# STOCKHOLM 1.0

#=GS    GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out0 DE    SINE
#=GS    GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1 DE    SINE
#=GS    GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out2 DE    SINE
#=GS    GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out3 DE    SINE
#=GS    GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out4 DE    SINE
#=GS    GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out5 DE    SINE
#=GS    GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out6 DE    SINE
#=GS    GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out7 DE    SINE
#=GS    GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out8 DE    SINE
#=GS    GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out9 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out10 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out11 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out12 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out13 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out14 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out15 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out16 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out17 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out18 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out19 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out20 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out21 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out22 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out23 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out24 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out25 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out26 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out27 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out28 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out29 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out30 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out31 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out32 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out33 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out34 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out35 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out36 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out37 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out38 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out39 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out40 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out41 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out42 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out43 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out44 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out45 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out46 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out47 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out48 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out49 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out50 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out51 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out52 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out53 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out54 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out55 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out56 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out57 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out58 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out59 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out60 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out61 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out62 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out63 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out64 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out65 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out66 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out67 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out68 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out69 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out70 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out71 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out72 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out73 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out74 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out75 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out76 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out77 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out78 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out79 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out80 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out81 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out82 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out83 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out84 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out85 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out86 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out87 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out88 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out89 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out90 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out91 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out92 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out93 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out94 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out95 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out96 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out97 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out98 DE    SINE
#=GS   GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out99 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out100 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out101 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out102 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out103 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out104 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out105 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out106 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out107 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out108 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out109 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out110 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out111 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out112 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out113 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out114 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out115 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out116 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out117 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out118 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out119 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out120 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out121 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out122 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out123 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out124 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out125 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out126 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out127 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out128 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out129 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out130 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out131 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out132 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out133 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out134 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out135 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out136 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out137 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out138 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out139 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out140 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out141 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out142 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out143 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out144 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out145 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out146 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out147 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out148 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out149 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out150 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out151 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out152 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out153 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out154 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out155 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out156 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out157 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out158 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out159 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out160 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out161 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out162 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out163 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out164 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out165 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out166 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out167 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out168 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out169 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out170 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out171 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out172 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out173 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out174 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out175 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out176 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out177 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out178 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out179 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out180 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out181 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out182 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out183 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out184 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out185 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out186 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out187 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out188 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out189 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out190 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out191 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out192 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out193 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out194 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out195 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out196 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out197 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out198 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out199 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out200 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out201 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out202 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out203 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out204 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out205 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out206 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out207 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out208 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out209 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out210 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out211 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out212 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out213 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out214 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out215 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out216 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out217 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out218 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out219 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out220 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out221 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out222 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out223 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out224 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out225 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out226 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out227 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out228 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out229 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out230 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out231 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out232 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out233 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out234 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out235 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out236 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out237 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out238 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out239 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out240 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out241 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out242 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out243 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out244 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out245 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out246 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out247 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out248 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out249 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out250 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out251 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out252 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out253 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out254 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out255 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out256 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out257 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out258 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out259 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out260 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out261 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out262 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out263 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out264 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out265 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out266 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out267 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out268 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out269 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out270 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out271 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out272 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out273 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out274 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out275 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out276 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out277 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out278 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out279 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out280 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out281 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out282 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out283 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out284 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out285 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out286 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out287 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out288 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out289 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out290 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out291 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out292 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out293 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out294 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out295 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out296 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out297 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out298 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out299 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out300 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out301 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out302 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out303 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out304 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out305 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out306 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out307 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out308 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out309 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out310 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out311 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out312 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out313 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out314 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out315 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out316 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out317 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out318 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out319 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out320 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out321 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out322 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out323 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out324 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out325 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out326 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out327 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out328 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out329 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out330 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out331 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out332 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out333 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out334 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out335 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out336 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out337 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out338 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out339 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out340 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out341 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out342 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out343 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out344 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out345 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out346 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out347 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out348 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out349 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out350 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out351 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out352 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out353 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out354 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out355 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out356 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out357 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out358 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out359 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out360 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out361 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out362 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out363 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out364 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out365 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out366 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out367 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out368 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out369 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out370 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out371 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out372 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out373 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out374 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out375 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out376 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out377 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out378 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out379 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out380 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out381 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out382 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out383 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out384 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out385 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out386 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out387 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out388 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out389 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out390 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out391 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out392 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out393 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out394 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out395 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out396 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out397 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out398 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out399 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out400 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out401 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out402 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out403 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out404 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out405 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out406 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out407 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out408 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out409 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out410 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out411 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out412 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out413 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out414 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out415 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out416 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out417 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out418 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out419 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out420 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out421 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out422 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out423 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out424 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out425 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out426 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out427 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out428 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out429 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out430 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out431 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out432 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out433 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out434 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out435 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out436 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out437 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out438 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out439 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out440 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out441 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out442 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out443 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out444 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out445 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out446 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out447 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out448 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out449 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out450 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out451 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out452 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out453 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out454 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out455 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out456 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out457 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out458 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out459 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out460 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out461 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out462 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out463 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out464 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out465 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out466 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out467 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out468 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out469 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out470 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out471 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out472 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out473 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out474 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out475 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out476 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out477 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out478 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out479 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out480 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out481 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out482 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out483 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out484 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out485 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out486 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out487 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out488 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out489 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out490 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out491 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out492 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out493 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out494 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out495 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out496 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out497 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out498 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out499 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out500 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out501 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out502 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out503 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out504 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out505 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out506 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out507 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out508 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out509 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out510 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out511 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out512 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out513 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out514 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out515 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out516 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out517 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out518 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out519 