.1_rm.out295  CATTCCGTAACATTTCGATG--CGTTT------CTACCGAAACTAACCGG
GCA_000001735.2_TAIR10.1_rm.out317  CACGCTAAAGTATTTTAGTA--CATTTCTA---CCAGATTACCCGGAT--
GCA_000001735.2_TAIR10.1_rm.out326  CACTCTAAAGTATTTCAGTG--CATTT------CTACCGGGACTGACCGG
GCA_000001735.2_TAIR10.1_rm.out340  ATTTCTGAAGCACTTTGATG--CGTTT------CTACTTTCTATCGAGAC
GCA_000001735.2_TAIR10.1_rm.out342  CACTCTATATCACTTTGGTG--CATTT------CTACTAAGGCTGACTGG
GCA_000001735.2_TAIR10.1_rm.out353  CAGTCTGAAGCACTTCGTTA--AGTTT------TTACTACGGCTGACCGG
GCA_000001735.2_TAIR10.1_rm.out354  CACT----------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out355  CACTCTAAAGTATTTCGGTG--CTTTT------TACCGGG-ACTAACCGA
GCA_000001735.2_TAIR10.1_rm.out358  CACTCTAAAACATTTCAGTG--AGGTT------TTACCGGGACTGATCGG
GCA_000001735.2_TAIR10.1_rm.out367  C-------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out369  GACTCTAAAGTACTTTGGCG------------------------------
GCA_000001735.2_TAIR10.1_rm.out381  CAATCTGAAACATTTTGGGC--CGTTT------CTAGAAGAACTGATTGG
GCA_000001735.2_TAIR10.1_rm.out390  CACTCTGAAGTATTTTAGTG--CGTGT------TTACCGGGACTGAGCGG
GCA_000001735.2_TAIR10.1_rm.out394  CAGTCTGTAGTATTTCGGTG--TGTTC------CTATCGAGACTGACCGG
GCA_000001735.2_TAIR10.1_rm.out395  CACTCTGAAGTATTTCAGTA--CGTTT------CTACCGAAGCTGACCGG
GCA_000001735.2_TAIR10.1_rm.out400  CACTCTGTAAAACATCGGGG--CATTCTTC---CTATCGAAGCCGACCGG
GCA_000001735.2_TAIR10.1_rm.out403  CACTCTTTAGCACTTCGGTG--CGTTC------CTACCGAGGTCGGCCGA
GCA_000001735.2_TAIR10.1_rm.out405  CACTTTATAACTCTTTGGTGT-GTTTC------CTACCGAATCTGACTAG
GCA_000001735.2_TAIR10.1_rm.out408  ---------------GTAAG--TGTTT------CTACCGGAGCTGACCAG
GCA_000001735.2_TAIR10.1_rm.out410  CATTCTATAATATTTCGGTG--TATTT------TTATCGAGTCTAACCGA
GCA_000001735.2_TAIR10.1_rm.out413  -ATTCTTAAGCATTTTGATG--CGTTT------TTATCGGAGGTGACCAG
GCA_000001735.2_TAIR10.1_rm.out417  CACTTTGTAGCATATTGGTG--CGTTT------TTACTAAAACTGACCGG
GCA_000001735.2_TAIR10.1_rm.out422  CACAATGAAGTATTTCGGTG--TATT------------------------
GCA_000001735.2_TAIR10.1_rm.out424  CATTCTGAAACACTTCGGTG--CCTTT------TACCAAAACTGA--CCG
GCA_000001735.2_TAIR10.1_rm.out437  AATTCTATAATACTTCAATA--ACTTT------TTAGTAAAACTAACTGG
GCA_000001735.2_TAIR10.1_rm.out446  TACTTCGGAGCACTTTGGTG--CGTTT------CTATCGAAGCTGACCAG
GCA_000001735.2_TAIR10.1_rm.out448  CATTCTGAAGTATTTCGGTG--CATTT------CTACCGGTGCTGACCAG
GCA_000001735.2_TAIR10.1_rm.out452  TACTCTAAAATACTTCGGTG--TATTT------CTACTGAAGTTGACTAG
GCA_000001735.2_TAIR10.1_rm.out463  CACTATAAAGTATATCGGTA--TGTTT------CTATCGAGATTTACCGA
GCA_000001735.2_TAIR10.1_rm.out464  TACTCTGAAGTACTTCGGTG--CGTTT------CTACCGGAGCTGACCGG
GCA_000001735.2_TAIR10.1_rm.out466  CACTCTGAAGCATAGCAGTG--CATTT------CTACCGGGATTGACTAG
GCA_000001735.2_TAIR10.1_rm.out475  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out476  TACTTTATAATACTTCGGTT--TATTT------CTACCGAAACTGATCAA
