# STOCKHOLM 1.0

#=GS                  GCA_000001735.2_TAIR10.1_rm.out0 DE    SINE
#=GS                  GCA_000001735.2_TAIR10.1_rm.out7 DE    SINE
#=GS                 GCA_000001735.2_TAIR10.1_rm.out11 DE    SINE
#=GS                 GCA_000001735.2_TAIR10.1_rm.out12 DE    SINE
#=GS                 GCA_000001735.2_TAIR10.1_rm.out16 DE    SINE
#=GS                 GCA_000001735.2_TAIR10.1_rm.out18 DE    SINE
#=GS                 GCA_000001735.2_TAIR10.1_rm.out19 DE    SINE
#=GS                 GCA_000001735.2_TAIR10.1_rm.out25 DE    SINE
#=GS                 GCA_000001735.2_TAIR10.1_rm.out33 DE    SINE
#=GS                 GCA_000001735.2_TAIR10.1_rm.out34 DE    SINE
#=GS                 GCA_000001735.2_TAIR10.1_rm.out35 DE    SINE
#=GS                 GCA_000001735.2_TAIR10.1_rm.out36 DE    SINE
#=GS                 GCA_000001735.2_TAIR10.1_rm.out55 DE    SINE
#=GS                 GCA_000001735.2_TAIR10.1_rm.out56 DE    SINE
#=GS                 GCA_000001735.2_TAIR10.1_rm.out61 DE    SINE
#=GS                 GCA_000001735.2_TAIR10.1_rm.out65 DE    SINE
#=GS                 GCA_000001735.2_TAIR10.1_rm.out68 DE    SINE
#=GS                 GCA_000001735.2_TAIR10.1_rm.out70 DE    SINE
#=GS                 GCA_000001735.2_TAIR10.1_rm.out73 DE    SINE
#=GS                 GCA_000001735.2_TAIR10.1_rm.out77 DE    SINE
#=GS                 GCA_000001735.2_TAIR10.1_rm.out81 DE    SINE
#=GS                 GCA_000001735.2_TAIR10.1_rm.out85 DE    SINE
#=GS                 GCA_000001735.2_TAIR10.1_rm.out91 DE    SINE
#=GS                 GCA_000001735.2_TAIR10.1_rm.out98 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out103 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out110 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out116 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out119 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out126 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out137 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out143 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out149 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out155 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out158 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out175 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out177 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out179 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out181 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out187 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out216 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out218 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out223 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out225 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out228 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out229 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out231 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out247 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out257 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out261 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out263 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out264 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out265 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out266 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out281 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out283 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out286 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out288 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out310 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out313 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out315 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out319 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out322 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out327 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out332 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out341 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out344 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out363 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out364 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out365 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out376 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out377 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out383 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out385 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out387 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out388 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out392 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out411 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out412 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out414 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out421 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out430 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out431 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out435 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out438 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out440 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out444 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out447 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out450 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out451 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out453 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out455 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out456 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out457 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out460 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out465 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out467 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out468 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out470 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out474 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out478 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out481 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out494 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out496 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out500 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out515 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out516 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out526 DE    SINE
#=GS                GCA_000001735.2_TAIR10.1_rm.out536 DE    SINE
#=GS                    GCA_000004255.1_v.1.0_rm.out84 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out117 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out118 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out172 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out184 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out199 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out224 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out233 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out234 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out240 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out248 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out259 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out260 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out275 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out314 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out320 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out334 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out343 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out359 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out362 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out363 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out368 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out379 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out392 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out402 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out408 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out415 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out424 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out434 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out437 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out450 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out459 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out463 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out469 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out525 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out543 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out552 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out588 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out599 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out613 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out622 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out629 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out630 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out651 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out652 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out653 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out662 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out678 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out687 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out693 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out698 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out708 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out712 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out713 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out729 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out740 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out760 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out770 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out774 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out791 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out792 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out827 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out837 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out843 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out849 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out852 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out871 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out888 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out894 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out895 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out906 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out959 DE    SINE
#=GS                   GCA_000004255.1_v.1.0_rm.out997 DE    SINE
#=GS                  GCA_000004255.1_v.1.0_rm.out1002 DE    SINE
#=GS                  GCA_000004255.1_v.1.0_rm.out1005 DE    SINE
#=GS                  GCA_000004255.1_v.1.0_rm.out1006 DE    SINE
#=GS                  GCA_000004255.1_v.1.0_rm.out1009 DE    SINE
#=GS                  GCA_000004255.1_v.1.0_rm.out1033 DE    SINE
#=GS                  GCA_000004255.1_v.1.0_rm.out1045 DE    SINE
#=GS                  GCA_000004255.1_v.1.0_rm.out1072 DE    SINE
#=GS                  GCA_000004255.1_v.1.0_rm.out1126 DE    SINE
#=GS                  GCA_000004255.1_v.1.0_rm.out1132 DE    SINE
#=GS                  GCA_000004255.1_v.1.0_rm.out1147 DE    SINE
#=GS                  GCA_000004255.1_v.1.0_rm.out1187 DE    SINE
#=GS                  GCA_000004255.1_v.1.0_rm.out1200 DE    SINE
#=GS                  GCA_000004255.1_v.1.0_rm.out1215 DE    SINE
#=GS                  GCA_000004255.1_v.1.0_rm.out1219 DE    SINE
#=GS                  GCA_000004255.1_v.1.0_rm.out1251 DE    SINE
#=GS                  GCA_000004255.1_v.1.0_rm.out1254 DE    SINE
#=GS                  GCA_000004255.1_v.1.0_rm.out1276 DE    SINE
#=GS                  GCA_000004255.1_v.1.0_rm.out1287 DE    SINE
#=GS                  GCA_000004255.1_v.1.0_rm.out1300 DE    SINE
#=GS                  GCA_000004255.1_v.1.0_rm.out1305 DE    SINE
#=GS                  GCA_000004255.1_v.1.0_rm.out1314 DE    SINE
#=GS                  GCA_000004255.1_v.1.0_rm.out1323 DE    SINE
#=GS                 GCA_000523005.1_Ahal_1.0_rm.out13 DE    SINE
#=GS                 GCA_000523005.1_Ahal_1.0_rm.out19 DE    SINE
#=GS                 GCA_000523005.1_Ahal_1.0_rm.out20 DE    SINE
#=GS                 GCA_000523005.1_Ahal_1.0_rm.out28 DE    SINE
#=GS                 GCA_000523005.1_Ahal_1.0_rm.out41 DE    SINE
#=GS                 GCA_000523005.1_Ahal_1.0_rm.out48 DE    SINE
#=GS                 GCA_000523005.1_Ahal_1.0_rm.out79 DE    SINE
#=GS                 GCA_000523005.1_Ahal_1.0_rm.out80 DE    SINE
#=GS                 GCA_000523005.1_Ahal_1.0_rm.out94 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out104 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out105 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out114 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out117 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out121 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out157 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out159 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out160 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out176 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out182 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out188 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out192 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out194 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out198 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out201 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out203 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out210 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out211 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out217 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out223 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out236 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out251 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out252 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out259 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out267 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out282 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out284 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out291 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out305 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out323 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out332 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out335 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out339 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out344 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out349 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out365 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out373 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out379 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out399 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out413 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out451 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out452 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out459 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out460 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out491 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out504 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out510 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out511 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out520 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out521 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out524 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out542 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out543 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out550 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out551 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out561 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out565 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out566 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out577 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out584 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out588 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out589 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out591 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out595 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out600 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out601 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out604 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out613 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out617 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out618 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out621 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out622 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out631 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out632 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out633 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out652 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out668 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out672 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out685 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out695 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out716 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out726 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out729 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out736 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out750 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out758 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out775 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out776 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out777 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out780 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out825 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out832 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out849 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out852 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out855 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out865 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out868 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out877 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out886 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out897 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out902 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out908 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out909 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out937 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out949 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out954 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out956 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out959 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out964 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out965 DE    SINE
#=GS                GCA_000523005.1_Ahal_1.0_rm.out987 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1037 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1040 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1047 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1059 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1075 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1084 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1085 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1096 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1100 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1101 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1132 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1150 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1195 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1196 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1198 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1199 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1200 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1210 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1212 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1231 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1239 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1240 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1254 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1260 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1289 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1294 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1302 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1316 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1317 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1318 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1319 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1321 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1341 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1348 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1349 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1370 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1371 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1378 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1404 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1409 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1417 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1419 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1420 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1437 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1442 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1448 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1451 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1457 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1470 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1472 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1478 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1481 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1516 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1582 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1595 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1660 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1673 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1677 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1686 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1713 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1853 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1854 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1860 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1868 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1869 DE    SINE
#=GS               GCA_000523005.1_Ahal_1.0_rm.out1887 DE    SINE
#=GS    GCA_902850255.1_pseudohap_a_tetraploid_rm.out3 DE    SINE
#=GS   GCA_902850255.1_pseudohap_a_tetraploid_rm.out11 DE    SINE
#=GS   GCA_902850255.1_pseudohap_a_tetraploid_rm.out20 DE    SINE
#=GS   GCA_902850255.1_pseudohap_a_tetraploid_rm.out23 DE    SINE
#=GS   GCA_902850255.1_pseudohap_a_tetraploid_rm.out28 DE    SINE
#=GS   GCA_902850255.1_pseudohap_a_tetraploid_rm.out29 DE    SINE
#=GS   GCA_902850255.1_pseudohap_a_tetraploid_rm.out44 DE    SINE
#=GS   GCA_902850255.1_pseudohap_a_tetraploid_rm.out57 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out102 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out104 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out115 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out117 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out143 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out183 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out227 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out231 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out232 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out254 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out280 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out283 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out299 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out317 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out343 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out352 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out353 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out361 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out362 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out387 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out414 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out456 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out466 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out469 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out478 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out479 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out494 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out497 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out498 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out512 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out524 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out557 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out562 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out563 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out566 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out582 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out594 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out597 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out602 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out604 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out619 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out655 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out657 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out664 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out666 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out674 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out675 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out683 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out697 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out703 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out709 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out726 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out736 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out742 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out745 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out748 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out765 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out767 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out774 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out778 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out781 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out784 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out807 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out819 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out840 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out843 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out845 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out865 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out886 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out911 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out926 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out933 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out942 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out948 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out950 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out953 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out968 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out970 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out976 DE    SINE
#=GS  GCA_902850255.1_pseudohap_a_tetraploid_rm.out993 DE    SINE
#=GS GCA_902850255.1_pseudohap_a_tetraploid_rm.out1001 DE    SINE
#=GS GCA_902850255.1_pseudohap_a_tetraploid_rm.out1006 DE    SINE
#=GS GCA_902850255.1_pseudohap_a_tetraploid_rm.out1026 DE    SINE
#=GS GCA_902850255.1_pseudohap_a_tetraploid_rm.out1030 DE    SINE
#=GS GCA_902850255.1_pseudohap_a_tetraploid_rm.out1050 DE    SINE
#=GS GCA_902850255.1_pseudohap_a_tetraploid_rm.out1060 DE    SINE
#=GS GCA_902850255.1_pseudohap_a_tetraploid_rm.out1083 DE    SINE
#=GS GCA_902850255.1_pseudohap_a_tetraploid_rm.out1090 DE    SINE
#=GS GCA_902850255.1_pseudohap_a_tetraploid_rm.out1098 DE    SINE
#=GS GCA_902850255.1_pseudohap_a_tetraploid_rm.out1101 DE    SINE
#=GS GCA_902850255.1_pseudohap_a_tetraploid_rm.out1108 DE    SINE
#=GS GCA_902850255.1_pseudohap_a_tetraploid_rm.out1124 DE    SINE
#=GS GCA_902850255.1_pseudohap_a_tetraploid_rm.out1136 DE    SINE
#=GS GCA_902850255.1_pseudohap_a_tetraploid_rm.out1155 DE    SINE
#=GS GCA_902850255.1_pseudohap_a_tetraploid_rm.out1156 DE    SINE
#=GS GCA_902850255.1_pseudohap_a_tetraploid_rm.out1163 DE    SINE
#=GS GCA_902850255.1_pseudohap_a_tetraploid_rm.out1164 DE    SINE
#=GS GCA_902850255.1_pseudohap_a_tetraploid_rm.out1208 DE    SINE

GCA_000001735.2_TAIR10.1_rm.out0                   --CAACGTACTCA--------TGGTCCAATGGTAAAT-CTTT-------C
GCA_000001735.2_TAIR10.1_rm.out7                   --------ACCAACGTGCTGTTGGTCTAATGGT-AAATCTCT-------C
GCA_000001735.2_TAIR10.1_rm.out11                  --------GTTGT--------TGGCCCAGTGGTAAAT-TTTC-------C
GCA_000001735.2_TAIR10.1_rm.out12                  --------ACCAACGAGCTGTTAGCCGAGTGATAAAT-CTTCCAAATGGA
GCA_000001735.2_TAIR10.1_rm.out16                  ------GTGTTGA--------CGGTCTAGTGGTAAAT-CTCC-------C
GCA_000001735.2_TAIR10.1_rm.out18                  -ATCAACGTGGTG--------TTAGCTAGTGGTAAAT-TTTT-------C
GCA_000001735.2_TAIR10.1_rm.out19                  --------ACCAACGTACTGTTGACCTAGTGGTAAAT-CTCCCAGGTGGA
GCA_000001735.2_TAIR10.1_rm.out25                  ----------------------------GTAGTAAAT-CTTT-------C
GCA_000001735.2_TAIR10.1_rm.out33                  ----ACGTGTTGT--------CGGTCCAGTGATAAAT-CTTT-------C
GCA_000001735.2_TAIR10.1_rm.out34                  --------ACCAACATGTTGTTGGCCCACTGGTAAAT-CTTTTAGGTGGA
GCA_000001735.2_TAIR10.1_rm.out35                  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out36                  ------ATCAACGTGCGCTGTTGGCCTAGTAGTAAAT-TTTT-------C
GCA_000001735.2_TAIR10.1_rm.out55                  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out56                  ----------CAAAGTGCTGTTGGCCCAGTGGTAAAT-TTTAAAGGTGGA
GCA_000001735.2_TAIR10.1_rm.out61                  --------ACCAACGTGCTATCGACCTAGTTATAAAT-CTCTCAGGTGGA
GCA_000001735.2_TAIR10.1_rm.out65                  --------ATCAACGAGTTGTTGGTCTAGTGGTAAAT-CTCC-------C
GCA_000001735.2_TAIR10.1_rm.out68                  ATCAATGTGCTGT--------TAGTTCAGTGATAAAT-CTTT-------T
GCA_000001735.2_TAIR10.1_rm.out70                  --------ACCAACGAGCTGTTGGACCAGTGGTAAAATCTCT-------C
GCA_000001735.2_TAIR10.1_rm.out73                  --------ATCAACATTGTGTTGGTATAGTGGTAAAT-TTTT-------T
GCA_000001735.2_TAIR10.1_rm.out77                  ACCAACGTGTTGT--------TGCCCTAGTGGTAAAT-CTCC-------C
GCA_000001735.2_TAIR10.1_rm.out81                  --------ACCAACGTAGGATTGACCAAATGGTAAAT-CTTT-------C
GCA_000001735.2_TAIR10.1_rm.out85                  --------ACCAACGATCTGTTGGCCCAGTAGTAAAT-CTCTTAGGTAGA
GCA_000001735.2_TAIR10.1_rm.out91                  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out98                  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out103                 ------------AACGTAGTGTTGGGCTGCAGTAAAT-TTTT-------T
GCA_000001735.2_TAIR10.1_rm.out110                 ----------------GCTGTTGGTCCAGTGGTAAAT-CTTC-------C
GCA_000001735.2_TAIR10.1_rm.out116                 ACCAACTTTGTGT--------TGGTCCAATGATAAAT-TTTA-------G
GCA_000001735.2_TAIR10.1_rm.out119                 -----------AACTTATTGTTGGTCTAATGATAATG-TTTT-------T
GCA_000001735.2_TAIR10.1_rm.out126                 ACCAACAGCATGTTGGTCCTGTGGTAAATTTTAGGAT-TTTC-------T
GCA_000001735.2_TAIR10.1_rm.out137                 -----------ACCAACGTGATGTTGGTCTAGTGGTA-AATC-------T
GCA_000001735.2_TAIR10.1_rm.out143                 --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out149                 --------ACCAACGGGTTGTTGGCCCAGTAGTAAAT-CTCC-------G
GCA_000001735.2_TAIR10.1_rm.out155                 --------ACCAATGTGGGGTTGACCTAGTGGTAAAT-CTCC-------T
GCA_000001735.2_TAIR10.1_rm.out158                 --------ACCAACGAGCTATTGGCCCAATACTAAAT-CTCC--------
GCA_000001735.2_TAIR10.1_rm.out175                 --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out177                 --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out179                 --------ACTAACGTGTTATTGGCCTAATGGTAAAT-CTCC-------C
GCA_000001735.2_TAIR10.1_rm.out181                 --------ACCAACGTGGTGTTGGCCCAATAAT-AAATCTCT-------T
GCA_000001735.2_TAIR10.1_rm.out187                 ----------------GCTGTTGACCCAGTGGTAAAT-CTCT-------C
GCA_000001735.2_TAIR10.1_rm.out216                 --------------------------------------------AGTGGT
GCA_000001735.2_TAIR10.1_rm.out218                 --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out223                 --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out225                 --------------------------------TAAAT-CTTC-------T
GCA_000001735.2_TAIR10.1_rm.out228                 --------ACCAACGTAGTGCTGGTCCAATGATAAAT-CTTT-------T
GCA_000001735.2_TAIR10.1_rm.out229                 ---------CCAATCCGGTGTTGGCCTAATGGTAAAT-CTCT-------C
GCA_000001735.2_TAIR10.1_rm.out231                 --------------------------------TAAAT-CTCC-------C
GCA_000001735.2_TAIR10.1_rm.out247                 --------ACTAATATGATGTTGATTCAGTGGTAAAT-CTTT-------C
GCA_000001735.2_TAIR10.1_rm.out257                 ---------------------------------AAAT-CTCG-------C