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out520 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out521 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out522 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out523 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out524 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out525 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out526 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out527 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out528 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out529 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out530 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out531 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out532 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out533 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out534 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out535 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out536 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out537 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out538 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out539 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out540 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out541 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out542 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out543 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out544 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out545 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out546 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out547 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out548 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out549 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out550 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out551 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out552 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out553 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out554 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out555 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out556 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out557 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out558 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out559 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out560 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out561 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out562 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out563 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out564 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out565 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out566 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out567 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out568 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out569 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out570 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out571 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out572 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out573 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out574 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out575 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out576 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out577 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out578 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out579 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out580 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out581 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out582 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out583 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out584 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out585 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out586 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out587 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out588 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out589 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out590 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out591 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out592 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out593 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out594 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out595 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out596 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out597 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out598 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out599 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out600 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out601 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out602 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out603 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out604 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out605 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out606 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out607 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out608 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out609 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out610 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out611 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out612 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out613 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out614 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out615 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out616 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out617 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out618 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out619 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out620 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out621 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out622 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out623 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out624 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out625 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out626 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out627 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out628 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out629 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out630 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out631 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out632 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out633 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out634 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out635 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out636 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out637 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out638 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out639 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out640 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out641 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out642 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out643 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out644 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out645 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out646 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out647 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out648 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out649 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out650 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out651 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out652 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out653 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out654 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out655 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out656 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out657 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out658 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out659 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out660 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out661 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out662 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out663 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out664 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out665 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out666 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out667 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out668 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out669 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out670 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out671 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out672 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out673 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out674 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out675 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out676 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out677 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out678 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out679 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out680 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out681 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out682 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out683 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out684 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out685 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out686 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out687 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out688 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out689 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out690 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out691 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out692 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out693 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out694 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out695 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out696 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out697 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out698 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out699 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out700 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out701 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out702 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out703 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out704 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out705 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out706 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out707 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out708 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out709 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out710 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out711 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out712 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out713 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out714 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out715 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out716 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out717 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out718 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out719 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out720 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out721 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out722 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out723 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out724 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out725 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out726 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out727 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out728 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out729 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out730 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out731 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out732 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out733 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out734 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out735 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out736 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out737 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out738 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out739 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out740 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out741 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out742 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out743 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out744 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out745 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out746 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out747 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out748 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out749 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out750 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out751 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out752 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out753 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out754 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out755 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out756 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out757 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out758 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out759 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out760 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out761 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out762 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out763 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out764 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out765 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out766 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out767 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out768 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out769 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out770 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out771 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out772 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out773 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out774 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out775 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out776 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out777 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out778 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out779 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out780 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out781 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out782 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out783 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out784 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out785 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out786 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out787 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out788 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out789 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out790 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out791 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out792 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out793 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out794 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out795 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out796 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out797 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out798 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out799 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out800 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out801 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out802 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out803 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out804 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out805 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out806 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out807 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out808 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out809 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out810 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out811 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out812 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out813 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out814 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out815 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out816 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out817 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out818 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out819 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out820 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out821 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out822 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out823 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out824 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out825 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out826 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out827 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out828 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out829 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out830 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out831 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out832 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out833 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out834 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out835 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out836 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out837 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out838 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out839 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out840 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out841 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out842 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out843 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out844 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out845 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out846 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out847 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out848 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out849 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out850 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out851 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out852 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out853 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out854 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out855 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out856 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out857 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out858 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out859 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out860 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out861 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out862 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out863 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out864 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out865 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out866 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out867 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out868 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out869 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out870 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out871 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out872 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out873 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out874 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out875 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out876 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out877 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out878 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out879 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out880 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out881 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out882 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out883 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out884 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out885 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out886 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out887 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out888 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out889 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out890 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out891 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out892 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out893 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out894 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out895 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out896 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out897 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out898 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out899 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out900 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out901 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out902 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out903 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out904 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out905 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out906 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out907 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out908 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out909 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out910 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out911 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out912 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out913 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out914 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out915 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out916 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out917 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out918 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out919 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out920 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out921 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out922 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out923 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out924 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out925 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out926 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out927 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out928 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out929 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out930 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out931 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out932 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out933 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out934 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out935 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out936 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out937 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out938 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out939 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out940 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out941 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out942 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out943 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out944 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out945 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out946 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out947 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out948 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out949 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out950 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out951 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out952 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out953 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out954 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out955 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out956 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out957 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out958 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out959 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out960 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out961 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out962 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out963 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out964 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out965 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out966 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out967 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out968 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out969 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out970 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out971 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out972 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out973 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out974 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out975 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out976 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out977 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out978 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out979 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out980 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out981 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out982 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out983 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out984 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out985 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out986 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out987 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out988 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out989 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out990 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out991 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out992 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out993 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out994 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out995 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out996 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out997 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out998 DE    SINE