GCA_000001735.2_TAIR10.1_rm.out480  CTCTCTGAACTATTTCAGTG--TGCTT------TTATTGAAACTCACCGG
GCA_000001735.2_TAIR10.1_rm.out483  CACACTAAA-----------------------------------------
GCA_000001735.2_TAIR10.1_rm.out488  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out502  CACCTTAAAACATTTTGATG--TGTTTCTACCAATATCAGGGCTGACCAA
GCA_000001735.2_TAIR10.1_rm.out505  TACTGTGAAGCACTTCGGTG--CGTCT------CTATCGAAGTTTACCGG
GCA_000001735.2_TAIR10.1_rm.out518  GAGACTGAATCATTTTAATA--CATTT------TTATCAGAGTTGATCAG
GCA_000001735.2_TAIR10.1_rm.out521  ------------------TG--TGTTT------ATACCGAAGCTAACCGG
GCA_000001735.2_TAIR10.1_rm.out524  CACTCTAAAACACTGCGATA--CTTTT------TTACCAAAACTGACCGT
GCA_000001735.2_TAIR10.1_rm.out525  CTATCTGAAGTACTTCGGTG--CGTTT------TCTACCGAAACTAACCG
GCA_000001735.2_TAIR10.1_rm.out527  CACCCCAAAACACTTGGATG--CGATT------CTATCGGAAAAGATCGG
GCA_000001735.2_TAIR10.1_rm.out530  -----TGGATCAA--AAGTA--ATCTA------CTTTGTAAGCTGATCGG
GCA_000001735.2_TAIR10.1_rm.out531  TACT----------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out534  TACTATAAAACAGGTGCAAT--TCT----------------ACCGACCAG
GCA_000001735.2_TAIR10.1_rm.out537  CACTCTAAAGTACTTCGGTG--CGTTT------CTACCGAGGCTGACC--
GCA_000001735.2_TAIR10.1_rm.out540  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out541  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out543  CACTCTGTAACACTTCAGTG--CGTTC------CTACCAAAACTAACCGG
GCA_000001735.2_TAIR10.1_rm.out545  CCACTCTAAACACTTACGTG--TATTT------TTACCTGGGCTAACCGA
GCA_000001735.2_TAIR10.1_rm.out547  TAATCTAAAACATTTTGGTG--TATTT------CTATCAGAGTTCATCGA
GCA_000001735.2_TAIR10.1_rm.out551  ATCTCTGTAGCACCTCGGTG--CATTT------CTACCGATACTAACCAG
GCA_000001735.2_TAIR10.1_rm.out552  --------------------------------------------------

GCA_000001735.2_TAIR10.1_rm.out4    ATCAGCCGATAGGGTTTATC-
GCA_000001735.2_TAIR10.1_rm.out10   ATCAGTCCATAAAATTTATC-
GCA_000001735.2_TAIR10.1_rm.out24   ATCAGCCGATAG---------
GCA_000001735.2_TAIR10.1_rm.out26   ---------------------
GCA_000001735.2_TAIR10.1_rm.out28   ATCAACCGATA----------
GCA_000001735.2_TAIR10.1_rm.out38   ATAAGCTG-------------
GCA_000001735.2_TAIR10.1_rm.out47   ATCAGCCAGTAGAATTTATC-
GCA_000001735.2_TAIR10.1_rm.out54   ---------------------
GCA_000001735.2_TAIR10.1_rm.out66   ATAAATCTATAAGTTTAT---
GCA_000001735.2_TAIR10.1_rm.out69   ---------------------
GCA_000001735.2_TAIR10.1_rm.out79   ---------------------
GCA_000001735.2_TAIR10.1_rm.out90   ATTAGCTGATAGGGTATATC-
GCA_000001735.2_TAIR10.1_rm.out93   ATTAGTCGATAGGATTTATC-
GCA_000001735.2_TAIR10.1_rm.out100  ATCAGCCGATAGTATTTATC-
GCA_000001735.2_TAIR10.1_rm.out102  TTTAACCGATAGAATTTATC-
GCA_000001735.2_TAIR10.1_rm.out106  ATCAGCCGATAGGGTTTATC-
GCA_000001735.2_TAIR10.1_rm.out107  ATCAGCCAAT-----------