GCA_000001735.2_TAIR10.1_rm.out261                 --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out263                 --------ATCAACAATCTGTTGGTCCAATAGTAAAT-CTCC-------C
GCA_000001735.2_TAIR10.1_rm.out264                 --------ACCAATATGGTGTTGGCTTAGTGGTAAAT-CTCT-------C
GCA_000001735.2_TAIR10.1_rm.out265                 --------ACCAATATGGTATTGGTTCGGTGGTAAAT-CTCT-------T
GCA_000001735.2_TAIR10.1_rm.out266                 ---------ACCAATGTACTGTTGGTCAGTGGTAAAT-TTTT-------T
GCA_000001735.2_TAIR10.1_rm.out281                 ACCGATAAGC--------TATTGGTCCAGTGGTAAAT-CTTT-------T
GCA_000001735.2_TAIR10.1_rm.out283                 --------ACCAACGAGCTATTGGCCTAGTGATAAAT-CTCTCAAGTGGA
GCA_000001735.2_TAIR10.1_rm.out286                 --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out288                 -------------ACGAGCTGTTGCCCAGTGGTAAAT-CTTC-------T
GCA_000001735.2_TAIR10.1_rm.out310                 --------ACCAACGTGGTATTGGCCCAATATTAAAT-CTTC-------C
GCA_000001735.2_TAIR10.1_rm.out313                 ---------ACCAACGTGTTATTGCCCAGTGATAAAT-TTCC-------C
GCA_000001735.2_TAIR10.1_rm.out315                 --------ACCAACAAGCTGTTGGCCGAGTGATAAAT-CTTCCGGGTGGA
GCA_000001735.2_TAIR10.1_rm.out319                 ----------CAACGTGCTGTTGGCCCAGTGGT-AAATCTCC-------T
GCA_000001735.2_TAIR10.1_rm.out322                 --------ACCAACGTGTTGTTGGCCCAGTGGTAAAT-CTCTCAGATAGA
GCA_000001735.2_TAIR10.1_rm.out327                 -------------------------------GT----AAATA-------T
GCA_000001735.2_TAIR10.1_rm.out332                 --------ACCAACGTGCTGTTGGCCTAGTGGTAAAT-TTCCCAGATGTA
GCA_000001735.2_TAIR10.1_rm.out341                 --------ACCAACTTAGAGTTGACCCAATGATAAAT-CTCT-------T
GCA_000001735.2_TAIR10.1_rm.out344                 --------ACCAACGTGGTTTTGGTCTAGTGATAAAT-ATCT-------T
GCA_000001735.2_TAIR10.1_rm.out363                 --------ACCAACGTACTGTTAGCCTAATGATAAAT-CTCC-------C
GCA_000001735.2_TAIR10.1_rm.out364                 ACCAACGTGCTGT--------TGGCCGAGTGGTAAAT-TTTC-------C
GCA_000001735.2_TAIR10.1_rm.out365                 --------ACCAACGTGGTATTGGTCCAGTAGTAAAT-CTTT-------G
GCA_000001735.2_TAIR10.1_rm.out376                 --------ACCAACGAGCTGTTGGTCCAGTGGT-AAATTTCT-------C
GCA_000001735.2_TAIR10.1_rm.out377                 ---------CTAACGTGCGGTTAGTCCAATGGTAAAT-CTCT-------C
GCA_000001735.2_TAIR10.1_rm.out383                 ACCAACGAGCTGT--------TGGCCCAGTGTTAAAT-TTTT-------T
GCA_000001735.2_TAIR10.1_rm.out385                 --------ACCAACGAGCTGTTGGCCCAGTGGTAAAT-TTTCCAAGTAGA
GCA_000001735.2_TAIR10.1_rm.out387                 --CAACGTGGTGG--------TAGTCTAGTAGTAAAT-TTCC-------C
GCA_000001735.2_TAIR10.1_rm.out388                 --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out392                 --------ACTAATGTGGTTTTGGTCTAGTGGTAAAT-CTTC-------C
GCA_000001735.2_TAIR10.1_rm.out411                 --------ACCAACGTGGGGTTAACCTAATGGTAAAT-CTCT-------C
GCA_000001735.2_TAIR10.1_rm.out412                 ------------------------------GGTAAAT-CTCT-------C
GCA_000001735.2_TAIR10.1_rm.out414                 --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out421                 ----------CAACGAGTTATTGGTCCAGTCATAAAT-CTTC-------C
GCA_000001735.2_TAIR10.1_rm.out430                 ---------CACGTTGGAAGGAATCTCTCTA-------------------
GCA_000001735.2_TAIR10.1_rm.out431                 --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out435                 --------ACCAACGAACTATTGACCTAGTGGTAAAT-TTCT-------C
GCA_000001735.2_TAIR10.1_rm.out438                 --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out440                 ---ACCAAAATGCTCTTGGTTTTGGTCAGTAGTAAAT-TTTC-------T
GCA_000001735.2_TAIR10.1_rm.out444                 ---------ACCAACGTGATGTTGGCTAGCAGTAATT-TATT-------T
GCA_000001735.2_TAIR10.1_rm.out447                 ---------ACCGACTTGGTGTTGTCCAATGGTATAT-TTTC-------T
GCA_000001735.2_TAIR10.1_rm.out450                 ---------------------------AGTGGTAAAT-CTCT-------C
GCA_000001735.2_TAIR10.1_rm.out451                 ------------------TGTTGGTCGTGTGGTAAAT-ATGT-------C
GCA_000001735.2_TAIR10.1_rm.out453                 --------ACCAACGAGCTGTTGGCCCAATGGTAAAT-CTCC-------T
GCA_000001735.2_TAIR10.1_rm.out455                 -ATCAATGTGTTG--------TTGACCAGTGGTAAAT-TTTC-------T
GCA_000001735.2_TAIR10.1_rm.out456                 ------------------------CCAAGTGGTAAAT-CTTT-------C
GCA_000001735.2_TAIR10.1_rm.out457                 --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out460                 -------------------GTTGGCCCATTGATAAAT-CTCA-------C
GCA_000001735.2_TAIR10.1_rm.out465                 --------ACTAATGTGATGTTGGTTCAATGGTAAAT-CTCT-------C
GCA_000001735.2_TAIR10.1_rm.out467                 -----------AATGTGGTGTTGTTCCTATGATAAAT-CTCC-------T
GCA_000001735.2_TAIR10.1_rm.out468                 --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out470                 ---------ACTGACGTGGGTTTATCCAGCGGTAA---------------
GCA_000001735.2_TAIR10.1_rm.out474                 ------------------------------------------------CC
GCA_000001735.2_TAIR10.1_rm.out478                 --------ACTAACGTGCTGTTATCGCAATGGTAAAT-CTTC-------T
GCA_000001735.2_TAIR10.1_rm.out481                 --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out494                 --------ACCAACGTGTTGTTGGCTTAGTGGTAAAT-CTCC-------G
GCA_000001735.2_TAIR10.1_rm.out496                 --------ATCAACGTGTTGTTGGCCCAGTGGT-AAATCTCC-------C
GCA_000001735.2_TAIR10.1_rm.out500                 --------ACCAACAAGTTGTTGGTCCAATAATAAAT-TTTT-------T
GCA_000001735.2_TAIR10.1_rm.out515                 --------ACCAAGGTGTTGTTGGCCTAGTGGTAAAT-CTTC--------
GCA_000001735.2_TAIR10.1_rm.out516                 --------ACCAACGTGCTGTTGGCCCAACGGTAAAT-CTCCCCGGTGGA
GCA_000001735.2_TAIR10.1_rm.out526                 --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out536                 -----------GT--------TGGTGTAATGATAAAT-CTTC-------C
GCA_000004255.1_v.1.0_rm.out84                     --------ACCAAAGTTGTGTTGGTCCAGTGGTAAAT-CTCTTAGGTGGA
GCA_000004255.1_v.1.0_rm.out117                    --------ACCAACGTTGTGTTGGCCCAGTGATAAAT-CTC---------
GCA_000004255.1_v.1.0_rm.out118                    --------------------------------------------------
GCA_000004255.1_v.1.0_rm.out172                    --------ACCAACGTTGTGTTGGCCCAGTGGTAAAT-CTCT--------
GCA_000004255.1_v.1.0_rm.out184                    --------ACCAACGTTATGTTGGTCCAGTGGTAAAT-CTCC--------
GCA_000004255.1_v.1.0_rm.out199                    ---------CCAACGTTATGTTGGCCCAGTGGTAAAT-CTCC--------
GCA_000004255.1_v.1.0_rm.out224                    --------------------------------------------------
GCA_000004255.1_v.1.0_rm.out233                    --------------------------------------------------
GCA_000004255.1_v.1.0_rm.out234                    --------ACCAACGTTATGTTGGCCCAGTGGTAAAT-CTCC--------
GCA_000004255.1_v.1.0_rm.out240                    --------ACCAACGTTGTGTTGG----CCCAGTGAT-CTTCCAGTTAGA
GCA_000004255.1_v.1.0_rm.out248                    --------ACCAAAGTTGTGTTGGCCGAGTGGTAAAT-CTCCCAGGTGCA
GCA_000004255.1_v.1.0_rm.out259                    --------ACCAATGTTGTGTTAGCCCAGTGGTAAAT-CTTCCAGGTGGA
GCA_000004255.1_v.1.0_rm.out260                    --------ACCAACGTTGTGTTGGCCCAATGGTAAAT-CTTCTAGGTTGA
GCA_000004255.1_v.1.0_rm.out275                    ------------ACGTTGTGTTGGCCCAGTGATAAAT-CTTCCAGGTGGA
GCA_000004255.1_v.1.0_rm.out314                    --------ATCAACGTTGTGTTGGCCCAGTGGTAAAT-CTCC--------
GCA_000004255.1_v.1.0_rm.out320                    --------ATCAATGTTGTGTTGGTCCAGTGGTAAAT-CTCC--------
GCA_000004255.1_v.1.0_rm.out334                    --------------------------------------------------
GCA_000004255.1_v.1.0_rm.out343                    --------------------------------------------------
GCA_000004255.1_v.1.0_rm.out359                    --------ACCAACGTTGTGTTGCCCCAGTGGTAAAT-CTTTCAGGTAGA
GCA_000004255.1_v.1.0_rm.out362                    --------ATCAACGTTGTGTTGGCCCAGTGGTAAAT-CTTT--------
GCA_000004255.1_v.1.0_rm.out363                    --------ACCAACGTTGTGTTGGTCCAGTGGTAAAT-CTTC--------
GCA_000004255.1_v.1.0_rm.out368                    --------ACTAACGTTGTGTTGGCCCAGTGGTAAAT-CTTCTAGATGGA
GCA_000004255.1_v.1.0_rm.out379                    --------ACCAACATTGTGTTGGCTCAGTAATAAAT-TTTGCAGGTAGA
GCA_000004255.1_v.1.0_rm.out392                    ---------------------GTTGCCAGTGGTAAAT-CTTT-------T
GCA_000004255.1_v.1.0_rm.out402                    ------------------TGTTGTCCCAATGATAAAT-CTTT-------T
GCA_000004255.1_v.1.0_rm.out408                    --------ACCAACGTGGTGTTGTTCCAGTGATAAAT-CTCC-------T
GCA_000004255.1_v.1.0_rm.out415                    --------ACCAACATTGTGTTGGCCCAGTGATAAAT-CTCCCAGGTGGA
GCA_000004255.1_v.1.0_rm.out424                    --------ACCAACGTTGTGTTGGCCCAGTGGTAAAT-CTCC--------
GCA_000004255.1_v.1.0_rm.out434                    --------ACCAACGTTGTGTTGGCCCAGTGGTAAAT-CTCC--------
GCA_000004255.1_v.1.0_rm.out437                    --------------------------------------------------
GCA_000004255.1_v.1.0_rm.out450                    --------ACCAACGTTGTGTTGGTCCAGTGGTAAAT-CTCT--------
GCA_000004255.1_v.1.0_rm.out459                    --------------------------------------------------
GCA_000004255.1_v.1.0_rm.out463                    --------ACCAACGTTGTGTTGGCCCAGTGGTAAAT-CTTCCTGATGGA
GCA_000004255.1_v.1.0_rm.out469                    --------------GTGTTGTTGACCCTGTGGTAAATCTCGC-------A
GCA_000004255.1_v.1.0_rm.out525                    --------ACCAACGTTGTGTTGGCCCAGTGGTAAAT-CTCC--------
GCA_000004255.1_v.1.0_rm.out543                    ------------------TGTTGGTCCAGTGGTAAAT-CTTTCAGGTGGA
GCA_000004255.1_v.1.0_rm.out552                    --------ACCAACGTTGTGTTGGCCTAGTGGT-AAATCTCC-------T
GCA_000004255.1_v.1.0_rm.out588                    --------ACCAACGTTGTGTTGGTCCAGTGGTAAAT-CTCC--------
GCA_000004255.1_v.1.0_rm.out599                    --------------------------------------------------
GCA_000004255.1_v.1.0_rm.out613                    ---------ACTAACGTGGTGTTGTCCAGTGATAAAT-TTCC-------C
GCA_000004255.1_v.1.0_rm.out622                    --------------------------------------------------
GCA_000004255.1_v.1.0_rm.out629                    --------ACCAACGTTGTGTTGGTCTAGTTGTAAAT-TTTT-------C
GCA_000004255.1_v.1.0_rm.out630                    --------ACCAACGTTGTGTTGGTCTAGTTGTACAT-TTTT-------C
GCA_000004255.1_v.1.0_rm.out651                    --------------------------------------------------
GCA_000004255.1_v.1.0_rm.out652                    ----------CAACGTTGTGTTGGCCCAGTGAT-AAATCTTC-------C
GCA_000004255.1_v.1.0_rm.out653                    --------------------------------------------------
GCA_000004255.1_v.1.0_rm.out662                    --------ACCAACGTTGTATTGGCCCAGTGGTAAAT-CTCC--------
GCA_000004255.1_v.1.0_rm.out678                    --------------------------------------------------
GCA_000004255.1_v.1.0_rm.out687                    --------ACCAACGTTATGTTGGTCCAGTGGTAAAT-CTCCTAGGTATA
GCA_000004255.1_v.1.0_rm.out693                    ACCAATGTGGTGT--------TGTCCCAGTGGTAAAT-CTTC-------A
GCA_000004255.1_v.1.0_rm.out698                    --------------------------------------------------
GCA_000004255.1_v.1.0_rm.out708                    --------ACCAATGTTGTGTTGGTCCACTGGTAAAT-CTCC--------
GCA_000004255.1_v.1.0_rm.out712                    --------------------------------------------------
GCA_000004255.1_v.1.0_rm.out713                    ------------------------------------T-TTCC-------C
GCA_000004255.1_v.1.0_rm.out729                    --------------------------------------------------
GCA_000004255.1_v.1.0_rm.out740                    --------ACCGACGTTGTGTTGGCCCAGAGGTAAAT-CTCT--------
GCA_000004255.1_v.1.0_rm.out760                    --------ACCAACGTTGTGTTGGCGCAGTGGTAAAT-CTCTCAGGTAGA
GCA_000004255.1_v.1.0_rm.out770                    --------ACCAACGTGGTGTTGGTCCAGTGGT-AAATCTTC-------T
GCA_000004255.1_v.1.0_rm.out774                    --------ACCAATGTTGTGTTGGCCCAATGGTAAAT-CTCC--------
GCA_000004255.1_v.1.0_rm.out791                    --------------------------------------------------
GCA_000004255.1_v.1.0_rm.out792                    --------ACCAACGTTGTGTTGGCTCAGTGGTAAAT-CTTCCAAGTAAA
GCA_000004255.1_v.1.0_rm.out827                    --------ACCAACGTTGTGTTGGTCCAGTAATAAAT-CTCTCAGGTGGA
GCA_000004255.1_v.1.0_rm.out837                    --------ACCAACGTTGTGTTGGTCCAGTGATAAAT-CTTT--------
GCA_000004255.1_v.1.0_rm.out843                    --------ACTAACGTGGTGTTGTCCCAGTGGTA-AA-TATT-------A
GCA_000004255.1_v.1.0_rm.out849                    --------ACCAACGTTGTGTTGGTCTAGTGGT-AAATCTTC-------C
GCA_000004255.1_v.1.0_rm.out852                    --------ACTAACGTTGTGTTGGTCCAGTGGT-AAATCTCT-------G
GCA_000004255.1_v.1.0_rm.out871                    --------ACCAACGTTGTGTTAGCCCAGTAAT-AAATCTCC-------C
GCA_000004255.1_v.1.0_rm.out888                    --------------------------------------------------
GCA_000004255.1_v.1.0_rm.out894                    --------------------------------------------------
GCA_000004255.1_v.1.0_rm.out895                    --------------------------------------------------
GCA_000004255.1_v.1.0_rm.out906                    ---------ACCAACGTGGTGTTGTCCAATGGTAAAT-CTTC-------C
GCA_000004255.1_v.1.0_rm.out959                    --------ACCAACGTTGTGTTGATCCAGTGGTAAAT-CTCCCAAGTGGA
GCA_000004255.1_v.1.0_rm.out997                    --------ACCAACGTAGTGTTGTCCTAGTGGAAAAT-CTCTAAGGTGGA
GCA_000004255.1_v.1.0_rm.out1002                   --------ACCAATGTTGTGTTGGCCCAGTGATAAAT-CTTC--------
GCA_000004255.1_v.1.0_rm.out1005                   --------ACCAACGTTGTGTTGGCTCAGTGGTAAAT-CTCC--------
GCA_000004255.1_v.1.0_rm.out1006                   --------ACCAACGTTGTGTTGGCCCAGTAGTAAAT-CTTACAGGTGGA
GCA_000004255.1_v.1.0_rm.out1009                   ----------------------GGAGGTAC---TGGG-TTTG-------A
GCA_000004255.1_v.1.0_rm.out1033                   --------ACCAAAGTTGTGTTGGCCTAGTGGTAAAT-CTCT--------
GCA_000004255.1_v.1.0_rm.out1045                   --------ACCAACGATGAGTTGACCTAATGGTCAAATTTCT-TG----G
GCA_000004255.1_v.1.0_rm.out1072                   --------ACCAATGTTGTGTTGGCCCAATGGTAAAT-CTCT--------
GCA_000004255.1_v.1.0_rm.out1126                   --------------------------------------------------
GCA_000004255.1_v.1.0_rm.out1132                   --------------GTGGTGGTGTCCTAGTGGTAAAT-TTTC-------T
GCA_000004255.1_v.1.0_rm.out1147                   --------ACGAACGTTGTGTTGATCTAGTGGTAAAT-CTTC--------
GCA_000004255.1_v.1.0_rm.out1187                   -----------AACGTTGTATTGGCCCAGTGATAAAT-CTCA--------
GCA_000004255.1_v.1.0_rm.out1200                   --------------------------------------------------
GCA_000004255.1_v.1.0_rm.out1215                   --------------GTGTTGCTGGTCCAGTGGTAAAT-CTCCCAGGTGGA
GCA_000004255.1_v.1.0_rm.out1219                   -------------------------------------------------T
GCA_000004255.1_v.1.0_rm.out1251                   --------------------------------------------------
GCA_000004255.1_v.1.0_rm.out1254                   --------------------------------------------------
GCA_000004255.1_v.1.0_rm.out1276                   --------------------------------------------------
GCA_000004255.1_v.1.0_rm.out1287                   ------------------TGTTATGCCAGTAGTAAAT-CTTT-------C
GCA_000004255.1_v.1.0_rm.out1300                   --------ACCAACGTTGTGTTGGCCCAGTGGTAAAT-CTCC--------
GCA_000004255.1_v.1.0_rm.out1305                   -------------------------------------------------T
GCA_000004255.1_v.1.0_rm.out1314                   --------ACCAACGTTGTGTTGGCCCAGTGAT-AAATCTCC-------C
GCA_000004255.1_v.1.0_rm.out1323                   --------ATCAACGTTGTGTTGGCCCAGTGGTAAAT-CTCT--------
GCA_000523005.1_Ahal_1.0_rm.out13                  --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out19                  --------ACCAACGTTGTGTTGGTCCAGTAGTAAAT-CTTTCAGGTGGA
GCA_000523005.1_Ahal_1.0_rm.out20                  --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out28                  --------ACTAACGTTGTGTTGGCCCAGTGGTAAAT-CTCCTAAGTGGA
GCA_000523005.1_Ahal_1.0_rm.out41                  --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out48                  --------ACCAACATTGTGTTGGTCCAGTGGTAAAT-CTTTCAGGTGAA
GCA_000523005.1_Ahal_1.0_rm.out79                  -----------AACATTGTGTTGGTCCAGTAGTAAAT-CTCT--------
GCA_000523005.1_Ahal_1.0_rm.out80                  -------------------------CTAGTGGTAAAT-CTTTCAGGTATA
GCA_000523005.1_Ahal_1.0_rm.out94                  --------ACCAACGTTGTGTTGGCCCAGTGGTAAAT-CTCT--------
GCA_000523005.1_Ahal_1.0_rm.out104                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out105                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out114                 -------------------------CTAGTGAGGGAT-CTCT--------
GCA_000523005.1_Ahal_1.0_rm.out117                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out121                 --------------GTGGTGTTGTCCCCGTGGTAAAT-TTTC-------T
GCA_000523005.1_Ahal_1.0_rm.out157                 --------ACCAACGTTGTGTTGGCCCAGTGATAAAT-CTTTCAGGTAGA
GCA_000523005.1_Ahal_1.0_rm.out159                 --------ACCAACGTTGTGTTGGCCCAGTAGTATAT-CTCC--------
GCA_000523005.1_Ahal_1.0_rm.out160                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out176                 --------ACCAACGTTGTGTTGGCCCAGTAGTAAAA-CTCC--------
GCA_000523005.1_Ahal_1.0_rm.out182                 -------------------------------------------ATCTCCG
GCA_000523005.1_Ahal_1.0_rm.out188                 --------ACAAACGTTGTCTTGGCCCAGTGGTAAAT-TTTCTAGGTGGA
GCA_000523005.1_Ahal_1.0_rm.out192                 -----------AATGTTGTGTTGGCCCAGTGGTAAAT-CT-C--------
GCA_000523005.1_Ahal_1.0_rm.out194                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out198                 --------ACCAACGTTGTGTTGGCCTAGTGGTAAAT-TTCC--------
GCA_000523005.1_Ahal_1.0_rm.out201                 --------ACCAAAGTTGTGTTGGCCTAGTAGT-AAATCTCT-------C
GCA_000523005.1_Ahal_1.0_rm.out203                 --------ACCAATGTGGTGTTGGCCCAGTGGTAAAT-CTCGTAGGTAGA
GCA_000523005.1_Ahal_1.0_rm.out210                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out211                 --------ACCAACGTTGTGTTGGCCCAGTGGTAAAT-ATCT--------
GCA_000523005.1_Ahal_1.0_rm.out217                 --------ACCAACGTTCTGTTAGTCTAGTGGTAAAT-TTTT-------C
GCA_000523005.1_Ahal_1.0_rm.out223                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out236                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out251                 --------ACCAACGTTGTGTTGGCTCAATGGTAAAT-CTCT--------
GCA_000523005.1_Ahal_1.0_rm.out252                 ----------------------GGCCCAGTGGT-AAACCTCC-------C
GCA_000523005.1_Ahal_1.0_rm.out259                 --------ACCAACGTTGTGTTGGCCCAATGGTAAAT-CTCT--------
GCA_000523005.1_Ahal_1.0_rm.out267                 -----------AACGTTGTGTTGGCCCAGTGGTAAAT-CTTC--------
GCA_000523005.1_Ahal_1.0_rm.out282                 --------ACCAACGTTGTGTTGGCCCAGTGAT-AAATCTCC-------C
GCA_000523005.1_Ahal_1.0_rm.out284                 --------ACCAATGTTGTGTTGGCCCAGTGGTAAAT-CTCT--------
GCA_000523005.1_Ahal_1.0_rm.out291                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out305                 --------ACCAACGTTGTGTTGGTCCAGTGGT-AAATCTCC-------C
GCA_000523005.1_Ahal_1.0_rm.out323                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out332                 ------------ACGTTGTGTTGGTCCAGTGGTAAAT-TTCA--------
GCA_000523005.1_Ahal_1.0_rm.out335                 -------------ACTTGGTGTTGTCCAATGGTAAAT-CTCT-------C
GCA_000523005.1_Ahal_1.0_rm.out339                 --------ACCAACGTTGTGTTGGCCCAGTGGT-AAATCTCT-------C
GCA_000523005.1_Ahal_1.0_rm.out344                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out349                 --------ACCAACGTTGTGTTGGCCCAGTAGTAAAT-CTCT--------
GCA_000523005.1_Ahal_1.0_rm.out365                 --------ACCAACGTTGTGTTGACCCAGTGGTAAAT-CTTTTAGGTGGA
GCA_000523005.1_Ahal_1.0_rm.out373                 ----------------------------------AAT-CTCT-------C
GCA_000523005.1_Ahal_1.0_rm.out379                 --------ACCAACGTTGTATTGGCTCAGGGGT-AAATTTCC-------T
GCA_000523005.1_Ahal_1.0_rm.out399                 --------ACCAACGTTGTGTTGGCCCAGCGGT-AAATCTTC-------C
GCA_000523005.1_Ahal_1.0_rm.out413                 ---------CCAACGTTGTGTTGGTCCAGTGATAAAT-CTCC--------
GCA_000523005.1_Ahal_1.0_rm.out451                 --------ACCAACGTTGTGTTGGCCCAGTGATAAAT-CTCCCAGGTGGA
GCA_000523005.1_Ahal_1.0_rm.out452                 --------ACCAACGTGGTGTTGTTCTAATGGTAAAT-TTTT-------T
GCA_000523005.1_Ahal_1.0_rm.out459                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out460                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out491                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out504                 --------ACCAACGTTATGTTGGCCCAGTGGTAAAT-CTCC--------
GCA_000523005.1_Ahal_1.0_rm.out510                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out511                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out520                 --------ACCAACCTTGTGCTGGCCCAGCGGTAAAT-TTTCCAGATGGA
GCA_000523005.1_Ahal_1.0_rm.out521                 --------ACCAACGTTGTGTTGGCCCAGTGGTAAAT-CTCT--------
GCA_000523005.1_Ahal_1.0_rm.out524                 ------------------------------------AATCTC-------C
GCA_000523005.1_Ahal_1.0_rm.out542                 --------ACCAACGTTGTGTTGGCCCAGTGGTAAAT-CTCC--------
GCA_000523005.1_Ahal_1.0_rm.out543                 --------ACCAACGTTGTGTTGGCCTAGTGGTAAAT-CTTC--------
GCA_000523005.1_Ahal_1.0_rm.out550                 --------ACCAACGTTGTGTTGGCCCAGTGGTAAAT-CTCC--------
GCA_000523005.1_Ahal_1.0_rm.out551                 --------ACCAATGTTGTATTGGGCCAGTGGTAAAT-CTTT--------
GCA_000523005.1_Ahal_1.0_rm.out561                 --------ACCAACGTTGTGTTGGCCCAGTGGTAAAT-CTCT--------
GCA_000523005.1_Ahal_1.0_rm.out565                 -----------------------GCCCAGCGGT-AAATCTCC-------C
GCA_000523005.1_Ahal_1.0_rm.out566                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out577                 --------ACCAACGTTGTATTGGCCTAGTGGTAAAT-CTCACATGTGAA
GCA_000523005.1_Ahal_1.0_rm.out584                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out588                 --------ACCAACGTTGTGTTGGCCCAGTGGTAAAT-CTCC--------
GCA_000523005.1_Ahal_1.0_rm.out589                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out591                 ---------------TACTGTTGGCCCAGTGGT-AAATCTCC-------C
GCA_000523005.1_Ahal_1.0_rm.out595                 --------ACCAACGTTGTGTTGGCCCAGTGGTAAAT-CTTC--------
GCA_000523005.1_Ahal_1.0_rm.out600                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out601                 ---------------------------------AAAT-CTCC-------C
GCA_000523005.1_Ahal_1.0_rm.out604                 --------ACCAACGTTGTGTTGGCCCAGGGGTAAAT-CTTC--------
GCA_000523005.1_Ahal_1.0_rm.out613                 --------ACCAACGTTGTGTTGGCCTAGTGGTAAAT-CTCTCAGGTGGA
GCA_000523005.1_Ahal_1.0_rm.out617                 --------ACCAACGTTGTGTTGGTCCAGTGGTAAAT-CTCTCAGGTACG
GCA_000523005.1_Ahal_1.0_rm.out618                 -----------AACGTTGTGTTGGCCCAGTTGT-AAATCTCC-------C
GCA_000523005.1_Ahal_1.0_rm.out621                 --------ACCAACATTGTGTTGGCCTAGTGGTAAAT-CTCT--------
GCA_000523005.1_Ahal_1.0_rm.out622                 ------------------TGTTGGTTCAGTGGT-AAATCTCC-------T
GCA_000523005.1_Ahal_1.0_rm.out631                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out632                 --------ACAAACGTTGTGTTGGACCAGTGGT-AAATTTTA-------C
GCA_000523005.1_Ahal_1.0_rm.out633                 --------ACCAACGTTGTGTTGGACCAGTGGT-AAATTTTA-------C
GCA_000523005.1_Ahal_1.0_rm.out652                 ------------------TGTTGATCTAGTGGT-AAATCTCT-------C
GCA_000523005.1_Ahal_1.0_rm.out668                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out672                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out685                 --------ACCAACATCGTGTGAGTCCAGTGGT-AAATCTCT-------C
GCA_000523005.1_Ahal_1.0_rm.out695                 -------------------------------------------------C
GCA_000523005.1_Ahal_1.0_rm.out716                 --------ACCAACGTTATGTTGGCCCAGTGGT-AAATCTCC-------C
GCA_000523005.1_Ahal_1.0_rm.out726                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out729                 ------------------TGTTGGCCCAGTGGTAAAT-CTCCCAGGTGGA
GCA_000523005.1_Ahal_1.0_rm.out736                 --------ACCAATGTTGTGTTGGTCCAGTGGTAAAT-TTCCTAGATAGA
GCA_000523005.1_Ahal_1.0_rm.out750                 --------ACCAACGTTGTGTTGGTCCAGTGGT-AAATCTCA-------C
GCA_000523005.1_Ahal_1.0_rm.out758                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out775                 ---------CCAACGTTGTGTTGGCCCAGCGGT-AAATCTCT-------C
GCA_000523005.1_Ahal_1.0_rm.out776                 --------ACCAACATTGTGTTGGCCTAGTGGTAAAT-TTCA--------
GCA_000523005.1_Ahal_1.0_rm.out777                 --------ACCAACGTTGTGTTGGTCCGGTGGTAAAT-CTCC--------
GCA_000523005.1_Ahal_1.0_rm.out780                 --------ACCAACGTTGTGTTGGCCCAGTGGTAAAT-CTCCCAGGTC--
GCA_000523005.1_Ahal_1.0_rm.out825                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out832                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out849                 --------ACCAACATTGTGTTGGCCCAGTGGT-AAATCTCC-------C
GCA_000523005.1_Ahal_1.0_rm.out852                 ---------ACCAACGTTGTGTTGGCCAGTGGTAAA----TC-------T
GCA_000523005.1_Ahal_1.0_rm.out855                 --------ACCAACGTTGTGTTGGTCCAATGGTAAAT-CTCG--------
GCA_000523005.1_Ahal_1.0_rm.out865                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out868                 --------ACCAACGTGGTCTTGGTCCTGTGGTAATT-TTCT-------A
GCA_000523005.1_Ahal_1.0_rm.out877                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out886                 --------ACCAACGTTGTGTTGGCCCAATGGTAAAT-CTTC--------
GCA_000523005.1_Ahal_1.0_rm.out897                 --------ACCAACGTTGTGTTGGTCCAGTGAT-AAATCTTC-------C
GCA_000523005.1_Ahal_1.0_rm.out902                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out908                 --------ACCAACGTTGTGTTGGACCAGTGGTAAAT-CTTCTAGGTGGA
GCA_000523005.1_Ahal_1.0_rm.out909                 --------ATCAACGTGGTGTTGTCCCAATGGTAAAT-CTTTTAGGTGAA
GCA_000523005.1_Ahal_1.0_rm.out937                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out949                 ---------CCAACGTTGTGTTGACCCAATGGTAAAT-CTCCCAGATAGA
GCA_000523005.1_Ahal_1.0_rm.out954                 ---------ACCAACTTTGTGTTGACCAGTGGTAAAT-CTCT-------C
GCA_000523005.1_Ahal_1.0_rm.out956                 --------ACCAATGTTGTATTGACCCAGTGGTAAAT-TTTCTAAGTGGA
GCA_000523005.1_Ahal_1.0_rm.out959                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out964                 --------ACCAATGTTTTGTTGGCCCAGTGGTAAAT-CTCT--------
GCA_000523005.1_Ahal_1.0_rm.out965                 --------ACCAACGTTGTGTTGGCCCAGTGGTAAAT-CTCC--------
GCA_000523005.1_Ahal_1.0_rm.out987                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1037                -----------AATGTGATGTTGGTCCAGCGGTAAAT-CTCCTAAGTGGA
GCA_000523005.1_Ahal_1.0_rm.out1040                --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1047                --------ACCAACGTTGTGTTGGCCCAGTGGT-AAATCTCC-------T
GCA_000523005.1_Ahal_1.0_rm.out1059                --------ACCAACGTTGTGTTGGTCCAGTGGTAAAT-CTTT--------
GCA_000523005.1_Ahal_1.0_rm.out1075                --------ACCAACATTGTGTTGGCCCAGTGGTAAAT-CTTC--------
GCA_000523005.1_Ahal_1.0_rm.out1084                ------------------TGTTGGTCCAATGGT-AAATCTTC-------T
GCA_000523005.1_Ahal_1.0_rm.out1085                --------ACCAACGTTGTGTTGGTCCAGTGGT-AAATCTCC-------C
GCA_000523005.1_Ahal_1.0_rm.out1096                --------ACCAACGTTGTGTTGACCCAGTGGTAAAT-CTCT--------
GCA_000523005.1_Ahal_1.0_rm.out1100                --------ACCAACGTTGTGTTGGTCCAGTCGTAAAT-CTTCTAGATGGA
GCA_000523005.1_Ahal_1.0_rm.out1101                --------ACCAACGTTGTGTTGGCCCAATGGTAAAT-CTCC--------
GCA_000523005.1_Ahal_1.0_rm.out1132                --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1150                --------ACCAACGTGGTGTTGTT-----------C-TAGT-------A
GCA_000523005.1_Ahal_1.0_rm.out1195                --------ACCAACGTTGTGTTGGCCTAGTGGTAAAT-CTCC--------
GCA_000523005.1_Ahal_1.0_rm.out1196                --------ACCAACGTTGTGTTGGCCCAGTGGTAAAT-CTTC--------
GCA_000523005.1_Ahal_1.0_rm.out1198                --------ATCAACGTTGTGTTGGTCCAGTAGTAAAT-CTTCCAGATGGA
GCA_000523005.1_Ahal_1.0_rm.out1199                --------ATCAACGTTGTGTTGGTTTAGTGTTAAAT-CTTT-------C
GCA_000523005.1_Ahal_1.0_rm.out1200                --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1210                -----------------------GCCCAATGGTAAAT-CTCC-------C
GCA_000523005.1_Ahal_1.0_rm.out1212                --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1231                --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1239                --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1240                --------ACCAACGTTGTGTTGGCCCAGTGGT-AAATCTCC-------C
GCA_000523005.1_Ahal_1.0_rm.out1254                --------ACCAACATTGTGTTGGCCCAGTGGTAAAT-TTCCCAGGTAGA
GCA_000523005.1_Ahal_1.0_rm.out1260                --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1289                --------ACCAACGTTGTGTTGGCCCAGTGGTAAAT-CTCC--------
GCA_000523005.1_Ahal_1.0_rm.out1294                ------------------TGTTGGCCTAGTGGTAAAT-CTCC--------
GCA_000523005.1_Ahal_1.0_rm.out1302                --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1316                --------ACCAACGTTGTGTTGGCCCAGTGGT-AAATCTCT-------C
GCA_000523005.1_Ahal_1.0_rm.out1317                --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1318                --------ACCAACGTTGTGTTGGTCTAGTGAT-AAATTTTT-------C
GCA_000523005.1_Ahal_1.0_rm.out1319                --------ACCAACGTTGTGTTGGTCTAGTGGTAAAT-CTCC--------
GCA_000523005.1_Ahal_1.0_rm.out1321                --------ACCAATGTTATGTTGGTCAAGTAGT-AAATCTTC-------C
GCA_000523005.1_Ahal_1.0_rm.out1341                --------ACCAACGTTGTGTTTGCTCAGTGGTAAATCTTTC-------C
GCA_000523005.1_Ahal_1.0_rm.out1348                --------ACCAACATTGTGTTGGCCCAGTGGTAAAT-CTCC--------
GCA_000523005.1_Ahal_1.0_rm.out1349                -----------AACATTGTGTTGGCCCAGTGGTAAAT-CTCC--------
GCA_000523005.1_Ahal_1.0_rm.out1370                --------ACCAACGTTGTGTTGGTCCAGTG-------------------
GCA_000523005.1_Ahal_1.0_rm.out1371                --------ACCAACGTTGTGTTGGCTCAGTGGT-AAATCTCC-------C
GCA_000523005.1_Ahal_1.0_rm.out1378                --------ACCAACGTTGTGTTGGTCCAGTGGTAAAT-CTTC--------
GCA_000523005.1_Ahal_1.0_rm.out1404                --------ACCAACGTTGTGTTGGCCCAGTGAT-AAATCTCC-------C
GCA_000523005.1_Ahal_1.0_rm.out1409                --------ACCAACATTGTGTTGGCTTAGTGGTAAAT-CTCC-------T
GCA_000523005.1_Ahal_1.0_rm.out1417                --------ACCAACGTTGTGTTGGTCCAGTGGTAAAT-CTCC--------
GCA_000523005.1_Ahal_1.0_rm.out1419                --------ACCAAAATGGTGTTGTCTCAGTGGTAAAT-CTCTCAGGTGAA
GCA_000523005.1_Ahal_1.0_rm.out1420                --------ACCAACGTTGTGTTGGTCCACTGGT-AAATCTTC-------T
GCA_000523005.1_Ahal_1.0_rm.out1437                --------ATCAACGTTGTGTTGGCACAGTGGT-AAATCTCC-------C
GCA_000523005.1_Ahal_1.0_rm.out1442                --------ACCAATGTTGTGTTGGCCCAGTGGT-AAATCTCC-------C
GCA_000523005.1_Ahal_1.0_rm.out1448                --------ACCAACATTGTATTGGCTCAGTGGT-AAATCTCT-------C
GCA_000523005.1_Ahal_1.0_rm.out1451                --------ACCGACGTTGTGTTGGTCCAGTAGTAAAT-CTCC--------
GCA_000523005.1_Ahal_1.0_rm.out1457                --------ACCAACGTTGTGTTGGTCCAGTGAT-AAATCTTT-------C
GCA_000523005.1_Ahal_1.0_rm.out1470                --------ACCAACGTTGTGTTGGCCCAGTGGTCAAT-CTCC--------
GCA_000523005.1_Ahal_1.0_rm.out1472                ---------------------------AGTGATAAAT-CTTT-------T
GCA_000523005.1_Ahal_1.0_rm.out1478                --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1481                --------ACCAACGTTGTGTTAGCCCAGTGGTAAAT-CTCT--------
GCA_000523005.1_Ahal_1.0_rm.out1516                --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1582                --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1595                --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1660                --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1673                --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1677                --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1686                --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1713                --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1853                ---------ATCAACGTTGTGTTAGCCAGTGGTAAAT-CTCTCAGATAGA
GCA_000523005.1_Ahal_1.0_rm.out1854                ---------ATCAACGTTGTATTAGCCAGTGGTAAAT-CTCTCAGATAGA
GCA_000523005.1_Ahal_1.0_rm.out1860                --------ACCAACGTTGTGTTGGTCCAGTGGTAAAT-TTCCCAGGTGGA
GCA_000523005.1_Ahal_1.0_rm.out1868                --------ACCAACATTGTGTTGGCCCAGTGGTAAAT-CTCC--------
GCA_000523005.1_Ahal_1.0_rm.out1869                --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1887                --------ACCAACGTTGAGTTGGCCTAGTGGTAAAT-CTCC--------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out3     --------ACCAACATTGTGTTGGCCCAGTGGTAAAT-CTCCCAGACGGA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out11    --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out20    --------ACCAACGTGGTGTTGGCCTAGTGGTAAAT-CTCC--------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out23    --------ACCAACGTTGTGTTAGTCCAGTGGTAAAT-CTCC--------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out28    --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out29    --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out44    --------ACCAATGTTGTATTGGCCCAGTAGTAAAT-CTCGCAGGTGGA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out57    ------------------TGTTGGCTCAGTGGTAAAT-CTCC-------C
GCA_902850255.1_pseudohap_a_tetraploid_rm.out102   --------ACCAACGTTGTGTTGGCCCAGTGGTAAAT-CTCC--------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out104   -----------ACCAACGTTGTGTTGGCCTAGTGGTA-AATC-------T
GCA_902850255.1_pseudohap_a_tetraploid_rm.out115   -------------------------------TCCCAG-GTGG-------A
GCA_902850255.1_pseudohap_a_tetraploid_rm.out117   --------ACCAACGTTGTGTTGGCCCAGTGGTAAAT-CTCC--------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out143   --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out183   --------ACCAACGTTGTGTTGGTCTAGTGGTAAAT-CTCG--------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out227   ----------CAAAGTTGTGTTGGCCCAATGGTAAAT-CTCTTTGGTGCA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out231   --------ACCAAAGTTGTGTTGGTCCAGTGGTAAAT-CTCTTAGGTGGA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out232   --------ACCAACGTTGTGTTGGCCCAGTGGTAAAT-CTCTTAGGTAGA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out254   --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out280   ------------------TGTTATGCCAGTAGTAAAT-CTTT-------C