#=GS  GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out999 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1000 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1001 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1002 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1003 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1004 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1005 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1006 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1007 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1008 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1009 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1010 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1011 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1012 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1013 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1014 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1015 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1016 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1017 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1018 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1019 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1020 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1021 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1022 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1023 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1024 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1025 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1026 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1027 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1028 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1029 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1030 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1031 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1032 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1033 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1034 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1035 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1036 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1037 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1038 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1039 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1040 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1041 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1042 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1043 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1044 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1045 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1046 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1047 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1048 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1049 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1050 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1051 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1052 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1053 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1054 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1055 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1056 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1057 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1058 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1059 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1060 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1061 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1062 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1063 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1064 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1065 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1066 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1067 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1068 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1069 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1070 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1071 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1072 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1073 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1074 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1075 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1076 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1077 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1078 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1079 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1080 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1081 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1082 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1083 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1084 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1085 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1086 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1087 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1088 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1089 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1090 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1091 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1092 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1093 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1094 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1095 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1096 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1097 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1098 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1099 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1100 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1101 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1102 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1103 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1104 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1105 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1106 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1107 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1108 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1109 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1110 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1111 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1112 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1113 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1114 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1115 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1116 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1117 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1118 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1119 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1120 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1121 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1122 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1123 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1124 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1125 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1126 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1127 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1128 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1129 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1130 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1131 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1132 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1133 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1134 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1135 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1136 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1137 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1138 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1139 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1140 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1141 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1142 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1143 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1144 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1145 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1146 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1147 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1148 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1149 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1150 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1151 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1152 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1153 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1154 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1155 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1156 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1157 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1158 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1159 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1160 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1161 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1162 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1163 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1164 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1165 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1166 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1167 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1168 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1169 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1170 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1171 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1172 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1173 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1174 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1175 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1176 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1177 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1178 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1179 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1180 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1181 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1182 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1183 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1184 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1185 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1186 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1187 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1188 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1189 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1190 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1191 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1192 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1193 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1194 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1195 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1196 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1197 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1198 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1199 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1200 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1201 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1202 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1203 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1204 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1205 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1206 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1207 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1208 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1209 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1210 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1211 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1212 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1213 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1214 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1215 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1216 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1217 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1218 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1219 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1220 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1221 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1222 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1223 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1224 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1225 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1226 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1227 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1228 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1229 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1230 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1231 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1232 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1233 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1234 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1235 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1236 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1237 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1238 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1239 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1240 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1241 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1242 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1243 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1244 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1245 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1246 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1247 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1248 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1249 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1250 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1251 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1252 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1253 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1254 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1255 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1256 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1257 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1258 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1259 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1260 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1261 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1262 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1263 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1264 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1265 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1266 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1267 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1268 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1269 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1270 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1271 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1272 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1273 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1274 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1275 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1276 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1277 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1278 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1279 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1280 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1281 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1282 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1283 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1284 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1285 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1286 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1287 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1288 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1289 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1290 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1291 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1292 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1293 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1294 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1295 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1296 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1297 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1298 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1299 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1300 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1301 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1302 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1303 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1304 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1305 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1306 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1307 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1308 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1309 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1310 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1311 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1312 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1313 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1314 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1315 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1316 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1317 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1318 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1319 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1320 DE    SINE
#=GS GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1321 DE    SINE

GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out0     --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1     --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out2     --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out3     ------------------A------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out4     --------------------------------------------GTGAAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out5     --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out6     --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out7     --------GAAGTGAACTG------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out8     --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out9     --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out10    -----GTGAATTGAGCCTGA------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out11    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out12    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out13    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out14    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out15    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out16    -----GTGAACTAAGCATA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out17    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out18    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out19    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out20    ------------------AGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out21    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out22    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out23    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out24    -----GTGAACTCA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out25    -----GTGAACCGACTCTA------------------------------C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out26    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out27    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out28    -------------TGAGCT------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out29    -----GCGAACTG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out30    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out31    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out32    --------AAATGAGCCTC------------------------------C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out33    ------TGAACTGAGCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out34    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out35    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out36    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out37    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out38    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out39    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out40    -------AACTAATAT----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out41    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out42    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out43    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out44    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out45    -----GTGAACTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out46    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out47    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out48    -----GTGAACTGAGC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out49    -----------GAGTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out50    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out51    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out52    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out53    -----GCGAACTG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out54    -----GCGAACTG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out55    -----GCGAACTG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out56    -----GTGAACCGAGCTTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out57    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out58    -------------------------------------TCGTGATGCGAAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out59    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out60    -----GTGAATTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out61    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out62    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out63    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out64    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out65    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out66    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out67    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out68    -----GCGAACCAAGCCTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out69    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out70    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out71    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out72    ------TGAACTGTGCTTA------------------------------T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out73    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out74    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out75    -----GTGAACTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out76    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out77    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out78    ------GTGAAATGAGCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out79    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out80    -----GCGAACTG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out81    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out82    ------TGAACTGAGCGTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out83    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out84    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out85    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out86    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out87    -GCGAACTGATCCTAGCTAGG-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out88    -----GCGAACTGAGCCTAT------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out89    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out90    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out91    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out92    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out93    -----GCGAACTGAGCCTA------------------------------T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out94    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out95    -----GCGAACTG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out96    -----GCGAATTGAGTCCA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out97    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out98    -----GTGAACTGAGCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out99    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out100   -----GTGAACTGAGCGTA------------------------------C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out101   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out102   -----GCGAACTGAACTTAT------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out103   -----GTGAACTGAGC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out104   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out105   -------------A------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out106   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out107   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out108   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out109   -----GCGAAGTGAGCTAC------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out110   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out111   ------------------------------------TGGTTACTCCCGGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out112   -----GCGAACTG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out113   ----------------CTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out114   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out115   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out116   ----------CTGAGCGTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out117   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out118   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out119   -----GTGAACTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out120   -----GTGAACTAAGCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out121   -----GTGAACCGAGCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out122   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out123   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out124   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out125   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out126   -----GTGAACCGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out127   -----GTGAACTGAGG----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out128   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out129   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out130   ------TGAACCGAGCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out131   --------GTGAACTG----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out132   -----GCGAACTG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out133   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out134   -----GCGAATTGAGCGTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out135   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out136   -----GCGAACTGAGCGTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out137   -----GCGAACTGGGCCTAAC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out138   ------TGAACTGAGC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out139   ------------------------------------------------AG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out140   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out141   --------AAGTGAGTGTAGC----------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out142   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out143   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out144   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out145   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out146   ------------GA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out147   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out148   -----GTGAATTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out149   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out150   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out151   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out152   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out153   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out154   -----GTGAACTGAGC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out155   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out156   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out157   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out158   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out159   --------------------------------TGGTTTCTTGTGGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out160   -----GCGAATTGAGCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out161   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out162   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out163   -----GTGAACTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out164   -----GTGAACTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out165   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out166   ----------GAAGTG----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out167   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out168   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out169   -----GCGAACTG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out170   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out171   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out172   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out173   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out174   -----GTGAACTGAGC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out175   -----GTGAATTGAGCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out176   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out177   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out178   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out179   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out180   -----GTGAACTGAGCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out181   -----GTGAACTGAAAGTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out182   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out183   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out184   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out185   -----GTGAACTGAGCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out186   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out187   -----GTGAACTGAGCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out188   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out189   -----GTGAACTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out190   -----GCGAACTG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out191   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out192   -----GCGAACTAAGCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out193   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out194   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out195   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out196   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out197   --------AACTAAACGCA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out198   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out199   --------AACTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out200   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out201   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out202   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out203   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out204   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out205   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out206   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out207   -----GTGAACTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out208   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out209   -----GTGAGCCTAGCTTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out210   -----GTGAACTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out211   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out212   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out213   -----GTGACCTGG------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out214   