GCA_000001735.2_TAIR10.1_rm.out112  ATCAGCCGATAAAATTTAT--
GCA_000001735.2_TAIR10.1_rm.out121  ATAAGTCGATAGAGTATAT--
GCA_000001735.2_TAIR10.1_rm.out125  ---------------------
GCA_000001735.2_TAIR10.1_rm.out132  ATCAGCCGATAGGGTATATC-
GCA_000001735.2_TAIR10.1_rm.out133  ATCAGCCGATAAGGTTTAT--
GCA_000001735.2_TAIR10.1_rm.out138  ATGAGATTTAT----------
GCA_000001735.2_TAIR10.1_rm.out141  ---------------------
GCA_000001735.2_TAIR10.1_rm.out145  ATCAGCTAATAGAGTTTATC-
GCA_000001735.2_TAIR10.1_rm.out146  ATGAACTGATA----------
GCA_000001735.2_TAIR10.1_rm.out160  ---------------------
GCA_000001735.2_TAIR10.1_rm.out163  ATCAGCCGATAGAGTTTAT--
GCA_000001735.2_TAIR10.1_rm.out178  ATCAATCGATAAAATTTAT--
GCA_000001735.2_TAIR10.1_rm.out185  ATTAGCCGGTAGGGTTTATC-
GCA_000001735.2_TAIR10.1_rm.out194  ATCAGTAGATATGATTTAT--
GCA_000001735.2_TAIR10.1_rm.out197  ATCATTGGATAAAGTTTAT--
GCA_000001735.2_TAIR10.1_rm.out211  ---------------------
GCA_000001735.2_TAIR10.1_rm.out212  ATCACCTGATAGG--------
GCA_000001735.2_TAIR10.1_rm.out219  ATCAACCGATAAGATTTAT--
GCA_000001735.2_TAIR10.1_rm.out230  ---------------------
GCA_000001735.2_TAIR10.1_rm.out233  ATCAGCCGATAAAGTTTAT--
GCA_000001735.2_TAIR10.1_rm.out235  ATCAACTAATATAATTTAT--
GCA_000001735.2_TAIR10.1_rm.out236  ATCAACTAATATAATTTAT--
GCA_000001735.2_TAIR10.1_rm.out242  ATTAATCGATAAAATTTAT--
GCA_000001735.2_TAIR10.1_rm.out243  GACAGCCGATAAGATTTATC-
GCA_000001735.2_TAIR10.1_rm.out248  ATTAACCGATATGGTTTACC-
GCA_000001735.2_TAIR10.1_rm.out249  ACCAGCTAATAAGATT-----
GCA_000001735.2_TAIR10.1_rm.out254  ATCAACCGATAGAGTTTATC-
GCA_000001735.2_TAIR10.1_rm.out258  ATCAGCCGATAGGAT------
GCA_000001735.2_TAIR10.1_rm.out262  ---------------------
GCA_000001735.2_TAIR10.1_rm.out268  ATTAGCCAATAGGGTATATC-
GCA_000001735.2_TAIR10.1_rm.out269  ATTAGCCAATAGGGTATATC-
GCA_000001735.2_TAIR10.1_rm.out270  --CAGCCGATAGGATTTAT--
GCA_000001735.2_TAIR10.1_rm.out272  ATCAGCCGATAGGGTACATC-
GCA_000001735.2_TAIR10.1_rm.out275  ATCAGCCGATAGAGTTTAT--
GCA_000001735.2_TAIR10.1_rm.out277  ATCAATTAATAAAATATAT--
GCA_000001735.2_TAIR10.1_rm.out280  ATCAGCCGATAAAGTATATC-
GCA_000001735.2_TAIR10.1_rm.out284  ATCAGCGGATAGGGTTTATC-
GCA_000001735.2_TAIR10.1_rm.out285  ATCAGTCTATAGAATTTATC-
GCA_000001735.2_TAIR10.1_rm.out287  ATTAACCGATATGGTTTATC-
GCA_000001735.2_TAIR10.1_rm.out291  ATCAGTCGATAATGTTTATC-
GCA_000001735.2_TAIR10.1_rm.out293  ATTAGCCGATAGGGTTTATC-
GCA_000001735.2_TAIR10.1_rm.out295  ATTAGCCGATATGATATAT--
GCA_000001735.2_TAIR10.1_rm.out317  ---------------------
GCA_000001735.2_TAIR10.1_rm.out326  ATCAGCCGATAGAGTTT----
GCA_000001735.2_TAIR10.1_rm.out340  ---TAACTGTAGGGTTTAT--
GCA_000001735.2_TAIR10.1_rm.out342  ATATGTCGATATGATTT----
GCA_000001735.2_TAIR10.1_rm.out353  ATCTATGATCGGGTTTAT---
GCA_000001735.2_TAIR10.1_rm.out354  ---------------------