GCA_902850255.1_pseudohap_a_tetraploid_rm.out283   ------------AGATCTAGTAGGTGGAGGTACTGGG-TTCC-------A
GCA_902850255.1_pseudohap_a_tetraploid_rm.out299   --------ACAAACGTTGTATTGGCCCAATGGTAAAT-CTCT--------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out317   --------ACCAACATTGTGTTGGTCCAGTGGTAAAT-CTCCCAGGTGGA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out343   --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out352   --------ACCAACGTTGTGTTGGTCCAGTAGT-AAATCTCG-------C
GCA_902850255.1_pseudohap_a_tetraploid_rm.out353   --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out361   --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out362   --------ACCAACGTGGTGTTAGTCCAGTGATAAAT-CTTT--------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out387   --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out414   --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out456   --------ACCAGAGTTGTGTTGGCCGAGTGGTAAAT-CTCCCAGGTGCA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out466   --------ATCGACGTTGTGTTGGCCCAGTGGTAAAT-CTCC--------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out469   --------ACCAATGTTGTGTTGGTCCAGTGGTAAAT-CTCC--------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out478   --------ACCAACGTTGTATTGGTCCAGTGGT-AAATCTCG-------C
GCA_902850255.1_pseudohap_a_tetraploid_rm.out479   --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out494   ---------ACTAACGTTGTGTTGCCCAGTGGTAAAT-CTCC--------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out497   --------ACCAACGTTGTGTTGGTCCAGTGGTAAAT-CTTC--------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out498   --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out512   --------ACAAACGTTGTCTTGGCCCAGTGGTAAAT-TTTCTAGGTGGA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out524   --------ACCAACGTTGTGTTGGTCCAGTGGT-AAATCTCC-------C
GCA_902850255.1_pseudohap_a_tetraploid_rm.out557   --------ACCAACGTGGTGTTATCCTAGTGGTAAAT-CTCCCAGGTAGA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out562   --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out563   --------ACCAACGTTGTGTTGGCCCAGTGGTAAAT-CTCT--------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out566   --------ACCAAGGTTGTGTTGGCCTAGTGGTAAAT-CTCTCAGGTGGA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out582   --------ACCAACGTTGTGTTGGCCCAGTGGTAAAT-CTCT--------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out594   --------ACCAACATTGTGTTGGCCCAGTGAT-AAATCTCT-------C
GCA_902850255.1_pseudohap_a_tetraploid_rm.out597   --------ACCAACGTTGTGTTGGCCCAGTGGT-AAATCTCC-------C
GCA_902850255.1_pseudohap_a_tetraploid_rm.out602   --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out604   ---------ACAAACGTGGTGTTGCTCCGTGGTAAAT-CTTC-------C
GCA_902850255.1_pseudohap_a_tetraploid_rm.out619   --------ACCAACGTTGTGTTGATCCAGTGATAAAT-CTCTCAGGTGAG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out655   --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out657   --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out664   --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out666   --------ACCAACGTTATGTTGGCCCAGTGGTAAAT-CTCC--------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out674   --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out675   --------ACCAATGTTGTGTTGGCCCGGTGGTAAAT-CTCT--------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out683   ---------------------------------------TCT-------C
GCA_902850255.1_pseudohap_a_tetraploid_rm.out697   --------ACCAACGTTGTGTTGGCCCAGTGGTAAAT-CTCTCAGGTAGA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out703   --------ACCAACGTTGTGTTGGCCTAGTGGTAAAT-CTCCCAGGTGGA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out709   --------ACCAAAGTTGTGTTGGCCCAGTGGTAAAT-CTTC--------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out726   --------ACCAACGTTGTGTTGGCCCAGTGAT-AAATCTCT-------T
GCA_902850255.1_pseudohap_a_tetraploid_rm.out736   --------ACCAACGTTGTGTTGGCCCAGTGGTAAAT-CTCC--------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out742   --------ACCAACGTGGTGTTAGTCCAGTGGTAAAT-CTTT--------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out745   --------ACCAACGTTGTGTTGGCCTAGTGGTAAAT-CTCC--------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out748   ------------------TGTTGGCCCAATGGTAAAT-CTCC--------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out765   --------ACCAACGTTGTGTTGGCCCAGTGGTAAAT-CTCC--------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out767   --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out774   ------------------TGTTGGTCCAGTGGTAAAT-CTTC--------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out778   --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out781   --------ACCAACGTTGTGTTGGCCCAGTGGTAAAT-CTCC--------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out784   --------ACCAACGTTGTGTTGGTCCAGTGGTAAAT-CTTC--------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out807   --------ACCAACGTTGTGTTGGTCCAGTGGTAAAT-CTCC--------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out819   --------ACCAACGTTGTGTTGGCCCAATGGTAAAT-ATTCCAGGTGGA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out840   --------ACAAACGTTGTATTGGCCCAATGGTAAAT-CTCT--------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out843   --------ACCAACGTTGTGTTGGTCCAGTGGTAAAT-CTTT--------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out845   --------ATTAACGTTGTGTTGGCCCAGTGATAAAT-CTCT--------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out865   --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out886   --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out911   --------ACCATCGTTGTGTTGGCCCAGTGGTAAAT-CTCC--------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out926   -----------ACCGACGTTGTGTTGGCCCAGTGGTA-AATC-------T
GCA_902850255.1_pseudohap_a_tetraploid_rm.out933   --------ACCAACATTGTGTTGGCCCAGTGGTAAAT-CTTC--------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out942   --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out948   --------ACCAACGTTGTGTTGTCGCAGTGGTAAAT-CTCTCAAGTAGA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out950   --------ACCAACGTTGTGTTGGCCCAGTGGTAAAT-CTTC--------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out953   --------ACTAAAGTTGTGTTGGCCCAGTGGTAAAT-CTCTCAGGTGGA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out968   --------ACAAACGTTGTCTTGGCCCAGTGGT-AAATTTTC-------T
GCA_902850255.1_pseudohap_a_tetraploid_rm.out970   --------ACCAACGCTGTGTTGGCCCAGTGGTAAAT-CTCC--------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out976   ------------------TGTTGTCCCAATGGTAAAT-CTTT-------T
GCA_902850255.1_pseudohap_a_tetraploid_rm.out993   --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1001  --------ACCAACGTTGTGTTGGCCCAAAAGTAAAT-CTCC--------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1006  --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1026  --------ACCAACCCGGTGTTGTCCCAGTGATAAAT-CTTCTGGGTGGA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1030  --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1050  --------ACCAACATTGTGTTGGCCCAGTGGTAAAT-CTCT--------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1060  --------ACCAACGTTGTGTTGGCCCAGTGGTAAAT-CTCC--------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1083  ------------ACCAACGTGATGTTGGCTGGTAAAT-CTCCTAGGTGGA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1090  --------ACCAACGTTATGTTGGCCCAGTGGTAAAT-CTTC--------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1098  ------------------------------GGTAAAT-CTCT--------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1101  --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1108  --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1124  --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1136  ------------------------------GGTAAAT-CTCC-------C
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1155  ----------CCAACTTGGTGTTGT---------CCG-GTGG-------T
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1156  --------ACCAACGAAGTGTTGGCCCAGTGGTAAAT-CTCC--------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1163  --------ACCAACGTTGTGTTCGTCTAGTGATAAAT-CTTT-------C
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1164  --------ACCAACATTGTGTTGGTTCAGTGGTAAAT-CTTTCAGGTGGA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1208  --------ACCAACGTGGTGTTGTCCCAGTGGTAAAT-CTCCCAGGTGGA

GCA_000001735.2_TAIR10.1_rm.out0                   AGGTG-GA------AGTGTTGGATTCAAGGCATATTGA--------AAGA
GCA_000001735.2_TAIR10.1_rm.out7                   AGGT-------GAAAGTACTGGATTCAAGACACGTTGG--------GAGG
GCA_000001735.2_TAIR10.1_rm.out11                  CGGTG-TA------GGTGCGGGGTTCGAGGCACATTAA--------GACA
GCA_000001735.2_TAIR10.1_rm.out12                  GTAGT--------------TGAGTTCGAGGCACGTTA-G-------GAGG
GCA_000001735.2_TAIR10.1_rm.out16                  GGATG-GA------GGTGATGGGTTCGAGAC-------------------
GCA_000001735.2_TAIR10.1_rm.out18                  AGATG-AA------AGTATTGTGTTCGACGTACGTTGA--------AAAT
GCA_000001735.2_TAIR10.1_rm.out19                  GGTGT--------------TGGGTTCGAGGCACGTTG-G-------GAGG
GCA_000001735.2_TAIR10.1_rm.out25                  AGGTG-GA------GGTGTTGGATTCGAGGCACGTTGG--------GAAG
GCA_000001735.2_TAIR10.1_rm.out33                  AGGTA-GA------GGTGCTGAGTTCGAAGCATATTGG--------AAGA
GCA_000001735.2_TAIR10.1_rm.out34                  GGTGC--------------TGGGTTCGAGTCACGTTG-G-------AAGG
GCA_000001735.2_TAIR10.1_rm.out35                  ---TG-GG------AGTGATGGGTTCGAAGCACGTTGA--------GAGG
GCA_000001735.2_TAIR10.1_rm.out36                  AGGTA-GA------AGTGTTGGGTTCCAGATACGTTGA--------AAAA
GCA_000001735.2_TAIR10.1_rm.out55                  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out56                  GGTGT--------------TGGGTTCGAGGCACGTTG-A-------GAGA
GCA_000001735.2_TAIR10.1_rm.out61                  GGTGA--------------TGGGTTCGAGGCACGCTG-G-------GAGA
GCA_000001735.2_TAIR10.1_rm.out65                  AAATA-AA------TATGATTGGTTCAACGTAAGTTGG--------AAAT
GCA_000001735.2_TAIR10.1_rm.out68                  AGGTG-GA------AGTGCTGAGTTCGAAACATATTGG--------GATG
GCA_000001735.2_TAIR10.1_rm.out70                  AGGT-------G-------GAAGTTCGAAGCATGTTAG--------GAGG
GCA_000001735.2_TAIR10.1_rm.out73                  AAATG-GA------AGTTCTGCTTCGATGCTTATTAGA--------AAAA
GCA_000001735.2_TAIR10.1_rm.out77                  AGATG-GA------GGTGTTGAGTTTGATGCACGTTCG--------GAGG
GCA_000001735.2_TAIR10.1_rm.out81                  ATGTG-AA------GGTGATAGATTTGACATCCGTTGA--------CATA
GCA_000001735.2_TAIR10.1_rm.out85                  GGTGA--------------TGGGTTCGAAACACGTTG-G-------AAAT
GCA_000001735.2_TAIR10.1_rm.out91                  ---------------GTGTTGGAT---TCGACGTTAAT--------TAGA
GCA_000001735.2_TAIR10.1_rm.out98                  -----------------------TTCGAAATCCGTTGG--------AAGA
GCA_000001735.2_TAIR10.1_rm.out103                 AGGTA-AA------GGTATTGGGTTGAATGTCCATTGT--------GAAA
GCA_000001735.2_TAIR10.1_rm.out110                 AGGTG-GA------AGTGCTGGATTCAA-----GGTGG--------GAGG
GCA_000001735.2_TAIR10.1_rm.out116                 AGGTG-GA------AGTATTAGGTTCGACGCCCGTCGG--------GAGG
GCA_000001735.2_TAIR10.1_rm.out119                 AGGTG-GA------ATTGTTGTGTTCGAAGCATATTGG--------AAAA
GCA_000001735.2_TAIR10.1_rm.out126                 AGGTG-GA------GGTGATGGGTTTGAGACACGTTGA--------GAGA
GCA_000001735.2_TAIR10.1_rm.out137                 CCCTG-GA------AGTGCTGGGTTCGAGACATGTTGG--------GAAG
GCA_000001735.2_TAIR10.1_rm.out143                 --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out149                 AGTTT-AA------GGTGCTGAGTTTCAGACACGTTGG--------AATA
GCA_000001735.2_TAIR10.1_rm.out155                 AGT--------------------TT------CGACATT--------CGAG
GCA_000001735.2_TAIR10.1_rm.out158                 --GTG-GA------GGTGATAGGTTCGAGGCACGTTGG--------GAGG
GCA_000001735.2_TAIR10.1_rm.out175                 --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out177                 --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out179                 AGGTG-GA------GATGCTGGGTTCAAGGTACGTTGG--------GAGA
GCA_000001735.2_TAIR10.1_rm.out181                 AGGT-------GGAGGTGCTGGGTTCGGCGCACGTT--------------
GCA_000001735.2_TAIR10.1_rm.out187                 ATG--------------------C-----------ATG--------TGGA
GCA_000001735.2_TAIR10.1_rm.out216                 AAATT-TC------CCAACTGGGTTCGACGCCCGTTGA--------GAAG
GCA_000001735.2_TAIR10.1_rm.out218                 --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out223                 --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out225                 AAGTA-GA------GGTATTGGGTTCGAACGTCCATTG--------GAGG
GCA_000001735.2_TAIR10.1_rm.out228                 AGGTA-AA------AATATTAAGTTCGACATCTGTTGA--------GAGG
GCA_000001735.2_TAIR10.1_rm.out229                 AGCCG-ATAA------------ATTCAACGTCCGTTGG--------AAAT
GCA_000001735.2_TAIR10.1_rm.out231                 AGCTG-TA------AGTGCTGGATTCGATGCCCGTTGA--------GA-G
GCA_000001735.2_TAIR10.1_rm.out247                 AAATA-TAGA----GATAATGAGTTCGACGTCTATTAG--------AGAA
GCA_000001735.2_TAIR10.1_rm.out257                 AGGTA-GA------GGTGTTGGGTTCGAAGTCTGTTGG--------GAGG
GCA_000001735.2_TAIR10.1_rm.out261                 --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out263                 AGATG-GA------GGTGTTGAGTTCAAAGCATGTTGG--------GAGG
GCA_000001735.2_TAIR10.1_rm.out264                 AAGTG-GA------GGGATCTCTTCTCCCAGGTAAT--------------
GCA_000001735.2_TAIR10.1_rm.out265                 TGGTA-GA------AGTGTTGGATTCGACATGTTGGAA----------AG
GCA_000001735.2_TAIR10.1_rm.out266                 AGGTG-GA------GGTGCTGAGTTCGA-----GGTGG--------AAGG
GCA_000001735.2_TAIR10.1_rm.out281                 AGGTA-GA------GATGTTAGGTTCGAAACATGTTAT--------GAGG
GCA_000001735.2_TAIR10.1_rm.out283                 GGTGT--------------TGTGTTCGAGGCACGTTG-G-------AAGG
GCA_000001735.2_TAIR10.1_rm.out286                 ------------------------------------------------GA
GCA_000001735.2_TAIR10.1_rm.out288                 AGGTA-CA------TGTGTTAGCTTCGAGGCACATCGG--------AAGA
GCA_000001735.2_TAIR10.1_rm.out310                 AAGTG-AA------GTGTTGGCTTCGACGCCCGATTGA--------GAGG
GCA_000001735.2_TAIR10.1_rm.out313                 AAATA-GA------GGTGTTGGGTTTAAAGCACGTTGA--------GAGG
GCA_000001735.2_TAIR10.1_rm.out315                 AGTGC--------------TCAGTTCGAAGAACGTTG-G-------AAGG
GCA_000001735.2_TAIR10.1_rm.out319                 AGGT-------GGAGGTGCTGGGTTCGAGACAC-----------------
GCA_000001735.2_TAIR10.1_rm.out322                 GGTGC--------------TGGATTCGAGACACGTTG-G-------GAAG
GCA_000001735.2_TAIR10.1_rm.out327                 CCCA-------GGTGGAGGTGTGTTCGAGACACGTTGG--------AAGG
GCA_000001735.2_TAIR10.1_rm.out332                 GGTGA--------------TGTGTTCGAGGCACGTTG-G-------GAGG
GCA_000001735.2_TAIR10.1_rm.out341                 AGGTG-GA------GGTGTTGGATTCGACACAAGTTGG--------GAGA
GCA_000001735.2_TAIR10.1_rm.out344                 AGGTG-GAGATA-----CTGGGT-TCGCCGTTCGTTAG------------
GCA_000001735.2_TAIR10.1_rm.out363                 AAGCA-GA------GGTGTTTAGTTCGAGTTATGTTGT--------AAGG
GCA_000001735.2_TAIR10.1_rm.out364                 AGGTG-TA------GGTGTTGAGCTCGAGGCAC-----------------
GCA_000001735.2_TAIR10.1_rm.out365                 AGATA-GA------GCTGATGGGTTCGACGCCTGTTGG--------AAGG
GCA_000001735.2_TAIR10.1_rm.out376                 ATGT-------GGATGTACTGGGTTTGATGCACGTTGG--------GAAC
GCA_000001735.2_TAIR10.1_rm.out377                 AAGTG-GA------GGTGTAGGGTTCGAGGCATGTTGA--------AAGA
GCA_000001735.2_TAIR10.1_rm.out383                 ATGTA-GA------GGTGCTGGGTTCGAGGTATATTGA--------GAGA
GCA_000001735.2_TAIR10.1_rm.out385                 GGTGT--------------TAGGTTCGAGGTACGTTG-G-------GAGG
GCA_000001735.2_TAIR10.1_rm.out387                 ATATG-GA------GGTGTTGGGTTCAAGGTATGTTGG--------GAAG
GCA_000001735.2_TAIR10.1_rm.out388                 ---TA-GA------AGTGTTGGGTTCGAAGCATGCTGG--------AAAA
GCA_000001735.2_TAIR10.1_rm.out392                 AAGTA-AAAATA-----CCGAATTTCGACGTTCGTTGG--------AAAG
GCA_000001735.2_TAIR10.1_rm.out411                 GAGTA-GA------AGTGATGGATTCGACACCTGTTGG--------AAAG
GCA_000001735.2_TAIR10.1_rm.out412                 AGTTA-GA------AATACTGGGTTTGAGGCATGTTGG--------AAGA
GCA_000001735.2_TAIR10.1_rm.out414                 --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out421                 AGATG-GA------GATGATTAGTTCGAGGCATGTTAG--------AAGG
GCA_000001735.2_TAIR10.1_rm.out430                 --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out431                 --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out435                 GGGTG-AA------GGTAGTAGGTTCAAGGCACGTTAG--------AAGA
GCA_000001735.2_TAIR10.1_rm.out438                 --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out440                 AAGTG-AA------GGTGTTGGATTGTAGCCATGTTGG--------AAGG
GCA_000001735.2_TAIR10.1_rm.out444                 TGGTG-GA------GATACTTGATTCGACGTTTATTGA--------AAAA
GCA_000001735.2_TAIR10.1_rm.out447                 AGGTA-GA------GATGTTGGATTCGACATCTTTAGA--------GATA
GCA_000001735.2_TAIR10.1_rm.out450                 AAGTG-AA------GGTGCTAGGTTCGAAACATGTTGG--------AAAG
GCA_000001735.2_TAIR10.1_rm.out451                 AGGTG-ATAGTAGAATTATTAGATTCGACGCTCGTTAG--------AAGA
GCA_000001735.2_TAIR10.1_rm.out453                 AGGTA-GA------TGTGCTGATTCGAG------GTGG--------GAGG
GCA_000001735.2_TAIR10.1_rm.out455                 AGGTG-GA------GGTGTTGGGTTCGAGACACGTTAG--------TAAT
GCA_000001735.2_TAIR10.1_rm.out456                 AGATA-GA------AATGCTGAGTTCGACGATAATTGA--------GACG
GCA_000001735.2_TAIR10.1_rm.out457                 --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out460                 AGGTA-GA------AGTTCTGGATTATATTTCTATTGG--------GATG
GCA_000001735.2_TAIR10.1_rm.out465                 AAGTG-GA------AGTACTCGGTTCGAGCAAAGTTAG--------AAGG
GCA_000001735.2_TAIR10.1_rm.out467                 AAGTG-GA------AGTGATGGATTCAACTCCCTTGAA--------AAAG
GCA_000001735.2_TAIR10.1_rm.out468                 ----------------------------------TTGG--------AAGG
GCA_000001735.2_TAIR10.1_rm.out470                 ----A-TC------GGTGCTAGCTTCGACGGTCGTTGG--------GAAA
GCA_000001735.2_TAIR10.1_rm.out474                 AATTG-AA------AGTATTGTGTTCGACGTCTGTTTG--------AAAA
GCA_000001735.2_TAIR10.1_rm.out478                 AGGTG-GA------GATGTTGGGTTCGACGTCCATCAA--------AAAA
GCA_000001735.2_TAIR10.1_rm.out481                 --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out494                 AGGTG-GA------GGTGCTAGGTTTGAGATACCTTGG--------AAAG
GCA_000001735.2_TAIR10.1_rm.out496                 GGGT-------GGAGGTGCTGGATTTGAGTCACGTTGG--------GAGG
GCA_000001735.2_TAIR10.1_rm.out500                 AGATA-AA------GGTATTGAGTTTTAGACACGTTGG--------GAGA
GCA_000001735.2_TAIR10.1_rm.out515                 ------CAGGTGGAGGTGTTGGGTTCGAGGCACGTAGG--------GAGG
GCA_000001735.2_TAIR10.1_rm.out516                 AGTGC--------------TGGGTTCGAGTCACGTTG-G-------GAGG
GCA_000001735.2_TAIR10.1_rm.out526                 --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out536                 AGATG-TA------GATATTGGATTAAACGTCTGTTGA--------AAAG
GCA_000004255.1_v.1.0_rm.out84                     GGTAC--------------TGGATTCGACTCCCGTTG-G-------AAGG
GCA_000004255.1_v.1.0_rm.out117                    ------CCAGGGGATGTACTGGATTCGACGTTCATTAG--------GAGG
GCA_000004255.1_v.1.0_rm.out118                    -----------------------------------TGG--------GAGG
GCA_000004255.1_v.1.0_rm.out172                    ------CAGGTGGTGGTACTGGGTTCTACGTCCGTTGG--------GAGG
GCA_000004255.1_v.1.0_rm.out184                    ------CAGGTGGAGGTACTGGGTTCGACGCCCGTTGG--------GAGG
GCA_000004255.1_v.1.0_rm.out199                    ------CAGGTGGAGGTACTGGGTTCGACGCCCGTTGG--------GAGA
GCA_000004255.1_v.1.0_rm.out224                    ---------GTGGAGATCACGGATTCGATTCACGTTGG--------AAGG
GCA_000004255.1_v.1.0_rm.out233                    -GC----------------------------CCATTGG--------GAGG
GCA_000004255.1_v.1.0_rm.out234                    ------CAGGTGAAGGTACTGGGTTCGACGCCCGTTGG--------GAGG
GCA_000004255.1_v.1.0_rm.out240                    GGTAC--------------TGGGTTCGACGTCCGTTG-G-------GAGA
GCA_000004255.1_v.1.0_rm.out248                    GGTAC--------------TGGGTTCGACGCCCGTTG-G-------GAGA
GCA_000004255.1_v.1.0_rm.out259                    AGTAC--------------TGAGTTCGACGCTCATTG-G-------GAGG
GCA_000004255.1_v.1.0_rm.out260                    GGTAC--------------TGGATTCGACGACTGTTG-G-------GAGG
GCA_000004255.1_v.1.0_rm.out275                    GGTAC--------------TGGGTTCGATGCCCGTTG-G-------GAGG
GCA_000004255.1_v.1.0_rm.out314                    ------CAAGTGGAGGTACTGGGTTCGACGCCCGTTGG--------AAGG
GCA_000004255.1_v.1.0_rm.out320                    ------TAGGTAGAGGTACTGGGTTCGACGTTCGTTGG--------AAGG
GCA_000004255.1_v.1.0_rm.out334                    ----------------TACTGGGTTCGACGCCTGTTGG--------GAAG
GCA_000004255.1_v.1.0_rm.out343                    ---TG-GA------GAGACTAGGTTCAATGTTCGTTGG--------GAGG
GCA_000004255.1_v.1.0_rm.out359                    GGTAC--------------TGGGTTCGAGGTCCGTTG-G-------AAGA
GCA_000004255.1_v.1.0_rm.out362                    ------CAGGTGGAGGTATTGGGTTCGACGCCCGTTGG--------GAGG
GCA_000004255.1_v.1.0_rm.out363                    ------CAGATAGAGGTATTAGGTTCGACGTCCGTTAG--------GAGG
GCA_000004255.1_v.1.0_rm.out368                    GATAC--------------TGGGTTCGCCGTCTGTTGGA--------AGA
GCA_000004255.1_v.1.0_rm.out379                    GATAT--------------TGGGTTCGACGTTTGTTG-G-------GCGG
GCA_000004255.1_v.1.0_rm.out392                    AGGTG-GA------GGTACTCGGTTCGACGCCCGTTAG--------AAAG
GCA_000004255.1_v.1.0_rm.out402                    AGGTG-AA------AGTATTGGGTTCGACGTCCGTTGG--------AAGA
GCA_000004255.1_v.1.0_rm.out408                    AGACG-AA------GATGTTGGGTTTGATGTTTATTGG--------AAAA
GCA_000004255.1_v.1.0_rm.out415                    GGTAC--------------TGGGTTCGACGCCCGTTG-G-------GAAG
GCA_000004255.1_v.1.0_rm.out424                    ------CAGGTGGAGGTACTGGGTTCGACGTCCGTTGG--------GAGA
GCA_000004255.1_v.1.0_rm.out434                    ------TAGGTGGATGTACAGGGTTCGACGCCAGTTGG--------GAGG
GCA_000004255.1_v.1.0_rm.out437                    --------CTTGGAGGTCACGGGTTCGATTCACGTTGG--------GAGG
GCA_000004255.1_v.1.0_rm.out450                    ------CAGGTGGAGATACTGGGTTCGACGCCCGTTGG--------GAGA
GCA_000004255.1_v.1.0_rm.out459                    --------------------------------------------------
GCA_000004255.1_v.1.0_rm.out463                    GGTAC--------------TGGGTTCGACGCCCGTCGGG--------AGG
GCA_000004255.1_v.1.0_rm.out469                    GGTAA-AA------AGTATTGGATTCGACGCTTATTGG--------AAGA
GCA_000004255.1_v.1.0_rm.out525                    ------CAGGTGGAGGTATTGGGTTCGACACCCGTTGG--------GAGG
GCA_000004255.1_v.1.0_rm.out543                    GGTAC--------------TGGGTTCGACGCCTTTTG-G-------GAGA
GCA_000004255.1_v.1.0_rm.out552                    ATGT-------G--------------------------------------
GCA_000004255.1_v.1.0_rm.out588                    ------CAGGTGGAGGTACTGGATTCGACGCCCGTTGG--------GAGG
GCA_000004255.1_v.1.0_rm.out599                    --------CTTGGAAGTCACGGGTTCGATTCACGTTGG--------GAGG
GCA_000004255.1_v.1.0_rm.out613                    AGGTC-GA------GGTGTTGGATTCAATGCCTATTAG--------AAGA
GCA_000004255.1_v.1.0_rm.out622                    -----------------CCCAGGTGGAGGTACTGTTGG--------GAGG
GCA_000004255.1_v.1.0_rm.out629                    AGATA-GA------GATATTGGGTTTGACGTTTGTTAG--------AAAA
GCA_000004255.1_v.1.0_rm.out630                    AGATA-GA------GATATTGGGTTTGACGTTTATTAG--------AAAA
GCA_000004255.1_v.1.0_rm.out651                    ----------TGGAGGTCACGGTTTCGATTCACGTTGG--------GAGA
GCA_000004255.1_v.1.0_rm.out652                    AAGT-------AGAAGTATTGGGTTCGACGCCCGTTGG--------AAGA
GCA_000004255.1_v.1.0_rm.out653                    --------CTTGGAAGTCACGGGTTCGATTCACGTTAG--------GAGG
GCA_000004255.1_v.1.0_rm.out662                    ------CAGGTGGAGGTATTGGGTTCGATGACCGTTGG--------GAGA
GCA_000004255.1_v.1.0_rm.out678                    --------CTTGGAGGTCATGGGTTCGATTCACGTTGG--------GAGG
GCA_000004255.1_v.1.0_rm.out687                    GGTAC--------------TGGGTTCTACGCTCTTTG-A-------AAAG
GCA_000004255.1_v.1.0_rm.out693                    TAGTG-GA------GGTGTTGGGTTCGATGCTCGTTGG--------GAAG
GCA_000004255.1_v.1.0_rm.out698                    ----------TGGAGGTCACGGGTTCGATTCACGTTGG--------GAGG
GCA_000004255.1_v.1.0_rm.out708                    ------CAGGTGGAGGTACTGGGTTCGACGTCCGTTTG--------GAGG
GCA_000004255.1_v.1.0_rm.out712                    --------------------------------------------------
GCA_000004255.1_v.1.0_rm.out713                    AGGTG-GA------GGTACTGGGTTCGACGCCCGTTAG--------GAGG
GCA_000004255.1_v.1.0_rm.out729                    --------------------------------------------------
GCA_000004255.1_v.1.0_rm.out740                    ------CAGGTGGAGGTACTGGATTTGATGCCCGTTGG--------GAGG
GCA_000004255.1_v.1.0_rm.out760                    GGTAT--------------TGAGTTCGACGCCTGTTGGA-------AGGG
GCA_000004255.1_v.1.0_rm.out770                    AAGT-------CGAGGTACTGGATTCAACGTCCGTTGG--------AAGG
GCA_000004255.1_v.1.0_rm.out774                    ------TAGGTGGAGCTACTGGGTTCGATGCGCGTTGG--------GAGG
GCA_000004255.1_v.1.0_rm.out791                    --------------------------------------------------
GCA_000004255.1_v.1.0_rm.out792                    GGTAT--------------TGGGTTCGACCTCCGTTG-G-------GAGG
GCA_000004255.1_v.1.0_rm.out827                    GGTAC--------------TGGATTCGACACCCGTTG-G-------GAGA
GCA_000004255.1_v.1.0_rm.out837                    ------CAGGTGGAGGTACTGGGTTTGACGCCCGTTGG--------GAGA
GCA_000004255.1_v.1.0_rm.out843                    AGGTA-GA------AATGTTGGATTCGACGCCTGTTGG--------GAGA
GCA_000004255.1_v.1.0_rm.out849                    AGGT-------GGAGATACTGGGTTCGACGCCCGTTGG--------GAGT
GCA_000004255.1_v.1.0_rm.out852                    AGGT-------GGTGGTATTGGGTTCGACGTCCATTGG--------GAGG
GCA_000004255.1_v.1.0_rm.out871                    AGAT-------AGAGGTACTGGGTTCGACGCCCGTTGG--------CAGA
GCA_000004255.1_v.1.0_rm.out888                    ----------TGGAAGTCACGGGTTCAATTCACATTGG--------GAGG
GCA_000004255.1_v.1.0_rm.out894                    --------------------------------CATTG-G-------GAGG
GCA_000004255.1_v.1.0_rm.out895                    --------------------------------------------------
GCA_000004255.1_v.1.0_rm.out906                    AGGTG-GT------CGTGTTAGATTTGACTTTCCTTGA--------AAG-
GCA_000004255.1_v.1.0_rm.out959                    AGTAC--------------TGGGTTCGACGCCTATTG-G-------AAAA
GCA_000004255.1_v.1.0_rm.out997                    GGTGC--------------AGGGTTCGACGCCCGTTG-G-------AAAG
GCA_000004255.1_v.1.0_rm.out1002                   ------CAGGTGGACATACTGGGTTCGACGCCCGTTAG--------GAGG
GCA_000004255.1_v.1.0_rm.out1005                   ------CAGGTAGAAGTACGGGATTCGACGCCCATTGG--------AAGG
GCA_000004255.1_v.1.0_rm.out1006                   GGTAC--------------TGGATTCGACGCATGTTG-G-------GAGA
GCA_000004255.1_v.1.0_rm.out1009                   CGC----------------------------CCGTTGG--------GAGG
GCA_000004255.1_v.1.0_rm.out1033                   ------CAGGTGAAGGTACTGGGTTCGACGCCCATTGG--------AAAA
GCA_000004255.1_v.1.0_rm.out1045                   TTTCCAAAAATGTAGAAATCTTGGAAATCACGGATTAG--------GAAG
GCA_000004255.1_v.1.0_rm.out1072                   ------CAGGTGGAGATATTGGGTTCGACGCCCGTTAG--------GAGG
GCA_000004255.1_v.1.0_rm.out1126                   ------------------------------------GG--------GAGG
GCA_000004255.1_v.1.0_rm.out1132                   AGGTA-AA------------------------------------------
GCA_000004255.1_v.1.0_rm.out1147                   ------CAGGTGGAGGTATTGGATTCGACGTCCGTTGG--------GAGG
GCA_000004255.1_v.1.0_rm.out1187                   ------TAGGTGGAGGTATTG-GGTTCGACGCCGTTGG--------GAGG
GCA_000004255.1_v.1.0_rm.out1200                   ----------TGGAGGTCACGGGTTCGATTCACGTTGG--------GAGG
GCA_000004255.1_v.1.0_rm.out1215                   GGTAC--------------TGGCTTTGACGCCCGTTG-G-------GAGA
GCA_000004255.1_v.1.0_rm.out1219                   AAGCGTGTTTTGGAGGTCACGGGTTCGATTCACGTTGG--------GAGG
GCA_000004255.1_v.1.0_rm.out1251                   ----------TGGAGGTCACGTGTTCAATTCACGTTGG--------GAGG
GCA_000004255.1_v.1.0_rm.out1254                   ----------TGGAGGTCACGGGATCGATTCACGTTGG--------GAGG
GCA_000004255.1_v.1.0_rm.out1276                   --------CTTGGAGGTCACGGGTTCGATTTACGTTGG--------GAGA
GCA_000004255.1_v.1.0_rm.out1287                   AGGTG-AA------GGTACTGAGTTCGACGTCCGTTGA--------GAGG
GCA_000004255.1_v.1.0_rm.out1300                   ------CAGGTGGAGATACTGGGCTCGACGCCCGTTGG--------GAGG
GCA_000004255.1_v.1.0_rm.out1305                   AAGCGTATTTTGGAGGTCACGGGTTCGATTCACGTTGG--------GAGG
GCA_000004255.1_v.1.0_rm.out1314                   AGGT-------GAAGGTACTGGGTTCAACGCCCGT---------------
GCA_000004255.1_v.1.0_rm.out1323                   ------CAGGTGGAGGTATTGAGTTCGACGCCCGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out13                  --------CTTGGAGGTCACGGGTTCGAGTCACGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out19                  GGTAC--------------TGGGTTCGACGTCCGTTA-G-------AAGG
GCA_000523005.1_Ahal_1.0_rm.out20                  ----------TGTAGGTCACAGGTTCGATTCGAGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out28                  GGTAC--------------TGGATTCGACGCCCGTTGAA--------G--
GCA_000523005.1_Ahal_1.0_rm.out41                  --------CTTGGAGATCACGGGTTCGATTCATGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out48                  GGTAC--------------TGGATTCGACGCTCGTTG-A-------TTGG
GCA_000523005.1_Ahal_1.0_rm.out79                  ------CAAGTGTAGGTACTGGGTTCGACGCCCGTTGG--------AAGG
GCA_000523005.1_Ahal_1.0_rm.out80                  GGTGA-TA------CTAGCTGGGTTCGACGTCTGTTGG--------AAAA
GCA_000523005.1_Ahal_1.0_rm.out94                  ------CAGGTGGAGGTACTGGGTTCGACGCTCATTGGGAGGGTCGGAGG
GCA_000523005.1_Ahal_1.0_rm.out104                 -----------------------TTCGATCCGTGTTAG--------AAAG
GCA_000523005.1_Ahal_1.0_rm.out105                 ----------TGGAGGTCACGGGTTCGATTCACGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out114                 ------CAGGTGGAGGTACTGGGTTCGACGCCCGTTGG--------AAGG
GCA_000523005.1_Ahal_1.0_rm.out117                 ------------------------------CATTTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out121                 AGGTA-AA------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out157                 TGTAT--------------TGGGTTCGACGTCCGTTTGA--------AGG
GCA_000523005.1_Ahal_1.0_rm.out159                 ------CAAGTGGAGGTATTGGGTTCGATGCCCGTTGG--------GAGA
GCA_000523005.1_Ahal_1.0_rm.out160                 ------------------------------------GG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out176                 ------CAGATAGAGGTACTGGGTTCGACGCCCGTTGA--------GAGA
GCA_000523005.1_Ahal_1.0_rm.out182                 AGGTG-GA------AGTGTTCGGTTTAACGCCCGTTGG--------AAGG
GCA_000523005.1_Ahal_1.0_rm.out188                 GGTAC--------------TAAGTTCAACGCCCATTG-G-------TAAA
GCA_000523005.1_Ahal_1.0_rm.out192                 ------CCAGTGGATGTATTGGGTTCGACGCCCGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out194                 --------CTTGGAGGTCACGGGTTTGATTCACGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out198                 ------TAGGTGGAAGTACTGGGTTCGACACCCGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out201                 AGGT-------GGAGGTACTGGGTTCGACGCCCATTGG--------AAAA
GCA_000523005.1_Ahal_1.0_rm.out203                 GGTAC--------------TGGGTTCGACGCCCGTTG-G-------GAAA
GCA_000523005.1_Ahal_1.0_rm.out210                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out211                 ------CAGGTGGAGGTACTGGGTTCGACGCCCATTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out217                 AGGTA-GA------GGTATTGGGTTCGACGTCCGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out223                 ----G-GA------GGTACCGGGTTCGACGCCCGTTGG--------AGAG
GCA_000523005.1_Ahal_1.0_rm.out236                 ----------TGGAGGTCACGGGTTCGATTCACGTTAG--------GAAG
GCA_000523005.1_Ahal_1.0_rm.out251                 ------CAGGTAGAGGTATTGGGTTCGACGCCCGTTGG--------AAGG
GCA_000523005.1_Ahal_1.0_rm.out252                 AGGT-------GGAGGTACTGGGTTCGACGCCCGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out259                 ------TAGGTTGAGGTATTGGGTTCGACGCCCGTCGG--------AAAG
GCA_000523005.1_Ahal_1.0_rm.out267                 ------CAGGTGGAGGTACTAGGTTCGACGCCCGTTGG--------GAGT
GCA_000523005.1_Ahal_1.0_rm.out282                 AGGT-------GGAGGTACTGGATTCGACGTCCGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out284                 ------CAGATGGAGGTATTGGGTTCGATGCCCGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out291                 --------CTTGGAGGTCACGGGTTCGATTCATGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out305                 AAGT-------GGA------GGTTTCGACACCCGTTGG--------AAAG
GCA_000523005.1_Ahal_1.0_rm.out323                 ----------TGGAGGTCACGAGTTCAATTCACGTTGG--------AAGG
GCA_000523005.1_Ahal_1.0_rm.out332                 ------CAGGTGGAGGTACTGGGTTCGACACCCGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out335                 AAGTG-GA------GGTGTTGGCTTCGACG-CCGTTGA--------GAAT
GCA_000523005.1_Ahal_1.0_rm.out339                 AGGT-------GGAGGTACTGGGTTCGACGCCCGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out344                 ----------TGGTGGTTACGGGTGCGATTCGCATTGG--------GAAG
GCA_000523005.1_Ahal_1.0_rm.out349                 ------CAGGAGGAAGTACTGGGTTCGACGCCCGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out365                 GGTAC--------------TGAGTTCGATGCCCGTTGAA-------AATA
GCA_000523005.1_Ahal_1.0_rm.out373                 AGGTG-AA------GGTATTGAGTTCGACGCCTATTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out379                 AGGT-------AGAGGTATTGGGTTCGACACCTGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out399                 AAGT-------AGAAGTACTGGGTTCGACGTCCGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out413                 ------CAAGTGGAGGTACTGGGTTCGACTCCCATTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out451                 GGTAT--------------TGGGTTCGACGTCCGTTG-G-------AAGA
GCA_000523005.1_Ahal_1.0_rm.out452                 AAGTG-GA------GATGTTGGATTCGACGTCTGTTGG--------GAGA
GCA_000523005.1_Ahal_1.0_rm.out459                 ----------------------GTTTGATCCACATTAG--------AAAG
GCA_000523005.1_Ahal_1.0_rm.out460                 --------CTTAGAGGTCACGGGTTCGATTTACGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out491                 --------CTTGGAGGTCACGGGTTTGATTCACGTTGG--------GAGA
GCA_000523005.1_Ahal_1.0_rm.out504                 ------CAGGTAGAGGTACTGGGTTCGACGCCCGTTGG--------GAAG