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out215   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out216   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out217   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out218   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out219   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out220   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out221   ----------CTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out222   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out223   -----GTGAACTAAGCCTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out224   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out225   -----GTGAACTCAGCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out226   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out227   -------GAACAGAGTGTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out228   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out229   ------------------------------------------C-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out230   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out231   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out232   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out233   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out234   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out235   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out236   -----GTCAAGTGAGCCTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out237   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out238   -----GTGAACTGAGCCTA------------------------------T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out239   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out240   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out241   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out242   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out243   ------------------A------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out244   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out245   -----GTGAACCGAGCCTT------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out246   --------AACTGAGCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out247   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out248   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out249   -----GTGAACTGAGTCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out250   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out251   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out252   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out253   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out254   -----GCGAACTG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out255   -----GCGAACTGAGTCTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out256   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out257   --------------------------------------------GTGAAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out258   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out259   -----GCGAACTGAGTCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out260   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out261   ------TGAACTAAGCGTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out262   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out263   -----GTGAACTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out264   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out265   -----GCGAATTGAGCCTA------------------------------C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out266   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out267   --------------AGTTC------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out268   -----GTGAACTGAGCCTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out269   -----GTGAACCGA--GTT------------------------------T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out270   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out271   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out272   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out273   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out274   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out275   -----GTGAACTCAGCATA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out276   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out277   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out278   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out279   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out280   -----GTGAACCTAGCCTA------------------------------T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out281   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out282   -----GCGAACTGAGTG---------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out283   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out284   -----GTGAACTGAATGCA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out285   -----GCGAATTG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out286   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out287   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out288   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out289   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out290   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out291   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out292   -----GCGAGCTGTATGTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out293   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out294   -----GTGAACTGAGCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out295   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out296   -----------TGAAC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out297   -----GCGAACTG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out298   -----GTGAACTGAGCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out299   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out300   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out301   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out302   -----GTGAACTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out303   -----GCGAACTGAGCGTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out304   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out305   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out306   -----------GTGAACTG------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out307   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out308   ------------------A------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out309   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out310   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out311   -----GTGAACTGAGTCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out312   -----GTGAAATGAGCCTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out313   -----GTGAACCGAGTCTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out314   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out315   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out316   -----GTGAACTGAGC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out317   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out318   -------GAACTGAGCCTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out319   -----GTGAACTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out320   -----GTGAACTGAGC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out321   -----GTGAACTAAGCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out322   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out323   -----GTGAATTGAGCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out324   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out325   -----------------TA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out326   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out327   -----------TGAGCCTA------------------------------T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out328   -----GCGAACTGAGC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out329   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out330   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out331   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out332   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out333   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out334   -----GTGAACTGAGCCTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out335   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out336   -----GCGAACTG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out337   --------------------------------------------GTGGAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out338   ------GTGAACTGATCAT------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out339   -----GCGAACCG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out340   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out341   -----GTGAATTGAGCCTG------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out342   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out343   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out344   --------AACTGAGCATAG------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out345   ----GTGAACTGAGCCTAG------------------------------C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out346   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out347   -----GCGAACCG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out348   -------GAACTG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out349   -----GCGAACCGAGCGTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out350   -----GTGAACCTA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out351   --------AACTG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out352   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out353   --------------------A----------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out354   ------GCGAACTGACCAA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out355   -----GTGAACTGTGTCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out356   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out357   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out358   -----------------TA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out359   -------GAACCGAGCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out360   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out361   -----GCGAACTGAGCCTA------------------------------T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out362   -----------AGACTATGC------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out363   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out364   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out365   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out366   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out367   -----GTAAACTGAACCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out368   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out369   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out370   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out371   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out372   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out373   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out374   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out375   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out376   -----GCGAATTAGGCGTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out377   -----GCGAACTG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out378   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out379   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out380   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out381   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out382   -------GAATTGAACGTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out383   ----GTGAACTGAG------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out384   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out385   -----GCGAACTGAGCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out386   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out387   -------------AGGCTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out388   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out389   -----------GCGAACTG------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out390   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out391   -----GTGAACTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out392   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out393   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out394   -----GTGAACTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out395   ----GCGAACTGA-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out396   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out397   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out398   -----GCGAACCA-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out399   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out400   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out401   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out402   ---------ATTAAGC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out403   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out404   --------------------------------TGGTTATTTGTGGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out405   -----GTGAATTGTGCGTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out406   -----GCGAACTGAGCGTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out407   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out408   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out409   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out410   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out411   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out412   -----GTGAACCGAGCGTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out413   -----------------TA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out414   -----GTGAACTCAGT----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out415   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out416   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out417   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out418   -----GTGAACCGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out419   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out420   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out421   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out422   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out423   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out424   -------------AGCCTAAC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out425   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out426   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out427   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out428   -----GTGAACTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out429   -------------------------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out430   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out431   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out432   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out433   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out434   -------------------------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out435   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out436   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out437   -------------------------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out438   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out439   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out440   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out441   -----GTGAACTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out442   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out443   ------TGAACTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out444   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out445   -----GCGAACTGATCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out446   -----GCGAATTGAGTCTAG------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out447   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out448   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out449   -----GTGAACTGAGC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out450   ------GCGAACT-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out451   -----GCGAACTG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out452   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out453   -----------TAAGCGTAT------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out454   -----GTGAACTGATC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out455   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out456   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out457   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out458   -----GTGAACTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out459   -----GTGAACTGAGCTTA------------------------------C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out460   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out461   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out462   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out463   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out464   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out465   --------AATTGAGCATA------------------------------C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out466   -----GCGAATTGAGCGTACCTTAGGTGT---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out467   ------GTTAACTGAGCGA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out468   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out469   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out470   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out471   -----GCGAGCTGAGCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out472   -------GAACTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out473   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out474   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out475   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out476   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out477   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out478   --------AACTAAGCGTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out479   -----GTGAACTA-----A------------------------------T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out480   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out481   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out482   -----GCGAACTGAGCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out483   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out484   -----GTGAACTGAGCATA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out485   ------TGAACTGAGCCTA------------------------------C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out486   -----GCGAACTCA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out487   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out488   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out489   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out490   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out491   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out492   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out493   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out494   -----GTGAACTGAGC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out495   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out496   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out497   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out498   -----GTGAACTAAGACTA------------------------------C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out499   -----GTGAACTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out500   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out501   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out502   ------TGTACTGAACCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out503   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out504   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out505   -----GTGAACTGAGCCTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out506   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out507   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out508   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out509   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out510   -----GTGAACTAAGT----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out511   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out512   -----GTGAACTAAGCCTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out513   -------------AGCCAAA------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out514   ------TGAACTATGTGTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out515   -----GTGAACTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out516   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out517   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out518   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out519   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out520   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out521   -----GTGAACTGAGCATA------------------------------C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out522   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out523   -----GTGAACTTCCC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out524   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out525   -------GAACTGAGCCTA------------------------------T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out526   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out527   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out528   -----------------TAAC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out529   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out530   -----GTGAACTGAGCCTA------------------------------T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out531   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out532   -----GCGGACTGAGCCTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out533   -----GTGAACCAATCGTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out534   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out535   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out536   -----GTGAGCTGAGCGTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out537   --------AACCGAGCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out538   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out539   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out540   -------------------------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out541   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out542   -------------------------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out543   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out544   -------GAACTGAGCCTAA------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out545   -----------------GA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out546   -----GTGAACTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out547   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out548   -----GCGAACTGAGCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out549   -----GTGAACTG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out550   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out551   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out552   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out553   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out554   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out555   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out556   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out557   -------------GCGAACTG-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out558   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out559   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out560   -------------AGCGTC------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out561   -------------TATCTCAG-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out562   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out563   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out564   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out565   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out566   -----GTGAACTAA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out567   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out568   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out569   -----GCGAACTGAGCCTTG------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out570   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out571   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out572   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out573   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out574   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out575   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out576   --------AACTGAGCTTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out577   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out578   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out579   ------------------A------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out580   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out581   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out582   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out583   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out584   -----GTGAACTGACCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out585   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out586   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out587   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out588   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out589   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out590   -----GTGAACTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out591   -----GTGAACTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out592   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out593   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out594   ------TGACCTAAGCCTT------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out595   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out596   -----GTGAACTGAGC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out597   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out598   -----GCGAACTGAGCGTAGGTCAGGTGGT--TGGTTTCTTGTGGTGGAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out599   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out600   --------------------------------------GT----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out601   -----GTGAACTGATC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out602   --------AACTGAGCGTAGTTCAGGTGGGTGTGGTTCTTTGTGGTGGAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out603   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out604   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out605   -----------TGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out606   -----GTGAACTGAGC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out607   -----GTGAACTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out608   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out609   -------------------------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out610   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out611   -----GTGAACTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out612   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out613   -----GTGTACTGAGC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out614   -----GTGAACTGAGTTTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out615   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out616   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out617   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out618   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out619   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out620   -----GTGAACTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out621   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out622   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out623   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out624   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out625   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out626   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out627   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out628   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out629   -----GTGAACTTAGCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out630   -----GTGAACCGACCCTA------------------------------T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out631   ---------AATTGGCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out632   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out633   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out634   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out635   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out636   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out637   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out638   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out639   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out640   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out641   -----------TGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out642   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out643   -----GTGAACTGAGCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out644   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out645   --------------------------------------------GCGAAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out646   ------TGAACTGAGT----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out647   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out648   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out649   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out650   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out651   ------TGAACTGAGCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out652   -----GTGAACTGAGC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out653   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out654   --------AACTGAAACTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out655   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out656   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out657   