GCA_000001735.2_TAIR10.1_rm.out355  ATCAGCCGAAAGAGTTTATC-
GCA_000001735.2_TAIR10.1_rm.out358  ATATGCCGATAGAGTTTAT--
GCA_000001735.2_TAIR10.1_rm.out367  ---------------------
GCA_000001735.2_TAIR10.1_rm.out369  ---------------------
GCA_000001735.2_TAIR10.1_rm.out381  ATCAGCTGATAGAATTT----
GCA_000001735.2_TAIR10.1_rm.out390  ATCAGCCGATAGAGTTTATC-
GCA_000001735.2_TAIR10.1_rm.out394  ATCAGCCGATAGGGTATTATC
GCA_000001735.2_TAIR10.1_rm.out395  ATCAGCCGATAGGG-------
GCA_000001735.2_TAIR10.1_rm.out400  ATCAGCAAATAAGATATAT--
GCA_000001735.2_TAIR10.1_rm.out403  ATCAGCCGATAGGGTCTAT--
GCA_000001735.2_TAIR10.1_rm.out405  ATCAGCCGACATGATTTAT--
GCA_000001735.2_TAIR10.1_rm.out408  ATCCTTTAATTGGGTTT----
GCA_000001735.2_TAIR10.1_rm.out410  ATCAGCCGATAGGAT------
GCA_000001735.2_TAIR10.1_rm.out413  ACCAACCAATAAAGTTTATC-
GCA_000001735.2_TAIR10.1_rm.out417  ATCAGCCGATAGAGT------
GCA_000001735.2_TAIR10.1_rm.out422  ---------------------
GCA_000001735.2_TAIR10.1_rm.out424  ATCAACCGATAGGGTTCAT--
GCA_000001735.2_TAIR10.1_rm.out437  ATCAACTGAT-----------
GCA_000001735.2_TAIR10.1_rm.out446  ATCAGCAAATAGAGTTTATC-
GCA_000001735.2_TAIR10.1_rm.out448  ATCAGCCGATAGGGTTTATC-
GCA_000001735.2_TAIR10.1_rm.out452  GTCAGTCGAT-----------
GCA_000001735.2_TAIR10.1_rm.out463  ATCAATCGACAAAATTTAT--
GCA_000001735.2_TAIR10.1_rm.out464  ATCAGCCGATAGGGTTTATC-
GCA_000001735.2_TAIR10.1_rm.out466  GGTT------------TATC-
GCA_000001735.2_TAIR10.1_rm.out475  ---------------------
GCA_000001735.2_TAIR10.1_rm.out476  ATCAGCCGA------------
GCA_000001735.2_TAIR10.1_rm.out480  ATCAGTCGATAGAATT-----
GCA_000001735.2_TAIR10.1_rm.out483  ---------------------
GCA_000001735.2_TAIR10.1_rm.out488  ---------------------
GCA_000001735.2_TAIR10.1_rm.out502  ATCAGCCGATAAAATTTATC-
GCA_000001735.2_TAIR10.1_rm.out505  ATCAACCGATAGTTTTTAT--
GCA_000001735.2_TAIR10.1_rm.out518  ATCAGTCAATATCGTTTAT--
GCA_000001735.2_TAIR10.1_rm.out521  ATCAACCGATAGGG-------
GCA_000001735.2_TAIR10.1_rm.out524  ATCAGATGATAGGTTTTATC-
GCA_000001735.2_TAIR10.1_rm.out525  GA-------------------
GCA_000001735.2_TAIR10.1_rm.out527  ATCAACTGATAAG--------
GCA_000001735.2_TAIR10.1_rm.out530  ATCAACCGATAAGAT------
GCA_000001735.2_TAIR10.1_rm.out531  ---------------------
GCA_000001735.2_TAIR10.1_rm.out534  ATCAGCTGATAGGGTTTATC-
GCA_000001735.2_TAIR10.1_rm.out537  ---------------------
GCA_000001735.2_TAIR10.1_rm.out540  ---------------------
GCA_000001735.2_TAIR10.1_rm.out541  ---------------------
GCA_000001735.2_TAIR10.1_rm.out543  ATCAACTAATAGGATATAT--
GCA_000001735.2_TAIR10.1_rm.out545  TCGGC----------------
GCA_000001735.2_TAIR10.1_rm.out547  ATCAACTGATATAATTTATC-
GCA_000001735.2_TAIR10.1_rm.out551  ATTAGCCGATAGGATATAT--
GCA_000001735.2_TAIR10.1_rm.out552  ---------------------
//