GCA_000523005.1_Ahal_1.0_rm.out510                 ----GAACCTTGGAGGTCACGGGTTCGATTCACGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out511                 -----------------------------------------------GAA
GCA_000523005.1_Ahal_1.0_rm.out520                 GATAC--------------TGGATTCGAAGCCCGTTG-G-------GAGA
GCA_000523005.1_Ahal_1.0_rm.out521                 ------CAGGTGGAGGTACTGGGTTCGACGCCCGTTGG--------TAGG
GCA_000523005.1_Ahal_1.0_rm.out524                 CAGT-------GGAAGTATTGGGTTCGACTCCCGTTGG--------AAGA
GCA_000523005.1_Ahal_1.0_rm.out542                 ------CAGGCGGAGATACTGGATTCGACACCCGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out543                 ------CAGGTGGAGGTACTGGGTTCGACGCCCGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out550                 ------CAGGTGGAAGTACTGGGTTCGACGCCCGTTGG--------GAGA
GCA_000523005.1_Ahal_1.0_rm.out551                 ------CAGATGGAGGTATTGGATTCGACGTCCGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out561                 ------CAGGTGGAGGTACTGGATTCGACGCCCGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out565                 AGGT-------GGAGGTACTGGGTTCGACGTCCGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out566                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out577                 GGTAC--------------TGGATTCGACACTTGTTG-G-------AAAT
GCA_000523005.1_Ahal_1.0_rm.out584                 AGGTG-GAGGTA-----TTGGAT-TCGACGCCCATTGG--------AAAG
GCA_000523005.1_Ahal_1.0_rm.out588                 ------CAAGTAGAGGTACTGGGTTCGACGTCCGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out589                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out591                 AGGT-------AGAGGTACTGGGTTCGACGTCCGTTGG--------GAGA
GCA_000523005.1_Ahal_1.0_rm.out595                 ------TAGATGGAGGTACTGAGTTCGACGCCCGTTGG--------AAGG
GCA_000523005.1_Ahal_1.0_rm.out600                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out601                 AGGTA-GA------GGTATTGGGTTCGACACCCGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out604                 ------CAGGTGGAGGTACTGGGTTCGACGCCCGTTGG--------GAGA
GCA_000523005.1_Ahal_1.0_rm.out613                 AGTAC--------------TGGGTTAGACGCCCGTTG-G-------GAGG
GCA_000523005.1_Ahal_1.0_rm.out617                 GTGGAGGTA---------CTAGGTTCGACGTCCGTTG-A-------GAGA
GCA_000523005.1_Ahal_1.0_rm.out618                 AGGT-------GGAAGTACTGGGTTCGACGCA------------------
GCA_000523005.1_Ahal_1.0_rm.out621                 ------CAGGTGGAGGTACTGGATTCGACGCCCGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out622                 AAGT-------AGAGGTACTGGGTTCGACGCCCGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out631                 -------------------------------------------------A
GCA_000523005.1_Ahal_1.0_rm.out632                 AAGT-------GGAAGTATTGAGTTCGACGTCCGTTGG--------G---
GCA_000523005.1_Ahal_1.0_rm.out633                 AAGT-------GGAAGTATTGAGTTCGACGTCCGTTGG------------
GCA_000523005.1_Ahal_1.0_rm.out652                 AAGT-------GGAGGTATTGGGTTCGACGCCCGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out668                 ----------TGGAGGTCACGGGTTCGATTTACGTTAG--------GAAG
GCA_000523005.1_Ahal_1.0_rm.out672                 ----------TGGAGGTCACGAGTTCGATTCACGTTGG--------GAGA
GCA_000523005.1_Ahal_1.0_rm.out685                 AGGT-------AGAGGTATTGAGTTCGACGTCCGTTGG--------AATG
GCA_000523005.1_Ahal_1.0_rm.out695                 AGGTG-GA------GATACTGGGTTCGACGCCCGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out716                 AGGT-------GGAGGTACTGGGTTCGACGTCCGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out726                 --------CTTGGAGGTCATGGGTTCGATTCACGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out729                 GGTAC--------------TGGGTTCGACGTCCGTTG-G-------GAGA
GCA_000523005.1_Ahal_1.0_rm.out736                 AGTAC--------------TGAGTTCGACGCCCGTTG-A-------AAGG
GCA_000523005.1_Ahal_1.0_rm.out750                 AGAT-------GGAAGTACTGGGTTCGATGCCCGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out758                 ------------------------------CACGTTGG--------GAAG
GCA_000523005.1_Ahal_1.0_rm.out775                 AGGT-------GGAGGTACTGGGTTCGACGCCCTTTGG--------AAGG
GCA_000523005.1_Ahal_1.0_rm.out776                 ------CAAGTGGAGGTACTGGATTCGACGCCCGTTGG--------GAGT
GCA_000523005.1_Ahal_1.0_rm.out777                 ------CAGGTGGAGGTATTGGGTTCGATGCCCGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out780                 ------CAGGTGGAGGTACTGGGTTCGACATCCGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out825                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out832                 ----------TGGAAGTCACGGGTTCGATTCACGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out849                 AGGT-------GGAGGTACTGGGTTCGACGCCTGTTGG--------GAAG
GCA_000523005.1_Ahal_1.0_rm.out852                 TTCTG-GA------GGTACTGGGTTCAACCCTCGTTGG--------GAAA
GCA_000523005.1_Ahal_1.0_rm.out855                 ------CAGGTGGAAATACTGGGTTCGACACCCGTTGG--------GAAA
GCA_000523005.1_Ahal_1.0_rm.out865                 ---------TTGGAAGTCACGGGTTCGATTCACGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out868                 AGGTA-GA------AATATTGGGTTAGATGTCCGTTGG--------GAGA
GCA_000523005.1_Ahal_1.0_rm.out877                 ------------------TTAGAGGTCACGAGTTTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out886                 ------CAGGTGGAGATACTGGATTCGACGTCCGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out897                 AGGT-------AAAAG----------------------------------
GCA_000523005.1_Ahal_1.0_rm.out902                 ----------TGGAGGTCACGGGTTCGATTCACGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out908                 GGTAC--------------TGGGTTCGACGCCCGTTG-G-------GAGA
GCA_000523005.1_Ahal_1.0_rm.out909                 TGTGT--------------TGGGTTCGACATCCGTTG-G-------AAGA
GCA_000523005.1_Ahal_1.0_rm.out937                 ----------TGGTGGTTACGGGTGCGATTCACATTGG--------GAAG
GCA_000523005.1_Ahal_1.0_rm.out949                 GGTAC--------------TGAGTTCGAGGCCCGTTG-G-------GAGA
GCA_000523005.1_Ahal_1.0_rm.out954                 AGGTA-AA------AGTAGTAGGTTTGACGTCCGTTGG--------GAAG
GCA_000523005.1_Ahal_1.0_rm.out956                 GGTAA--------------TGAGTTCGACGTCCGTTG-G-------GAGA
GCA_000523005.1_Ahal_1.0_rm.out959                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out964                 ------CAGGTGGAGGTACTGTGTTCGACACCCGTTGG--------AAGG
GCA_000523005.1_Ahal_1.0_rm.out965                 ------TAGGTGGAGGTACTGGGTTCAACGGCCGTTGC--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out987                 ---------------------------GGGGCCGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out1037                GGTAC--------------TAGATTCGACGTCTGTTG-G-------GAGG
GCA_000523005.1_Ahal_1.0_rm.out1040                --------------------GGGTTCGATTCGAGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out1047                AGGT-------GGATGTACAGGGTTCGACGCCAGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out1059                ------CAGGTGAAGATACTGAGTTCGACGTCCGTTGG--------GAGA
GCA_000523005.1_Ahal_1.0_rm.out1075                ------TAGGTAGAGGTACTGGGTTCGACGCCCGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out1084                AGGT-------AGAGATATTAGGTTCGACGCCCGTCGG--------GA--
GCA_000523005.1_Ahal_1.0_rm.out1085                AGGT-------GGAGGTACTGGGTTCGA----------------------
GCA_000523005.1_Ahal_1.0_rm.out1096                ------CAGGTGGAGGTACTGGGTTCGACGCCCGTTGG--------GAAA
GCA_000523005.1_Ahal_1.0_rm.out1100                GATAC--------------TGGATTCGACGGCCGTTG-G-------AAGG
GCA_000523005.1_Ahal_1.0_rm.out1101                ------CAAGTAAAGGTACTGGATTCGACGCCTGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out1132                ----------TAGAGGTCACGGATTCGATTCACGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out1150                CGGAA-AA------TTTCTCAGGTGTTACGCATGTTTG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out1195                ------CATGTGGAGGTACTGGGTTCGACGTCCGTTGG--------GAGA
GCA_000523005.1_Ahal_1.0_rm.out1196                ------CAGGTAGAGGTACTGGGTTCGACGCCCGTTGG--------AAGA
GCA_000523005.1_Ahal_1.0_rm.out1198                GGTAT--------------TGAATTCGACGCCCGTTG-G-------GAGA
GCA_000523005.1_Ahal_1.0_rm.out1199                AGGTA-GATATA-----CTGGGT-TCGACGTCCGTGAA--------AAAG
GCA_000523005.1_Ahal_1.0_rm.out1200                --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1210                AGGTG-GA------GGTATTGGATTCGACGCCCGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out1212                --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1231                --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1239                --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1240                AGGT-------GGAGGTACTGGGTTCGACGCCCGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out1254                GATAC--------------TGGTTTCGACACCCGTTG-T-------AAAT
GCA_000523005.1_Ahal_1.0_rm.out1260                --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1289                ------CAGGTGGAGGTACTGGGTTCGACGCCCGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out1294                ------CAGGCGGAGGTACTGGGTTCGACGCCCGTTGG--------ACGG
GCA_000523005.1_Ahal_1.0_rm.out1302                ---------------------GGTTCGATTCATGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out1316                AGGT-------GGAGGTACTGGGTTCGACGCCCATTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out1317                ----------TGGAGATCACGGGTTCGATCCACGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out1318                AGGT-------GGAGGTACTAGGTTCGACGCCCGTTGG--------AAGG
GCA_000523005.1_Ahal_1.0_rm.out1319                ------CAGGTGGAGGTACTGGGTTCGACGCCCGTTGA--------AAGG
GCA_000523005.1_Ahal_1.0_rm.out1321                ATGT-------GGAGGTATTAGGTTTGACGCATGTTAG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out1341                AGGT-------GGAGGTACTGAGTTCGACGTCCGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out1348                ------CAGGTAGAAGTACTGAGTTCGACGTCCGTTGG--------GAGT
GCA_000523005.1_Ahal_1.0_rm.out1349                ------CAGGTAGAGGTACTGAGTTCGACGTCCGTTGG--------GAGT
GCA_000523005.1_Ahal_1.0_rm.out1370                --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1371                AGGT-------GGAGATACTGGGTTCGATTCCCGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out1378                ------CAGGTGGAGGTACTGGATTCGACGCCCGTTTG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out1404                AGGT-------GGAGGTACTGGGTTCGACGCCCGTTGG--------GAAG
GCA_000523005.1_Ahal_1.0_rm.out1409                AGGTG-AAGATA-----TTGGAT-TCGACTCTCATTGG--------AAAG
GCA_000523005.1_Ahal_1.0_rm.out1417                ------CAGGTGGAGATACTGGATTCGACGTCCGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out1419                GGTGT--------------TGGGTTCGACGTCCGTTG-G-------GAGA
GCA_000523005.1_Ahal_1.0_rm.out1420                AGGT-------GGAAGTACTGGGTTCGACGCTCGTTAG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out1437                AGGT-------AGAGGTACTGGGTTCGACGCCCGTTGG--------AAGG
GCA_000523005.1_Ahal_1.0_rm.out1442                AGGT-------GGAGATATTGGGTTCGACGCTCGTTGG--------AAGG
GCA_000523005.1_Ahal_1.0_rm.out1448                AGGT-------GGAGGTACTGGGTTCGACGTTCGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out1451                ------CAGGTGGAAGTACTGGGTTCGACGCCCGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out1457                ATGT-------GGAAGTACTGGGTTTGTCGTCCATTGG--------GAAG
GCA_000523005.1_Ahal_1.0_rm.out1470                ------CAGGTGGAGGTACTGGGTTCGACGCTCGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out1472                AGGTA-GA------AGTGATGGATTCGACGTCCATTGG--------GAAT
GCA_000523005.1_Ahal_1.0_rm.out1478                --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1481                ------CAGGTGGAGGTACTGGGTTCGACGCCCGTTGG--------AAGG
GCA_000523005.1_Ahal_1.0_rm.out1516                ----------TGGAGGTCACGGGTTCGATTCACGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out1582                ----------TGGAGGTCACGGGTTCGATTCACGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out1595                ----------TGGAGGTCACGGGTTCGATTCACGTTGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out1660                --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1673                --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1677                --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1686                --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1713                --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1853                GGTAC--------------TGTGTTCGACGCCCGTTA-G-------GAGA
GCA_000523005.1_Ahal_1.0_rm.out1854                GGTAC--------------TGTGTTCGACGCCCGTTA-G-------GAGA
GCA_000523005.1_Ahal_1.0_rm.out1860                GGTAC--------------TGGGTTCGACGTCTGTTG-A-------GAGG
GCA_000523005.1_Ahal_1.0_rm.out1868                ------CAGGTGGATGTACAGGGTTCGACGCCCGTCGG--------GAGG
GCA_000523005.1_Ahal_1.0_rm.out1869                ----------TGGTGGTTACGGGTGCGATTCGCATTGG--------GAAG
GCA_000523005.1_Ahal_1.0_rm.out1887                ------CAGGTGGAAGTACTGGGTTCGACACCCGTTGA--------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out3     GGTAC--------------TGGGTTCGACGCCCGTTGGA--------GGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out11    -------------------TGGGTTCGACGCCCGTTGG--------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out20    ------CAGGTAGAGGTACTGGGTTCGACGCTCGTTGA--------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out23    ------CAGGTGGAGGTACTGGGTTCGACGCCCGTTGG--------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out28    --------CTTGGAGGTCACGGGTTCGATTCACGTTCG--------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out29    --------CTTGGAGGTCACGGGTTCGATTCACGTTGG--------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out44    GGTAC--------------TGGGTTCGACGCCGTTGG-G-------AAAG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out57    AGGTA-GA------GGTACTGGATTCGACGCCCGTTGG--------AAGA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out102   ------CAGGTGGAGGTACTGGATTCGACGCCCGTTGG--------GAGA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out104   CTC----------------------------TGGGTTC--------GACG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out115   GGTAC-TG------GGTTCGACGCCCGTTGCCCGTTGA--------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out117   ------CAGGTGGAGGTACTGGGTTCAACGTCCGTTGG--------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out143   ----------------------GTTCGATACGCAGTGG--------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out183   ------CAGGTGGAGGTACTGGGTTCGACGCCCGTTAG--------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out227   GGTAC--------------TGGGTTCGATGCCCATTG-G-------AAGA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out231   GGTAC--------------TGGGTTCGACTCCCGTTG-G-------AAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out232   GGTAT-------------TGGGGTTCGACGTCCGTTG-G-------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out254   --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out280   AGGTA-GA------GGTACTGAGTTCGACGTCCGTTGG--------AAAG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out283   CAC----------------------------CCGTTGG--------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out299   ------CAGGTAGAGGTACTGAGTTCGACGCCTGTTGA--------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out317   GGTAT--------------TGGGTTCGACGCCCGTTG-G-------AAGA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out343   --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out352   AGGT-------GGAGGTACTGGGTTCGACGCCCGTTGG--------GAGA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out353   --GTG-GA------GGTACTGGGTTCGGCGCTCGTTGG--------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out361   --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out362   ------CAGGTGGAGATATTGGGTTCGACGTCCGTTGG--------GAAG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out387   -----------------------------------------------GAA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out414   -----------------------------------------------GAA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out456   GGTAC--------------TGAGTTCGACGCCCGTTG-G-------GAGA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out466   ------CAGGTGGAGGTACTGGGTTCGACGCCCGTTGG--------GAGT
GCA_902850255.1_pseudohap_a_tetraploid_rm.out469   ------TAGGTGGAGGTACTGGGTTCGACGCTCGTTGG--------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out478   AGGT-------GGAAGTACTGGGTTCGACACCCGTTAG--------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out479   ----------------------------------TTGG--------GAGA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out494   ------CAGGTGGAGATACTGGGTTCGACGCCCGTTTG--------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out497   ------CAGGTGGAGGTACTGGGTTCGACGCCCGTTGG--------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out498   --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out512   GGTAC--------------TAAGTTCAACGCCCATTG-G-------TAGA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out524   AGGT-------GGAGGTACTGGGTTCGATGCCCGTTGG--------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out557   GGTAA--------------TGGGTTCGACGCCCGCTG-A-------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out562   -------------------------------ACGTTGG--------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out563   ------CAGGAAGAGGTACTGGATTCGACGCCCGTTGG--------GAGA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out566   GGTACTAGGTTGGAGGTACTAGGTTCGACGCCCGTTGT--------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out582   ------CAGGTGGAGGTACTGGGTTCGACGCCCGTTGG--------GAGT
GCA_902850255.1_pseudohap_a_tetraploid_rm.out594   AGGT-------GGAAGTACTGGGTTCGACGCCCGT---------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out597   AGGT-------GGAGGTACTGGATTCGACGC-------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out602   --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out604   AGGTA-GA------GATACTGGGTTCGATGCCCCTTGA--------GAGA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out619   GGTAC--------------TGGATTTGACGTTCGTTG-G-------AAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out655   ----------TGGAGGTCACATGTTCTATTCACGTTGG--------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out657   ----------------TACTGTGTTCGACGCCTGTTGG--------GAAG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out664   ----------TGGAGGTCACGGGTTCGATTCACGTTGG--------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out666   ------CAAGTGGAGGTACTGGGTTCGACGCCTATTGG--------AAGA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out674   --------CTTGGAGGTCACGGGTTCGATTCACGTTGG--------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out675   ------CAGGTAGAGGTACTGGGTTCGACGCCCGTTGG--------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out683   AAGTA-GA------GGTGTTGGGTTCGACGC-------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out697   GGTAT-------------TGGGGTTCGACGTCCGTTG-G-------GAGA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out703   GGTAC--------------TAGGTTCGACGCCCGTTG-G-------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out709   ------CAGGTGCAGGTACTGGGTTCGACGCCCGTTGG--------GAGA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out726   AGGT-------AGCGATACTGGGTTCGACGTCCGTTGG--------GAGA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out736   ------CAGGTGGAGGTACTGGGTTCGACGCCCATTGG--------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out742   ------CAGGTGGAGGTATTGGGTTCGACGTCCGTTGG--------GAAG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out745   ------CAGGTGGAGGTACTGGGTTCGACGCCCGTTGG--------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out748   ------CAAGTGGATGTACTAGGTTCGACGCCCGTTGG--------AAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out765   ------CAGGTGGAGGTACTGGGTTCGACGCCAGTTGG--------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out767   ------------GAGGTCACGGGTTCGATTCACGTTAG--------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out774   ------CAAGTGAAGGTACTAGGTTCGACGTCCGTTGG--------AAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out778   ---------------------GGTGGGATTCGCGTTGG--------GAAT
GCA_902850255.1_pseudohap_a_tetraploid_rm.out781   ------CAGGTGGAGGTACTGGGTTCGACGCCCGTTGG--------GACG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out784   ------CAGGTGAAGGTACTGGGTTCGACGCCCGTTGG--------AAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out807   ------TAGGTGGAGATACTGGGTTCGACGTCCGTTGG--------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out819   GATAC--------------TGGTTTCGACGCCCGTTA-G-------AAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out840   ------CAGGTAGAGGTACTGAGTTCGACGCCTGTTGA--------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out843   ------CAGGTGGAGGTACTAGGTTCAACGTCCGTTGG--------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out845   ------CAGGTAGAGGTACTGGGTTCGATGCCCGTTGG--------GAAG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out865   --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out886   --------CTTGGAGGTCACGGGTTCGATTCACGTTGG--------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out911   ------TAGATGGAGGTACTGGGTTCGACGCCCGTTGG--------GAGA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out926   CCC----------------------------AGGTGGA--------GGTA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out933   ------CAGGTGGAGGTACTGGGTTCGACGCCCGTTGG--------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out942   ---------------GTCACGGGTTCGATTCACGTTGG--------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out948   GGTAC--------------TGAGTTCGACGCCCGTTGGG-------A-GG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out950   ------CAGGTGGAGGTACTGGGTTCGACGCCTGTTGG--------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out953   GGTAC--------------TGGGTTCGACGCCCCTTGGA--------AAG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out968   AGGT-------GGAGGTACTAAGTTCAACGCCCATTGG--------TAGA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out970   ------CAGGTGGAGGTATTGGGTTCGAGACCCGTTGG--------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out976   AGGTG-AA------AGTATTGGGTTCGACGTCCGTTGG--------AAGA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out993   ----------TGGTGGTTACGGGTGCGATTCGCATTGG--------GAAG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1001  ------CAGGTGGAGGTACTGAGTTCGACGCCCGTTGG--------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1006  --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1026  GGTGT--------------TGGATTCGACGCCTGTTG-G-------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1030  --------CTTGGAGGTCACGGGTTCAATTCACGTTGG--------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1050  ------CAGGTGGAGGTACTGGGTTCGACGCCCGTTGG--------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1060  ------CAAGTGGAGG--CTGGGTTCGACGCCCGTTGG--------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1083  GGTAC--------------TGGATTCGACGCCCGTTA-A-------GAAG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1090  ------CAGGTGGAGGTACTGGGTTCGACGCCCGTTGG--------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1098  ------CAGGTGGAGGTACTGGGTTCGACGCCCGTTGG--------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1101  ---------TTGGAGGTCACGGGTTTGATTCACGTTGG--------GAAG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1108  ----------------------------------------------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1124  ------------------------------------GG--------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1136  AGGTG-GA------TGCACTGGGTTCGACGCCCGTTGG--------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1155  AGGTG-AG------GGTGTTGGGTTCAACGCTCGTCGG--------GAGA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1156  ------CAGGTGGAGGTACTGAGTTCGACGCCCGTTGG--------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1163  AGGTA-GAGATA-----TTGGAT-TCGACGTTCATTGG--------AAAG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1164  AGTAC--------------TGGATTCAACGGCCGTTG-G-------GAGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1208  GGTGC--------------TGGGTTCGACGCCCGTTG-G-------GAGG

GCA_000001735.2_TAIR10.1_rm.out0                   AATATTTTTA------ATTTGGTGTGG-GTTC------------------
GCA_000001735.2_TAIR10.1_rm.out7                   GATCTTTTTT------CAAAAGGAGAT-GAATT--T--AACCTGGTGTGG
GCA_000001735.2_TAIR10.1_rm.out11                  GATCTCTTCT------CCAAAAAAATA-AATTT--A--ACATGATGTAGA
GCA_000001735.2_TAIR10.1_rm.out12                  GATCTCTTCTCGA------AAGGAGAT-GAATT--T--AACTTGGTGTGA
GCA_000001735.2_TAIR10.1_rm.out16                  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out18                  GATTTATTTT------CTAAAAAAGAT-GAATT--T--AACTTAATATGG
GCA_000001735.2_TAIR10.1_rm.out19                  GACCACTTTTCTA------AAATAGAT-GAATT--T--AACCTGATGTGG
GCA_000001735.2_TAIR10.1_rm.out25                  GATCTCTT--C----TCTAAAAGAGAT-GAATT--T--AACCTGGTGAGG
GCA_000001735.2_TAIR10.1_rm.out33                  GATCTTTTTA------TCTGGTTAGGA-TTCTG--C--CTCTAGAAGATG
GCA_000001735.2_TAIR10.1_rm.out34                  GATCTCTTCTCTA------AAAGAGAT-GAATT--T--AACCTGGTGTAG
GCA_000001735.2_TAIR10.1_rm.out35                  GATCTTTT--C----TCCAAAAAAGAT-GATTT--T--AATCTGGTGT-G
GCA_000001735.2_TAIR10.1_rm.out36                  GATCTTTTGT------TTTAAAAAGAT-AAATT--T--AATCTGTTATGG
GCA_000001735.2_TAIR10.1_rm.out55                  --------------------------------------AATCTGGTGT-G
GCA_000001735.2_TAIR10.1_rm.out56                  AATCTCTTGTTCA------AAAGAGAT-GAATT--T--AACCTTGTGTAA
GCA_000001735.2_TAIR10.1_rm.out61                  GATCTCTTCTCCA------AAGGAGAT-AAATT--G--AACCTGATGTAG
GCA_000001735.2_TAIR10.1_rm.out65                  GATTTCTTCT------CCAAAAAAGTT-AAATT--T--AATTGAATATGG
GCA_000001735.2_TAIR10.1_rm.out68                  AATCTCTTTT------CCATAAAAGAT-GAATT--T--AACCGAGTGT--
GCA_000001735.2_TAIR10.1_rm.out70                  GATCTCTTTT------CTAAAGGAGAT-GAATT--T--AACCTGGTGTGG
GCA_000001735.2_TAIR10.1_rm.out73                  TATTTCTTAA------CAAAAAAT----GAATT--T--AACTTTTGGTGT
GCA_000001735.2_TAIR10.1_rm.out77                  GATCTCTTCT------CCAAAAAAATG-AATTT-----------------
GCA_000001735.2_TAIR10.1_rm.out81                  AATTTAAGTT------GGTGTTGATCG-CATCT--C--TAAGAGATATA-
GCA_000001735.2_TAIR10.1_rm.out85                  GATCTTTTCTCCA------AAAAAGAT-GAATT--T--AACATGGTGTGG
GCA_000001735.2_TAIR10.1_rm.out91                  AAGATTTTT------TTAAAAGTAGAT-GAATT--T--AATTTGGTGTGA
GCA_000001735.2_TAIR10.1_rm.out98                  AATCTCTTC------TCCAATAAAGAT-TAATT--T--AACATAGTTT--
GCA_000001735.2_TAIR10.1_rm.out103                 AAAAAAATCT------TTAAAGTAGAT-AAATT--T--AATATGGTGTCA
GCA_000001735.2_TAIR10.1_rm.out110                 GATCTCTTCT------CCG-AAAAAGAAGAA-------------------
GCA_000001735.2_TAIR10.1_rm.out116                 AATCTTTATG------TGTGGATCTCG-CCTCT--A--GAAAA-------
GCA_000001735.2_TAIR10.1_rm.out119                 ATTTTTTTCT------TTA-AGAAAGATGAATT--T--AATCTGGTGTAA
GCA_000001735.2_TAIR10.1_rm.out126                 TATCTTTTTT------TCCAAAGGAGA-TGAAT--T--TAACCTTTTCGG
GCA_000001735.2_TAIR10.1_rm.out137                 AAACTATTC------TCCAAAAAATAT-GAATT--T--AACCTGGTAT-G
GCA_000001735.2_TAIR10.1_rm.out143                 -----------------CAAAAAAGAT-GAATT--T--AACCTTATGT-A
GCA_000001735.2_TAIR10.1_rm.out149                 GATCTCTTCT------TCAAAAAAGAT-GAATT--T--AACCT-------
GCA_000001735.2_TAIR10.1_rm.out155                 TGAGAGATC------TCTTC-TCCAAA-GGAAA--T--AAATTTAATATG
GCA_000001735.2_TAIR10.1_rm.out158                 GATTTCTTTT------TCAAAGGAGAT-GAATC--T--AAAATGGTGT-G
GCA_000001735.2_TAIR10.1_rm.out175                 ----------------------GAGAT-GAATT--T--AACCTGGTGT-A
GCA_000001735.2_TAIR10.1_rm.out177                 -------------------------------------------GGTGTAA
GCA_000001735.2_TAIR10.1_rm.out179                 GATCTTTTCT------CCAAAGGAGAT-TAATT--T--AAATCCCGCCTC
GCA_000001735.2_TAIR10.1_rm.out181                 --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out187                 AATGTTGTA------TTTGA-GGAGAT-AAATT--T--AACTTGGTGTGG
GCA_000001735.2_TAIR10.1_rm.out216                 AATCCGTTT------TCCAAATATGAT-GAATT--T--AATAATTTGTTG
GCA_000001735.2_TAIR10.1_rm.out218                 ----TTTCTTT----TTTAAAGGAGAT-GAATT--T--AATTCGGTGT-G
GCA_000001735.2_TAIR10.1_rm.out223                 ----------------------------GAATT--T--AATCTGGTGTGA
GCA_000001735.2_TAIR10.1_rm.out225                 ACATCTATTT------TCCAAAAAAA---CAAT--T--AACCTGATGTGA
GCA_000001735.2_TAIR10.1_rm.out228                 AATCTTTTTC------TTAAAAGAGAT-GAATT--T--AA----------
GCA_000001735.2_TAIR10.1_rm.out229                 GATTTATTCT------TTT-AATGAGATGAATT--T--AATTTGGTGTGA
GCA_000001735.2_TAIR10.1_rm.out231                 GATCTCTTCT------TCAAAAGAGAT-GAATT--A--ACTCCTGCTTCG
GCA_000001735.2_TAIR10.1_rm.out247                 AT--------------------------AAATT--T--AATTTAGTATAG
GCA_000001735.2_TAIR10.1_rm.out257                 GATCTCTT--C----TCCAAAAGAAAT-GAATT--T--AACCTGGTGT-G
GCA_000001735.2_TAIR10.1_rm.out261                 --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out263                 GATTTTTTCT------CCT-AAAAAGATGAATT--T--AACTTGGTGTAG
GCA_000001735.2_TAIR10.1_rm.out264                 ----------------------------GAATT--T--AATCTGGTATAG
GCA_000001735.2_TAIR10.1_rm.out265                 AATTTTTTCT------CCAAAGAAGAT-GAAT---------ATTGTGTGG
GCA_000001735.2_TAIR10.1_rm.out266                 TATCTCTTTT------CCA-AAAGAGTTGAATT--T--AACCTGATGTAG
GCA_000001735.2_TAIR10.1_rm.out281                 CATTTGAAGG------AGATGAATTTA-AC----------------CTAG
GCA_000001735.2_TAIR10.1_rm.out283                 GATTTCTTCTCCA------AAGAAGAT-GAATT--T--AATCTGGTTTGT
GCA_000001735.2_TAIR10.1_rm.out286                 AATCTTTTTT------TCA--AAAGAT-GAATT--T--AACCCGATATAA
GCA_000001735.2_TAIR10.1_rm.out288                 AATCTCTTC------TTCAA-AAAAAT-AAATT--T--AACCTGCTGTGG
GCA_000001735.2_TAIR10.1_rm.out310                 GATCTCCGCT------CCAAAGTAGAT-GAATT--C--AACATGGTGTGG
GCA_000001735.2_TAIR10.1_rm.out313                 GATCTTCT--------CCAAAAAAAAT-GAATT--T--AATCTGGTGT-G
GCA_000001735.2_TAIR10.1_rm.out315                 GATCTCTTCTCTA------ACGGAAAT-GAATT--T--AACCTGATGCGG
GCA_000001735.2_TAIR10.1_rm.out319                 --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out322                 GATCTCTTTTCCA------AAGAAGAT-GAATT-------TCTGGTATGG
GCA_000001735.2_TAIR10.1_rm.out327                 GATCTCTTCT------CCAAAGGAGAT-GAATT--T--ATCCTGGTATGG
GCA_000001735.2_TAIR10.1_rm.out332                 GATCTCTTCTCCA------CAGGAGAT-GAATT--T--AACCTGTTGTGG
GCA_000001735.2_TAIR10.1_rm.out341                 AATTTCTTAT------GAATTTAAC-------------------------
GCA_000001735.2_TAIR10.1_rm.out344                 GATCTTTTCT------CCA-AATGAGATGAATT--T--AATCTAGTGT--
GCA_000001735.2_TAIR10.1_rm.out363                 GATTTTTTCT------CCTAAGGAAAT-AAATT--T--AATTTGATGTGA
GCA_000001735.2_TAIR10.1_rm.out364                 --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out365                 GATTTTTTC------TCTAAATGACAT-GAATT--T--AACTTCATGT-A
GCA_000001735.2_TAIR10.1_rm.out376                 GATCTCTTCT------CCAAAAAAAAT-GAATT--T--AATCTAATGTGG
GCA_000001735.2_TAIR10.1_rm.out377                 GATCTCTT--A----TCTAAAAGAGAT-GAGTT--T--AACCTACTGT-A
GCA_000001735.2_TAIR10.1_rm.out383                 GATCTCTTAT------CCAAAGAAGAT-GTATT--T--AACCTGGTGTGG
GCA_000001735.2_TAIR10.1_rm.out385                 GATCTCTTCTCCA------AAGGAGAT-GAATT--T--AACTTGGTGTGG
GCA_000001735.2_TAIR10.1_rm.out387                 GATCTATTTT------TCAAAGGAGAT-GTATT--T--AATCTAG-----
GCA_000001735.2_TAIR10.1_rm.out388                 GATCTCTTG------TCTAAAAAAGAT-GAATT--T--AACCTGGTAT--
GCA_000001735.2_TAIR10.1_rm.out392                 AATATTTTCT------CCAAAATGAATTT---------TACAAGTTATGG
GCA_000001735.2_TAIR10.1_rm.out411                 AATCTCTTAT------CCAAAGGCGAT-GAATT--T--AACGTAATGTGA
GCA_000001735.2_TAIR10.1_rm.out412                 GATTTCTT--T----CCCAAAGGATAT-GAATT--T--AATCTGGTGT-G
GCA_000001735.2_TAIR10.1_rm.out414                 ---ATCTCTTC----TCCGAAGGAGAT-AAATT--T--AACTTGGTGT-G
GCA_000001735.2_TAIR10.1_rm.out421                 GATCTCTTCT------CCAAAAGAGAT-GAATT--C--A-----------
GCA_000001735.2_TAIR10.1_rm.out430                 ----------------TAAA-AGAGAT-GAATT--T--AATCTACTATGG
GCA_000001735.2_TAIR10.1_rm.out431                 --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out435                 AATCTCTTC------TCCAAAAAAGAT-GAATT--T--AACTTGGTGT-G
GCA_000001735.2_TAIR10.1_rm.out438                 ---ATTTTT------TTTCTAAAAGGA-GATGA--A--TTTAACCTGATA
GCA_000001735.2_TAIR10.1_rm.out440                 AATCTTTTTT------TCAAAGGAAAT-GAATT--T--AATCAGATGTGA
GCA_000001735.2_TAIR10.1_rm.out444                 GGATCTTTTT------CAAAAAAAAAA---AAG--T--AATATGATGTGG
GCA_000001735.2_TAIR10.1_rm.out447                 TGTT--TTCT------TTAAAAGAAAT-GAATT--T--AACTTGTTGTAG
GCA_000001735.2_TAIR10.1_rm.out450                 GATTTTTTC------TCCAAAGAAGAT-AAATT--T--AATCTGGTGT-G
GCA_000001735.2_TAIR10.1_rm.out451                 GATTTCTTCT------CCT-AAAGAAAGAAATT--T--AATTTGGTGTGA
GCA_000001735.2_TAIR10.1_rm.out453                 GATATTTTCT------CCAAAAATAGATAAATT--T--AATTAGGTATGG
GCA_000001735.2_TAIR10.1_rm.out455                 GATCTCTTCT------TTAATCTGATG-TGGAT--T--TTGCCTCAGAGA
GCA_000001735.2_TAIR10.1_rm.out456                 GATCTTTTCT------TCAAACGAGAT-AATCA--A--TCTAATACTATT
GCA_000001735.2_TAIR10.1_rm.out457                 ---TTTCTTT------CTAAAACAGAT-GAATG--T--AACCTAACGTGT
GCA_000001735.2_TAIR10.1_rm.out460                 AATTTTTTTT------CCAAAAATATG--AATT--T--AACTAGATGTGA
GCA_000001735.2_TAIR10.1_rm.out465                 GATCTCTTCTC------TAAACCAGAT-GAATT--T--AATCTGGTCGTG
GCA_000001735.2_TAIR10.1_rm.out467                 ATTTTTTTCC------GAAGAAAA--G-GAATT--T--AACTTGGTGTGG
GCA_000001735.2_TAIR10.1_rm.out468                 GATCTCTT--C----TCCAAAGGAGAC-GAATT--T--AACCTGGTGT-G
GCA_000001735.2_TAIR10.1_rm.out470                 ------------------------GGATAAATT--T--AATTTTGTGTGA
GCA_000001735.2_TAIR10.1_rm.out474                 AATATCTTC------TTTAAAAGAGAT-GAATT--T--AACCTGATAT--
GCA_000001735.2_TAIR10.1_rm.out478                 GATCTTTTTT------CCAAATGAGAT-AAATG--T--AATCTGATGTGG
GCA_000001735.2_TAIR10.1_rm.out481                 ------------------------------ATT--T--AACCTGGTATAG
GCA_000001735.2_TAIR10.1_rm.out494                 GATCTTTT------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out496                 GATCTCTTCT------CCGAAAGAGAT-G---------------------