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out658   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out659   -----GTGAAGTGATCCTA------------------------------T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out660   ------------AACCGAG------------------------------C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out661   --------AATTGAGCGTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out662   -----GTGAACTGAGCGTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out663   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out664   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out665   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out666   -----GTGAACTGAGC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out667   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out668   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out669   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out670   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out671   -----GTGAACTGAGC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out672   -----GTGAACTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out673   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out674   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out675   ----------------TGA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out676   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out677   ------TGAACGGAGA----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out678   --------------GTGAA------------------------------C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out679   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out680   --------AATTGAGCGTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out681   -----------TGGGCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out682   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out683   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out684   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out685   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out686   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out687   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out688   -----------TGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out689   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out690   --------------------A----------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out691   --------AACTGAGCCTAA------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out692   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out693   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out694   -----GCGAACTGATCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out695   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out696   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out697   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out698   -----GCGAACTGAGCGTAGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out699   -----GCGGACTG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out700   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out701   -----GTGAACTGAGC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out702   -----GCGAACGGAGCCTAC------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out703   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out704   -----GTGAACTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out705   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out706   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out707   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out708   -----GTGAACTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out709   ------TAAACTGAGCGTAA------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out710   -----GTGAACTGAGCCTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out711   -----GTGAATTGAGTGTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out712   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out713   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out714   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out715   -----GTCAACTGAGCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out716   -----GTGAACGGAGC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out717   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out718   -------------AACTTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out719   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out720   -----GCGAACTGAGACTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out721   -------------AGCATA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out722   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out723   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out724   --------GTGAACGCGTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out725   -----GCGAACTG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out726   -------GAACTGAGGGTAGCTTAG-------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out727   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out728   -----------TGAGCGTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out729   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out730   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out731   -----GCGAACTGAGCATAAC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out732   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out733   ------TGAAACGAGCCAA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out734   -------GAACTG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out735   -----GTGAACTCAGCCTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out736   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out737   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out738   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out739   -----GTGAAGTGAGCATA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out740   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out741   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out742   -----GTGAACCGAGCGTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out743   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out744   -----GTAAACTGAGA----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out745   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out746   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out747   -----GTGAACTGAGCCTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out748   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out749   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out750   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out751   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out752   -----GCGAACTG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out753   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out754   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out755   -----GCGAACTGAACCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out756   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out757   -----GTGAACTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out758   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out759   -----GTGAACTGG------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out760   -----GTGAACTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out761   -----GTCAACTAAGCATA------------------------------C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out762   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out763   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out764   ------TGAACTGAGC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out765   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out766   -----GTGAACTGAGC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out767   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out768   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out769   ----------GCGAACCGA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out770   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out771   ------TGAACTGAGC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out772   -----GCGAACTGAAATTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out773   -----GTGAATTGAGTCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out774   ---------GAACTGAGTG------------------------------C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out775   -----GCGAACTGAGACTA------------------------------C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out776   -----GCGAACTG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out777   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out778   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out779   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out780   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out781   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out782   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out783   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out784   --------AACTGGGC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out785   -------GAAGTGAGCACA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out786   -----------TGAGC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out787   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out788   -----------TGGGCGTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out789   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out790   -------GAACTGAGC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out791   -----GTGAACTGAGCCTA------------------------------C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out792   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out793   -----GCGAACTG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out794   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out795   -----GTGAACTGAGT----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out796   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out797   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out798   -----GCGAACTG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out799   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out800   -----GTGAACTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out801   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out802   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out803   -----GCGAACTAAGCGTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out804   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out805   --------------GT----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out806   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out807   ------TGAATTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out808   -----GTGAACTGAGT----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out809   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out810   ------------GA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out811   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out812   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out813   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out814   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out815   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out816   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out817   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out818   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out819   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out820   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out821   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out822   ------TGAACTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out823   -----GCGAATTG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out824   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out825   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out826   ------TGAAGTGAGCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out827   -----GTGAACCGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out828   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out829   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out830   -----------------------------------------------AAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out831   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out832   -----GTGAATTGAGCTTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out833   ----------------------------------------------GAAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out834   ----------GTGAACTGA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out835   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out836   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out837   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out838   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out839   -----GTGAACTGCGA----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out840   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out841   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out842   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out843   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out844   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out845   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out846   -----GTGAGCTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out847   -----GTGAACTGAGCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out848   -----GTGAACTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out849   -----GCGAACTG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out850   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out851   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out852   -----GTGGACTTACCCTA------------------------------T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out853   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out854   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out855   -----GCGAACTGAGCATA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out856   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out857   -----GTGAACTGAGCCTA------------------------------T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out858   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out859   --------GTGAAAGGCTA------------------------------C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out860   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out861   --------------GCGTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out862   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out863   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out864   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out865   --------GTGAACTG----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out866   ------------------GCG----------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out867   -------------AACTAA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out868   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out869   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out870   -----GCGAACTGAGTCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out871   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out872   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out873   -----GCGAACTGAGCCTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out874   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out875   -----GCGAACTGAGCCTAAC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out876   -----GCGAACTG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out877   -----GTGAACTG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out878   -----GTGAACTGAGCTTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out879   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out880   -----------------TA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out881   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out882   -----GTGAACTGAAAATA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out883   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out884   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out885   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out886   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out887   -----GCGAAATGAGACTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out888   -----GTGAACTGAGCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out889   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out890   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out891   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out892   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out893   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out894   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out895   -------GAACTGA----G------------------------------C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out896   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out897   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out898   -----GTGAACCGAAC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out899   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out900   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out901   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out902   -----GTGAACTGAGCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out903   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out904   -----GTGAACTGAGG----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out905   -------------------------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out906   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out907   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out908   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out909   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out910   --------AACTGAGCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out911   --------------------------------------------GTGAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out912   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out913   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out914   -------GTGAACT------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out915   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out916   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out917   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out918   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out919   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out920   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out921   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out922   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out923   ---------------CCTA------------------------------C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out924   --------------GCCTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out925   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out926   -----GTGAAATGAGCATA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out927   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out928   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out929   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out930   -----GCGAACTG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out931   -----GTGAATTGAGTCTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out932   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out933   -----GCGAACTG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out934   -----GTGAACTGAAC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out935   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out936   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out937   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out938   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out939   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out940   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out941   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out942   -----GCGAACTGAGCCTAG------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out943   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out944   -----GCGAACTGAGCGTAGT----------------------------T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out945   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out946   -----GTGAACTGAGCCTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out947   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out948   -----GCGAACTGAGCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out949   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out950   -----GTGAACCGAGT----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out951   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out952   -----GTGAACCGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out953   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out954   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out955   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out956   -----GCGAACTGAGTGTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out957   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out958   ----------------GTG------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out959   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out960   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out961   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out962   ----------------------------------------------GAAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out963   --------AACTA-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out964   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out965   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out966   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out967   -----GTGAATTGAGCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out968   -----GTGAACTGAGCCTG------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out969   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out970   -----GTGAACTGAGCTTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out971   -----GTGAACTGAGC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out972   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out973   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out974   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out975   ------TGAACTGAGTCTA------------------------------T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out976   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out977   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out978   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out979   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out980   --------AACTG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out981   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out982   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out983   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out984   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out985   -----GTGAACTGAGACTA------------------------------T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out986   -----GCGAACTG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out987   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out988   ------TGAACTAA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out989   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out990   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out991   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out992   ----------CTAACTCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out993   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out994   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out995   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out996   ------------G-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out997   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out998   -----GTGAACCGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out999   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1000  -----GTGAACAGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1001  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1002  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1003  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1004  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1005  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1006  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1007  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1008  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1009  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1010  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1011  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1012  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1013  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1014  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1015  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1016  -----GCGAACCGAACCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1017  -----GTGAACTGAGCATA------------------------------T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1018  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1019  -----GTGAACTGAGT----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1020  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1021  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1022  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1023  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1024  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1025  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1026  -----GTGAATTGAATCTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1027  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1028  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1029  -----GTGAACTCAGCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1030  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1031  -----GCGAACTGAGTGTAGT-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1032  -----GCGAACTG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1033  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1034  -------GTGAACTGA----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1035  -----GTGAACTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1036  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1037  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1038  -----GCGAAATGAGCCTAGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1039  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1040  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1041  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1042  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1043  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1044  -----GTGAACTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1045  -------------A------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1046  ------------------A------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1047  -----GCGAACTCAGCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1048  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1049  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1050  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1051  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1052  -----GTGAACTGAGCATA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1053  -----GTGAACTGAGGTTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1054  -----GTGAACTGAGCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1055  -------GTGAACAGCGTA------------------------------C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1056  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1057  -----------TGAGCTCA------------------------------T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1058  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1059  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1060  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1061  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1062  -----GCGAACTGAGCCTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1063  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1064  -----GCGAACAT-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1065  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1066  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1067  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1068  -----GTGAACCGAGCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1069  -----GTGAACTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1070  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1071  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1072  -----GTGAACTGAGC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1073  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1074  ---------AACTGAG----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1075  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1076  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1077  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1078  -----GTGAACTG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1079  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1080  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1081  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1082  -----------------TA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1083  -----GCGAATTGAGT----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1084  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1085  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1086  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1087  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1088  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1089  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1090  -----GTGAATTGAGACTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1091  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1092  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1093  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1094  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1095  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1096  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1097  -----------------TG------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1098  -GCGAACTGAGCG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1099  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1100  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1101  -----GCGAACTG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1102  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1103  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1104  -------------------------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1105  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1106  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1107  