GCA_000001735.2_TAIR10.1_rm.out500                 GATTTCTTCG------TCAAATAAAAT-GAATT--T--ATTCTAGTGTGG
GCA_000001735.2_TAIR10.1_rm.out515                 GATCTCTTCTCCA------AAGGAGAT-GAATT--T--AACCTGGTGTGG
GCA_000001735.2_TAIR10.1_rm.out516                 GATCTCTTCTCTA------AAAGAGAT-GAATT--T--AACTTGGTGTGG
GCA_000001735.2_TAIR10.1_rm.out526                 -----------------------------------------------TGG
GCA_000001735.2_TAIR10.1_rm.out536                 AATCTATTTT------CTAAAGAATAT-AAATT--T--AACTTGTGT---
GCA_000004255.1_v.1.0_rm.out84                     AATATCTTCTTCA------AAAGAAAT-GAATT--T--AACTTGGTATGA
GCA_000004255.1_v.1.0_rm.out117                    GATCTCTTCTCCA------AAAGAAAT-GAATT--T--AACTTGGTGTGG
GCA_000004255.1_v.1.0_rm.out118                    GATCTCTTC------TCCGAAGGCCAT-GAATT--T--AACCCGGTGTGA
GCA_000004255.1_v.1.0_rm.out172                    GATCTCTTTTCCA------AAGGAGAT-GAATT--T--AACCCGGTGTGG
GCA_000004255.1_v.1.0_rm.out184                    AATCTCTTCTCCA------AAGGAGTT-GAATT--T--AATCTGGTATGG
GCA_000004255.1_v.1.0_rm.out199                    TATCTCTTCTCTA------AAAGAGAT-GAATT--T--AATCTGGTGTGG
GCA_000004255.1_v.1.0_rm.out224                    GGTTTC--CTT----GCCAAATA-----AAAG--ATATTACATGGTTTGG
GCA_000004255.1_v.1.0_rm.out233                    GATCTCTTC------TCCAAAAGAGAT-GAATT--T--AACCTGGTGT-G
GCA_000004255.1_v.1.0_rm.out234                    AATCTCTTCTCCA------AAGGAAAT-GAATT--T--AACCTGGTGTGG
GCA_000004255.1_v.1.0_rm.out240                    GATCTCTTCTCCG------AAGCAGAT-GAATT--T--AACCTGGTGTGG
GCA_000004255.1_v.1.0_rm.out248                    GATCTTTTATCTG------AAGGAAAT-AGATT--T--AACCTGGTATGG
GCA_000004255.1_v.1.0_rm.out259                    GATCTCTTCGATCC----GAAGAAGAT-GAATC--T--AACTTGGTGTGG
GCA_000004255.1_v.1.0_rm.out260                    GATCTCTTTCTTTT-CTCCAAAAAGAT-AAATT--T--AATTTGGTGTGG
GCA_000004255.1_v.1.0_rm.out275                    GATCTCTTCTCCA------AAGGAGAT-GAATT--T--AACTTGGTGTAG
GCA_000004255.1_v.1.0_rm.out314                    GATTTATTCTCCA------AAAGAGTT-GAATT--T--AATCTGGTGTGA
GCA_000004255.1_v.1.0_rm.out320                    GATCTCTTCTCCA------AAAGAGAT-GAATT--T--AACCTGGTGTGG
GCA_000004255.1_v.1.0_rm.out334                    GATTTCTT--C----TCCGAAGGAGAT-GAATT--T--AATCTGGTGT-G
GCA_000004255.1_v.1.0_rm.out343                    GATCTCTA--C----TTTAAAAGAGAT-GAATT--T--AATTTGGTGT-G
GCA_000004255.1_v.1.0_rm.out359                    GATCTCTTCTCCG------AAAGAGAT-GAATA--T--AATTTGGTGTGG
GCA_000004255.1_v.1.0_rm.out362                    GATCTCTTCTCCG------AAGGATAT-GAATT--T--AACTTGGTGTGG
GCA_000004255.1_v.1.0_rm.out363                    GATCTCTTCTCCA------ACGGAAAT-TAATT--C--AATTTGGTGTGA
GCA_000004255.1_v.1.0_rm.out368                    GATCTCTTCTAA-------AAAAAAAT-GAATT--T--AACCTGGTGTGC
GCA_000004255.1_v.1.0_rm.out379                    GATCTCTTCTCCA------AAAGAAAT-GAATT--T--AACCTGGTGTGG
GCA_000004255.1_v.1.0_rm.out392                    GATCTCTTC------TCCGAAAAAGAT-GAATT--T--AACTTGGTGT-G
GCA_000004255.1_v.1.0_rm.out402                    GATTTATTTT------TTAAAAAATAA-GAATT--T--AATCTGGTGT-G
GCA_000004255.1_v.1.0_rm.out408                    GATTTCTTCT------CTCAAAAAGAT-AAATT--T--AATATGGTGTAG
GCA_000004255.1_v.1.0_rm.out415                    GATCTCTTCTCCA------AAAGAGAT-GAATT--A---ACCTGGTGTGA
GCA_000004255.1_v.1.0_rm.out424                    GATCTCTTCTTCA------AAGGAGAT-GAATT--T--AACCTGGTGTGG
GCA_000004255.1_v.1.0_rm.out434                    GATCACTTTTCCA------AAAGAGAT-GAATT--T--AACCTGGTGTGG
GCA_000004255.1_v.1.0_rm.out437                    GGTCTG--CTC----TCCAAAAG-----AGAGTTATATTACATGGTTTGA
GCA_000004255.1_v.1.0_rm.out450                    GATCTCCTCTCCA------AATGAGAT-GAATT--T--AACATGGTGTGG
GCA_000004255.1_v.1.0_rm.out459                    --------------------------------------AACATGGTAT-G
GCA_000004255.1_v.1.0_rm.out463                    ATCTCTTCTTCG-------AAGAAGAT-GAATT--T--AACCTGGTGTGA
GCA_000004255.1_v.1.0_rm.out469                    CATCTCTTC------TCCAAAAGAGAT-GAATT--T--AATTTGGTGT-A
GCA_000004255.1_v.1.0_rm.out525                    GATCTTTTCTCCA------AAGGAGAT-GAATT--T--AACTTGGTGTGG
GCA_000004255.1_v.1.0_rm.out543                    AATCTCTTCTCCG------AAGGACAT-GAATT--T--AATCTGGTGTAG
GCA_000004255.1_v.1.0_rm.out552                    --------------------------------------------------
GCA_000004255.1_v.1.0_rm.out588                    GATCTCTTCTCCG------AAGGAGAT-GAATT--T--AATCTGGTGTGA
GCA_000004255.1_v.1.0_rm.out599                    AGTCTG--CTC----TCCAAAAG-----AGAGTTATATTACATGGTTTGG
GCA_000004255.1_v.1.0_rm.out613                    GATCTCTTCT------CCGAAAGAGAT-CAATT--T--AACTTGGTGTAG
GCA_000004255.1_v.1.0_rm.out622                    GATCTCTTC------TCCAAAGGAGAT-GAATT--T--AACCTGGTGA-G
GCA_000004255.1_v.1.0_rm.out629                    AATCTTTTC------TCCGAAAAAAAT-GAATT--T--AATTTGAAAT-G
GCA_000004255.1_v.1.0_rm.out630                    AATCTTTTC------TCCGAAAAAAAT-GAATT--T--AATTTGAAAT-G
GCA_000004255.1_v.1.0_rm.out651                    AGTCTG--CTC----TCCAAAAA-----AGAGTTATATTACATAGTTTAG
GCA_000004255.1_v.1.0_rm.out652                    AATCTCTTAT------CCAAAGAAAAT-GAATT--T--AATCTGGTGTGG
GCA_000004255.1_v.1.0_rm.out653                    GGTCTG--CTC----TCCAAAGG-----AGAGTTATATTACATGGTTTGG
GCA_000004255.1_v.1.0_rm.out662                    GATCTCTTCTCCA------AAGGAGAT-GAATT--T--AACCTGGTGTGG
GCA_000004255.1_v.1.0_rm.out678                    GGTCTG--CTC----TCCAAAGG-----AGAGTTATATTACATGGTTTGG
GCA_000004255.1_v.1.0_rm.out687                    GATCTCTTCTCTA------AAGGAGAT-GAATT--T--AATCTGGTATGG
GCA_000004255.1_v.1.0_rm.out693                    AATCGTCTTC----------------------------------------
GCA_000004255.1_v.1.0_rm.out698                    GGTCTG--CTG----TCCAAAAG-----AGAGTTATATTACATTGTTTGG
GCA_000004255.1_v.1.0_rm.out708                    GATCTCTTCTCCA------AAGGAGAT-GAATT--T--AACTTGGTGTGG
GCA_000004255.1_v.1.0_rm.out712                    GATTTCTTC------TCCGAAGAAGAT-GAATT--T--AACCTGGTGTGG
GCA_000004255.1_v.1.0_rm.out713                    GATCTCTTCAC----TAA--AGGAAAT-GAATT--T--AACCTGGTGT-G
GCA_000004255.1_v.1.0_rm.out729                    --------------------------------------------------
GCA_000004255.1_v.1.0_rm.out740                    GATCTCCTCTCCA------AAGGAGAT-GAATT--T--AACCTGGTGTGA
GCA_000004255.1_v.1.0_rm.out760                    GATCTCTTCTTCA------AAATAGAT-GAATT--T--AATCTGATATGG
GCA_000004255.1_v.1.0_rm.out770                    AATCTTTTCT------CCAAAAAAAAT-GAATT--T--AATCTGGTGTGG
GCA_000004255.1_v.1.0_rm.out774                    GATTTCTTCTCCA------AATGAGAT-GAATT--T--AATCTGGTGTGG
GCA_000004255.1_v.1.0_rm.out791                    -----------------------GAAT-TTACA--A--AACCTGGTGTAG
GCA_000004255.1_v.1.0_rm.out792                    GATTTCTTTTCCA------AAAGAGAT-GAATT--T--AACCTGGTGTAG
GCA_000004255.1_v.1.0_rm.out827                    GATCTATTC------------TCAGTT-GAATT--T--AATCTGGTGTGG
GCA_000004255.1_v.1.0_rm.out837                    GATCTCTTTTCTA------AAGAAGAT-GAATT--T--AACCTAGTGTGG
GCA_000004255.1_v.1.0_rm.out843                    GATCTCTT--C----TCTAAAGAAGAT-GAATT--T--AATCTGGTAT-A
GCA_000004255.1_v.1.0_rm.out849                    AATCTTTTC-----------------------------------------
GCA_000004255.1_v.1.0_rm.out852                    GATCTCTTCT------CCGAATGAGAT-GAATT--T--AATCGATATGGT
GCA_000004255.1_v.1.0_rm.out871                    G-------------------------------------------------
GCA_000004255.1_v.1.0_rm.out888                    GGTCTG--CTC----TCCAAAGG-----AGAGTTATATTACATGGTTTGG
GCA_000004255.1_v.1.0_rm.out894                    GATCTCTTCTCCG------AAGGAGAT-CAATT--T--A-----------
GCA_000004255.1_v.1.0_rm.out895                    -------------------------AT-AAATT--T--AACCTGGTGTGG
GCA_000004255.1_v.1.0_rm.out906                    ATTCTCTTCT------CTAAAAAATAT-GAATT--T--AACCGTGTGTAT
GCA_000004255.1_v.1.0_rm.out959                    GATCTCTTCTCCA------AGGGAGAT-GAATT--T--AATCTGGTGTAG
GCA_000004255.1_v.1.0_rm.out997                    GATCTTATCTCCA------AAGAAGAT-GATTT--T--AATCTGGTGTGG
GCA_000004255.1_v.1.0_rm.out1002                   GATCTCTTTTCCA------AAAGAGAT-GAATT--T--AACCTGGTGTGG
GCA_000004255.1_v.1.0_rm.out1005                   GATCTCTTCTCCA------AAGGAGAT-GAATT--T--AACTTGGTATGG
GCA_000004255.1_v.1.0_rm.out1006                   AATCTCTTCTCCA------AAAGAGAT-GAATT--T--AACTTGGTGGAT
GCA_000004255.1_v.1.0_rm.out1009                   GATCTCTTC------TCCAAATGAGAT-GAATT--T--AACATGGTGT-G
GCA_000004255.1_v.1.0_rm.out1033                   GATCTCTTCTCCG------AAGGAGAT-GAATT--T--AACCTGGTGTGG
GCA_000004255.1_v.1.0_rm.out1045                   GATCTG--TTC----TCCAAAGA-----AATGTTAAATTTCATGGTTTGG
GCA_000004255.1_v.1.0_rm.out1072                   GATCTCTTCTCCT------AAGGAGAT-GAATT--T--AACTTGGTTTGG
GCA_000004255.1_v.1.0_rm.out1126                   GATCTCTT--C----TCCAAAGGAGAT-GAATT--T--AATCTTGTGT-G
GCA_000004255.1_v.1.0_rm.out1132                   AGTGTTGGGT------TCGAAGGAGAT-GAATT--T--AATTTGGTGTGG
GCA_000004255.1_v.1.0_rm.out1147                   GATTTCTTCTCCA------AAGGAGAT-GAATT--T--AATCTGGTCTGG
GCA_000004255.1_v.1.0_rm.out1187                   GATCTCTTCTTCA------GAGGAGAT-GAATT--T--AACCTGGTGTGG
GCA_000004255.1_v.1.0_rm.out1200                   GGTCTG--CTC----TCCAAAGG-----AGAATTATATTACATGGTTTGG
GCA_000004255.1_v.1.0_rm.out1215                   GATCTCTTCCCCA------AAAGAGAT-GAATT--T--AATCTGGTGTGG
GCA_000004255.1_v.1.0_rm.out1219                   GGTCTG--CTC----TCCAAAGG-----GGAGTTATATTGCATGGTTTGG
GCA_000004255.1_v.1.0_rm.out1251                   GGTCTG--TTC----TCCAAAAA-----GGAGTTATATTACATGGTTTGG
GCA_000004255.1_v.1.0_rm.out1254                   GGTCTG--CTC----TCCAAAGG-----GGAGTTATATTACATGGTTTGG
GCA_000004255.1_v.1.0_rm.out1276                   GATCTG--CTC----TCCAAAAG-----AGAGTTATATTACATGGTTTGG
GCA_000004255.1_v.1.0_rm.out1287                   GATTTAGTCT------AGTGTGGGTCC-CGCTT--C--TAGGAGA-----
GCA_000004255.1_v.1.0_rm.out1300                   GATCTCTTCTCCA------AATGAGAT-GAATT--T--AACCTGATGTGG
GCA_000004255.1_v.1.0_rm.out1305                   GGTCTG--CTC----TCCAAAGG-----GGAGTTATATTGCATGGTTTGG
GCA_000004255.1_v.1.0_rm.out1314                   --------------------------------------------------
GCA_000004255.1_v.1.0_rm.out1323                   GATCTCTTCTCCG------AAGGATAT-GAATT--T--AACTTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out13                  GGTCTC--CTC----TCCAAAGG-----ACAGTTATATTACATGGTTTGG
GCA_000523005.1_Ahal_1.0_rm.out19                  GATTTATTTTTCA------AAAAAGCT-GAATT--T--AATCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out20                  AGTCTG--CTC----TCTAAAGG-----AGAGTTATATTACATGGTTTGA
GCA_000523005.1_Ahal_1.0_rm.out28                  -------------------------AT-GAATT--T--AACCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out41                  GGTCTG--CTC----TCCAAAGG-----GGAGTTATATTACATGGTTTGG
GCA_000523005.1_Ahal_1.0_rm.out48                  GATCTTTTCTCTA------AAAGAAAT-GAATA--T--AACCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out79                  AATCTCTTCTTCA------AAGGAGAT-GAATT--T--AACCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out80                  TATCTCTTC------TCTCAAAATTAT-GAATT--T--AATTTGGTG---
GCA_000523005.1_Ahal_1.0_rm.out94                  GATCTCTTCTCCA------AAGGAGTT-GAATT--T--AATCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out104                 GATCTG--TTC----TCCAAAAG-----AAAGTTAATTTACATATTATAG
GCA_000523005.1_Ahal_1.0_rm.out105                 GATCTG--CTC----TCCAAAAG-----AGAGTTATATTATATGGTTTGG
GCA_000523005.1_Ahal_1.0_rm.out114                 GATCTCTTCTCCA------AAGGAGAT-GAATT--T--AACCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out117                 GATCTCTTC------TCCAATATAAAT-AAATT--T--AATTTGGTATGG
GCA_000523005.1_Ahal_1.0_rm.out121                 AATGTTGGAT------TCGAAAGAGAT-GAATT--T--AATTTGGTGTGT
GCA_000523005.1_Ahal_1.0_rm.out157                 GATCTCCT-----------TCGGAGAT-AAATT--T--ATCTTGGTGAGG
GCA_000523005.1_Ahal_1.0_rm.out159                 GATCTCTTCTCCG------AAGGAGAT-AAATT--T--AACCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out160                 GATCTCTT--C----TCCAAAGGAGAT-GAATT--T--AATCTTGTGT-G
GCA_000523005.1_Ahal_1.0_rm.out176                 GATCTCTTCTCCA------AAGGAGAT-GAATT--T--AACCTTGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out182                 AATCTCTTC------TTCGAAGAATA--TAATT--T--AACTTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out188                 GATCTCTTTTATA------AAGGAGAT-GAATT--T--AACCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out192                 GATCTTTTCTCCA------AAGGAGAT-GAATT--T--AACCTAGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out194                 GGTCTG--CTC----TTCAAATG-----GGAGTTATATTACATGGTTTGA
GCA_000523005.1_Ahal_1.0_rm.out198                 GATCTCTTCTCCA------AAGGAGAT-GAATT--T--AACCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out201                 GATCTCTTCT------GCGAAGAAGAT-GAATT--T--AACCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out203                 AATCTTTTCTCCA------AAGGAGAT-GAATT--T--AATCTAGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out210                 --GATCTCTTC----TCCGAAAGAGAT-GAATT--T--AACCTGGTGT-G
GCA_000523005.1_Ahal_1.0_rm.out211                 GATCTCTTCTCCA------AAAGAGTT-GAATT--T--AATCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out217                 GATATCTTCT------CTAAATGAGAT-GAATT--T--CATCTGTCTCGA
GCA_000523005.1_Ahal_1.0_rm.out223                 ATCTCTTCT------CTAAAAAGAGTT-GAATT--T--AATCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out236                 GGTCTA--CTC----TCCAAAGG-----AGAGTTATATTACATGGTTTGG
GCA_000523005.1_Ahal_1.0_rm.out251                 GATCTCTTCTTCG------AAGAAGAT-GAATT--T--AACTTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out252                 GATCTCTTCT------CCGAAGGAGAT-GAATT--T--AACCTGGTGTGA
GCA_000523005.1_Ahal_1.0_rm.out259                 GATATCTTCTCCA------AAAGAGAT-GAATT--T--AATCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out267                 GATCTCTCCTCCA------AAGGAGAT-GAATT--T--AAACTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out282                 GATCTCTTCT------CCAAAGGAGAT-GAATT--T--AACCTGGCGTGG
GCA_000523005.1_Ahal_1.0_rm.out284                 GATCTCTTTTCCA------AAAGAGAT-GAATT--T--AACATGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out291                 GGTCTG--CTC----TCCTAAGG-----AGAGTTATATTACATGGTTTGG
GCA_000523005.1_Ahal_1.0_rm.out305                 GATCTCTTCT------CCAAAGGAGAT-GAATT--T--AATCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out323                 GGTCTG--CTC----TCCAAAGG-----AGAGTTATATTACATGGTTTGG
GCA_000523005.1_Ahal_1.0_rm.out332                 GATCTCTTCTCCA------AAGGAGTT-GAATT--T--AATCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out335                 GATCTCTTC------TCTGAAAGAGAT-GAATT--T--AATTTGGTGT-A
GCA_000523005.1_Ahal_1.0_rm.out339                 GATCTCTTCT------CCGAAGGAGAT-GAATT--T--AACTTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out344                 GATCTG--TTC----TCCAAAAGAAAGTAAAATTATATTATATAGTGTAG
GCA_000523005.1_Ahal_1.0_rm.out349                 GATCTTTTCTCCA------AATAAGTT-GAATT--T--GATTTGGTATGG
GCA_000523005.1_Ahal_1.0_rm.out365                 ATTTTTTTTTCCA------AAAGAGAT-TAATT--T--AATCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out373                 GATCTCTT--T----TCTAAAGGAGAT-GAATT--T--AATCTGGTGT-G
GCA_000523005.1_Ahal_1.0_rm.out379                 GATCTTTTCT------CCAAAAAGAT--GAATT--T--AACCTAGTATGG
GCA_000523005.1_Ahal_1.0_rm.out399                 GATCTCTTTT------CCAAAGGAGAT-GAATT--T--AACCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out413                 GATCTCTTCTCTG------AAAGAGAT-GAATT--T--AACATGGTGTGA
GCA_000523005.1_Ahal_1.0_rm.out451                 GATCTCTTTTTCA------AAGAAGAT-GAATT--T--A-ACTGGTATGG
GCA_000523005.1_Ahal_1.0_rm.out452                 GATATTTTCT------CTGAAAGAGAT-AAATT--T--AAC---------
GCA_000523005.1_Ahal_1.0_rm.out459                 GATCTC--CTC----TCCAATGAA----AAATCTAAATTACATGGTATGG
GCA_000523005.1_Ahal_1.0_rm.out460                 GGTCTG--CTC----TCCAGAGG-----AGAGTTATATTACATGGTTTGA
GCA_000523005.1_Ahal_1.0_rm.out491                 GGTATG--TTC----TCCAAAGG-----AGAGTTATATTACATGGTTTGG
GCA_000523005.1_Ahal_1.0_rm.out504                 GATCTCTTCTCCA------AAAGAGAT-GAATT--T--AACCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out510                 GGTCTG--CTC----TCTAAAGG-----AGAGTTATATTACATGGTTTGG
GCA_000523005.1_Ahal_1.0_rm.out511                 GGGATCTCTTC----TCCAAAGGAGAT-GAATT--T--AACCTGGTGT-C
GCA_000523005.1_Ahal_1.0_rm.out520                 GATTTTTTCTCCA------AAGGAGAT-GAATT--T--AACCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out521                 GATCTCTTCTCCA------AAGGAGAT-GAATT--T--AATTTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out524                 GATCTTTTTT------CCAAATGAGAT-GAATT--T--AATCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out542                 GATATCTTTTCCA------AAAGAGAT-GAATT--T--TACCTAGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out543                 GATCTCTTCTCCA------AAGGAGAT-GAATT--T--AACCTGGTGTAG
GCA_000523005.1_Ahal_1.0_rm.out550                 AATCTCTTCTCCA------AAAGAGAT-GAATT--T--AACCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out551                 AATCTCTTTTCCG------AAGGAGAT-GAATT--T--AATTTGGTGTGA
GCA_000523005.1_Ahal_1.0_rm.out561                 GATCTCTTCTCCG------AATGAGAT-GAATT--T--AATCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out565                 GATCTCTTCT------CCAAAGGAGAT-GAATT--T--AACATGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out566                 ----------------------------------------CCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out577                 GATCTTTTCTCCA------AAGGAGAT-AATTT-----AATCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out584                 AATATTTTTT------TCCGAAAAAGATGAATT--T--AACATAGTGTAA
GCA_000523005.1_Ahal_1.0_rm.out588                 AATCTCTTCTTCA------AAAGAGAT-GAATT--T--AACCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out589                 ------------------------------------------TGTTGT-G
GCA_000523005.1_Ahal_1.0_rm.out591                 GATCTCTTCT------CCGAAAGATAT-GAATT--T--------------
GCA_000523005.1_Ahal_1.0_rm.out595                 GATATCTTCTCTA------AAGGAGAT-AAATT--T--AACCTGGTGTGA
GCA_000523005.1_Ahal_1.0_rm.out600                 -----------------AAA-AAAAAA-AAATT--T--ACCCGGGGGGGG
GCA_000523005.1_Ahal_1.0_rm.out601                 GATCTCTT--C----TCCGAAAGAGAT-GAATT--T--AACCTGGTGT-G
GCA_000523005.1_Ahal_1.0_rm.out604                 GATATTTTTTCCA------AAGGAGAT-GAATT--T--AACCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out613                 GATCTCTTCCCCA------AAAGAGAT-GAATT--C--AACCTAATGTGA
GCA_000523005.1_Ahal_1.0_rm.out617                 GATATTTTCTCCA------AAGGAGAT-GAATT--T--AACTTGATGTGG
GCA_000523005.1_Ahal_1.0_rm.out618                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out621                 AATCTCTTCTCAG------AAGGAAAT-GAATT--T--AATCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out622                 GATCTCTTAT------CTAAAAAAGAT-GAATT--T--AACTTAGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out631                 AGGATTTTTTC----TCCCAAAGAGAT-GAATT--T--AATCTGGTGT-G
GCA_000523005.1_Ahal_1.0_rm.out632                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out633                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out652                 GATCTCTTCT------CCAAAGGAGAT-AAATT--T--AACCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out668                 GGTCTG--CTC----TTCAAAGG-----AGAGTTATATTACATGGTTTGG
GCA_000523005.1_Ahal_1.0_rm.out672                 GGTCTG--CTC----TCCAAAGA-----AGAGTTATATTACATGGTTTGG
GCA_000523005.1_Ahal_1.0_rm.out685                 GATCTTTTCT------CCAGAGAAAAT-GAATT--T--AATTTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out695                 GATCTATT--T----TCCAAAAGAGAT-GAATT--T--TATCTGGTGT-G
GCA_000523005.1_Ahal_1.0_rm.out716                 GATCTCTTCT------CTAAAAGAGAT-GAATT--T--TACCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out726                 GGTCTG--CTC----TCCAAAGG-----AGAGTTATATTACATAGTTTGG
GCA_000523005.1_Ahal_1.0_rm.out729                 GATCTCTTCTCCG------AAGGAGAT-GAATA--T--AACCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out736                 GATCTCTTCTCCG------AAAGAAAT-GAATT--T--AACCTGATGTAG
GCA_000523005.1_Ahal_1.0_rm.out750                 AATCTCTTCT------CCAAAAGAGAT-GAATT--T--AACCTGGT----
GCA_000523005.1_Ahal_1.0_rm.out758                 GGTCTG--CTC----TCCAAAGG-----AGAGTTATATTACATGGTTTGG
GCA_000523005.1_Ahal_1.0_rm.out775                 GATCTCTTTT------CCAAAGGAGAT-GAATT--T--AATCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out776                 GATCTCTTCTCCA------AATGAGAT-GAATT--T--AATCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out777                 GATCTCTTCTCCG------AAGGAGAT-GAATT--T--AACTTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out780                 GATCTCTTCTCCG------AAGGAGAT-GAATT--T--AACCTGGTATAA
GCA_000523005.1_Ahal_1.0_rm.out825                 ------------------------------------------TGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out832                 GGTCTG--CTC----TCCAAAGG-----AGA-------------------
GCA_000523005.1_Ahal_1.0_rm.out849                 GATCTCTTTT------TCAAGG-AGAT-GAATT--T--AACATGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out852                 GATCTCTTCT------CTAAAGGAGAT-GTGGG--T--CCCACCTTTGGG
GCA_000523005.1_Ahal_1.0_rm.out855                 GATCTCTTCTCCA------AAGGAGAT-GAATT--T--AACCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out865                 GGTCTG--CTC----TCCAAAGG-----AGAGTTATATTACATGGTTTGG
GCA_000523005.1_Ahal_1.0_rm.out868                 GAACTTTTTT------ACAAAGAAGAT-GAATT--T--AATTTGGTGTAG
GCA_000523005.1_Ahal_1.0_rm.out877                 AGTCTG--TTT----TCCAAAGG-----AGAATTATATTACATGATTTGG
GCA_000523005.1_Ahal_1.0_rm.out886                 GATCTCTTCTTCA------AAGGAGAT-GAATT--T--AACCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out897                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out902                 GGTCTG--CTC----TCCAAAGG-----AGAGTTATATTACATGGTTTGG
GCA_000523005.1_Ahal_1.0_rm.out908                 GATCTCTTCTCCA------AAAGAGAT-GAATT--T--AACCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out909                 GATTTATTTTTTG------AAAAATAA-GAATT--T--AATCTGATGTGG
GCA_000523005.1_Ahal_1.0_rm.out937                 GATCTA--TTC----TCCAAAGAATAGTAAAGTTATATTACATAGTTTAG
GCA_000523005.1_Ahal_1.0_rm.out949                 GATCTCTTTTCCG------AAGTAGAT-GAATT--T--AATTTGGTGTAG
GCA_000523005.1_Ahal_1.0_rm.out954                 GATCTTTTC------TCCTAAAGAGAT-GAATT--T--AGTCTGGTGT-G
GCA_000523005.1_Ahal_1.0_rm.out956                 GATCTCTTCTCTA------AAGGAGAT-GAATT--T--AATTTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out959                 ---ATCTCTTC----TCCAAAGAAGAT-GAATT--T--AACCTGGTGT-G
GCA_000523005.1_Ahal_1.0_rm.out964                 AATCTCTTCTCCA------AAGGAGAT-GAATT--T--AACCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out965                 GATCTCTTCTCTA------AAGAAGAT-GAATT--T--AACCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out987                 GATCTCTT--C----TTCAAAAGAGAT-GAATT--T--AACCTAGTG---
GCA_000523005.1_Ahal_1.0_rm.out1037                GATCTCTTCTCCA------AAGAAGAT-GAATT--TTTAATCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out1040                AGTCTG--CTC----TCTAAAGG-----AGAGTTATATTACATGGTTTGA
GCA_000523005.1_Ahal_1.0_rm.out1047                GATCACTTTT------CCAAAAGAGAT-GAATT--T--AACCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out1059                GATCTCTTCTCCA------AATGAGAT-GAATT--T--AACTTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out1075                GATCTCTTCTCCA------AAGGAGAT-GAATT--T--AACTTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out1084                --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1085                --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1096                GATCTCTTCTCCA------AAAGAGAT-GAATT--T--AACCTGGTGTGA
GCA_000523005.1_Ahal_1.0_rm.out1100                GATCTTTTCTCTT------AAAGAAAT-GAATT--T--AATTTGGTATGG
GCA_000523005.1_Ahal_1.0_rm.out1101                GATTTCTTCTCCA------AAGGAGAT-GAATT--T--AACCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out1132                GGTTTG--CTC----TCCAAAAG-----AGAGTTATATTACATGGTTTGG
GCA_000523005.1_Ahal_1.0_rm.out1150                GATCTCTTCT------CCAAATGAGAT-AATTT--T--AATCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out1195                GATCTCTTCTCCA------AAGGAGAT-GAATT--T--AACCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out1196                GATCTCTTTTCCA------AAATAGAT-GAATT--T--AATCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out1198                GATCTCTTCTCCA------AAAGAAGT-GAATT--T--AACCTGTTGTGG
GCA_000523005.1_Ahal_1.0_rm.out1199                AATCTGTTCT------CCA-AAGG--------------------------
GCA_000523005.1_Ahal_1.0_rm.out1200                ---------------TCCAAAGGAGAT-GATTT--T--AATCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out1210                GATCTCTGGGA----GATGTAGGGC-------------------------
GCA_000523005.1_Ahal_1.0_rm.out1212                -ATCTCTTT------TCCAAAGAAAAT-GAATT--T--AACCTGGTAT-A
GCA_000523005.1_Ahal_1.0_rm.out1231                ---------------TCCAAAAGAGAT-GAATT--T--AACTTGGTGT-G
GCA_000523005.1_Ahal_1.0_rm.out1239                ------------------------------------------TGGTGT-G
GCA_000523005.1_Ahal_1.0_rm.out1240                GATCTCTTCT------CCGAAGGAGAT-GAATT--T--A-----------
GCA_000523005.1_Ahal_1.0_rm.out1254                GATCTTTTCTCCA------AAGAAGAT-GAATT--T--AACCTGGTGTAG
GCA_000523005.1_Ahal_1.0_rm.out1260                --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1289                GATTTCTTCTCCG------AAGGAGAT-TAATT--T--AACCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out1294                GATCTCTTCTCTA------AAGGAGAT-GAATT--T--AACCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out1302                GATCTG--CTC----TCCAAAGG-----AGAGATATATTACATGGTTTGG
GCA_000523005.1_Ahal_1.0_rm.out1316                GATTTCTTCT------CCAAAGAAGAT-GAATT--T--AACTTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out1317                GGTCTG--CTC----TCCAAAAA-----AGAGTTATATTACATGGTTTGG
GCA_000523005.1_Ahal_1.0_rm.out1318                AATCTCTTAT------TCGAAAGAGAT-GAATT--T--AACTTGGCGTGG
GCA_000523005.1_Ahal_1.0_rm.out1319                GATCTCTTCTCCA------AAAGAGAT-GAATT--T--AACTTGGTGTGA
GCA_000523005.1_Ahal_1.0_rm.out1321                AATTTCTTCT------CCAAAAGAGAT-GAATT--T--AACTTGATGTGG
GCA_000523005.1_Ahal_1.0_rm.out1341                GATCTCTTCT------TCAATAGAGAT-GAATT--T--AACCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out1348                GATCTCTTCTCCA------AAAGAGAT-GAAAT--T--AACCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out1349                GATCTCTTCTCTA------AAAGAGAT-GAAAT--T--AACCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out1370                ----------------GTAA-ATCTCC-CAGGT--G--GAGGTACTGTGG
GCA_000523005.1_Ahal_1.0_rm.out1371                GATCTCTTCT------CCAGAAGATG---AATT--T--AACCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out1378                GATCTCTTCTCCA------AATGAGAT-GAATT--T--AACCTGGTGTAG
GCA_000523005.1_Ahal_1.0_rm.out1404                GATCTCTTCT------CCAAAAAAGAT-GAATT--T--AACCTGGTGTAG
GCA_000523005.1_Ahal_1.0_rm.out1409                GATCTGTTAT------TCA-AATGAGATGAATT--T--AATTTGGTACGA
GCA_000523005.1_Ahal_1.0_rm.out1417                GATCTTTTCTCGA------AAGGAGAT-GAATT--T--AACCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out1419                GATCTCTTTTCTG------AACGAAAT-GAATT--T--AACCTGGAGTGA
GCA_000523005.1_Ahal_1.0_rm.out1420                GATCTCTTCT------CCAAAGGAGAT-GAATT--T--AACCTGGTGTGA
GCA_000523005.1_Ahal_1.0_rm.out1437                AT-CTCTTTT------TTAAAGGAGAT-GAATT--T--AACCTGGTATGG
GCA_000523005.1_Ahal_1.0_rm.out1442                GATATCTTCT------CCAAAAAAAAG-ATGAA--T--TTA---------
GCA_000523005.1_Ahal_1.0_rm.out1448                GATCTCTTCT------CCAAAGGAGAT-GAATT--T--AATCTGGTGTGA
GCA_000523005.1_Ahal_1.0_rm.out1451                GATCTCTTCTCCA------AATGAGAT-GAATT--T--AATCTGGTATGG
GCA_000523005.1_Ahal_1.0_rm.out1457                GATCTCTTTT------CTAAAAGAAAT-GAATT--T--AGCCTGGTGTGA
GCA_000523005.1_Ahal_1.0_rm.out1470                GATCTCTTCTCCG------AAGGAAAT-GAATT--T--AACCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out1472                GATCTTTT--C----TCTGAAAGAAAT-GAATT--T--AATCTGGTGT-G
GCA_000523005.1_Ahal_1.0_rm.out1478                -------------------------------------------------G
GCA_000523005.1_Ahal_1.0_rm.out1481                AATCTCTTCTCCA------AAGGAGAT-GAATT--T--AACCTGGTGTAA
GCA_000523005.1_Ahal_1.0_rm.out1516                GGTCTG--CTC----TCCAAAGG-----AGAGTTATATTACATGGTTTGG
GCA_000523005.1_Ahal_1.0_rm.out1582                GGTCTG--CTC----TCCAAATG-----AGAGTTATATTACATGGTTTGG
GCA_000523005.1_Ahal_1.0_rm.out1595                GGTTTG--CTC----TCCAAATG-----AGAGTTATATTACATGGTTTGG
GCA_000523005.1_Ahal_1.0_rm.out1660                ---------------------------------------ACTTGGTGT-G
GCA_000523005.1_Ahal_1.0_rm.out1673                --------------------------------------AACCTGGTAT-G
GCA_000523005.1_Ahal_1.0_rm.out1677                ---------------------------------------ACTTGGTGT-G
GCA_000523005.1_Ahal_1.0_rm.out1686                ---------------------------------------ATTTGGTGT-G
GCA_000523005.1_Ahal_1.0_rm.out1713                --------------------------------------AACCTGGTAT-G
GCA_000523005.1_Ahal_1.0_rm.out1853                GATCTCTTCTCCA------AAGAAGAT-GAATT--T--AACCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out1854                GATCTCTTCTCCA------AAAGAGAT-GAATT--T--AACCTGGTGTGG
GCA_000523005.1_Ahal_1.0_rm.out1860                GATCTCGTCTCCA------AAAGAGAT-GAATT--T--AACCTGATGTGG
GCA_000523005.1_Ahal_1.0_rm.out1868                AATCACTTCTCCA------AAGGAGAT-GAATT--T--AACCTGGTGTGT
GCA_000523005.1_Ahal_1.0_rm.out1869                GATCTA--TTC----TCCAAAGAAAAGTAAAGTTATATTACATAGTCTAG
GCA_000523005.1_Ahal_1.0_rm.out1887                GATCTCTTCTCCA------AAGGAGAT-GAATT--T--AACCTGGTGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out3     ATCTCTTCTCCA-------AAGGAGAT-GAATT--T--AACCTGGTGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out11    GATCTC--TTC----TCCAAAGGAGAT-GAATT--T--AACCTGGTGT-G
GCA_902850255.1_pseudohap_a_tetraploid_rm.out20    GATCTTTTCTCTA------AAGGAGAT-GAATT--T--AACCTGGTGTGA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out23    GATTTCTTCTCCA------AAAGAAAT-GAATT--T--AATTTGGTGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out28    GGTCTG--CTC----TCCAAAGA-----AGAGTTATATTACATGGTTTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out29    GGTCTG--CTC----TCCAAAAG-----AGAGTTATATTACATGGTTTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out44    GATCTCTTCTCCA------AAGGAGAT-GAATT--T--AACCTGGTGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out57    GATCTCTTCTC----CAATGAAGAAAA-AAATT--T--ACACTGGTGT-G
GCA_902850255.1_pseudohap_a_tetraploid_rm.out102   GATCTCTTCTCCA------AAGGAGAT-GAATT--T--AACCTGGTGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out104   TCCGTTGGGAGGGATCTCTTCTCCAAA-AAAGA--T--GAATTGAACC-T
GCA_902850255.1_pseudohap_a_tetraploid_rm.out115   GATCTCTTCT------CCAAAGGAGAT-GAATT--T--AATCTGGTGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out117   GATCTCTTCTCCA------AAGAAGAT-GAATT--T--AACCTGGTGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out143   GATCTAT-TTA----CTCAAACA-----AGAATTAAATTACATGGTCTGA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out183   GATCTCTTCTCCG------AAGGAGAT-GAATT--T--AACATGGTGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out227   GATTTCTTCTCCG------AATGAGAT-GAATT--T--AACCTGGTGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out231   AATCTCTTCTTCA------AAAGAAAT-GAATT--T--AATTTGGTATGA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out232   GATCTCTTTTCCG------AAGGAGAT-GGATT--T--AACATGGTGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out254   GGGATTACTTC----TCCGAGGGAGCT-GAATT--T--AACCTGGTGT-G
GCA_902850255.1_pseudohap_a_tetraploid_rm.out280   GATCTCTCTAA----AAAAAAAAAT-------T--T--AGTCTAGTGT-G
GCA_902850255.1_pseudohap_a_tetraploid_rm.out283   GATTTCTTC------TCCGAAAGAGAT-GAATT--T--AACATGATGT-G
GCA_902850255.1_pseudohap_a_tetraploid_rm.out299   GATCTCTTCTCCA------AAGGAGAT-GAATT--T--AACCTGATGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out317   AATCTTTTCTCCA------AAGGAGAT-GAATT--T--AATCTGGTGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out343   ---ATATCTTC----TCCAAAGGAGAT-GAATT--T--AACATGATGT-G
GCA_902850255.1_pseudohap_a_tetraploid_rm.out352   AATCTCTTCT------CCAAAGGAGAT-GAATT--T--AACCTGGT----
GCA_902850255.1_pseudohap_a_tetraploid_rm.out353   GATCTCTTCTC----CAA--AGGAGAT-GAATT--T--AACCTGGTGT-G
GCA_902850255.1_pseudohap_a_tetraploid_rm.out361   -------------------------TA-AATTA--C--AACATGGTGT-G
GCA_902850255.1_pseudohap_a_tetraploid_rm.out362   GATCTCTTCTCCA------AAAGAGAT-GAATT--T--AACTTGGTGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out387   AGGATCTTATC----TCCAAAGAAGAT-GATTT--T--AATCTGGTGT-G
GCA_902850255.1_pseudohap_a_tetraploid_rm.out414   AGGATCTTATC----TCCAAAGAAGAT-GATTT--T--AATCTGGTGT-G
GCA_902850255.1_pseudohap_a_tetraploid_rm.out456   GATCTCTTCTCTG------AAGGAAAT-AGATT--T--AACTTGGTATGA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out466   GATCTCTTCTCCA------AAGGAGAT-GAATT--T--AACCTGGTGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out469   GATCTATTCTCCA------AAGGAGAT-GAATT--T--AACCTGGAGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out478   GATTTTTTCT------CCAAATGAGAT-GAA-------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out479   GATCTCTTC------TCCAAAAGAGAC-AAATT--T--AATATGGTGTGT
GCA_902850255.1_pseudohap_a_tetraploid_rm.out494   GATCTCTTCTCCA------AAGGAGAT-GAATT--T--AACCTGGTGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out497   GATCTCTTCTCCA------AAGGAGAT-GAATT--T--AACCTGGTGTAG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out498   -----CTTTTC----TCCAAATGAGAT-GAATT--T--AATCTGGTGT-G
GCA_902850255.1_pseudohap_a_tetraploid_rm.out512   GATCTCTTCTATA------AAGGAGAT-GAATT--T--AACCTGGTGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out524   AATCTTTTCT------CCAAAAGAGAT-GAATT--T--AACCTGGT----
GCA_902850255.1_pseudohap_a_tetraploid_rm.out557   GATCTCTTCTCCGA-----AAAAAGAT-AAATT--T--AACCTAGTGTAG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out562   GATCTC--TTC----TCATAAGGAGAT-GAATT--T--AACCTGGTGT-G
GCA_902850255.1_pseudohap_a_tetraploid_rm.out563   GATCTTTTCTCAG------AAAGAGAT-GAATT--T--AACTTGGTGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out566   GATCTCTTCTCCG------AAGGAGAT-GAATT--T--AACCTGGTGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out582   GATCTCTTCTCCA------AAGGAGAT-GAATT--T--AACCTGGTGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out594   --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out597   --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out602   --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out604   GATCTCTTTT------TAAAAAAAGAT-GAATT--T--AATTTGGTGTAA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out619   AATCTCTTCTCCA------AAAGAGAT-GAATT--T--AATCTGGTATGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out655   AGTCTGTTCTC----TCCAAATG-----AGAGTTATATTACATGGTTTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out657   GATCTCTT--C----TCCGAAGGAGAT-GAATT--T--AATCTGGTGT-G
GCA_902850255.1_pseudohap_a_tetraploid_rm.out664   GGTCTG--CTC----TCCAAAGG-----AGAGTTATATTACATGATATGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out666   GATCTCTTCTCCA------AAGGAGAT-GAATT--T--AATCTGGAGTAG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out674   GGTCTG--CTC----TCCAAAGG-----AGAGTTATATTACATGGTTTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out675   GATGTCTTCTCCA------AAGGAGAT-GAATT--T--AACCTAGTGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out683   --CGTTGAG------AAAGA-TCTCTT-TCAGT--T--AATTTGGTGTAG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out697   GATCTCTTTTCCG------AAGGAGAT-GGATT--T--AACATGGTGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out703   GATCTCTTCCCTA------AACAAGAT-AAATT--T--AATCTGGTGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out709   GATCTCTTCTCTG------AAGGAAAT-AAATT--T--AACCTGGTATGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out726   GATCTTTTCT------TCGAAGGAGAT-GAATT--T--AATCTAG-----
GCA_902850255.1_pseudohap_a_tetraploid_rm.out736   GATCTTTTCTCCA------AAAGAAAT-GAATT--T--AATTTGGTGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out742   GATCTCTTCTCCA------AAAGAGAT-GAATT--T--AACTTGGTGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out745   GATCTCTTCTCCA------AAGGAGAT-GAATT--T--AACATGGTGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out748   GATCTCTTCTCCA------AAGGTGAT-GAATT--T--AACCTGGTGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out765   GATCTCTTCTCCG------AAAGAGAT-GAATT--T--AACCTGGTGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out767   GGTCTG--CTC----TCCATAGG-----GGAGTTATATTACATGGTTTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out774   GATCTCTTCTCCA------TAGGAGAT-GAATT--T--GACCTGGTGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out778   GATCTA--TTC----TCCAAAAGAAAGTAAAGTTATATTACATGGTCTAG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out781   GATCTCTTCTCCA------AAGGAGAT-GAATT--T--AACCTGGTGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out784   GATCTCTTCTCCG------ACAGAGAT-GAATT--T--AACCTGGTGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out807   GATCTCTTCTCTA------AAGGAGAT-GAATT--T--AACCTGGTGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out819   AATATCTTTTCCA------AAGGAGAT-GAATT--T--AACTTGGTGTAG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out840   GATCTCTTCTCCA------AAGGAGAT-GAATT--T--AACCTGATGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out843   GATCTCTTCTTCA------AAGGAGAT-GAATT--T--AACTTAGTGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out845   GATCTCTTCTCCA------AAGAAGAT-GAATT--T--AACCTGGTGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out865   --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out886   GGTCTG--CTC----TCCAAAGG-----AGAGTTATATTACATGGTTTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out911   GATCTCTTCTCCA------AAGGAGTT-GAATT--T--AATCTGGTGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out926   TTAGGTTTG------ACGTCCGTTGGG-AGGGA--T--AACCTGGTGT-G
GCA_902850255.1_pseudohap_a_tetraploid_rm.out933   GATCTCTTCTCCA------AAGGAGAT-GAATT--T--TACCTGGTGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out942   GGTCTG--CTC----TCCAAATG-----AGAATTATATTACATGGTTTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out948   GATCTCTTCTTCA------AAATAGAT-GAATT--T--AACCTGGTATGA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out950   AATCTCTTCTCCA------AAGGAGAT-GAATT--T--AACCTTGTGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out953   GATCTTTTTCTG-------AAGGAGAT-GAATT--T--AACCTGGTGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out968   GATCTCTTCT------ATAAAGGAGAT-GAATT--T--AACCTGGTGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out970   GATCTCTTCTCCG------AAAGAGAT-AAATT--C--AACCTGGTGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out976   GATTTATTTT------TTGAAAAATAA-GAATT--T--AATCTGGTCTGC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out993   GATCTA--TTC----TGCAAAAGAAAGTAAAGTTATATTACATAGTCTAG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1001  GATTTCTTCTCCA------AAGGAGAT-AAATT--T--AACCTGGTGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1006  -----------------------------------------CTGGTGT-G
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1026  GATCTCTTCTCC------------GAT-AAATT--T--ATTCTGGTGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1030  GGTCTG--CTT----TCCAAAAG-----GGAGTTATATTACATGGTTTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1050  GATCTCTTCTCCA------AAAGAGAT-GAATT--T--AACCTGGTGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1060  GATCTCTTCTCCA------AAGGAGAT-GAATT--T--AACCTGGTGTAA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1083  GATCTCTTTTCCA------AAGGAGAT-GAATT--T--AACCTGGTGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1090  GATCTCTTCTCCA------AAAGAAAT-GAATT--T--AACCTGGTGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1098  GATCTCTTCTCTG------AAGGAGAT-GAATT--T--AACCTGGTGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1101  GGTCTG--CTC----TCCAAAAG-----AGAGTTATATTACATGGTTTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1108  GATCTCTTC------TCCGAAGAAGAT-GAATT--T--AACCTGGTGTAG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1124  GATCTCTT--C----TCCAAAGGAGAT-GAATT--T--AATCTTGTGT-G
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1136  GATCTCTTCT------CCAAAGGAGAT-GAATT--T--AACCTGTTGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1155  GATCTCTTTT------CTTAAAGAGAT-AAATT--T--ATCCT-------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1156  GATCTCTTCTCTT------AAGGAGAT-GAATT--T--AATCTGGTGTGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1163  GATCTCTTTT------TTG-AAGGAGATGAATT--T--AATCTACTATGA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1164  GATCTCTTCGAAA--------GGAGAT-AAATT--T--AACTTGGTGTAG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1208  GATCTCTTTTCCG------AAAGAGAT-GAATT--G--AACATGGTGTGG

GCA_000001735.2_TAIR10.1_rm.out0                   ------------C----GCTTTTAAAAG-ATAT--------ATGGTTTTT
GCA_000001735.2_TAIR10.1_rm.out7                   G--------TTCC----GCCTCTCGGAG-A--------------------
GCA_000001735.2_TAIR10.1_rm.out11                  T--------CTCT----CACTGAGAAAT-ATA-----------AACTTTT
GCA_000001735.2_TAIR10.1_rm.out12                  G--------TCCCGC--CT--CTGGAAG-ATGTAGGGC--------CTTT
GCA_000001735.2_TAIR10.1_rm.out16                  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out18                  A--------TTTC----ACTTCTAAAAA-ATAT--------AAAATCTTC
GCA_000001735.2_TAIR10.1_rm.out19                  G--------TCCCGC--CT--CTGGAAG-ATGTAGGAC--------CTTT
GCA_000001735.2_TAIR10.1_rm.out25                  G--------TTTCG----CCTCTCGGAG-ATGTAGGTA----GGGCCTTT
GCA_000001735.2_TAIR10.1_rm.out33                  T--------AG--------------------------------GACCTTT
GCA_000001735.2_TAIR10.1_rm.out34                  A--------TCCCGC--CT--CTAGAAA-ATATAAGGC--------CTTT
GCA_000001735.2_TAIR10.1_rm.out35                  G--------GTTCC---GCCTTTGGGAT-ATATTGG--------GCTTTT
GCA_000001735.2_TAIR10.1_rm.out36                  G--------TCTC----GCCTTTTAGAA-ATGT--------AAAGCCTTT
GCA_000001735.2_TAIR10.1_rm.out55                  G--------ATCCT---GCATCTCGGAG-ATGTAG---------GCCTTT
GCA_000001735.2_TAIR10.1_rm.out56                  A--------TCCCGC--CT--CTAAAAG-ATATAGGGT--------TTTT
GCA_000001735.2_TAIR10.1_rm.out61                  G--------TCACGC--CTCTCGGAGAT-GTAGAGTCT---------TTT
GCA_000001735.2_TAIR10.1_rm.out65                  G--------TCTT----CCCTGAAAAAT-ACAT--------AGGGCCTTT
GCA_000001735.2_TAIR10.1_rm.out68                  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out70                  A--------TCCC----GCCTCTGGGAG-AT----------------GTA
GCA_000001735.2_TAIR10.1_rm.out73                  G--------AGTC-CC-ACCTTTAAAAA-ATGC--------AGGACTTT-
GCA_000001735.2_TAIR10.1_rm.out77                  --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out81                  --------------G--G--------------------------GCATTC
GCA_000001735.2_TAIR10.1_rm.out85                  A--------TTCCAC--CT--CTAAGAA-ATGTAAGGT--------CATT
GCA_000001735.2_TAIR10.1_rm.out91                  A--------TTCTGTTTCTAA----AAA-ATGTAGA--------GTATTC
GCA_000001735.2_TAIR10.1_rm.out98                  G--------GG---------------------------------------
GCA_000001735.2_TAIR10.1_rm.out103                 G--------TTC--C--GTTTATAGGAG-ACGT--------A-GACTTTC
GCA_000001735.2_TAIR10.1_rm.out110                 --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out116                 -----------------------------------------------TGT
GCA_000001735.2_TAIR10.1_rm.out119                 G--------TTTCGCC-GCCTTTAAAAA-ATAT--------AGAGTTTTT
GCA_000001735.2_TAIR10.1_rm.out126                 T---------CCC----GTCTCTTGAAA-ATGT--------ATGGATTTT
GCA_000001735.2_TAIR10.1_rm.out137                 C--------ATCCC---ACTTCTAAGAG-ATGTAAG--------ATTTTT
GCA_000001735.2_TAIR10.1_rm.out143                 G--------GTCCC---GCCTCTAGGAG-ATATAGG--------TTCTTC
GCA_000001735.2_TAIR10.1_rm.out149                 --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out155                 A------------TCCCGCCACTAGGAG-ATGTAAG--------GTTTTC
GCA_000001735.2_TAIR10.1_rm.out158                 G--------GTCTC---GCCTCTAGGAG-ATGTATG--------GCCTTT
GCA_000001735.2_TAIR10.1_rm.out175                 G--------GTACC---GCCTTTGGGAA-ATAT-----------------
GCA_000001735.2_TAIR10.1_rm.out177                 G------------TTCCGTCTCTAGGAG-ACGTAAA--------GTCTGC
GCA_000001735.2_TAIR10.1_rm.out179                 T--------GGAA----CTGTTCTTTTG-GATT--------AA-------
GCA_000001735.2_TAIR10.1_rm.out181                 --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out187                 C------------TCTCGTCTCTAGAAG-ATGTAGA--------CTTTCG
GCA_000001735.2_TAIR10.1_rm.out216                 T--------GGATCCCG-CCTCTAGAAG-ATGTAAG--------ACCTTC
GCA_000001735.2_TAIR10.1_rm.out218                 G--------ATCCC---GTCTCTAGAAA-ATATAGG--------GTCTTT
GCA_000001735.2_TAIR10.1_rm.out223                 A--------TCCCGTCTTTAT-----AG-ATGTAGA--------ACCTTC
GCA_000001735.2_TAIR10.1_rm.out225                 A--------TCCCAT--CTCTTTGGAAG-TCGT--------TGTATCTTC
GCA_000001735.2_TAIR10.1_rm.out228                 --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out229                 G--------TCCC----GCCTCTAGAAAAGGCT--------T-----TTG
GCA_000001735.2_TAIR10.1_rm.out231                 A--------TAT--A--ACG-------------------------CTTTC
GCA_000001735.2_TAIR10.1_rm.out247                 A--------TTCT----GTCTCTAAAAA-ACGTAAAGTTTTTGAGTTTTT
GCA_000001735.2_TAIR10.1_rm.out257                 G--------ATCAT---ATCTCTAGGAA-ATGTATGGC--------CTTC
GCA_000001735.2_TAIR10.1_rm.out261                 -------------------------------GGAGATGT--ATGGTCTTT
GCA_000001735.2_TAIR10.1_rm.out263                 G--------TCTCGC--C--------------------------------
GCA_000001735.2_TAIR10.1_rm.out264                 A--------TCTT----GCATTTGGGAG-ATGT-------ATAGCTCTTC
GCA_000001735.2_TAIR10.1_rm.out265                 A--------TCTC----GCCTATAAAAA-ATGT--------AGGATTTTC
GCA_000001735.2_TAIR10.1_rm.out266                 A--------GAAGAT--AT----------------------ATGATTTTT
GCA_000001735.2_TAIR10.1_rm.out281                 T--------ATAG----ATCCCTGAGAA-ATAT--------AAAACCTTT
GCA_000001735.2_TAIR10.1_rm.out283                 G--------TCCTAC--CT--CTGAAAA-ATGTAGGGC--------TTTT
GCA_000001735.2_TAIR10.1_rm.out286                 A--------TCTT----ACTTCTTACAG-ATAT-------AAAAATTTTC
GCA_000001735.2_TAIR10.1_rm.out288                 G------------TCTTCTTTCTGGGAG-ATGTAGC--------GCATTT
GCA_000001735.2_TAIR10.1_rm.out310                 G--------TCC--C--ACCTTTAAGAG-ATAT--------AAGTCCTTT
GCA_000001735.2_TAIR10.1_rm.out313                 G--------GTCCC---GCCTCTGAGAG-ATGTAGGGC--------ATGT
GCA_000001735.2_TAIR10.1_rm.out315                 G--------TCCTGC--CT--CTAGAAA-ATGTAGGGT--------CTTT
GCA_000001735.2_TAIR10.1_rm.out319                 --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out322                 G--------TCCCGC--CT--CTGGGAG-ATGTAAGGC--------CTTT
GCA_000001735.2_TAIR10.1_rm.out327                 G--------TCCC----GCCTTTGGGAG-AT----------------GTA
GCA_000001735.2_TAIR10.1_rm.out332                 G--------TCCCGC--TT--CTGGGAG-ATGTAGGAT--------CTTT
GCA_000001735.2_TAIR10.1_rm.out341                 --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out344                 --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out363                 A--------TTCT----AGGAAA-------TAT--------AGGGCCTCT
GCA_000001735.2_TAIR10.1_rm.out364                 --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out365                 G--------ATCTC---ATCTCTAAAAA-ATATAGG--------ACATTC
GCA_000001735.2_TAIR10.1_rm.out376                 G--------TTTC----GCATATCGGA-----------------AATGTA
GCA_000001735.2_TAIR10.1_rm.out377                 G--------ATCCC---GCCTCGGGAAA-AAATAGA--------GTCTTT
GCA_000001735.2_TAIR10.1_rm.out383                 G--------TCCA----TCTCCCAAAAG-A--------------------
GCA_000001735.2_TAIR10.1_rm.out385                 A--------TTCTGC--CT--CTAGGAT-ATGTAGGGT--------CTTT
GCA_000001735.2_TAIR10.1_rm.out387                 --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out388                 A--------GGTCTCTG-TCTTTGGAAG-ATATAAG--------GCCTTT
GCA_000001735.2_TAIR10.1_rm.out392                 T--------TCTC----GCCTCT-ATAAAAAAT--------AACGCTTTC
GCA_000001735.2_TAIR10.1_rm.out411                 G--------TCC--A--G--------------------------GTCTTC
GCA_000001735.2_TAIR10.1_rm.out412                 G--------ATCCC---GCCTCTAGAAA-ATGTAAG--------GTCTTT
GCA_000001735.2_TAIR10.1_rm.out414                 A--------GTTCT---GTCTCTAGAAG-ATGTGTG--------GTCTTT
GCA_000001735.2_TAIR10.1_rm.out421                 --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out430                 G------------TTCCGTCTCTGAGAA-ACATAGG--------GTCTTT
GCA_000001735.2_TAIR10.1_rm.out431                 --------------CCG-CCTCCGGAAA-ATATAGA--------GCCTTT
GCA_000001735.2_TAIR10.1_rm.out435                 A--------ATTCC---GCCTC---GGA-ATGTAGA--------ACTTTT
GCA_000001735.2_TAIR10.1_rm.out438                 T--------AGGTCCCG-CCTTTAGAAA-ATGTATG--------GTCTTT
GCA_000001735.2_TAIR10.1_rm.out440                 A--------TTCC----ATCTTGACGAC-GACG--------TA-------
GCA_000001735.2_TAIR10.1_rm.out444                 A--------TTTT----GCCTCTAAAAG-ATGA--------AAAACTTTA
GCA_000001735.2_TAIR10.1_rm.out447                 A--------TCC--T--GCTTCTCGAAC-ATAT--------AGAGCCTTC
GCA_000001735.2_TAIR10.1_rm.out450                 A--------ATCCC---GTTTTTGGAAA-ATATAAG--------ATTTTT
GCA_000001735.2_TAIR10.1_rm.out451                 A--------TCTC----CTATAATGGAA-ATAT--------AAGGTTTTC
GCA_000001735.2_TAIR10.1_rm.out453                 G--------TCCCGC--CTCTAAAAAAA-ATGT--------AGAATCTTT
GCA_000001735.2_TAIR10.1_rm.out455                 G--------ATGT----AGAGCTTTTGG-G--------------------
GCA_000001735.2_TAIR10.1_rm.out456                 G--------ATTTTT--GTTTATGAGAC-ATCT--------AAATCTTTC
GCA_000001735.2_TAIR10.1_rm.out457                 G--------TCCC----GTCTCTAGAAA-ACAT--------AAAATTCTT
GCA_000001735.2_TAIR10.1_rm.out460                 A--------TTCT----AAATTTAGGGA-AAGT--------AAAGTTTTC
GCA_000001735.2_TAIR10.1_rm.out465                 G--------GTCAT---ACCTTTAGAAG-ATGTAGG--------GCATTT
GCA_000001735.2_TAIR10.1_rm.out467                 A--------TTTT----GCTTCAGCAGA----------------------
GCA_000001735.2_TAIR10.1_rm.out468                 G--------GTCTC---GCCTCAGAGAG-ATGTAGG--------ACCTAT
GCA_000001735.2_TAIR10.1_rm.out470                 G--------TTCT----GCCTCTAGAAA-ATGT--------AAGACTTTT
GCA_000001735.2_TAIR10.1_rm.out474                 G--------AGTTCTAC--CTCTTAAAG-ATGTATC--------CCTTTC
GCA_000001735.2_TAIR10.1_rm.out478                 A--------TCC--C--GTCTTT--AAA-AAAT--------AGAGCATTT
GCA_000001735.2_TAIR10.1_rm.out481                 G------------TCGCGTTTCTAGGAG-ATATAGA--------ATTTTT
GCA_000001735.2_TAIR10.1_rm.out494                 --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out496                 --------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out500                 G--------TCTC----GCATGTAGGAA-ATGT--------AGGTCTTTT
GCA_000001735.2_TAIR10.1_rm.out515                 G--------TCCCGC--CT--CTCGGAG-ATGTAGGGC--------CTTT
GCA_000001735.2_TAIR10.1_rm.out516                 G--------TCCCGC--CT--CTGAGAA-ATGTAGGCA--------TTTG
GCA_000001735.2_TAIR10.1_rm.out526                 A------------TCCCGTCTCTAGGAG-ATGTAGG--------GTTTTC
GCA_000001735.2_TAIR10.1_rm.out536                 ----------CCC----ATCTCTAAAAA-ATAT--------AAGACCTTT
GCA_000004255.1_v.1.0_rm.out84                     G--------TCCCGC--CT--CTAGAAG-ATGTGAGGC--------TTTG
GCA_000004255.1_v.1.0_rm.out117                    G--------TTTCAC--CT--CTGAAAG-ATGTAGGGC--------CTTC
GCA_000004255.1_v.1.0_rm.out118                    G--------TCCCGTCTCTGGGAA-----ACATAAG--------ACCCTC
GCA_000004255.1_v.1.0_rm.out172                    G--------TCCCGC--CT--CTGGGAG-ATGTAGGGC--------TTTC
GCA_000004255.1_v.1.0_rm.out184                    A--------TCTCAC--CT--CTAAGAA-ATGTAGGGC--------CTCC
GCA_000004255.1_v.1.0_rm.out199                    G--------TCCCGC--TT--CTGGGAG-ATGTAGGGA--------CTTC
GCA_000004255.1_v.1.0_rm.out224                    T--------T-T-----CGTCCTGGAAGATGTACGG-------GCC----
GCA_000004255.1_v.1.0_rm.out233                    G--------ATCCC---GCCTCTGGAAA-ATGTAGG--------GCTTTC
GCA_000004255.1_v.1.0_rm.out234                    G--------TCCCGC--CT--CTGAGAG-ATGTAGGGT--------CTTC
GCA_000004255.1_v.1.0_rm.out240                    G--------TTCCGC--CT--TTGGGAG-ATGTAGGAT--------TTTT
GCA_000004255.1_v.1.0_rm.out248                    GT---------TCGC--CT--CTGGGAG-ATATATGGC--------CTTT
GCA_000004255.1_v.1.0_rm.out259                    G--------TCTCGC--CT--CTGGAAG-ATGTAGGGC--------CTTC
GCA_000004255.1_v.1.0_rm.out260                    G--------TCCCGC--TT--CTGAGAA-ATGTAGGCT---------TTT
GCA_000004255.1_v.1.0_rm.out275                    G--------TTCCGC--TT--CTGGAAG-ATGTAGGGC--------CTTC
GCA_000004255.1_v.1.0_rm.out314                    G--------TTCTGT--CT--CTTGGAG-ATGTAGGGC--------ATTC
GCA_000004255.1_v.1.0_rm.out320                    G--------TCCTGC--TT--CTGGGAG-ATGTAGGAC--------CTTC
GCA_000004255.1_v.1.0_rm.out334                    G--------ATCCC---GCCTCTAGGAG-ATATAGGGTTTTCGCCTCTTC
GCA_000004255.1_v.1.0_rm.out343                    G--------GTCTA---GTTTCTGGGAG-ACGTAGA--------GCCTTC
GCA_000004255.1_v.1.0_rm.out359                    G--------TCCCAC--CT--CTAAGAG-ATGTAGAGT--------TTTC
GCA_000004255.1_v.1.0_rm.out362                    G--------TTCCGG--CT--CTGGTAG-ATGTAAGGT--------CTTC
GCA_000004255.1_v.1.0_rm.out363                    G--------TTCCGC--AT--CTGGGAG-ATGTAGAGC--------CTTC
GCA_000004255.1_v.1.0_rm.out368                    G--------TCATGT--TT--CTGGGAG-ATGTAGGACTTTCGAACTT--
GCA_000004255.1_v.1.0_rm.out379                    A--------TCCCAC--CT--CTAAAAG-ATGTAGAGC--------ATTC
GCA_000004255.1_v.1.0_rm.out392                    G--------GTCCC---GCCTCTAAAAA-ATGTAAG--------GTTTTT
GCA_000004255.1_v.1.0_rm.out402                    G--------ATCCC---GCCTCTGAAAG-GCGTAGAGCCTTC--------
GCA_000004255.1_v.1.0_rm.out408                    A--------TCC--C--TCTT-----------------------------
GCA_000004255.1_v.1.0_rm.out415                    G--------TCCCGT--CT--CTAAAAG-ATGTATGGT--------CTTT
GCA_000004255.1_v.1.0_rm.out424                    G--------TCTCGC--AT--CTGGAAG-ATGTAGGAC--------CTTC
GCA_000004255.1_v.1.0_rm.out434                    G--------TCCCGC--TT--CTAGGAG-ATGTAGGGC--------CTTC
GCA_000004255.1_v.1.0_rm.out437                    G--------CCT-----CGTCCTGGGGGATGTACGG-------GTTCAGA
GCA_000004255.1_v.1.0_rm.out450                    G--------TCCCGC--CT--CTGGGAG-ATGTAGAGC--------TTTT
GCA_000004255.1_v.1.0_rm.out459                    G--------GTCCC---GCCTCAAAGAG-ATGTAGG--------GCCTTC
GCA_000004255.1_v.1.0_rm.out463                    A--------TCCCGC--CT--CTGGAAA-ATGTAGGATCTTCG-------
GCA_000004255.1_v.1.0_rm.out469                    A--------ATCCC---ATCTCTGAGAG-ACGTAGG--------ATCCTC
GCA_000004255.1_v.1.0_rm.out525                    A--------TCCTGC--TT--CTGGGAG-ATGTAAGGC--------CTTT
GCA_000004255.1_v.1.0_rm.out543                    G--------TCCCGT--CT--ATGAGAG-ATGTAGGAC--------CTTT
GCA_000004255.1_v.1.0_rm.out552                    --------------------------------------------------
GCA_000004255.1_v.1.0_rm.out588                    G--------TCCCGC--CT--CTGAGAG-ATATAGGTT--------CTTC
GCA_000004255.1_v.1.0_rm.out599                    G--------TCT-----CGCCCTGGGGGA-TGTACG-------GGCCTAC
GCA_000004255.1_v.1.0_rm.out613                    A--------TCT--G--CCTCTGGAAGA-CGTA--------A--AACTTT
GCA_000004255.1_v.1.0_rm.out622                    G--------GTCCC---GTCTCTGGGAG-ATGTAAA--------GCTTTC
GCA_000004255.1_v.1.0_rm.out629                    G--------GTTCC---GCCTCTAGGAG-ATGTAGA--------CCTTCA
GCA_000004255.1_v.1.0_rm.out630                    G--------GTTCC---GCCTCTAGGAG-ATGTAGA--------CCTTCG
GCA_000004255.1_v.1.0_rm.out651                    G--------CCT-----CGCTCTGGAAAATATACGG-------GTCTACG
GCA_000004255.1_v.1.0_rm.out652                    G--------TCCT----GCTTCTAGGAG-A----------------TGTA
GCA_000004255.1_v.1.0_rm.out653                    G--------TCT-----CGCCCTGGGGGA-TGTACG-------GGCCTAC
GCA_000004255.1_v.1.0_rm.out662                    G--------TCACGC--CT--CTGGAAA-ATGTAGGGC--------TTTC
GCA_000004255.1_v.1.0_rm.out678                    G--------CCT-----CGCCCTGAGGGGATGTACG--------GGCCTA
GCA_000004255.1_v.1.0_rm.out687                    A--------TCCCAT--TT--CTAAGAA-ATGTAGGGC--------CTTC
GCA_000004255.1_v.1.0_rm.out693                    --------------------------------------------------
GCA_000004255.1_v.1.0_rm.out698                    G--------CCT-----CGCCCTGAAGAATGTAAGG-------GTCTACG
GCA_000004255.1_v.1.0_rm.out708                    G--------TCCCGC--CT--CTGGGAA-ATGTAGGGC--------CTTC
GCA_000004255.1_v.1.0_rm.out712                    A--------TCTCGCCCTCTGAGAG-AA-AGGTAGG--------CCCTTC
GCA_000004255.1_v.1.0_rm.out713                    G--------GTCAC---GCCTCTAGGAG-ATGTAGGAGT--AGGGCCTTC
GCA_000004255.1_v.1.0_rm.out729                    -------------C---GCCTTTGTGAG-ATATAGT--------GTATTC
GCA_000004255.1_v.1.0_rm.out740                    A--------TCCCGC--CT--CTGGGAG-ATGTAGGGC--------CTTC
GCA_000004255.1_v.1.0_rm.out760                    G--------TTCCAC--CT--CTAAAAA-ATGTAGAGC--------TTTT
GCA_000004255.1_v.1.0_rm.out770                    G--------T----------------------------------------
GCA_000004255.1_v.1.0_rm.out774                    A--------TCCCGT--CT--CTAGGAA-ATGTAGGGC--------CTTC
GCA_000004255.1_v.1.0_rm.out791                    G------------TCCCGCCTTTGGGAG-ATGTAGG--------GCATTC
GCA_000004255.1_v.1.0_rm.out792                    CCGTGTAGGTCCTCC--CTCTGGGAGAT-GTATAGGGC--------CTTC
GCA_000004255.1_v.1.0_rm.out827                    A--------TCCCGC--CT--CTGATAG-ATGTAGGAC--------ATTC
GCA_000004255.1_v.1.0_rm.out837                    A--------TCCCAC--CT--CTGGGAG-ATGTAGAGT--------CTTC
GCA_000004255.1_v.1.0_rm.out843                    A--------ATCTC---ATTTTTAGAAA-ATGTAGG--------ATCTTT
GCA_000004255.1_v.1.0_rm.out849                    --------------------------------------------------
GCA_000004255.1_v.1.0_rm.out852                    G--------TGGG----TCCCGCCTCTG-GGA------------GATGTA
GCA_000004255.1_v.1.0_rm.out871                    --------------------------------------------------
GCA_000004255.1_v.1.0_rm.out888                    G--------CCT-----CGCCTTTGGGGA-TGTACG-------GGCCTAC
GCA_000004255.1_v.1.0_rm.out894                    --------------------------------------------------
GCA_000004255.1_v.1.0_rm.out895                    A------------TCCCGCCTCTGGGAG-ATGTAGA--------GGCTTC
GCA_000004255.1_v.1.0_rm.out906                    C--------CGG--C--CTCGCCTCTAA-GAGA-----------CATAAG
GCA_000004255.1_v.1.0_rm.out959                    G--------TCCCGT--TT--CTAGGAA-ACGTAGGGC--------TTTC
GCA_000004255.1_v.1.0_rm.out997                    A--------TCCTGT--CT--CTGGGAG-ACGTAGAAC--------CTTC
GCA_000004255.1_v.1.0_rm.out1002                   A--------TCCCGC--CT--CTGGAAG-ATGTAGGGC--------CTTC
GCA_000004255.1_v.1.0_rm.out1005                   G--------TCCCAC--CT--CTGGGAG-ATGTAGGAC--------CTTC
GCA_000004255.1_v.1.0_rm.out1006                   C----------CCGT--TTCTAGGAGAT-GTATAGAGC--------CTTC
GCA_000004255.1_v.1.0_rm.out1009                   G--------GTCCC---GCCTTTGGGAG-ATGTAGG--------GCTTTC
GCA_000004255.1_v.1.0_rm.out1033                   A--------TCCCGC--TT--CTGAGAG-ATGTAGGGC--------TTTC
GCA_000004255.1_v.1.0_rm.out1045                   G--------CTT-----CGTCCTAAGAGATGTATGG-------GCCTACG
GCA_000004255.1_v.1.0_rm.out1072                   G--------TCCCGC--CT--CTAGAAG-ATGTAGGGC--------CTTC
GCA_000004255.1_v.1.0_rm.out1126                   A--------GTCTT---GCCTACAGGAG-ATGTAGG--------GCCTTC
GCA_000004255.1_v.1.0_rm.out1132                   A--------TTC--C--GCCTCTAGGAG-ACGT-----------TCCTTC
GCA_000004255.1_v.1.0_rm.out1147                   G--------TCCTTC--CT--CTGGGAG-ATGTAAGAC--------TTTC
GCA_000004255.1_v.1.0_rm.out1187                   G--------TTCCCT--CT--CTGGGAG-ATGTAGAAC--------CTTC
GCA_000004255.1_v.1.0_rm.out1200                   G--------CCC-----TCCC-----------------------------
GCA_000004255.1_v.1.0_rm.out1215                   G--------TCCCGC--CT--CTGGAAG-ATGTAGAGC--------CTTT
GCA_000004255.1_v.1.0_rm.out1219                   G--------CCT-----CGCCCTTGGGGAATGTACG-------GGCCTAC
GCA_000004255.1_v.1.0_rm.out1251                   G--------CTT-----CGCTCTGGGGGATGTACGA-------GCTTACG
GCA_000004255.1_v.1.0_rm.out1254                   G--------CCT-----CGCCCTGGGGGGATGTATG-------GGCCTAC
GCA_000004255.1_v.1.0_rm.out1276                   G--------CCT-----CGCCCTGGGGAATGTACGG-------GGCCTAC
GCA_000004255.1_v.1.0_rm.out1287                   --------------------------------------------------
GCA_000004255.1_v.1.0_rm.out1300                   G--------TCCCGT--CT--CTGGGAG-ATGTAGGGC--------CTTC
GCA_000004255.1_v.1.0_rm.out1305                   G--------CCT-----CACCCTTGGGGGATGTACG-------GGCCTAC
GCA_000004255.1_v.1.0_rm.out1314                   --------------------------------------------------
GCA_000004255.1_v.1.0_rm.out1323                   G--------TTCCGG--CT--CTGGTAG-ATGTAAGGT--------CTTC
GCA_000523005.1_Ahal_1.0_rm.out13                  G--------TCT-----CGCCCTGGAGGATGTACGG-------GCCTCCG
GCA_000523005.1_Ahal_1.0_rm.out19                  G--------TCCCGC--CT--CTGAGAG-ATGTAGGGC--------TTTC
GCA_000523005.1_Ahal_1.0_rm.out20                  G--------CCT-----CGCCCTAAGGGGATGTACG-------GACCTTC
GCA_000523005.1_Ahal_1.0_rm.out28                  A--------TCTCGT--TT--ATGGGAG-ATGTAGGGCC--------TTC
GCA_000523005.1_Ahal_1.0_rm.out41                  G--------CCT-----CGCCCTAGGAGGATGTACG-------GGCCTAC
GCA_000523005.1_Ahal_1.0_rm.out48                  G--------TCCCGT--CT--CTGAGAG-ATGTAAAAC--------TTTC
GCA_000523005.1_Ahal_1.0_rm.out79                  A--------TCCCGC--TT--CTGGGAG-ATGTAGGGT--------CTTT
GCA_000523005.1_Ahal_1.0_rm.out80                  ---------TGAGTCTG-CTTCTGGAAA-ACGTAGA--------GCCTTT
GCA_000523005.1_Ahal_1.0_rm.out94                  G--------TCCCGC--CT--CTGGGAG-ATGTAGGGC--------CTTC
GCA_000523005.1_Ahal_1.0_rm.out104                 A--------CTC-----CGTCTTGGAAAGATATACG-------AGTATAC
GCA_000523005.1_Ahal_1.0_rm.out105                 A--------CCT-----CGCCCAGGAAGATGTACGG-------GCCTACG
GCA_000523005.1_Ahal_1.0_rm.out114                 G--------TCCCGC--CT--CTGGGAG-ATATAGGGC--------CTTC
GCA_000523005.1_Ahal_1.0_rm.out117                 G--------TCTCATCTCTGA----GAG-ATGTTGG--------ACTTTC
GCA_000523005.1_Ahal_1.0_rm.out121                 A--------TCC--C--GCCTCTAAAAG-ACGT-----------GCCTTC
GCA_000523005.1_Ahal_1.0_rm.out157                 A--------TCCCGT--TT--CTAGGAG-ATGTAGGGCATTC--------
GCA_000523005.1_Ahal_1.0_rm.out159                 G--------TCCCGT--CT--CTGGGAG-ATGTAGAGC--------CTTT
GCA_000523005.1_Ahal_1.0_rm.out160                 A--------GTCTT---GCCT-----------------------------
GCA_000523005.1_Ahal_1.0_rm.out176                 G--------TTCCGC--CT--CTGGGAG-ATGTAGGGC--------TTTC
GCA_000523005.1_Ahal_1.0_rm.out182                 C--------TCCCGCCTCTAG----GAG-ATGAAGG--------GCCCTC
GCA_000523005.1_Ahal_1.0_rm.out188                 A--------TCCCGC--CT--CTAGGAG-ATGTAGAGC--------TTTC
GCA_000523005.1_Ahal_1.0_rm.out192                 G--------TCCCGC--AT--CTAGGAG-ATGTAGGGC--------CTTC
GCA_000523005.1_Ahal_1.0_rm.out194                 G--------CCT-----CGCTCCGGGGATGTACGGG-------CCTACGA
GCA_000523005.1_Ahal_1.0_rm.out198                 G--------TCCCGC--CT--CTCGAAG-ATGCAGGGC--------TTTC
GCA_000523005.1_Ahal_1.0_rm.out201                 A--------TCCC----GCTTCTGAGAG-AT-------------------
GCA_000523005.1_Ahal_1.0_rm.out203                 A--------TCCCGC--CT--CTAGGAG-ATGTATGGT--------TTTC
GCA_000523005.1_Ahal_1.0_rm.out210                 G--------ATTCC---GCTTCTGGGAG-ATGTAGGGT--------TTTT
GCA_000523005.1_Ahal_1.0_rm.out211                 G--------TTCCGC--TT--CTGGGAA-ATGTAGGGC--------CTTC
GCA_000523005.1_Ahal_1.0_rm.out217                 T--------GAA--A--TGTAAA--------GT--------ACTTGGGTT
GCA_000523005.1_Ahal_1.0_rm.out223                 G--------TTCTGC----TTCTGGGAG-ATGCAGG--------GTCTCC
GCA_000523005.1_Ahal_1.0_rm.out236                 G--------CCT-----CGCCCTGGAAGATGTACGG-------GCCTACG
GCA_000523005.1_Ahal_1.0_rm.out251                 G--------TCTCAC--CT--CGGAGAA-ATGTAGGGC--------CTTC
GCA_000523005.1_Ahal_1.0_rm.out252                 A--------TTAA----ACTTCCAG-------------------------
GCA_000523005.1_Ahal_1.0_rm.out259                 G--------TCCCAC--CT--CCGAGAG-ATGTAGGGC--------TTTC
GCA_000523005.1_Ahal_1.0_rm.out267                 G--------TCCCGC--CT--CTGGGAG-ACGTAGGGC--------TTTC
GCA_000523005.1_Ahal_1.0_rm.out282                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out284                 A--------TCCTGC--CT--CTGGGAG-ATGTAGGGT--------CTTC
GCA_000523005.1_Ahal_1.0_rm.out291                 G--------TCT-----CGCCCTGGAGGATGTACGG-------GCCTACT
GCA_000523005.1_Ahal_1.0_rm.out305                 G--------TC---------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out323                 G--------CCT-----CGCCCTGGAGGATGTACGG-------GCCT---
GCA_000523005.1_Ahal_1.0_rm.out332                 G--------TCCCGC--CT--CTGGGAG-ATGTAGGGC--------TTTG
GCA_000523005.1_Ahal_1.0_rm.out335                 G--------GTCCC---GTTTCTAAGAG-ACGTTGG--------GTCCTC
GCA_000523005.1_Ahal_1.0_rm.out339                 G--------TCCC----GTCTCTGGGAG----------------------
GCA_000523005.1_Ahal_1.0_rm.out344                 G--------TCT-----CGCCATGAAGATATATGGA-------CC-----
GCA_000523005.1_Ahal_1.0_rm.out349                 G--------TCCCGC--GT--CCGGGAG-ATGTAGGAC--------CTTC
GCA_000523005.1_Ahal_1.0_rm.out365                 A--------TCCTGC--CT--CTGAGAA-ATGTAGGGT--------CTTC
GCA_000523005.1_Ahal_1.0_rm.out373                 G--------GTCCC---GTCTCTGGGAG-ATGTAGGGCT--TTCGCGTT-
GCA_000523005.1_Ahal_1.0_rm.out379                 G--------TCTC----GCCTCTAAGA-----------------AATATA
GCA_000523005.1_Ahal_1.0_rm.out399                 G--------TCCC----GCATCTGGGAG-AT----------------G--
GCA_000523005.1_Ahal_1.0_rm.out413                 A--------TCCCGC--CT--CTGGGAG-ATGTAGGCC--------CTTC
GCA_000523005.1_Ahal_1.0_rm.out451                 G--------TCCCGC--CT--CTGGGAT-ATGTAAGGT--------TTTC
GCA_000523005.1_Ahal_1.0_rm.out452                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out459                 A--------CCC-----TACCTTGAAAGATGTACGA-------ATCCATG
GCA_000523005.1_Ahal_1.0_rm.out460                 G--------CCT-----CGCCCTAGAGGATGTACGG-------GCCTACG
GCA_000523005.1_Ahal_1.0_rm.out491                 G--------CCT-----CGTCCTGGAGGATGTACGG-------GCCTACG
GCA_000523005.1_Ahal_1.0_rm.out504                 G--------TCCCGC--CT--CTAGGAG-ATGTAGGGC--------CTTC
GCA_000523005.1_Ahal_1.0_rm.out510                 G--------TCT-----TGCCCTGAAGGATCTACGG-------GCCTACA
GCA_000523005.1_Ahal_1.0_rm.out511                 G--------GTCTC---GCTTCTGGGAG-ATGTAAG--------ACCTTT
GCA_000523005.1_Ahal_1.0_rm.out520                 G--------TCCCGC--CT--CTGGGAG-ATGTAGGGC--------CTTC
GCA_000523005.1_Ahal_1.0_rm.out521                 G--------TCTCGC--CT--CTAGAAG-ATGTAGGAC--------TTTC
GCA_000523005.1_Ahal_1.0_rm.out524                 G--------TCTC----GCCT-----------------------------
GCA_000523005.1_Ahal_1.0_rm.out542                 G--------TCTCGC--CT--CTGGGTG-ATGTAGGGC--------TTTC
GCA_000523005.1_Ahal_1.0_rm.out543                 A--------TTCCGC--CT--CTGAGAG-ATGTAGGGT--------CTTT
GCA_000523005.1_Ahal_1.0_rm.out550                 A--------TCCTGC--CT--CTGGGAG-ATGTAGGGC--------CTTC
GCA_000523005.1_Ahal_1.0_rm.out551                 G--------TCCCGC--CT--CTGAGAG-ATGTAGGAC--------ATTT
GCA_000523005.1_Ahal_1.0_rm.out561                 G--------TCCCGT--CT--CTGGGAG-ATGTAGGGC--------CTTC
GCA_000523005.1_Ahal_1.0_rm.out565                 G--------TC---------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out566                 G------------TTCCGTCTCTGGGAG-ATGTAGG--------GCCTTC
GCA_000523005.1_Ahal_1.0_rm.out577                 G--------TTCCGC--CT--CTGGGAA-ATGTAGAAC--------TTTC
GCA_000523005.1_Ahal_1.0_rm.out584                 G--------TCCT----GCCT-----------------------------
GCA_000523005.1_Ahal_1.0_rm.out588                 G--------TCCCGT--CT--CTGAGAG-ATGTAGGGT--------CTTC
GCA_000523005.1_Ahal_1.0_rm.out589                 G--------GTCCC---GCCTCTGAGAG-ATGTAG--------GGCCTTT
GCA_000523005.1_Ahal_1.0_rm.out591                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out595                 A--------TCCTAC--CT--CCGGGAG-ATGTAGGGC--------TTTC
GCA_000523005.1_Ahal_1.0_rm.out600                 G------------GCCCCCCTCCTGGAG-ATTGAGG--------GGTTTT
GCA_000523005.1_Ahal_1.0_rm.out601                 G--------GTCCC---GCCTCTGAGAG-ATGTAG--------GGTCTTC
GCA_000523005.1_Ahal_1.0_rm.out604                 G--------TCCCGC--CT--CTGGAAG-ATGTAGGGT--------TTTC