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1108  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1109  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1110  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1111  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1112  -----GCGAACTGAGCGTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1113  -----GTGAACTAA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1114  -----GTGAAGTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1115  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1116  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1117  -----GTGAACTGAGTATA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1118  -----GTGAACCGAGC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1119  -----GTGAACTGAGC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1120  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1121  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1122  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1123  -----GTGAATTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1124  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1125  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1126  -----GCGAGCTGAGCATAT------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1127  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1128  ------------------A------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1129  -----------TGAGCGTACC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1130  ------TGAACTGAGGCTA------------------------------C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1131  ------TGAACCGAGCTTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1132  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1133  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1134  ------------GAGCGTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1135  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1136  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1137  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1138  -----GCGAACTG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1139  -----GTGAACTGAGCGCA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1140  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1141  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1142  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1143  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1144  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1145  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1146  -----GTGAACTGAGC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1147  --------AACT--------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1148  -----GCGAAGTG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1149  -----GTGAACTCA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1150  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1151  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1152  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1153  -----GTGAACCGAGCCTA------------------------------C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1154  -----GTGAACTGAGC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1155  -----GTGAACTGAGCATA------------------------------T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1156  ------TGAACTAAGCCTC------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1157  ------GTGAACAAGTCTG------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1158  ------------------A------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1159  --------------------------------------------GCGAAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1160  -----GTGAACTGAGCGTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1161  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1162  -------GACTTGATTTTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1163  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1164  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1165  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1166  -----GCGAACTG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1167  -----GCGAACTGAAAGTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1168  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1169  -----GTGAACTAAGCTTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1170  -----GCGAACTGAGCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1171  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1172  --------------------------------------GTTAA-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1173  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1174  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1175  -----GCGAACTGAGCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1176  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1177  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1178  -------------A------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1179  ---------------GCGA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1180  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1181  -----GTGAACTGAGCGCG------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1182  -----GTGAATTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1183  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1184  GCGAACTGAGTTTAACTAA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1185  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1186  ---------AACTGCCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1187  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1188  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1189  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1190  ------GAACCGAGTTTAG------------------------------C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1191  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1192  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1193  --------AACTGAGCCTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1194  -----GCGAACTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1195  -----GCGAACCGAGCGTAGTTCAGGTGGT--TGGT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1196  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1197  -----GTGAACTGAGCGTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1198  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1199  -----GTGAACTGAGC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1200  -----GCGAACTGAGCGTA------------------------------T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1201  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1202  ---------ACTGGGACGA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1203  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1204  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1205  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1206  -----GTGAACTGAGCGTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1207  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1208  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1209  -------GAACTGAACATA------------------------------T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1210  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1211  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1212  -----GTGAACTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1213  -----GTGAACTGAGT----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1214  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1215  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1216  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1217  ------TGAACTAA-----------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1218  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1219  --------------GCATA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1220  -----GCGAACTAGGCCGA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1221  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1222  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1223  -----GTGAACTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1224  -----GCGAACTG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1225  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1226  -----GCGAACTGAGCCTAA------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1227  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1228  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1229  ------TGAACCGAGCGTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1230  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1231  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1232  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1233  -----GTGAACTGAGACTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1234  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1235  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1236  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1237  -------------------------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1238  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1239  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1240  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1241  -----GTGAACTGAGC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1242  ------TAAACCGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1243  -----GCGAACTG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1244  -----GTGAGCTGAGC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1245  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1246  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1247  -----GCGAACTGAGCGTAGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1248  ------AACTCAGCCT----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1249  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1250  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1251  -----GCGAACTGAGCGCA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1252  -----GTGAACTGAGTCTA------------------------------T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1253  -----GTGAACTGAGC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1254  -----GTGAACTGAGC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1255  -----GTGAACTGAGCCTA------------------------------T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1256  -----GTGAACTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1257  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1258  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1259  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1260  -----GCGAACTGAGCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1261  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1262  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1263  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1264  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1265  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1266  -----GTGAACTGAACCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1267  -----GTGAACTGAGCCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1268  -----GCGAACTG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1269  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1270  -----GTGAACTGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1271  -----------------------------GTTTGGTTTCTTGTGGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1272  -------GAGCTGAGGGTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1273  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1274  ----------GTGAAC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1275  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1276  ------GTGAACTG------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1277  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1278  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1279  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1280  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1281  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1282  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1283  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1284  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1285  ------------G-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1286  --------AACTGAGCGTA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1287  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1288  -----GTGAACTGAGCCTAAC----------------------------T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1289  -----GTGAACTAAACCTA------------------------------T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1290  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1291  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1292  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1293  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1294  -----GCGAACTGAGCCTA------------------------------T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1295  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1296  -----GTGAACGGAGC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1297  -----GTGGTCTGGTTCTGGC----------------------------T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1298  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1299  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1300  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1301  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1302  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1303  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1304  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1305  -----GCGAACTTAGCCTAA------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1306  ------------------A------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1307  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1308  -----GTGAACTGAGA----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1309  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1310  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1311  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1312  ------TGAATTGGTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1313  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1314  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1315  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1316  --------AACTGAGC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1317  -----GTGAACTGAGCATA------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1318  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1319  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1320  ------TGAACTGAGTCTA------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1321  --------------------------------------------------

GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out0     --------------------------------TTCTTTGTGTTT-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1     --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out2     --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out3     CTC--A-------G----------GTGGTTGGTTTCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out4     TGAGCCTGGTTTGGCTACTTG---------TG------ATAGAA-----A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out5     -------------------------------AGCTCAGGTGGCT-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out6     --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out7     CTC--A-------GTTGGG----------ATGGTTCCTTTG-----ATG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out8     -------AGCTCAGGT-GATT---------GGTTCCTTGTGATG-----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out9     ---------------TAGTCTG-------G--TTTCTCGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out10    ---------CTCAGT---------------TGGTTTTTTTTTTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out11    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out12    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out13    -----CTAGCTCAGGTGGCTT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out14    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out15    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out16    CTC--A-------AGTGGTGTG---------GT---TTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out17    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out18    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out19    ----------------TGGTTG-------G--TTCCTTGCG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out20    TCA--GGTG---------ATT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out21    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out22    ----------------GGTTT---------GGTTCCTTGCGATG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out23    --------------------T---------GGTTTGTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out24    GCC--CAAC-TCAGATGGTCT---------GGATCTTTGTGGTA-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out25    CTC--A-------AGTGGTCTG---------GTTTATTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out26    ---------------T-GGTT---------GGTTCCTTATGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out27    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out28    AGC--A-------GGTGGTCTG-------G--TTCCTTACG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out29    AGC--CTAACTCAGGT-GATT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out30    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out31    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out32    CTC--A-------GATGGTCTG---------TTTCTTTATG-----GTC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out33    CTC--A-------GGTGGTCTG---------GTTTCTTGTG-----GAG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out34    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out35    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out36    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out37    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out38    --------------------------------GTTTCTTTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out39    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out40    -----CTAGCTCAGGTGGCGT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out41    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out42    -----------------------------TGGTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out43    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out44    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out45    GTC--TAGC-TCAGGTGGCTT---------GGTTTCTTGTGGTG-----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out46    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out47    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out48    -----CTAACTCGGGTGGCCT---------AGTTTTTTGTGGT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out49    -----CAACTCAGGTGGTCTG---------AGTTTCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out50    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out51    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out52    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out53    AGT--GTAACTCAGGT-TGTT---------GGGTCCTTATGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out54    AGC--TTAACTCAGGT-GGTT---------GGATCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out55    AGC--CTAGCTCGGGT-GGTT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out56    CTT--A-------GGTGTTTTGGTTCC---------TTATG-----GTT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out57    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out58    TGTAGCTCATGTGGT-----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out59    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out60    GCC--TAAC-TCAGTTGGTCT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out61    --------------------------------------------TGGTGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out62    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out63    ------------------TGGT-------TGGTTTCTTGTG-----GCA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out64    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out65    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out66    ------------------------------------------TG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out67    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out68    TTC--A-------G----------GTGGTTGGTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out69    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out70    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out71    --------------------------------TTCCTCGTGATG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out72    CTC--A-------G----------GTGGTTGCTTCCTTGAT-----G---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out73    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out74    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out75    GCC--TAGC-TCAAGTGGTGT---------G-GTTCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out76    --------------------------------TTCTTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out77    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out78    CTC--A-------TGTGGTCTG---------GTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out79    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out80    AGC--GTAGCTCAGGT-GGTT---------GATTCCTTGTGGTG-----A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out81    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out82    CAC--A-------AGTGACTTG-------G--TTCTTTGTG-----ATG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out83    -----------------------------T--CAGGTGGTCTGGTTCCT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out84    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out85    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out86    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out87    TCA--GGTG---------GTT---------GGTTCCTTGTGGTG-----A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out88    ---------CTTAGCT-GGTT---------GGCTTCTTGTGATG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out89    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out90    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out91    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out92    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out93    TTC--A-------G----------GTGATTGGTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out94    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out95    AGC--TTAATTCAAGT-GGTT---------GGTT--TTTTTGGT-----A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out96    CTC--A-------G----------GTGGTTGGTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out97    ---------------TGATTG---------GGTTTCTTGCGGTG----GA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out98    CTC--G-------GGTGGTGTG-------G--TTCCCTGTG-----ATG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out99    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out100   CTC--A-------AGAGGTTTG-------G--TTTCTTGTG-----TTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out101   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out102   ---------CTCAAGT-GGTT---------GGTTCTTTATGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out103   -----CTAACTCAGGTGGTTT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out104   -----------------------------------------------GA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out105   GCA--TAGC-TCAGGTGGTCT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out106   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out107   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out108   -------------GGCGGTGT---------GGTTGCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out109   CTC--A--------GCTGGTTG-------A--TTTCTTGTG-----GTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out110   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out111   GGAATCAACCCACATAGGTT-----------------------------C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out112   AGC--CTAACTCAGGT-GGTT---------GTTTTCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out113   CTC--A-------G----------GTGGTTGGTTTCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out114   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out115   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out116   ATC--A--------ATTGGTTT-------G--GTTTTTTTG-----TTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out117   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out118   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out119   GTC--TAAC-TCAGGTGGTCT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out120   CTC--A-------GGTGGTCTG---------ATTTCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out121   CTC--A-------GATGGTTTGGTTTC---------TTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out122   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out123   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out124   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out125   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out126   GCC--TTGC-TCAAGTGGTTT---------GGTTCCTTGTGATG-----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out127   -----CTAACTCAGGTGGTCT---------GATTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out128   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out129   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out130   CTT--A-------GATGGTGTG-------G--TTTCTTGTG-----GCG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out131   -----AGCATACATGTGGCTT---------GGCTCCTTGTGGTT-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out132   AGC--CTAACTCAGGT-GGTT---------GGTTTCTTGTGGCG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out133   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out134   CTC--A-------G----------ATGGTTGGTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out135   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out136   CTC--A-------G----------ATGGTTGGTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out137   GCA--GCTG---------GTT---------CCTT----CTGGT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out138   -----CAAACTCAGGTGGTCT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out139   -CCCACCCAGGTGGTTGGTT----------------------CC-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out140   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out141   CTC--A-------GATGATTTG----------GTTTTTGTG-----ATG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out142   -------AACTCAGGT-GGTT---------GGGTTTTTTTTTTA-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out143   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out144   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out145   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out146   GAC--TAGC-TTAGGTGGCGT---------GGTTTCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out147   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out148   CCC--TAAC-TCAGGTGGTCT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out149   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out150   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out151   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out152   -------TG---------GTT---------GGTTTGTTGCGGTG-----A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out153   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out154   -----CTACGTCAAGCGACCTG-----C-TGGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out155   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out156   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out157   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out158   ------GTG---------GTT---------GGTTCCTTGT----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out159   -------------------------------------------G-----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out160   CTC--A-------GCTGGTCTG---------GTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out161   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out162   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out163   GCC--TAGC-TCAGCTGGTCT---------GGTTCCTTATGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out164   GCC--TAAC-TCAGGTGGTCT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out165   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out166   -----AGCTAGTCAGTTGGTC---------TGGTCTTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out167   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out168   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out169   AGC--CTAGCTCAGGT-GGTT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out170   -----------------GGTCA-------G--TTCCTTGCG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out171   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out172   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out173   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out174   -----TAGGCTTAGTTGGTTT---------GGTTCTTTGCGGTG-----A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out175   CTG--A-------GGTGGTCTA---------GTTTCTTGTG-----AGA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out176   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out177   -------------------------------------TTCTAG-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out178   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out179   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out180   TTT--A-------GGTGGTCTG-------G--TTTCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out181   CAT--A-------GATGGTTAC-------G--TTTCTTTTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out182   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out183   ---------------------------------------TG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out184   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out185   TTT--A-------GGTGGTCTG---------GTTTCTTATG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out186   -------------------------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out187   CTC--A-------GGTGGTCTG-------G--TTTCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out188   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out189   GCC--TAGC-TCAGGTGGTCT---------GGTTTCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out190   AGC--GTAGCTCAGGA-GGTT---------AGTTACTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out191   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out192   CTC--A-------G----------GTGGTTGGTTCTTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out193   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out194   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out195   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out196   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out197   ATC--A-------GGTATT-TG-------G--TTCCTTATG-----GCG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out198   