GCA_000523005.1_Ahal_1.0_rm.out613                 G--------TTCCGT--CT--CTGGAAG-ATGTAGGAT--------CTTT
GCA_000523005.1_Ahal_1.0_rm.out617                 G--------TCCTCC--TT--CTAGGAG-ATGTAAGGC--------CTTT
GCA_000523005.1_Ahal_1.0_rm.out618                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out621                 G--------TCCCAC--CT--CTGAAAG-ATATAAGGC--------CTTC
GCA_000523005.1_Ahal_1.0_rm.out622                 G--------TCCC----GCTTCT---------------------------
GCA_000523005.1_Ahal_1.0_rm.out631                 G--------GTCTC---GCCTCTGGGAG-ATGTAGCGC--------ATTT
GCA_000523005.1_Ahal_1.0_rm.out632                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out633                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out652                 G--------TTTC----GCCTCTGGGAG-AT----------------GTA
GCA_000523005.1_Ahal_1.0_rm.out668                 A--------CCT-----TGCTCTAGAGGATATACGG-------GTCTACG
GCA_000523005.1_Ahal_1.0_rm.out672                 A--------TCT-----CGCC-----------------------------
GCA_000523005.1_Ahal_1.0_rm.out685                 G--------TCTC----GCC------------------------------
GCA_000523005.1_Ahal_1.0_rm.out695                 A--------GTCCC---GTCTCTGGGAG-ATGTAACGCT--T------TC
GCA_000523005.1_Ahal_1.0_rm.out716                 G-------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out726                 G--------CCT-----CGCCCTGGAGGATGTACGG-------GCCTACG
GCA_000523005.1_Ahal_1.0_rm.out729                 A--------TTCCGC--CT--CTGGGAG-ATGTAGGCA--------TTTG
GCA_000523005.1_Ahal_1.0_rm.out736                 G--------TCCCAC--CT--TTAGAAG-ATATAGGCC--------ATTC
GCA_000523005.1_Ahal_1.0_rm.out750                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out758                 G--------CCT-----CGCCCTGGAGGATGTACGG-------GCCTACG
GCA_000523005.1_Ahal_1.0_rm.out775                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out776                 G--------TCTCGC--CT--CTGGGAG-ATGTAGGGC--------CTTC
GCA_000523005.1_Ahal_1.0_rm.out777                 G--------TCCCGC--CT--CTAAGAG-ATGTAGGAT--------CTTC
GCA_000523005.1_Ahal_1.0_rm.out780                 G--------TCCCGC--CT--CTGGAAG-ATGTAGGAC--------CTTC
GCA_000523005.1_Ahal_1.0_rm.out825                 G------------TCCCGCCTCTAGGAG-ATGTAGG--------ACCTTC
GCA_000523005.1_Ahal_1.0_rm.out832                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out849                 G--------TTCC----GCCGCT---------------------------
GCA_000523005.1_Ahal_1.0_rm.out852                 A--------GAG--A--TAG---------------------G--GCCTTC
GCA_000523005.1_Ahal_1.0_rm.out855                 A--------TCTCGT--CT--CTGGGAG-ATGTAAGGC--------CTTC
GCA_000523005.1_Ahal_1.0_rm.out865                 A--------TCT-----CGCCCTGGAGGA-TGTACG-------GGTCTAC
GCA_000523005.1_Ahal_1.0_rm.out868                 G--------TCC--C--ACGGAA--ACG-TAGG--------ATCT---TC
GCA_000523005.1_Ahal_1.0_rm.out877                 A--------TCT-----CGCCCTAGAAAATATACGA-------GCCT---
GCA_000523005.1_Ahal_1.0_rm.out886                 G--------TCTCGC--CT--CTGGGAG-ATGTAGGGC--------CTTC
GCA_000523005.1_Ahal_1.0_rm.out897                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out902                 G-------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out908                 A--------TTCTGC--CT--CTGAGAG-ATGTAGGGC--------CTTC
GCA_000523005.1_Ahal_1.0_rm.out909                 A--------TCCCGC--CT--CTGAAAG-AAGTAGAGC--------CTTC
GCA_000523005.1_Ahal_1.0_rm.out937                 G--------TCT-----CGCCATGAGGATATATGGA-------CC-----
GCA_000523005.1_Ahal_1.0_rm.out949                 A--------TCCCGC--CT--CTAAGAG-ATGTAAGGC--------CTTC
GCA_000523005.1_Ahal_1.0_rm.out954                 G--------GCCTA---GTCTTTAAAAG-ATGTAGG--------GCTTTC
GCA_000523005.1_Ahal_1.0_rm.out956                 C--------TTTCGT--CT--CTGTAAG-ATGTAAGAC--------ATTC
GCA_000523005.1_Ahal_1.0_rm.out959                 G--------GTCCC---GCCTTTGGGAG-ATGTAGG--------GCCTTT
GCA_000523005.1_Ahal_1.0_rm.out964                 A--------TCCCGC--CT--TTGGGAG-ATGTAGGGC--------CATC
GCA_000523005.1_Ahal_1.0_rm.out965                 G--------TTCCGC--AT--CTGAGAA-ATGTAGGAC--------CTTC
GCA_000523005.1_Ahal_1.0_rm.out987                 --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1037                G--------TCCTGC--CT--TTGGGAG-ATGTAGGGT--------CTTC
GCA_000523005.1_Ahal_1.0_rm.out1040                G--------TCT-----CGTCCTAAGGGGATGTACG-------GACCTTC
GCA_000523005.1_Ahal_1.0_rm.out1047                G--------TCCC----GCTTCT---------------------------
GCA_000523005.1_Ahal_1.0_rm.out1059                G--------TCCCGC--CT--TTGGGGG-ATGTAGAAT--------CTTC
GCA_000523005.1_Ahal_1.0_rm.out1075                ---------TCCCGC--TT--CTGGGAA-ATGTAGGGC--------TTTC
GCA_000523005.1_Ahal_1.0_rm.out1084                --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1085                --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1096                A--------TCCCGC--CT--CTATGAG-ATGTAGGGC--------CTTC
GCA_000523005.1_Ahal_1.0_rm.out1100                G--------TTCTGC--CT--CTGGGAG-ATGTAAGTT--------ATTC
GCA_000523005.1_Ahal_1.0_rm.out1101                T--------TCCCGC--CT--CTTAGAG-ATGTAGGGC--------CTTC
GCA_000523005.1_Ahal_1.0_rm.out1132                A--------CCT-----TGTCCTC--------------------------
GCA_000523005.1_Ahal_1.0_rm.out1150                G--------T----------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1195                G--------TTCCGC--CT--TTGGAAG-ATGTAGGGT--------TTTC
GCA_000523005.1_Ahal_1.0_rm.out1196                G--------TCTCGC--CT--TGGGGAG-ATGTAAGGT--------TTTC
GCA_000523005.1_Ahal_1.0_rm.out1198                A--------TCCCGC--CT--CTGAAAA-ATGTAAGAC--------CTTC
GCA_000523005.1_Ahal_1.0_rm.out1199                --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1200                T---------ACTCT----TTTTGGGAG-ATGTAGG--------GCTTTC
GCA_000523005.1_Ahal_1.0_rm.out1210                ----------------------------------------------TTTC
GCA_000523005.1_Ahal_1.0_rm.out1212                G--------GTCCC---GCCTCTAGGAG-ATGTAGG--------ACTTTC
GCA_000523005.1_Ahal_1.0_rm.out1231                G--------ATCCC---GCTTCTAGGAG-ATGTAGG--------GCTTTC
GCA_000523005.1_Ahal_1.0_rm.out1239                G--------GTTCC---GCCTCTAGGAG-ATGTAGG--------GCCTTC
GCA_000523005.1_Ahal_1.0_rm.out1240                --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1254                G--------TTCCGC--CT--CTGGGAG-ATGTAGAGC--------TTTC
GCA_000523005.1_Ahal_1.0_rm.out1260                -------------C---ACATTTGGGAG-ATGTAGG--------GTATTC
GCA_000523005.1_Ahal_1.0_rm.out1289                G--------TCCCGC--CT--CTAGAAG-ATGTAGGGC--------CTTC
GCA_000523005.1_Ahal_1.0_rm.out1294                G--------TCTCGC--CT--CTGGGAG-ATATAGGGC--------TTTC
GCA_000523005.1_Ahal_1.0_rm.out1302                G--------CCT-----CGCCCTGGAGGATGTA-----------------
GCA_000523005.1_Ahal_1.0_rm.out1316                A--------TCCC----GCCTCTGAGAG----------------------
GCA_000523005.1_Ahal_1.0_rm.out1317                A--------CCT-----CGCCCTGGAAGATGTATGG-------GTCTACG
GCA_000523005.1_Ahal_1.0_rm.out1318                A--------TCCC----GCC----TTTG-AGA------------GATGTA
GCA_000523005.1_Ahal_1.0_rm.out1319                A--------TCCCGC--AT--CTGGGGG-ATGTAGGCC--------CTTC
GCA_000523005.1_Ahal_1.0_rm.out1321                G--------TTCT----GTCTCTAGGA-----------------AATACA
GCA_000523005.1_Ahal_1.0_rm.out1341                G--------TCCC----GCCCCTAGGA-----------------GATGTA
GCA_000523005.1_Ahal_1.0_rm.out1348                T--------ACCCGC--CT--CTGGGAG-ATGTAAGGT--------CTTT
GCA_000523005.1_Ahal_1.0_rm.out1349                T--------ACCCGC--CT--CTAGGAG-ATGTAAGGT--------CTTT
GCA_000523005.1_Ahal_1.0_rm.out1370                G------------TTCCGCCTCTAGGAG-ATGTAGG--------GCCTTC
GCA_000523005.1_Ahal_1.0_rm.out1371                A--------TC---------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1378                A--------TCCCAC--CT--CTGGGAG-ATGTAGAAC--------TTTC
GCA_000523005.1_Ahal_1.0_rm.out1404                G--------TCCC----GTCTCTGGGAG-AT----------------GTA
GCA_000523005.1_Ahal_1.0_rm.out1409                A--------TCCT----ACCTCTGAAAA-ATGT--------ACGGCTT--
GCA_000523005.1_Ahal_1.0_rm.out1417                G--------TTCCGC--CT--CTGGGAG-ATGTAGGGC--------TTTC
GCA_000523005.1_Ahal_1.0_rm.out1419                G--------TCTCGT--CT--ATGGGAG-ACGTAGGGC--------ACTC
GCA_000523005.1_Ahal_1.0_rm.out1420                A--------TATC----GCG----TCTG-AGA------------GATGTA
GCA_000523005.1_Ahal_1.0_rm.out1437                G--------TCTC----GCTTCGGGGAT-TT----------------A--
GCA_000523005.1_Ahal_1.0_rm.out1442                --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1448                G--------TCTC----GTTTCTGAGAG-AT----------------GTA
GCA_000523005.1_Ahal_1.0_rm.out1451                G--------TCTCGC--AT--CTAGGAG-ATGTAGGGC--------CTTC
GCA_000523005.1_Ahal_1.0_rm.out1457                G--------TCCA----GCCTCTAAGAG-A----------------TGTA
GCA_000523005.1_Ahal_1.0_rm.out1470                G--------TTCCGC--CT--CTGGGAG-ATGTGGGAC--------CTTC
GCA_000523005.1_Ahal_1.0_rm.out1472                A--------GTCCC---GCCTCTAGAAG-ACGTATG--------GACCTT
GCA_000523005.1_Ahal_1.0_rm.out1478                A------------TCCCGCCTCTGGGAG-ATGTAGG--------GCTTTC
GCA_000523005.1_Ahal_1.0_rm.out1481                G--------TCCCGT--TT--CTGGGAG-ATGTAGGGC--------TTTC
GCA_000523005.1_Ahal_1.0_rm.out1516                G--------CCT-----CGCCCTGGAGGATGTACGG-------GCCT---
GCA_000523005.1_Ahal_1.0_rm.out1582                --------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1595                G--------CCT-----CGCCCTGGAGGATGTACGG-------GCCTACG
GCA_000523005.1_Ahal_1.0_rm.out1660                G--------GTCCC---GTTTCTAGGAG-ATGTAGG--------GCTTTC
GCA_000523005.1_Ahal_1.0_rm.out1673                G--------GTCCC---GCCTCTAGGAG-ATGTAGG--------GCCTTC
GCA_000523005.1_Ahal_1.0_rm.out1677                G--------GTCCC---GTTTCTAGGAG-ATGTAGG--------GCTTTC
GCA_000523005.1_Ahal_1.0_rm.out1686                G--------GTTCC---GCCTCTAGGAG-ATGTAGG--------GCCTTC
GCA_000523005.1_Ahal_1.0_rm.out1713                G--------GTCCC---GCCTCTAGGAG-ATGTAGG--------GCCTTC
GCA_000523005.1_Ahal_1.0_rm.out1853                G--------TCCCGT--CT--TTGGAAG-AGGTAGAGC--------TTTC
GCA_000523005.1_Ahal_1.0_rm.out1854                G--------TCCCGT--CT--TTGGAAG-AGGTAGAGC--------TTTC
GCA_000523005.1_Ahal_1.0_rm.out1860                G--------TCCCGC--CTCTG----AG-AGACTACGC--------CTTC
GCA_000523005.1_Ahal_1.0_rm.out1868                G--------TCCCAC--TT--CTGGGAG-ATGTAGGGC--------CTTC
GCA_000523005.1_Ahal_1.0_rm.out1869                G--------TCT-----CGCCATGAGGATATATGGA-------CC-----
GCA_000523005.1_Ahal_1.0_rm.out1887                G--------TCTCGC--CT--CTGGGAG-ATATAGGGC--------TTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out3     G--------TCCCGC--CT--CTGGGAG-ATCCGGAGATGTAGGGCTTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out11    A--------ATCCC---GCCTCTGAGAG-ATGTAGG--------GCCTTT
GCA_902850255.1_pseudohap_a_tetraploid_rm.out20    G--------TCCCGT--CT--CTGGGAG-ATGTAGGAT--------TCTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out23    G--------TCTCGC--CT--CTGGGAG-ATGTAGGGC--------CTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out28    G--------CCT-----CGCCCTGGGGGGATATACT-------GGCCTAC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out29    G--------CCT-----CGCCCTGGGGGGATGTACG-------GGCCTGC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out44    G--------TTCCGT--CT--CTGGGAG-ATGTAGGGC--------ATTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out57    A--------GTCCC---GCCTCTAGGAG-ATGTAGGGCT--AGGGCCTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out102   G--------TCCCGC--CT--CTGGAAG-ATGTAGGGC--------ATTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out104   G--------GTGTG---GCCTCTCGAAG-ATGTAGG--------GTATTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out115   G--------TTC--------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out117   G--------TTCCGC--CT--CTGAGAG-ATGTAGGGC--------CTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out143   G--------TTT-----CGTCCTGAAAAGATGTACG-------GACTT--
GCA_902850255.1_pseudohap_a_tetraploid_rm.out183   G--------TCCCGC--AT--CTAGGAG-ATGTAGGGC--------CTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out227   A--------TCCCGC--TT--ATGGGAG-ATGTAGGGT--------TTCG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out231   G--------TCCCGC--CT--CTAGAAG-ATGTGAGGC--------TTTG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out232   G--------TTCCGC--CT--CTGGGAG-ATGTAGGAC--------TTTT
GCA_902850255.1_pseudohap_a_tetraploid_rm.out254   G--------GTTCC---GCCTCAGGAAG-ACGTAG--------GGCCTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out280   G--------GTCCC---GCTTCTAGGAG-ATGTAAT--------GCTTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out283   G--------GTCCC---GTCTCTGGGAG-ATGTAGG--------GCTTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out299   A--------TCCCGC--CT--CTGGAAG-ATATAGGGT--------CTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out317   T--------TCCGCC--T---CTGAGAG-ATGTAGTGC--------CTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out343   G--------GTCTT---GCCTCTGGGAG-ATGTAGG--------GTCTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out352   --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out353   G--------ATCCC---GCCTCTGGGAG-ATGTAG--------GGCCTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out361   G--------GTCCC---GCCTCTAGGAG-ATGTAGG--------GTCTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out362   G--------TCCCGC--TT--CTGAGAG-ATGTAAGGC--------CTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out387   G--------GTCAT---GTCTCTGGGAG-ACGTAGA--------ACCTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out414   G--------GTCCT---GTCTCTGGGAG-ACGTAGA--------ACCTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out456   GT---------TCGC--CT--CTAGGAG-ATATATGGC--------CTTT
GCA_902850255.1_pseudohap_a_tetraploid_rm.out466   G--------TCCCGC--CT--CTGGGAG-ATGTAGGGC--------CTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out469   G--------TCCCGT--CT--CTGGGAG-ATGTAGAGC--------TTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out478   --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out479   A--------TCCTGCCTGCCTCTAGGAA-ACGTAGG--------TTATTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out494   G--------TCCCGC--CT--CTGGGAG-ATGTAGGGC--------CTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out497   G--------TCCCGC--CT--CTGGGAG-ATGTAGGGC--------CTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out498   G--------GTCCC---GCCTCTGGGAG-ATGTAAG--------GCCTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out512   A--------TCCCGC--CT--CTAGGAG-ATGTAGAGC--------TTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out524   --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out557   A--------TCCCGC--CT--CTAGGAG-ACGTAGGGT--------CATC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out562   G--------ATCCC---GCCTCTGGGAG-ATGTAG--------GGCCTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out563   G--------TCCCAC--CT--CTGAAAG-ATATAGGGC--------CTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out566   A--------TTCCGC--TT--CTGGGAG-ATGTAGGGC--------ATTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out582   G--------TTCCGC--CT--CTGGAAA-ATGTAGGGT--------CTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out594   --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out597   --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out602   --------------------------------------T--AGGGCCTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out604   A--------TCC--C--GCTTTGAGGGA-CGTA--------C--TCAAA-
GCA_902850255.1_pseudohap_a_tetraploid_rm.out619   G--------TCCTGC--CT--CTAAAAG-ATATAGGGC--------TTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out655   G--------CCT-----CGTTCTAAGAGAATGTACG-------GGTCTAC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out657   G--------ATCCC---GCCTCTAGGAG-ATATAGGGTTTTCGCCTCTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out664   G--------TCT-----CGCCCTGAGGGGATGTACG-------GGCCTAC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out666   G--------TCCCGC--TT--CTGGAAG-ATGTAGGGC--------CTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out674   G--------CCT-----CGCCCTGGGGGATGTACGG-------GCCTACG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out675   G--------TCCCGC--CT--CTGGGAG-ATGTAGGTT--------TTCG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out683   G------------TCCCGTCTCTGGGAG-ACGTTGC--------GTTCTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out697   G--------TTCCGC--CT--CTGGGAG-ATGTAAGAC--------TTTT
GCA_902850255.1_pseudohap_a_tetraploid_rm.out703   G--------TTCCGC--CT--CTGGGAA-ATGTAGGAC--------TTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out709   G--------TCCCGC--CT--CTGGGAG-ATGTATGGC--------CTTT
GCA_902850255.1_pseudohap_a_tetraploid_rm.out726   --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out736   A--------TCTTGC--TT--CTGGGAG-ATGTTGGGC--------CTTT
GCA_902850255.1_pseudohap_a_tetraploid_rm.out742   G--------TCCCGC--TT--CTGAGAG-ATGTAAGGC--------CTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out745   G--------TCCCGT--CT--CTGAGAA-ATGTAGGGC--------TTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out748   G--------TCCCGT--CT--CTGGAAG-ATGTAGGGT--------CTTT
GCA_902850255.1_pseudohap_a_tetraploid_rm.out765   G--------TCCCGC--CT--CTGGGAG-ATGTAGGGC--------CTCC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out767   G--------CCT-----CGCCCTGGGGGATGTACGG-------GCATACG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out774   G--------TCTCGC--CT--CTGGGAG-ATGTAGAGC--------CTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out778   G--------CCT-----CGCCATGACGATATATGGG-------CC-----
GCA_902850255.1_pseudohap_a_tetraploid_rm.out781   G--------TCCCGC--CT--CTGGGAG-ATGTAGGGC--------CTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out784   G--------TTCCGC--CT--CTGGGAG-ATGTAGGGC--------ATTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out807   G--------TCCCGC--CT--CTGGGAG-ATGTAGGGC--------ATTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out819   G--------TCCT--------CTGGGAG-ATGTAGGAT--------CTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out840   A--------TCCCGC--CT--CTGGAAG-ATATAGGGT--------CTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out843   G--------TCCCGC--CT--CTGGGAG-ATGTAGGGC--------CTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out845   G--------TCCTGC--CT--CTAGGAG-CTGTAAGGC--------CTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out865   -----------------------------ATGTAGG--------ATTTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out886   G--------CCT-----CGCTTTAGGGGATGTACGG-------ACCTATA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out911   G--------TCCCGC--CT--CTGGGAG-ATGTAGGGC--------CTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out926   G--------GTCTC---GCCTCTGGGAA-ATGTAGG--------ACTTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out933   G--------TCTCGC--CT--TTGGGAG-ATGTAGGGC--------TTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out942   G--------CCT-----TGCCCTGGGGATGTATGGG-------CCTACGG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out948   G--------TTCCAT--CT--CTGAGAA-ATGTAGGGC--------CTTT
GCA_902850255.1_pseudohap_a_tetraploid_rm.out950   G--------TCTCGC--CT--CTGGGAG-ATGTAGGGC--------CTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out953   A--------TCCCGC--CT--CTGGGAG-ATGTAGGGCT--------TTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out968   A--------TCCC----GCCTCTAGGAG-AT----------------GTA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out970   G--------TCCCGC--CT--CTGGGAG-ATGTAGGTT--------TTCG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out976   A--------TCCC----GCCTCTGAAAG-GCGT-------AGAGCC----
GCA_902850255.1_pseudohap_a_tetraploid_rm.out993   G--------TCT-----CACCATGAGGATATATGGA-------TCC----
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1001  G--------TCCCGC--TT--CTGGGAG-ATGTAGCGT--------CTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1006  G--------GTCCC---GCCTCTGGGAG-ATGTAGA--------ACCTTT
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1026  G--------TCCCGC--CT--CTTAGAG-ACGTAAGGT--------CTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1030  G--------CTT-----CGCTCTGGGGGATGTACAG-------GCCTACG
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1050  G--------TTCCGC--CT--CTTGGAG-ATGTAAGGC--------CTTT
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1060  G--------TCCCGC--CT--CTGGGAG-ATGTAGGGC--------CTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1083  G--------TCCCAC--CT--CTGGGAG-ATGTAGGGT--------CTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1090  G--------TCCCGC--CT--CTGGGAT---GTAGGGT--------CTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1098  A--------TCCCGC--CT--CTGGGAG-AAGTAGGGC--------CTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1101  A--------CCT-----CACCCTGGGAGAATGTACG-------GGCCTAC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1108  A--------TCCCGCCCTCTGAGAG-AA-AGGTAAG--------CCCTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1124  A--------GTCTT---GCCTACAGGAG-ATGTAGG--------GCTTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1136  G--------TCCTGGCCGCCTCTGGGAG-ATGTAGA--------GCTTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1155  --------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1156  G--------TCCCGT--CT--CTGAGAG-ATGTAGGGC--------CTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1163  A--------TCTC----TCTCTCTCTCAAATGT--------AAGGTCTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1164  G--------TCCCGC--CT--CTGAGAG-ATGTAGGGC--------CTTC
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1208  G--------CTCCGC--CT--CTAGGAG-ACCTAGGAC--------CCTA

GCA_000001735.2_TAIR10.1_rm.out0                   TGGTTTGAATTTCCAAATATT----------------------------
GCA_000001735.2_TAIR10.1_rm.out7                   -------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out11                  GCGCTTGAATTTTTAAATATT----------------------------
GCA_000001735.2_TAIR10.1_rm.out12                  GGGCTTGAACTTCCAGATATTC---------------------------
GCA_000001735.2_TAIR10.1_rm.out16                  -------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out18                  ATTATTGAACTTCTAGATATT----------------------------
GCA_000001735.2_TAIR10.1_rm.out19                  GGATCTGAACTTCAAGATATT----------------------------
GCA_000001735.2_TAIR10.1_rm.out25                  GTGTCTGAACTTCCAGATTTTC---------------------------
GCA_000001735.2_TAIR10.1_rm.out33                  GGACTTGAATTTCTGAATATT----------------------------
GCA_000001735.2_TAIR10.1_rm.out34                  GCGCCTGAATTTCCAAATATT----------------------------
GCA_000001735.2_TAIR10.1_rm.out35                  GGGATTAAACTTCAAGATATTC---------------------------
GCA_000001735.2_TAIR10.1_rm.out36                  GGACCTGAACTTTTAAATATT----------------------------
GCA_000001735.2_TAIR10.1_rm.out55                  CGGCTTGAACTTCGAGATATT----------------------------
GCA_000001735.2_TAIR10.1_rm.out56                  GAATCTAAACTTCTAGATATTC---------------------------
GCA_000001735.2_TAIR10.1_rm.out61                  GGACCTGAACTTCCAGATATT----------------------------
GCA_000001735.2_TAIR10.1_rm.out65                  AGGCTTAAATTTCCAGATATT----------------------------
GCA_000001735.2_TAIR10.1_rm.out68                  -------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out70                  GGGCC--------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out73                  -------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out77                  -------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out81                  GAGCTTGAA----------------------------------------
GCA_000001735.2_TAIR10.1_rm.out85                  AGGCTTGAATTTGCAGATATTC---------------------------
GCA_000001735.2_TAIR10.1_rm.out91                  GAATTTGAACTTCTATATAT-----------------------------
GCA_000001735.2_TAIR10.1_rm.out98                  -------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out103                 ATATTTCAATTTTTATATATTC---------------------------
GCA_000001735.2_TAIR10.1_rm.out110                 -------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out116                 AGATTTGAACTTTTAGATATT----------------------------
GCA_000001735.2_TAIR10.1_rm.out119                 GAGCCTGAACTTTCAGATATT----------------------------
GCA_000001735.2_TAIR10.1_rm.out126                 GGGCCTGAACTTTCAGATATT----------------------------
GCA_000001735.2_TAIR10.1_rm.out137                 GGGTTTGAATTTCCAGATATTC---------------------------
GCA_000001735.2_TAIR10.1_rm.out143                 AAACTTGAACTTTCATATATTC---------------------------
GCA_000001735.2_TAIR10.1_rm.out149                 -------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out155                 GGGCTTGAACTTCCAGATATTC---------------------------
GCA_000001735.2_TAIR10.1_rm.out158                 GGGCTTACACTTCCAGATATTC---------------------------
GCA_000001735.2_TAIR10.1_rm.out175                 -------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out177                 GAGTTTAAATTTTTAGATATT----------------------------
GCA_000001735.2_TAIR10.1_rm.out179                 -------A-----------------------------------------
GCA_000001735.2_TAIR10.1_rm.out181                 -------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out187                 GGCT-TGAACTTCCAGATATTC---------------------------
GCA_000001735.2_TAIR10.1_rm.out216                 TTGCTTGAACTTTCAGATATT----------------------------
GCA_000001735.2_TAIR10.1_rm.out218                 GGGCTTGAACTTCCAAATATTC---------------------------
GCA_000001735.2_TAIR10.1_rm.out223                 AAATTTGAATTTCTAGATATT----------------------------
GCA_000001735.2_TAIR10.1_rm.out225                 GGGATTAAACTTCCGAATATTC---------------------------
GCA_000001735.2_TAIR10.1_rm.out228                 -------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out229                 GGATTGAAATTTTCAGATATTC---------------------------
GCA_000001735.2_TAIR10.1_rm.out231                 AGATTTGAACTTCCAGATATTC---------------------------
GCA_000001735.2_TAIR10.1_rm.out247                 GGGTTTAAACTTTTAGATATTC---------------------------
GCA_000001735.2_TAIR10.1_rm.out257                 GGACTTGCACTTCTAAATATTC---------------------------
GCA_000001735.2_TAIR10.1_rm.out261                 GGGCTTGAACTTCCATATATT----------------------------
GCA_000001735.2_TAIR10.1_rm.out263                 -------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out264                 TAGTTTGAAGTTCCATATATTC---------------------------
GCA_000001735.2_TAIR10.1_rm.out265                 GGTTTTGAACTTTTAGATATT----------------------------
GCA_000001735.2_TAIR10.1_rm.out266                 AGATTTGAACTTTCAGATATT----------------------------
GCA_000001735.2_TAIR10.1_rm.out281                 AAACTCGAATTTCCAAATA------------------------------
GCA_000001735.2_TAIR10.1_rm.out283                 AAATTTGAACTTCCAGATAT-----------------------------
GCA_000001735.2_TAIR10.1_rm.out286                 GAAGTTGAACTTCCAAAT-------------------------------
GCA_000001735.2_TAIR10.1_rm.out288                 GGGTTTGAGATTCGAGATATTC---------------------------
GCA_000001735.2_TAIR10.1_rm.out310                 GAACTTGAA----------------------------------------
GCA_000001735.2_TAIR10.1_rm.out313                 AAGTCTGAACTTCCAAATATTC---------------------------
GCA_000001735.2_TAIR10.1_rm.out315                 AGACTTAAACTTCCATATAT-----------------------------
GCA_000001735.2_TAIR10.1_rm.out319                 -------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out322                 GGGCCTGAACTTCCAGATATTC---------------------------
GCA_000001735.2_TAIR10.1_rm.out327                 GG-----------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out332                 GAGCTTGAAATTTTAGATATT----------------------------
GCA_000001735.2_TAIR10.1_rm.out341                 -------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out344                 -------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out363                 CGACTTAAACTTTCAAATATT----------------------------
GCA_000001735.2_TAIR10.1_rm.out364                 -------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out365                 GAACTTGAACTGTCAGATATTC---------------------------
GCA_000001735.2_TAIR10.1_rm.out376                 GAATTTTTAGCTTGAACTTCTAGATA-----------------------
GCA_000001735.2_TAIR10.1_rm.out377                 GGACTTGAATTTTCAGATATT----------------------------
GCA_000001735.2_TAIR10.1_rm.out383                 ---------------GATG------------------------------
GCA_000001735.2_TAIR10.1_rm.out385                 GTGTTTGAACTTCTAGA--------------------------------
GCA_000001735.2_TAIR10.1_rm.out387                 -------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out388                 GAACTTAAATTTTCAGATATT----------------------------
GCA_000001735.2_TAIR10.1_rm.out392                 AAACTTGAATTTCTAGATATT----------------------------
GCA_000001735.2_TAIR10.1_rm.out411                 AGGCTTGAACTTCGAAATATTC---------------------------
GCA_000001735.2_TAIR10.1_rm.out412                 GAGTTTGAATTTCCAGATATTC---------------------------
GCA_000001735.2_TAIR10.1_rm.out414                 GAGCTTGAACTTCCATATATTC---------------------------
GCA_000001735.2_TAIR10.1_rm.out421                 -------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out430                 GGGCCCGAACTTCCAAATATTCAAAAAAAAAAAAAATAAAAAA------
GCA_000001735.2_TAIR10.1_rm.out431                 AGACTTGAACTTCCACATACT----------------------------
GCA_000001735.2_TAIR10.1_rm.out435                 GGAGTTGAACTTCCAGATATT----------------------------
GCA_000001735.2_TAIR10.1_rm.out438                 TAACTTGAACTAACAGATATT----------------------------
GCA_000001735.2_TAIR10.1_rm.out440                 -------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out444                 GGACTTAAATTTCTAAATATT----------------------------
GCA_000001735.2_TAIR10.1_rm.out447                 GAACTTAAACTTCCATATATTC---------------------------
GCA_000001735.2_TAIR10.1_rm.out450                 GGGCTTGAATTTCTAGATAT-----------------------------
GCA_000001735.2_TAIR10.1_rm.out451                 AGAATTGAACTACCAG---------------------------------
GCA_000001735.2_TAIR10.1_rm.out453                 GGATTTGAACTTCCACATATTC---------------------------
GCA_000001735.2_TAIR10.1_rm.out455                 ---TCTGAAATTCTAGATATT----------------------------
GCA_000001735.2_TAIR10.1_rm.out456                 AGACTTGAATTTTCAAATATT----------------------------
GCA_000001735.2_TAIR10.1_rm.out457                 AAATTCTAACTTCTAAAT-------------------------------
GCA_000001735.2_TAIR10.1_rm.out460                 ATGTTTGAACTTTTAGATATTC---------------------------
GCA_000001735.2_TAIR10.1_rm.out465                 GGCCTTGAACTTCCAGATATT----------------------------
GCA_000001735.2_TAIR10.1_rm.out467                 -------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out468                 GGACTTGAACTTCC-----------------------------------
GCA_000001735.2_TAIR10.1_rm.out470                 G------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out474                 ACACTTAAATTTCCATATATT----------------------------
GCA_000001735.2_TAIR10.1_rm.out478                 GAGCTTGAACTTACATATATT----------------------------
GCA_000001735.2_TAIR10.1_rm.out481                 GGGTTTCAACTTCCAAATATTC---------------------------
GCA_000001735.2_TAIR10.1_rm.out494                 -------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out496                 -------------------------------------------------
GCA_000001735.2_TAIR10.1_rm.out500                 AATTTTGAATTTCCAAATATTC---------------------------
GCA_000001735.2_TAIR10.1_rm.out515                 AGGCCTGAACTTCCAGATATTC---------------------------
GCA_000001735.2_TAIR10.1_rm.out516                 GGCTTGAACTTCCAGATATT-----------------------------
GCA_000001735.2_TAIR10.1_rm.out526                 GATTATGAAATTCAGATATT-----------------------------
GCA_000001735.2_TAIR10.1_rm.out536                 AAATTTAAACTTCTAAATATT----------------------------
GCA_000004255.1_v.1.0_rm.out84                     GACTTGAACT-TCTAGATTTTC---------------------------
GCA_000004255.1_v.1.0_rm.out117                    GGGCTTGAACTTCCAGATATTCAAAAAAAAAAAAAA-------------
GCA_000004255.1_v.1.0_rm.out118                    GAGCTTGAACTTCCAAA--------------------------------
GCA_000004255.1_v.1.0_rm.out172                    GGGCTTGAACTTCTAGATATTC---------------------------
GCA_000004255.1_v.1.0_rm.out184                    GGGTTTGAACTTCCAGATATT----------------------------
GCA_000004255.1_v.1.0_rm.out199                    GGACTTGAACTTCTAGATATTCAAAAAAAAAAAAAAAA-----------
GCA_000004255.1_v.1.0_rm.out224                    -------------------------------------------------
GCA_000004255.1_v.1.0_rm.out233                    GGGCTTGAACTTCCAGATATTC---------------------------
GCA_000004255.1_v.1.0_rm.out234                    GGGCTTGAACTTCCAGATATTAAAAAAAAATAAAAAAAAA---------
GCA_000004255.1_v.1.0_rm.out240                    GGGGTTGAACTTCCAGATATT----------------------------
GCA_000004255.1_v.1.0_rm.out248                    GGACTTGAACTTCCAGATATTC---------------------------
GCA_000004255.1_v.1.0_rm.out259                    GGACTTGAATTTCCGGATATTC---------------------------
GCA_000004255.1_v.1.0_rm.out260                    GGGTTTGAACTTCTAGATATT----------------------------
GCA_000004255.1_v.1.0_rm.out275                    TGGCTTCAACTAGATATT-------------------------------
GCA_000004255.1_v.1.0_rm.out314                    GGGCTTGAACTTCCAGATATTCAAAAAAAAAAAAAAAA-----------
GCA_000004255.1_v.1.0_rm.out320                    GGGCTTGAACTTCCAGATATTC---------------------------
GCA_000004255.1_v.1.0_rm.out334                    GGGCTTGAATTTCTAGATATTC---------------------------
GCA_000004255.1_v.1.0_rm.out343                    GGTTTTAAACTTCCAGATACT----------------------------
GCA_000004255.1_v.1.0_rm.out359                    GGACTTGAACTTTCTGATATTC---------------------------
GCA_000004255.1_v.1.0_rm.out362                    GGGCTTGAACTTCCAGATATT----------------------------
GCA_000004255.1_v.1.0_rm.out363                    GGGCTTGAACTTCCAGATATTCAAAAAAAAAAAAAAAAAAAA-------
GCA_000004255.1_v.1.0_rm.out368                    ------GAATTTCCGGATATTC---------------------------