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out199   GCC--TAGC-TCAGGTGATTT---------GGTTCTTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out200   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out201   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out202   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out203   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out204   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out205   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out206   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out207   GCC--TAGC-TCAGGTGGTCT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out208   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out209   CTC--A-------GGCGGTTTG---------GTTTCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out210   GCC--TAAC-TCAAGTGGTCT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out211   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out212   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out213   GTC--TAAC-TCGAGTAGTCT---------GGTTTTTTATGGGG-----A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out214   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out215   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out216   ------------------TCT---------GGGTTTTTTTTATG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out217   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out218   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out219   -------------GGTGGTTTG-------G--TTCCTTGTG-----ATG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out220   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out221   GCC--TAGC-TCAGGTGGTCT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out222   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out223   CTC--A-------GGTGGTCTG---------GTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out224   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out225   CTC--A-------GGTTGTCTG---------GTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out226   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out227   CTC--AGG--------TGGT--------------TATTTGG-----TAG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out228   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out229   -------------AGGCGGAC---------G----------GTT-----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out230   ---------------TGAACT---------GAGCATAACTCAGG-----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out231   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out232   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out233   --------GCCCAGTTGGTTA---------GATTTCATGTGGTG-----A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out234   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out235   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out236   CTC--A-------GGTGGTGTG---------GTTCTTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out237   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out238   TTC--A-------GATGGTATGGTTTCTTGTGTTTCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out239   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out240   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out241   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out242   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out243   CTC--A-------GGTGGTTTG---------GTTCCATGCG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out244   -------------GTGAACTG---------A----------GCC-----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out245   CTC--A-------GGTGTTCTG-------G--------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out246   TTC--A-------AGTGGTGTG-------G--TTTCTTACG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out247   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out248   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out249   TTC--A-------GGTGGTTTG-------G--TTCCTTAAT-----ATG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out250   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out251   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out252   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out253   ------------------------------TGGTTCTTTACGAT-----A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out254   AGC--GTATCTCAGGT-GGTT---------GGTGACTTGTGGTG-----A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out255   CTC--A-------G----------GTGGTTGGTTTTTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out256   -------------------------------GTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out257   CGAGCCTAACTCAGATGGTTT---------GGTTCCTTACGTGG-----A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out258   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out259   CTT--A-------G----------GTGGTTGGTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out260   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out261   TTC--A-------GGTTGTCTG-------A--CTCTTTGTG-----ATT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out262   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out263   GCC--TAAC-TCAGGTGGTCT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out264   -------------------------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out265   CTC--G-------GGTGGTTTT-------G--GG----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out266   -------------------------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out267   GGT--G-------TGAACGGTC-------T--TTCCTTGTG-----TTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out268   CTT--A-------GGTGATCTG---------ATTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out269   AAC--C-------CGGTGGCTT-------G--GTTCTTACG-----GTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out270   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out271   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out272   -GC--GAACTGAGCCT------------------ATCTCAAGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out273   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out274   ----------------GTTAC---------T----------TGT-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out275   CTC--A-------GGTGATCTG-------T--TTTTTTGAG-----TGA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out276   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out277   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out278   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out279   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out280   CTC--A-------CGTGGTCTG---------ATTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out281   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out282   -----T-------AGCTGGTTG-------G--TTCCTTATG-----ATG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out283   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out284   CTT--A-------AGTGGTTTG-------G--TTATTTATG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out285   AAC--GTAACTCGGGT-AGTT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out286   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out287   -----------------------------------------TTGTGGTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out288   ----------------GGTTTA-------T--TTCCCTGCG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out289   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out290   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out291   GTG--AACT-GAGCGTGGCGT---------GGTTCCTTGGGCTA-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out292   TTT--A-------GGTGGTTAG-------T--TCTTTGGGG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out293   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out294   CTC--A-------GGTGGTCTG---------ATTCCTTGTG-----GTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out295   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out296   -----ATAACCTAGCTCAGGT---------GGTCTGGTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out297   AGT--CTAGCTCAACT-GGTT---------GGTCCCTTGTGATG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out298   CTC--A-------A----------GTGGTTGGTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out299   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out300   -------------G----------GTGGTTCGTTTCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out301   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out302   GCT--TAGC-TCAGGTGGCTT---------GATTCCTTGTGATG-----A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out303   CTC--A-------GCTGGTTAC-------G--TTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out304   -------------------------------------TTCCTTGTGGTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out305   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out306   ATT--A-------GCTGGTTTG---------GTTCGCTGTG-----ATG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out307   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out308   CTC--G-------GGTGGTTTG-------G--TTCATTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out309   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out310   --------------------------------------GTG-----GCG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out311   CTC--A-------GGTGGTCTG---------ATTTTTTGTG-----ATG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out312   CTC--A-------GCCGGT-TG-------G--TTTCTTGTG-----GTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out313   CTC--A-------AGTGGCTTG---------GTTCTTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out314   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out315   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out316   -----ATATACCAGGTGGTCT---------GTTTTCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out317   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out318   CTC--A-------GGTGGCTTG---------GTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out319   GCC--TAAC-TCAGGTGGTCT---------GGTTTCTTGTGGTG-----A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out320   -----CTAGCTCAGGTGGTGT---------GATTTCCTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out321   CTC--A-------GGTGGTGTG---------GTTTCCTGTG-----ATG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out322   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out323   CTC--A-------G----------GTGGTTGGTTCCTTGTG-----ATG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out324   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out325   TTC--A-------TATGGTTTG-------G--TTACTTTTG-----TTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out326   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out327   CTC--A--------CGTGGTTT-------G--TTTCTTGTG-----ACG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out328   -----ATATCTTAGGTGGTTT---------GGTTCCTTGCGGTG-----A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out329   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out330   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out331   ---------------------T-------G--GTTTTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out332   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out333   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out334   CTC--A-------GTCGGCTTA---------GTTTCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out335   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out336   CG----CCTAGCTCAA-CCAC---------CGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out337   TGAACATGCTCGGGTGGTTT---------------------GGT-----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out338   CTC--A-------GCTGGTCTG---------GTTCTTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out339   AGC----------------CT---------AGCTCAGGTGGTTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out340   -----A-------GGTTGTTTG-------G--TTCTTTACG-----ATG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out341   CTC--A-------GGTGGTGTG-------G--TTTTTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out342   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out343   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out344   ---------CTCAGGT-GGTT---------GGTTCTTTGTGGCG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out345   CTC--A-------TGTCGTCTG---------GTTATTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out346   -----A-------GGTGGTTTG-------G--TTCCTTCTG-----GCG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out347   AGC--CTACCTCAGGT-GGTT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out348   AGC--CTAACTCAGGT-AGTT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out349   TTT--A--------TATGGTCT-------G--ACTCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out350   GCC--TAAT-TCACGTGGTCT---------GGTTCTTTGTGGTG-----A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out351   AGC--ATAGCTCAGGT-GGTT---------GGTTCCTTGTGATG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out352   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out353   CTG--C-------GGTGGTTTG----------GTTTTTTTT-----TTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out354   TTC--A-------ATTGGT-TG-------G--TTTACTGTA-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out355   CTC--A-------GGTGATCTG---------GTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out356   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out357   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out358   CGC--A-------GGTGGCTTG---------GTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out359   CTC--T-------GGTGGTGTG---------GTTCCTTGCG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out360   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out361   CTC--A-------A----------GTGGTTGGTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out362   ---------TCAGGTG-GTTT---------GGTTCTTTATGTTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out363   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out364   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out365   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out366   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out367   CTT--A-------AGTGGTCTG-------G--TTTCTTGTG-----GCG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out368   --------------------A---------GGT-----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out369   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out370   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out371   -------------------------------------TATG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out372   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out373   -------------------AC---------TGAGACTAGTTTAA-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out374   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out375   --A--A-------ATGGCTTGG-------T--TCTTTATGG-----TGG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out376   CTC--A-------G----------GTGGTTGGTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out377   AGC--CTAGCTTAGTT-GGTT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out378   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out379   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out380   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out381   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out382   TTA--A-------GGTGGTTGA-------T--TTCTTATGG-----TGG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out383   CCC--CAAGACCAGGAGGTCT---------GGTTCCTTGTGGTG-----A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out384   ---------------------------------------TG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out385   CTC--A-------G----------GTGGTTGGTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out386   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out387   CTC--A-------GGTGGCATG---------GTTTCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out388   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out389   GTC--A-------GGTGGTCTG-------A--TTTCTGGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out390   ------TAGCTCAAGGGGTTT---------GATTT---------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out391   GCC--TAGT-TCAAGTGGTGT---------GGTTCCTTGTGGTG-----A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out392   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out393   -----GTGATTAGTTCCTTG---------------------TGG-----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out394   GCC--TAAC-TCAGGTGGCGT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out395   GCC--TAAACTCAGGT-GGTT---------GGTTTCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out396   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out397   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out398   AGC--GTAGCTCAGGT-GGTT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out399   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out400   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out401   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out402   -----CTAACTCATGTGGTGT---------GGTTCCCTGTAGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out403   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out404   -------------------------------------------G-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out405   CTC--G-------AGGGGCTTG-------G--TTACTTGTA-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out406   CTC--A-------G----------ATGATTGGGTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out407   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out408   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out409   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out410   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out411   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out412   CTT--G-------GGTGGT-TG-------G--TTTCTCGTG-----CTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out413   TTC--A--------GATGTTTG-------G--TTCCTTGTG-----GTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out414   -----CTAACTCAGGTGGTCT---------GGTTCCATGTGCTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out415   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out416   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out417   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out418   GCC--TAGC-TCAGGTGGTCT---------GGTTCCTTATGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out419   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out420   ----------TGGTTCCTTGT---------C----------GTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out421   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out422   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out423   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out424   TCA--GGTAGTTGGTT------------------CCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out425   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out426   ----------------------------------CCTTGTG-----GTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out427   -------------GGTGGCTT---------GGTTTCTCGTGGTA-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out428   GCC--TAAC-TGAAGTGGTCT---------GGTTACTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out429   TTT--A-------GGTGGT-TG-------G--TTTCTTGTG-----GTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out430   --------------GT-GGTT---------GGTTTCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out431   CAG--GTGGTCGGTTT------------------TTTTTTGTTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out432   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out433   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out434   ACT--G-------AGCTGATTG-------G--TTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out435   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out436   --------------------TA-------A--TTTCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out437   ACT--C-------GGGTGGTGT-------G--CTTACTCGT-----GTTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out438   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out439   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out440   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out441   ATC--TATC-TCAGGTGGTGT---------GGTTTTCTATGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out442   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out443   GCT--TAAG-TCAGGTGGTTT---------GGTTTCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out444   --------------------T---------GGTTCCTT------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out445   CTC--A-------G----------ATATTTGGTTTCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out446   ---------TTCAGGT-GGTT---------GGTTTCTTATGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out447   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out448   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out449   -----CTAACTCAGGTGGTGT---------GATTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out450   GAG--CTAACTCAGGT-GGTT---------GGTTTCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out451   AGC--CTAACTCAGGT-GGTT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out452   ---------------CACACA---------AGTTCAATTCCCG-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out453   ---------CTCAGGT-GGTT---------GGTTCATTGTGATG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out454   -----CCAGCTCAGGAGGTCT---------GGTTTCTTATGGTG-----A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out455   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out456   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out457   -------------GC-----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out458   GTC--TAAC-TCAGGTGGTGT---------GGTTTCCTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out459   CTT--A-------G----------CTGGGCGGTTACTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out460   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out461   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out462   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out463   --------------------T---------GGTTCCTTGCGGT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out464   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out465   CTC--A--------TGTGGTTG-------G--TTCTTTGCG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out466   -----------TGGTT-CCTT---------GTGGACTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out467   CTA--A-------GGTGGTCTG---------GTTTCTTATG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out468   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out469   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out470   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out471   CTC--A-------G----------GTGGTTGGTTCCTTGTG-----GCT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out472   GCA--TATC-TCAGGTGGTCT---------GATTTCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out473   ---------------GGTGTTA-------TGTTTTCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out474   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out475   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out476   ------------------TCTG-------G--TTTCT--TG-----CGGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out477   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out478   TTC--A-------GGTGGTTTG---------ATTTTTTGTG-----ACG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out479   CGC--A-------ACCTAGGTG-----ACTGGTTTCTTCTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out480   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out481   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out482   CTC--A-------G----------GTGGTTGGTTCCGTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out483   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out484   GTC--A-------GGT-------------T--TTTCTTGTG-----ATG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out485   CTT--A-------GTTGTTTGG----------CACCATGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out486   GTC--TAGC-TCAGGTGGTCA---------GGTTTCTTGTGTTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out487   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out488   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out489   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out490   ------------------------------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out491   ------------------------------GGTTTCTTGTGGT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out492   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out493   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out494   -----CTAACGCTGGTGGTCT---------GGTTCCACATGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out495   -------------GGTGGTTT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out496   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out497   -CC--TAGA-TCAGGTGGTCT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out498   ATC--A-------GGTGGTTTG-------G--TTTTTTATG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out499   GCT--TATC-TGAGGTCGTCT---------GGTTTCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out500   ------------AGGTGGTTTG-------G--TTTCTTGCG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out501   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out502   CTC--A-------GGTGGTCTG---------GTTATTTTCG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out503   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out504   CTC--A-------G----------GTGGTTGATTTCTTATG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out505   CTC--A-------AGTGGTGTG---------GTTCGCTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out506   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out507   ----------------GGCTT---------GATTTCTTCTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out508   -------------------------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out509   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out510   -----CTAACAAAGGTGGTGT---------GGTTTTCTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out511   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out512   TTC--A-------GGTGGTCTG---------GTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out513   ---------CTCAAGT-GATT---------CGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out514   CTT--A-------GGTGGTTTG-------C--TTTTTTACG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out515   GCC--TAAC-TCATGTGGTCT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out516   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out517   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out518   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out519   --C--CCAT-CTCAGTGGTGT---------GGTTTCTTGTGGTA-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out520   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out521   ATC--A-------GGTGGTTTG---------GTTCATTGTA-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out522   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out523   -----ATAGCTAAGGTGGTAT---------GGTTCCTTGTGATG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out524   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out525   CTC--A-------GGTGGTCTG---------GCTCCTTGTG-----ATG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out526   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out527   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out528   TCA--GGTGGTTGGTT------------------TCTTATGATT-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out529   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out530   CTC--A-------G----------GTGGTTGGTTCTTTGTG-----ATG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out531   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out532   TTC--A-------AGTGGTCTG-------A--TTCTTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out533   CTC--A-------GGTGGCTTG---------GTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out534   ----------------GGTTT---------GCTTTCTTGTGGTC-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out535   -------------TTGGGGT----------------------GG-----A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out536   CAC--A--------GGTGATTT-------G--GTTCTTGCG-----GTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out537   CTC--A-------G----------GTGGATGGTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out538   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out539   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out540   CTC--T-------GGTTGT--T-------TGGTTCCTTGTG-----ATG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out541   ------------------------------GGTTTTGTTCATCGTGGTGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out542   CTC--A-------GGTGGTTTG---------GTTCCGTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out543   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out544   ---------CTTAGGT-GGTT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out545   CTG--A-------GTTTAG-C--------T--CAAGTGGTT-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out546   GCC--TACC-TCAGGTGGTCT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out547   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out548   CTC--A-------G----------GTGGTTGGTTCCTTGGG-----TG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out549   AGC--CTAGGTCAGGT-GGTT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out550   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out551   -------AGTTC-GGATGATC---------AGTTCCTTGTGCTG------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out552   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out553   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out554   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out555   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out556   ----------------GGTCTG-------A--TTCTTGCGG-----TGA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out557   AGC--CCACTTCAGGT------------------GGTTGGTTCC-----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out558   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out559   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out560   CTC--A--------CGTGGTGG-------T--TCGGTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out561   GT---TGCGAAGTTGG------------------TTCCTGAGGT-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out562   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out563   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out564   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out565   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out566   GCC--TACC-TCAGGTGGTTT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out567   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out568   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out569   ---------CTCAGAT-GGTT---------GGTTCCTTGTGATG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out570   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out571   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out572   