GCA_000004255.1_v.1.0_rm.out379                    GCGCTTGAATTTTCAGATATTC---------------------------
GCA_000004255.1_v.1.0_rm.out392                    AGGGTTGAACTTCCAGATATT----------------------------
GCA_000004255.1_v.1.0_rm.out402                    ----TTGAACTTCCATATATCC---------------------------
GCA_000004255.1_v.1.0_rm.out408                    -------------------------------------------------
GCA_000004255.1_v.1.0_rm.out415                    GGGCTTGAACTTCCAGATATT----------------------------
GCA_000004255.1_v.1.0_rm.out424                    GGGCTTGAACTTCCAGATATTCAAAAAAAAAAAAAAAAAGA--------
GCA_000004255.1_v.1.0_rm.out434                    GGGTTTGAACTTCCAGATATTC---------------------------
GCA_000004255.1_v.1.0_rm.out437                    ACCTC-CTAGTCA----------TCAAAAAAAAAAAAAAA---------
GCA_000004255.1_v.1.0_rm.out450                    GGGCTTGAACTTCCAGATATTCAAAAAAAAAAAAAAAAAAAAA-A----
GCA_000004255.1_v.1.0_rm.out459                    GGACTTGAACTTTCAGATATTC---------------------------
GCA_000004255.1_v.1.0_rm.out463                    -GGCTTGAACTTCCAAATATTC---------------------------
GCA_000004255.1_v.1.0_rm.out469                    GAACTTGAACTTCCATATATTC---------------------------
GCA_000004255.1_v.1.0_rm.out525                    CGGCTTGAACTTCCAGATATTC---------------------------
GCA_000004255.1_v.1.0_rm.out543                    GGGCTTGAACTTCCAGATATTC---------------------------
GCA_000004255.1_v.1.0_rm.out552                    -------------------------------------------------
GCA_000004255.1_v.1.0_rm.out588                    GGACTTGAACTTCCAGATATTCAAAAAAAAAAAAAAAAACAGA-A----
GCA_000004255.1_v.1.0_rm.out599                    AGGCTCAGAACCTCCTAGTCATCAAAAAAAAAAAAAAA-----------
GCA_000004255.1_v.1.0_rm.out613                    GAACTAGAACTTCCAAATATT----------------------------
GCA_000004255.1_v.1.0_rm.out622                    AGGCTTGAACTTCCAGATATTC---------------------------
GCA_000004255.1_v.1.0_rm.out629                    GATTTG-AACTTTCAGATA------------------------------
GCA_000004255.1_v.1.0_rm.out630                    GATTTG-AACTTCCAGATA------------------------------
GCA_000004255.1_v.1.0_rm.out651                    GGTTT-AGAATCTCC----------------------------------
GCA_000004255.1_v.1.0_rm.out652                    GGGCATTCG----------------------------------------
GCA_000004255.1_v.1.0_rm.out653                    AGGCTCATAACCTCCTAGTCATAAAAAAAAAGAAAAAAA----------
GCA_000004255.1_v.1.0_rm.out662                    GAGCTTGAACTTCCAGATATT----------------------------
GCA_000004255.1_v.1.0_rm.out678                    CGGGT-TCAGAACCTCCTAGTCATAAAAAAATAATAAAAAATAAA----
GCA_000004255.1_v.1.0_rm.out687                    AGCCTTGAACTTCCAAATATTC---------------------------
GCA_000004255.1_v.1.0_rm.out693                    -------------------------------------------------
GCA_000004255.1_v.1.0_rm.out698                    GAGAC-TCTGAACCTCC--------------------------------
GCA_000004255.1_v.1.0_rm.out708                    GGACTTAAACTTCCAGATATT----------------------------
GCA_000004255.1_v.1.0_rm.out712                    AAACTTGAACTTCTAGATATT----------------------------
GCA_000004255.1_v.1.0_rm.out713                    GGGCTTGAACTTCCAGATATTCAAAAAAAAAAAAAAA------------
GCA_000004255.1_v.1.0_rm.out729                    GGGCTTGAACTTCCAGATATTC---------------------------
GCA_000004255.1_v.1.0_rm.out740                    GGGCTTGAACTTCCAGATATTCAAAAAAAAAAAAAAAAAAAAA-A----
GCA_000004255.1_v.1.0_rm.out760                    ACACTTGAATTTGTAGATATTC---------------------------
GCA_000004255.1_v.1.0_rm.out770                    -------------------------------------------------
GCA_000004255.1_v.1.0_rm.out774                    GAAATTGAACTTCCAGATATT----------------------------
GCA_000004255.1_v.1.0_rm.out791                    GGGCTTGCACTTCCGGATATTC---------------------------
GCA_000004255.1_v.1.0_rm.out792                    GGGCTTGAACGTCCAAATATTC---------------------------
GCA_000004255.1_v.1.0_rm.out827                    GGGCTTGAACTTCCAGATATT----------------------------
GCA_000004255.1_v.1.0_rm.out837                    GGGGTTGAACTTCCAGATATTCAAAAAAAAAAAAAAAAAAAAA------
GCA_000004255.1_v.1.0_rm.out843                    GGGTTTGAACTTTCAAATA------------------------------
GCA_000004255.1_v.1.0_rm.out849                    -------------------------------------------------
GCA_000004255.1_v.1.0_rm.out852                    GGATCTTCGG---------------------------------------
GCA_000004255.1_v.1.0_rm.out871                    -------------------------------------------------
GCA_000004255.1_v.1.0_rm.out888                    GGGTTCAAAACCTCGTAGTCATCAAAAAAAAAAA---------------
GCA_000004255.1_v.1.0_rm.out894                    -------------------------------------------------
GCA_000004255.1_v.1.0_rm.out895                    GGGCTTGAACTTTCAGATATTAAAAAAAAAAGAAAAATAAA--------
GCA_000004255.1_v.1.0_rm.out906                    GCCCAAGAACTTTCATATATT----------------------------
GCA_000004255.1_v.1.0_rm.out959                    GGGATTGAACTTCCAGATATTC---------------------------
GCA_000004255.1_v.1.0_rm.out997                    GGGCTTGAACTTCTAGATAT-----------------------------
GCA_000004255.1_v.1.0_rm.out1002                   GGGCTTGAACTTCTAGATTTTCAAAAAAAAAAAAAAAAAAACA-A----
GCA_000004255.1_v.1.0_rm.out1005                   AGGCTTGAACTTCCAGATATTC---------------------------
GCA_000004255.1_v.1.0_rm.out1006                   AGACTTGAACTTCCGGATATTC---------------------------
GCA_000004255.1_v.1.0_rm.out1009                   GGGCTTGAACTTCCAGATATTCAAAAAAAAAAAA---------------
GCA_000004255.1_v.1.0_rm.out1033                   GGGCTTGAACTTACAGATATT----------------------------
GCA_000004255.1_v.1.0_rm.out1045                   GGATCATAACCTCC-----------------------------------
GCA_000004255.1_v.1.0_rm.out1072                   GGGTTTGAACTTCTAGATATT----------------------------
GCA_000004255.1_v.1.0_rm.out1126                   GGGCTTGAACTTCCAGATATTCAAAAAAAAAAAAAAAAAAA--------
GCA_000004255.1_v.1.0_rm.out1132                   GCGTTTGAACTTCCATATTC-----------------------------
GCA_000004255.1_v.1.0_rm.out1147                   GGGCTTGAACTTCCAGATATT----------------------------
GCA_000004255.1_v.1.0_rm.out1187                   GGGTTTGAACTTCCAGATATTCAAAAAAAAAAAAA--------------
GCA_000004255.1_v.1.0_rm.out1200                   -------------------------------------------------
GCA_000004255.1_v.1.0_rm.out1215                   AAGTTTAAATTTGCAGATATTC---------------------------
GCA_000004255.1_v.1.0_rm.out1219                   AGG-C-TAAGAACCTCCTAGTCATAAAAAAAAAAAGAAATAACAAA---
GCA_000004255.1_v.1.0_rm.out1251                   GACTCAGAACCTCCTAATAATAAAAAAAATAAAAATAAAATAAA-----
GCA_000004255.1_v.1.0_rm.out1254                   GGGCT-CAGAACCTC----------------------------------
GCA_000004255.1_v.1.0_rm.out1276                   GGGCT-CAGAACCT-CCTAATCATAAAAAAAAAAA--------------
GCA_000004255.1_v.1.0_rm.out1287                   -------------------------------------------------
GCA_000004255.1_v.1.0_rm.out1300                   GGGCTTGAACTTCCACATATTC---------------------------
GCA_000004255.1_v.1.0_rm.out1305                   GGGCT-AAGAACCT-CCTAGTCATAAAAAAAAAAAAGAAATAACAAA--
GCA_000004255.1_v.1.0_rm.out1314                   -------------------------------------------------
GCA_000004255.1_v.1.0_rm.out1323                   GGGCTTGAACTTCCAGATATT----------------------------
GCA_000523005.1_Ahal_1.0_rm.out13                  GGCTC-AAAACCT--CCTAGTCCCCAAAAAAAAAAAAAA----------
GCA_000523005.1_Ahal_1.0_rm.out19                  GGACTTGAACTTCCAGATATT----------------------------
GCA_000523005.1_Ahal_1.0_rm.out20                  GGACTCAGAACCT------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out28                  GGGCTTGAACTTCCAGGTATT----------------------------
GCA_000523005.1_Ahal_1.0_rm.out41                  GGGCT-CAGAA-CCTCCTAGTCATCAAATAAAAAAAAAAAAA-------
GCA_000523005.1_Ahal_1.0_rm.out48                  GAGCTTGAACTTTCAAATATTC---------------------------
GCA_000523005.1_Ahal_1.0_rm.out79                  GGGCTTGAACTTCCAGATATTCAAAAAAAAAAAAGAA------------
GCA_000523005.1_Ahal_1.0_rm.out80                  AGACTTGAACTTCCAGATATT----------------------------
GCA_000523005.1_Ahal_1.0_rm.out94                  GGGCTTGAACTTCCAGATATT----------------------------
GCA_000523005.1_Ahal_1.0_rm.out104                 GAGTTCTGAACCTCC----------------------------------
GCA_000523005.1_Ahal_1.0_rm.out105                 GACTC-AGAATCTCTAAA-------------------------------
GCA_000523005.1_Ahal_1.0_rm.out114                 AGACTTGAACTTCCAGATATTCAAAAAAAAAAAAAAA------------
GCA_000523005.1_Ahal_1.0_rm.out117                 GGACTTAAACTTTCAGGTATT----------------------------
GCA_000523005.1_Ahal_1.0_rm.out121                 ACGCTTGAATTTTCAGATATTC---------------------------
GCA_000523005.1_Ahal_1.0_rm.out157                 GGGTTTGAACTTCCAGATATT----------------------------
GCA_000523005.1_Ahal_1.0_rm.out159                 GGACTTGAACTTCCAGATATTC---------------------------
GCA_000523005.1_Ahal_1.0_rm.out160                 -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out176                 GGGCTTGAACTTCCCGATATTCAAAAAAAAAA-----------------
GCA_000523005.1_Ahal_1.0_rm.out182                 GGGCTTGAACTTTCAGA--------------------------------
GCA_000523005.1_Ahal_1.0_rm.out188                 CAACTTTAACTTTCAGATATT----------------------------
GCA_000523005.1_Ahal_1.0_rm.out192                 GGGCTTGAACTTCCAGATATTCAAAAAAAAAAAAAA-------------
GCA_000523005.1_Ahal_1.0_rm.out194                 GCTCA-GAACCT---CCTAGTCATCAAAAAAAAAAA-------------
GCA_000523005.1_Ahal_1.0_rm.out198                 GGGTTTGAACTTCCAGATATTC---------------------------
GCA_000523005.1_Ahal_1.0_rm.out201                 -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out203                 GGACTTGAAGTTCAGATATT-----------------------------
GCA_000523005.1_Ahal_1.0_rm.out210                 GGGCTTGAACTTCCAAA--------------------------------
GCA_000523005.1_Ahal_1.0_rm.out211                 GGGCTTGAACTTCCAGTTATTC---------------------------
GCA_000523005.1_Ahal_1.0_rm.out217                 AAACTT-------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out223                 AGGCTTGAACTTCC-----------------------------------
GCA_000523005.1_Ahal_1.0_rm.out236                 GGCTC-AGAACCTCTAG--------------------------------
GCA_000523005.1_Ahal_1.0_rm.out251                 GGGCTTGAACTTCCAGATATT----------------------------
GCA_000523005.1_Ahal_1.0_rm.out252                 -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out259                 GGGCTTGAACTTCCAGATATT----------------------------
GCA_000523005.1_Ahal_1.0_rm.out267                 GGGCTTGAACTTTCAGATATTC---------------------------
GCA_000523005.1_Ahal_1.0_rm.out282                 -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out284                 GGGCTTGAACTTCCATATATTCAAAAAAAAAAA----------------
GCA_000523005.1_Ahal_1.0_rm.out291                 GGCTC-AGAACCTCTAGTCATCAAAAAAAAAAAAA--------------
GCA_000523005.1_Ahal_1.0_rm.out305                 -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out323                 -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out332                 GACTTGA-ACTTCAAGATATTC---------------------------
GCA_000523005.1_Ahal_1.0_rm.out335                 AGGCTTGAACTTTCACATACTC---------------------------
GCA_000523005.1_Ahal_1.0_rm.out339                 -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out344                 -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out349                 GGCCTTGAACTTCTAGATATTCAAAAAAAAAAAAAA-------------
GCA_000523005.1_Ahal_1.0_rm.out365                 GGGCTTGAATTTCCTGGTATT----------------------------
GCA_000523005.1_Ahal_1.0_rm.out373                 -----TGAACTTCGAGATATTC---------------------------
GCA_000523005.1_Ahal_1.0_rm.out379                 GGACTTAAACTTCCAGATATT----------------------------
GCA_000523005.1_Ahal_1.0_rm.out399                 -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out413                 GGGCTTGAACTTCCATATATTC---------------------------
GCA_000523005.1_Ahal_1.0_rm.out451                 GGGCTTGAACTTTCAGATATTC---------------------------
GCA_000523005.1_Ahal_1.0_rm.out452                 -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out459                 AGCCATTAACCTCCTAGACAT----------------------------
GCA_000523005.1_Ahal_1.0_rm.out460                 GGCTC-AGAACCTCTAGTTATCAAAAAAAAAAAAAGA------------
GCA_000523005.1_Ahal_1.0_rm.out491                 GGCTC-AGAACCTCTAGTCATAAAAAAAAAAAAAAAGAAGA--------
GCA_000523005.1_Ahal_1.0_rm.out504                 GGGCTTGAACTTCTAGATATTCAAAAAAAAAAAAAAAAAA---------
GCA_000523005.1_Ahal_1.0_rm.out510                 GGCTC-ATAACATCTAGTCATAAAAAAAAAAAA----------------
GCA_000523005.1_Ahal_1.0_rm.out511                 GGGCTTGAACTTCCAGATATTCAAAAAAAAAAAAAAAAAAAAA-A----
GCA_000523005.1_Ahal_1.0_rm.out520                 GGGCTTGACTTCCAGGTATTC----------------------------
GCA_000523005.1_Ahal_1.0_rm.out521                 GGGCTTGAACTTCCAGATATT----------------------------
GCA_000523005.1_Ahal_1.0_rm.out524                 -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out542                 GGGCTTGAACTTCCAGATATTC---------------------------
GCA_000523005.1_Ahal_1.0_rm.out543                 GGGCTTGAACTTCCAGATATTC---------------------------
GCA_000523005.1_Ahal_1.0_rm.out550                 GGGCTTGAACTTCCAGATATTCAAAAAAAAAAAAAAGAA----------
GCA_000523005.1_Ahal_1.0_rm.out551                 GGGCTTGAACTTCCAGATATTC---------------------------
GCA_000523005.1_Ahal_1.0_rm.out561                 GGGCTTGAACTTCCAGATATT----------------------------
GCA_000523005.1_Ahal_1.0_rm.out565                 -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out566                 GGGTTTGAACTTCCAGATATTCAAAAAAAAAAAAAAAAAAAGA------
GCA_000523005.1_Ahal_1.0_rm.out577                 GGGCTTGAACTTCCAGATATTAAAAAAAAAAAAAAAAAAAAAA-A----
GCA_000523005.1_Ahal_1.0_rm.out584                 -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out588                 GGGCTTGAACTTCCAGATATTCAAAAAAAAAAAAAAAAAAACA-A----
GCA_000523005.1_Ahal_1.0_rm.out589                 GGGCTTGAACTTTCAGATATTC---------------------------
GCA_000523005.1_Ahal_1.0_rm.out591                 -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out595                 GGGCTTGAACTTCCAGATATT----------------------------
GCA_000523005.1_Ahal_1.0_rm.out600                 GGGCTTTAATTTCCAAAGATTC---------------------------
GCA_000523005.1_Ahal_1.0_rm.out601                 GGGCTTGAATTTCCAGATATTCAAAAAAAAAAAAAAAAAAAAA-A----
GCA_000523005.1_Ahal_1.0_rm.out604                 GGGCTTGAACTTCCAGATATTCAAACAAAAAAAAAAAAAAAAA-A----
GCA_000523005.1_Ahal_1.0_rm.out613                 GGGTTTGAACTTCCAAATATT----------------------------
GCA_000523005.1_Ahal_1.0_rm.out617                 GGGCTTGAACTTCCAAATATTC---------------------------
GCA_000523005.1_Ahal_1.0_rm.out618                 -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out621                 GGGCTTAAACTTCCAAATATTC---------------------------
GCA_000523005.1_Ahal_1.0_rm.out622                 -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out631                 GGACTTGAACTTCAGATATTC----------------------------
GCA_000523005.1_Ahal_1.0_rm.out632                 -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out633                 -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out652                 GG-----------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out668                 AGCTC-AAA----------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out672                 -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out685                 -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out695                 GGACTTGAACTTCCAGATATT----------------------------
GCA_000523005.1_Ahal_1.0_rm.out716                 -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out726                 GGCCC-AGAACCTCCTAGTAAAAAAAAAAAAAAAAAAAAAAA-------
GCA_000523005.1_Ahal_1.0_rm.out729                 GGCTTGAACTCCAAAT---------------------------------
GCA_000523005.1_Ahal_1.0_rm.out736                 GGACTTAAAGTTCCAGATATT----------------------------
GCA_000523005.1_Ahal_1.0_rm.out750                 -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out758                 GGC----------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out775                 -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out776                 GGGCTTGAACTTCCAGATATT----------------------------
GCA_000523005.1_Ahal_1.0_rm.out777                 TGGCTTGAACTTCCAGATATT----------------------------
GCA_000523005.1_Ahal_1.0_rm.out780                 GGGCTTGAACTTCCAGATATTCAAAAAAAAAAAAAAAAAAAAA-A----
GCA_000523005.1_Ahal_1.0_rm.out825                 GGGCTTGAACTTCCAGGTATTCAAAAAAAAAAAAAAAAAAAAA-A----
GCA_000523005.1_Ahal_1.0_rm.out832                 -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out849                 -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out852                 AGACTTGAACTT-------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out855                 GGGTTTGAACTTTCAGAT-------------------------------
GCA_000523005.1_Ahal_1.0_rm.out865                 GGGCTCAGAACCTCTAGTTATCAAAAAAATAAAAATAAAAA--------
GCA_000523005.1_Ahal_1.0_rm.out868                 GGATTTGAA----------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out877                 -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out886                 GGGCTTAAACTTCCAGATATTCAAAAAAAATAAAAAAAAA---------
GCA_000523005.1_Ahal_1.0_rm.out897                 -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out902                 -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out908                 GGGC---------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out909                 GGATTTGAACTTCCATATATCC---------------------------
GCA_000523005.1_Ahal_1.0_rm.out937                 -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out949                 GGGCTTGAACTTCCAGATATTC---------------------------
GCA_000523005.1_Ahal_1.0_rm.out954                 GGACTTGAATTTTAAGATATT----------------------------
GCA_000523005.1_Ahal_1.0_rm.out956                 GGGCTTAAACTTC------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out959                 GGGCTTGAACTTCCAGATATTCAAGAAAAGAAAAAAAAAGAAA-A----
GCA_000523005.1_Ahal_1.0_rm.out964                 GGGCTTGAACTTCCAGATATTCAAAAAAATTAAAAAAAAAATC-AAAAA
GCA_000523005.1_Ahal_1.0_rm.out965                 GAGCTTGAACTTCCAGATATT----------------------------
GCA_000523005.1_Ahal_1.0_rm.out987                 -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1037                GGGCTTGAACTTTTAGATAT-----------------------------
GCA_000523005.1_Ahal_1.0_rm.out1040                GGACTCAGAACCT------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1047                -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1059                GGGCTTGAACTTCCAGATATT----------------------------
GCA_000523005.1_Ahal_1.0_rm.out1075                GGGCTTGAACTTCCACATATTC---------------------------
GCA_000523005.1_Ahal_1.0_rm.out1084                -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1085                -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1096                GGGTTTGAACTTCCAGATATTC---------------------------
GCA_000523005.1_Ahal_1.0_rm.out1100                GGACTTGAATTTTCAGATATTC---------------------------
GCA_000523005.1_Ahal_1.0_rm.out1101                GGGCTTGAACTTCCAGGTAGTC---------------------------
GCA_000523005.1_Ahal_1.0_rm.out1132                -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1150                -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1195                GGGCTTGAACTTCCAGATATTCAAAAAAAAAAAAA--------------
GCA_000523005.1_Ahal_1.0_rm.out1196                GGGGTTGAACTTCCAGATATTC---------------------------
GCA_000523005.1_Ahal_1.0_rm.out1198                GGATTTGAAATTCCATATATTC---------------------------
GCA_000523005.1_Ahal_1.0_rm.out1199                -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1200                GGG----------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1210                GGACTTGAACTTCCAAATATT----------------------------
GCA_000523005.1_Ahal_1.0_rm.out1212                GGGCTTGAACTTCCAGATATT----------------------------
GCA_000523005.1_Ahal_1.0_rm.out1231                GGGCTTGAACTTTCAGATATTC---------------------------
GCA_000523005.1_Ahal_1.0_rm.out1239                GGGTTTAAACTTCCAGATATTC---------------------------
GCA_000523005.1_Ahal_1.0_rm.out1240                -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1254                GAATTTGAAATTCCAGATATT----------------------------
GCA_000523005.1_Ahal_1.0_rm.out1260                GGACTTGAACTTCCAGATATTC---------------------------
GCA_000523005.1_Ahal_1.0_rm.out1289                GTACTTGAACTTCTATATATTC---------------------------
GCA_000523005.1_Ahal_1.0_rm.out1294                GGGCTTGAACTTCCAGATATT----------------------------
GCA_000523005.1_Ahal_1.0_rm.out1302                -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1316                -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1317                GACT---------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1318                AGACTTTCAGAC-------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1319                GGGCTTGAACTTCCAGATATTCAAAAAAATAAAAAAAAATAAA-A----
GCA_000523005.1_Ahal_1.0_rm.out1321                GGGCTTAAATTTCTAGATATTC---------------------------
GCA_000523005.1_Ahal_1.0_rm.out1341                -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1348                GGACTTGAACTTCCAGATATT----------------------------
GCA_000523005.1_Ahal_1.0_rm.out1349                GGACTTGAACTTCCAAATATTCAAAAAAAAAAAAAAAAAA---------
GCA_000523005.1_Ahal_1.0_rm.out1370                GGCTT-GAACTTCCAGATATTCAAAAAAAAAAAAAAAAAAA--------
GCA_000523005.1_Ahal_1.0_rm.out1371                -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1378                GGGCTTGAACTTCCAGATATTC---------------------------
GCA_000523005.1_Ahal_1.0_rm.out1404                AGACC--------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1409                -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1417                GGGCTTGAACTTCCATATATTCAAAAAAGAAAAAAAAAAAAAA-A----
GCA_000523005.1_Ahal_1.0_rm.out1419                GGACTTAAACTTC------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1420                GGGCCT-------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1437                -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1442                -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1448                -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1451                GGGGTTGAACTTCCAAATATT----------------------------
GCA_000523005.1_Ahal_1.0_rm.out1457                GGGCC--------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1470                GGACTTGAACTTCCAGGTATTAAAAAAAAAAAAACAAAAAAAA-A----
GCA_000523005.1_Ahal_1.0_rm.out1472                AGACTTAAACTTCCAGATATTC---------------------------
GCA_000523005.1_Ahal_1.0_rm.out1478                GGGCTTGAACTTCCAGATATTCAAAAAAAAATAAAAAAAAAA-------
GCA_000523005.1_Ahal_1.0_rm.out1481                GGGCTTAAACTTCCAAATATTC---------------------------
GCA_000523005.1_Ahal_1.0_rm.out1516                -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1582                -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1595                GGCTC-AGAACCTCTA---------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1660                GGGCTTGAACTTCCAGATATT----------------------------
GCA_000523005.1_Ahal_1.0_rm.out1673                GGGCTTGAATTTTCAGGTATT----------------------------
GCA_000523005.1_Ahal_1.0_rm.out1677                GGGCTTGAACTTCCAGATATT----------------------------
GCA_000523005.1_Ahal_1.0_rm.out1686                GGGTTTAAACTTCCAGATATTC---------------------------
GCA_000523005.1_Ahal_1.0_rm.out1713                GGGCTTGAATTTTCAGGTATT----------------------------
GCA_000523005.1_Ahal_1.0_rm.out1853                GGACTTGAACTTCCAGATATTC---------------------------
GCA_000523005.1_Ahal_1.0_rm.out1854                GGACTTGAACTTCCAGATATTC---------------------------
GCA_000523005.1_Ahal_1.0_rm.out1860                AGACTTGAACTTCCAGATATT----------------------------
GCA_000523005.1_Ahal_1.0_rm.out1868                GGGCTTGAACTTCCAGATATTCAAAAAAAAAAAAATAA-----------
GCA_000523005.1_Ahal_1.0_rm.out1869                -------------------------------------------------
GCA_000523005.1_Ahal_1.0_rm.out1887                AGACTTGAATTTCCAAATATTC---------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out3     GGGCTTGAACTTCCAGATATT----------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out11    GTGCTTGAACTTCCAGATATTC---------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out20    GGGCTTGAACTTCCATATATT----------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out23    GGGCTTGAACTT-------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out28    GGGCT-CAGAA-CCTCCTAGTCATCAAAAAAAA----------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out29    TCAG------AACCTCCTAGTCATCAAAAAAATAAA-------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out44    GGGCTT-------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out57    GGGCTTGAACTTCCAGATATT----------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out102   GGCTTGAACTTCCAAAT-ATTCTAAAAAAAAAAAAAAAAAAAA-A----
GCA_902850255.1_pseudohap_a_tetraploid_rm.out104   GGGCTTGAACTTCCAGATATTC---------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out115   -------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out117   GGGCTTGAACTTCTAGATATTAAAAAAAAAAAAAAA-------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out143   -------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out183   GAACTTAAACTTCCAAGTA------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out227   GGCTTGAACTTACACATATT-----------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out231   GACTTGAACT-TCTAGATTTTC---------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out232   GGGGTTGAACTTTCGGATATTC---------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out254   GGACTTGAATTTCCAAATATTC---------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out280   GGATTTGAATTTCCAGATATTC---------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out283   GGACTTAGACTTCCAGATATTTGAAAAAAAAAAAAGAAAAAAA-A----
GCA_902850255.1_pseudohap_a_tetraploid_rm.out299   AGACTTGAACTTCCAGATATTCAAAAAAAAAAAAAAGA-----------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out317   GCGCTTGAACTTCCAAATATTC---------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out343   GGACTTGAACTTCTAGATATTCAAAAAAAAAAAAATAAATAA-------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out352   -------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out353   GGGCTTGAACTTCCAGATATTCAAAAAAAAAAAAAATGAAA--------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out361   GGACTTGAACTTCCAGATATTC---------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out362   GGGCTTGAACTTCCAAATATTC---------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out387   GGGCTTGAACTTCTAGATAT-----------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out414   GGGCTTGAACTTCTAGATAT-----------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out456   GGACTTGAACTTCTAGATATTC---------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out466   GGGCTTGAACTTCCAGATATTCAAAAAAAAAAAAAAAAAAATA-A----
GCA_902850255.1_pseudohap_a_tetraploid_rm.out469   GGGCTTGAACTTCCAGATATTCAAAAAAAAAAAAAAA------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out478   -------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out479   GGGCTTGAACTTCCAGATATT----------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out494   GGGCTTGAACTTCCAGATATT----------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out497   GGGCTTGAACTTCCAGATATTCAAAAAAAAAAAAAAGAGAAAG-A----
GCA_902850255.1_pseudohap_a_tetraploid_rm.out498   GGACTTGAACTTCGAGATATTC---------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out512   CAACTTTAACTTTCAGATATT----------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out524   -------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out557   AGACTTAAACTTCCAGATATTC---------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out562   GGGCTTGAACTTCCAGATATTCAAAAAAAAAAAAAAAAAAAAA-A----
GCA_902850255.1_pseudohap_a_tetraploid_rm.out563   GGGCTTGAACTTCCAGATATTCAAAAAAAAAAAAAA-------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out566   GGGCTTGAACTTCCAGATATTCAAAAAAAAAAAAAAAAAAAA-------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out582   GGGCTTGAACTTCCAAATATTCAAAAAAAATAAAAAAAAATAA-A----
GCA_902850255.1_pseudohap_a_tetraploid_rm.out594   -------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out597   -------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out602   GGGCTTGAACTTCCAAATATT----------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out604   ---CTTGAACTTCCATATATTC---------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out619   GGACTTGAACTTCCAAATATT----------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out655   GGATTCAAAACCTCC----------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out657   GGGCTTGAATTTCCATATATTC---------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out664   GGACTCAGAACCTCC----------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out666   GGGATTGAACTTCCAGATATTC---------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out674   --GGC-TCAGAACCTCCTAGTCATCAAAAATAATAATAATAATAA----
GCA_902850255.1_pseudohap_a_tetraploid_rm.out675   GGCTTGAA-CTTCCAGATATTCAAAAAAAAAAAAAAAAAAA--------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out683   AGACTTGAACTTCCACATATT----------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out697   GGGGTTGAACTTTGAGATATTC---------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out703   GGTTTAAATTTCCAGATATTC----------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out709   GGACTTGAACTTCTAGATATTC---------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out726   -------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out736   GGGCTTGAACTTCCAGATATTC---------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out742   GGGCTTGAACTTCCAGATATTCAAAAAAAAAAAATAATAATAA-A----
GCA_902850255.1_pseudohap_a_tetraploid_rm.out745   GGGCTTGAACTTCCAGATATTCAAAAAAAAAAAAAAAAAAA--------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out748   GGGCTTGAACTTCCAGATATTCAAAAAAAAAAAAAAAAA----------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out765   GGGCTTGAACTTCCAGATATTCAAAAAAAAAAAGAAAAAAAAA-A----
GCA_902850255.1_pseudohap_a_tetraploid_rm.out767   AGCTC-AGAATCTCCTAGTCATAAAAAAAAA------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out774   GGACTTGAACTTCCAGGTATTCAAAAAAAAAAAAAAAAAAAAA------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out778   -------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out781   GGGCTTGAACTTCCAGATATTAAAAAAAAAAAAAAAAAAAAAG-A----
GCA_902850255.1_pseudohap_a_tetraploid_rm.out784   GGGCTTGAACTTCCAGATATTCAAAAAAAAAAAAAAAAAAAAA-A----
GCA_902850255.1_pseudohap_a_tetraploid_rm.out807   GTGCTTGAACTTCCAAATATTCAAAAAAAAAAAAAAAAAAAAA-A----
GCA_902850255.1_pseudohap_a_tetraploid_rm.out819   GGGCTTAAACGTCCAGATATTC---------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out840   AGACTTGAACTTCCAGATATTCAAAAAAAAAAAAAAGA-----------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out843   GGGTTTGAACTTCCAGATATTCAAAAAAAAAAAAAAAAAAAA-------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out845   GTGCTTGAACTTCCAAATATTC---------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out865   GGGCTTGAACTTCCAGATATTC---------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out886   CGGGC-TCAGAACCTCCTAGTCATCAAAAAAAAAAATACTAAATAAAAA
GCA_902850255.1_pseudohap_a_tetraploid_rm.out911   GGGCTTGAACTTCTAGATATT----------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out926   GGCCTTGAACTTCCAGATATTCTTAAAAAAAAAAAAAAAA---------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out933   GGGATTGAACTTCCAGATATTCGAAAAAAAAAAAAAGAA----------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out942   GCTCA-GAACCTCCTAGTTATAAAAAAAAAAAAAA--------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out948   ACACTTGAATTTGCAGATATTC---------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out950   GGGCTTGAACTTCCAGATATTCAAAAAAAAAAAAAAACAAAAA-A----
GCA_902850255.1_pseudohap_a_tetraploid_rm.out953   GGGCTTGAACTTACAGATATT----------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out968   GAGCTTT------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out970   GGCTTG-AACTTCCAGATATTCAAAATTAAAAAAAAAAAATAA-AAA--
GCA_902850255.1_pseudohap_a_tetraploid_rm.out976   -TTCTTGAACTTCCATATATCC---------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out993   -------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1001  GGGCTTGAACTTCTAGATATTCAAAAAAAAAAACAAAAAAACA-A----
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1006  GGGCTTGAACTTCCAAA--------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1026  GGACTTGAACTTCCAGATATT----------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1030  GACTCAGAACCTCCTAATCATAAAAAAAATAAAAATAAAATAAA-----
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1050  GGGTTTGAACTTCCAAATAATCAAAAAAAAAAAAAAAAAAAAA-A----
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1060  GGGTTTGAACTTCCAAATATT----------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1083  GGATTTGAACTTCCAGATATTC---------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1090  GGGCTTGAATTTCCAGATATT----------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1098  GGGCTTGAACTTGCAGATATTCAAAAAGAAAAAAAAAAAAAAA-A----
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1101  GGGCT-TAGAACTT-CCTAGTCATCAAAAAAAAAAAAAAA---------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1108  GGACATGGACTTCCAGATATTC---------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1124  GGGCTTGAAGTTCCAGATATTCAAAAAAAAAAAAAAAAAAAAA-A----
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1136  GGGCTTGAATTTTCAGATATTC---------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1155  -------------------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1156  GGGCTTGAACTTCCAGATATTC---------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1163  GCATTTGAACTT-------------------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1164  GAGTTTCAATTTCCAGATATTC---------------------------
GCA_902850255.1_pseudohap_a_tetraploid_rm.out1208  GGGCTTGAACTTCCAGATATTC---------------------------
//