CTC--A-------AGTGGCTTG---------ATTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out573   --------------------T---------G----------GTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out574   --------------------------------TTTCTTGTA-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out575   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out576   CTT--A-------GGTGGT-TA-------G--TTTCTTACA-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out577   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out578   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out579   CTG--A-------GGTGGTCTG---------GTTCCTTGAG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out580   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out581   CTC--A-------TGTGGT-TG-------G--TTCTTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out582   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out583   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out584   CTT--A-------GGTGGCTTC---------GTTTCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out585   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out586   -------------GGTGGTTT---------CGTTTCTTGTGGTG-----A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out587   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out588   -------------GTGAACTG---------A----------GCC-----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out589   --------------------------------------GTG-----AACT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out590   GCC--TAGT-TCAGGCGGCCT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out591   GCC--TATC-TCAGGTGGTCT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out592   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out593   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out594   CTC--A-------GGTGGTTAG-------G--TCTCTTATG-----ATG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out595   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out596   -----CTAGTTCAAGCGGCCT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out597   -------------------------------------TGCGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out598   CTA--GCCCACCCAGG-TTCA---------AGTTTCCGACTTGA-----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out599   --------------GTGGTGT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out600   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out601   CTG--ACTAGGTAGTCTGATT---------CCTTGCGATGGAAG-----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out602   CCA--GCTCA----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out603   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out604   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out605   GCC--TAGC-TCAGGTGTTGT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out606   -----CTAGTTCAGGTGGTGT---------GCTTTCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out607   GCC--TAGC-TCAGGTGGTCT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out608   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out609   CTC--A-------GTTGGTTAG---------GTTTCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out610   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out611   GCC--TGGC-TCAGGTGATGT---------GGTTCCCTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out612   ------------------TCGG-------G--TTTCTCGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out613   -----CTAACTTAGCTGGTCT---------GGTTACTTATGGT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out614   CTC--A-------GGTGGTCTG---------GTTCCTTATG-----ATG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out615   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out616   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out617   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out618   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out619   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out620   GCC--TATC-TCAGGTGGTGT---------AGTCCCTTGCGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out621   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out622   ---------------------G-------G--TTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out623   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out624   -----------------------------TGGTTCTCTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out625   ---------------TGGTTC---------C----------TTT-----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out626   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out627   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out628   --------------T-----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out629   CTC--A-------GGTGGTTTG-------A--TCCCTTGTG-----CTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out630   CTC--A-------GGTGG-TCT---------GGTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out631   CTC--A-------G----------GTGGTTGGTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out632   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out633   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out634   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out635   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out636   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out637   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out638   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out639   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out640   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out641   ACC--TAAC-TTAGGTGGTCT---------GATTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out642   --------------------T---------GGTTCCATGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out643   CTC--A-------GGTGGTGTG-------G--TTCCTTGTG--GCGATG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out644   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out645   TGAGTGAGCCTAGGTGGTTGG---------T----------TCC-----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out646   -----TTAGCTCAGGTGATCT---------GGTTCCTTGTGGT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out647   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out648   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out649   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out650   -----------------------------G--TATAGTTCTTTGTGATG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out651   CTC--A-------AGTGGTCTG---------GTTTCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out652   -----CTAACACAGATGGTCT---------GATTTCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out653   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out654   CTC--A--------GGTGGTTG-------G--TTATTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out655   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out656   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out657   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out658   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out659   CTT--A-------GGTGGTCTG---------GTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out660   GTC--A-------G----------GTGGTTGGTTCCTTGTG-----ATG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out661   CTC--A-------GGTGGT-TG-------G--TTGCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out662   CTC--A-------TGTGGTCTG-------T--TTTTTGGTA-----GA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out663   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out664   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out665   ----------------------------------------GA--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out666   -----TTAACTCAGGTGGTCT---------GTTTCCTTGTGGTG------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out667   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out668   ------------------------------------------------GA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out669   ------------------T-G--------G--TTCTTTGTG-----TTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out670   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out671   -----CTA-ACTAGGTGGTGT---------GGTTCCTTATGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out672   ACC--TAGT-TCAGATGGTTT---------GGTTCTTT-GTGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out673   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out674   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out675   CCT--A-------ACT-GA-A--------T--GGTTGGTCA-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out676   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out677   -----CTGACTGAGGAGGTTT---------GGTTCCTCGTGG--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out678   TGA--G-------TTAGGCTTG---------GTTTCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out679   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out680   CTC--A-------G--ATGATT-------G--TTTCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out681   CTT--A-------G----------GTGGTTAGTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out682   --------------------------------TTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out683   --------------------------------TTTCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out684   ---------------------------------------TG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out685   ------------------------------------TTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out686   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out687   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out688   CCC--TAGG-TCAGGTGGTCC---------GGTTCTTTATGGCG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out689   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out690   TTC--A-------TGTGATTTG-------G--TTCCTTGTA-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out691   ---------CTCAAGA-GGTT---------GGTTTTTTGTGGTG-----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out692   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out693   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out694   TTC--A-------A----------GTGGTTGGTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out695   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out696   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out697   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out698   TCA--AGTA-----------G---------GTTTTTTTTTTGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out699   AGC--CTATCTCAGGT-GGTA---------GATTTCTCGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out700   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out701   -----CTAACTCAAGTGGTCC---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out702   ---------TTCAGAT-GGTT---------GGTTCTTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out703   ------------------TTT---------GGTTTCTT-CTGTG-----A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out704   GCC--TAAC-TCAGGTGGTGT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out705   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out706   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out707   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out708   GCC--TATC-TTAGGTGGTGT---------GGTTTCCTCTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out709   ---------CTCAGGT-GGTT---------GGTTCCAAGGAAC-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out710   CTC--A-------GGTGGTCTG---------GTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out711   CTC--A-------G----------GTGGTTGGTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out712   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out713   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out714   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out715   CTC--A-------GCTGGTCTG---------GTTCTTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out716   -----CTAACTCAGGTGGCGT---------GGTTCCTTGTGGT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out717   -----A--------GCTCAGTT-------G--GTTAGGTTT-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out718   TTC--A-------GATGGTTTG---------GTTCCGTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out719   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out720   CTC--A-------G----------GTGGTTGGTACCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out721   TTC--A-------G----------GTAGTTGGTTTCTTGTG-----GTT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out722   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out723   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out724   CTC--A-------GGTGATCTG---------GTTCCTTCTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out725   AGC--CTAACTCAGGT-GGTT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out726   ----------GTAGGT-GGTT---------GATTTTCTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out727   ---------CTCAGGT-GATT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out728   CTC--A-------G----------GTGGTTGGTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out729   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out730   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out731   ----------TCAAGT-GGTT---------GGTTCCTTGTGGTG-----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out732   ---------------------------------------CGGGTT-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out733   CTC--A-------GGTGGTCTG-------A--TTTTTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out734   AGC--CCAATTCAGGT-GGTT---------GGTTTCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out735   -AT--C-------AGGGTTGTA---------GTTTCTTGTG-----GTT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out736   -----------------TGG---------------------TTT-----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out737   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out738   --------------GTGGTTTG-------G--ATTCATGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out739   CTC--A-------GGTGGTAGA-------G--TTTCTTGTG-----ATG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out740   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out741   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out742   CTC--A-------AGTGATTTG-------G--TTTCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out743   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out744   CT-----AATTCAGGTGTCTT---------GGTTACTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out745   ------------------------------------------TG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out746   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out747   CTC--A-------GGTGGCTTG---------GTTCATTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out748   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out749   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out750   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out751   ---------------GTTTCT---------T----------ATG-----A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out752   AGA--CTAGCTCAGAT-GGTT---------GGTTTTTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out753   ------------------------------------------------G-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out754   --------------------TG-------G--TTTCTTGTG-----ATG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out755   CTC--A-------G----------GTGGTTAGTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out756   -------AACTTAGGT-GGTT---------GGTTTCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out757   TCC--TCAC-TTAGGTGGCTT---------GGTTCCTTGTAGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out758   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out759   GCC--TAAC-TCAGGTGGTCT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out760   ACC--TAGC-TCAGGTGGTCT---------GATTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out761   -CT--T-------AGTGGT-TG-------G--TTCTTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out762   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out763   --------------GTGGT-TG-------G--TTTCTCACG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out764   -----ATAGCTCCGAAGGTTT---------GATTTCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out765   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out766   -----TACGCTCAGGGGGCTT---------GGTTCCTTGTGTTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out767   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out768   GCG--AACTGAGCCCA-CCCA---------GGTTTCTTGTGGTG-----A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out769   CAT--A-------GCTCAAATG-----GTTGATTTTTTTTG-----GTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out770   ------GGTGGTTGGT------------------TCCTTGTGGT-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out771   -----ATATCCCAGGTGATCT---------AGTTTCTTGTGCTG-----A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out772   CTC--A-------G----------GTGGTTGGGTTTTTCCG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out773   CTC--C-------GGTGGTTTG---------GTT-TTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out774   AGC--T-------TAGCAGTTG-------G--TTTCTTATG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out775   CTC--A-------G----------GTGGTTAGTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out776   AGC--CTAACTCAGGT-GGTT---------GGTTTCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out777   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out778   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out779   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out780   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out781   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out782   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out783   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out784   ------CTAACTCAATGGATT---------TGTTCCTTGTTGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out785   CTT--A-------GGCGGT-TG-------G--CTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out786   -----CTGGCTCGGATGGTTT---------GGTTCCTTGTGGTG-----A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out787   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out788   TTC--A-------GATGGTTTG-------G--TTTCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out789   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out790   TT-----ATCTTAGGTGGTCT---------GGTTCCTGGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out791   CTC--A-------GGTGGTCTG---------ATCTCATGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out792   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out793   AGC--GTAGCTCAGGT-GGTT---------GGTTTCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out794   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out795   -----CTATCTTAGGTGGTCT---------GGTTTCTTGTGGTG-----A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out796   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out797   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out798   AGC--CTAACTCAGGT-GGTT---------GGTTTCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out799   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out800   GCC--TAGC-TCAGGTGGCTT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out801   -------------------------------GTTCTTTTTCGGT-----A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out802   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out803   CTC--G-------G----------ATGGTTGGTTTTTTATG-----ATT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out804   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out805   -----GAACTGAGTGGTGTGT---------GGTTTCCTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out806   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out807   GTC--TAGC-TCAGGTGGTCC---------GATTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out808   -----CTAACTTAGGTGGCTT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out809   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out810   GCC--TAAC-TTAGGTGGTCT---------AGTTTCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out811   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out812   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out813   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out814   --------GTTCAGTTGGTTA---------GGTTTTCTTGTGATGCATGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out815   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out816   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out817   -------------G----------TGGTTTGGTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out818   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out819   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out820   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out821   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out822   TCC--TAAC-TCAGGTGACTT---------GGTTCCTTTTGGTT-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out823   AGG--CTGGCTCAGGT-GGTT---------GCTTTCTTGTGGTC-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out824   -------AGATTATGT-GGTT---------AGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out825   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out826   CTC--A-------GATAGTCTG-------G--TTTTTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out827   GCC--TAGC-TTAGGTGGTCT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out828   ---------GCGAACT-AAAC---------CTAGCTCAGGTTGG-----A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out829   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out830   CTAGTGCACCTCGTTTGGTTT---------C----------TTA-----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out831   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out832   CTC--A-------GGTGGTCTA---------CTTTCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out833   TGAGCGTAGCTCAGGTGGTT-----------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out834   CCT--A-------GCTCAGGTG---------GTTTCTCATG-----ATG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out835   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out836   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out837   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out838   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out839   CT-----AACTCAGATGGTCT---------AGTTCCTTGTGGTT-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out840   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out841   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out842   -------AGATCACGT-GGTT---------GGTTTCTTGCGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out843   -----CTAGATCAGTAGGTTAG-------A--TTTCTTTTG-----ATG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out844   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out845   --A--A-------GTGAGTCAG-------G--TTTTTTTTG-----TTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out846   GGC--TAGT-TCAGGTGGTGT---------GGTTTCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out847   CTT--A-------GATGGTCTG---------ATTCCTTCTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out848   GCC--TATC-TCAAGTGGTTT---------GGTTTCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out849   GGC--GTATCTCAGTT-GGTT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out850   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out851   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out852   CTT--A-------GGTGGTCTG---------GTTTTTGATG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out853   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out854   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out855   ATA--A-------G----------GTGGTTGGTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out856   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out857   CTC--A-------GGCGGCCTG---------ATTTCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out858   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out859   CTC--A-------GGTGGTCTG-------T--TTTCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out860   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out861   CTC--A-------G----------GTGGTTGGTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out862   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out863   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out864   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out865   -----AGAGCTCAGGTGGTCT---------GGTTCCTGGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out866   ACT--G-------AGCTAGGGT-------TGGTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out867   GCC--TAAGCCCAAGTAATTGG-------G--T-TCCTTGG-----ATG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out868   ----------------------------------------------GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out869   ---------------------------------------TGG--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out870   TTT--A-------A----------GTGGTTGGTTTCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out871   ---------------T-GGTT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out872   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out873   CTC--A-------G----------GTGGTTTGTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out874   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out875   TCA--GGTG---------GTT---------GGTTCCTTATGGTA-----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out876   AGC--CTAACTCAGAC-GGTT---------GGTTTCTTGTGGTG-----A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out877   ACT--CTAACTCAGGT-GGAT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out878   CTC--A-------A----------GTGGTTGGTTTCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out879   ------TAGCTCAGTTAGTTA---------AGTTGTTTCCAGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out880   GTC--A-------GTTGGTTAG-------G--TTCTTTGCA-----GCG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out881   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out882   CTC--A-------AGTGGTCTG---------ATTCTTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out883   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out884   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out885   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out886   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out887   GTC--A-------GGTGGTTGG----------TTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out888   ATC--A-------GGTGGTCTG---------GTTTCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out889   -------------------------------GTCCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out890   --------------------TG-------G--TTT---------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out891   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out892   ---------------AAGTGGT-------TGGTTTCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out893   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out894   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out895   TAC--G-------AGTGGTTTG-------G--TTCGTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out896   --------------------TG-------G--TTGCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out897   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out898   -----CAAACTCAGGTGGTGT---------GGTTTCTTGTGATG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out899   ---------------------C-------TGGTTCATTGTG-----ACG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out900   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out901   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out902   CTC--A-------GGTGG--------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out903   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out904   -----CTATCTCAACTGGTCT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out905   CTC--A-------CGTAGT-TG-------G--TTCTTTTTG-----ATG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out906   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out907   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out908   ----------------------------------------GGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out909   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out910   CTC--A-------GGTGGTTTG-------G--TTCCTTGTC-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out911   TGGGCCTATCTCAATTGGTTG---------GTTCCTT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out912   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out913   ------------------------------------------------G-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out914   TAG--TTACCTCAGCTGGTCT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out915   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out916   ---------------T-GGTT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out917   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out918   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out919   --------------------------------------------TGG--T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out920   --------AGGTAGTT-TGAT---------TATTCCTTGTGGTG-----A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out921   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out922   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out923   CTC--A-------GGTGGTCTG---------GTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out924   CTC--G-------G----------GTGGTTGGTTCCTTGTG-----GTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out925   ---------------GG--------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out926   CTC--A-------GGTGGCTTG-------G--TTCTTTACG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out927   --------------------T---------GGTTCCTTGCGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out928   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out929   -----------------------------G--TTTCTTGTG-----GTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out930   AGC--CTAACTCAGGT-GGTT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out931   ATG--A-------GGTGGTCTA---------ATTCCTTATG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out932   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out933   AGC--GTACCTCAGGT-GGTT---------GGTTTTTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out934   -----CTAATTCAGGTGGTCT---------GATTCGTTGGGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out935   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out936   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out937   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out938   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out939   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out940   -GG--ACTGAGCGTAA------------------CTCAGGTGGT-----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out941   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out942   ---------CTTAGGT-GGTT---------GGTTCCTCATGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out943   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out944   ACG--C-------TAAGATGGT-------TGGGTCCTTGTG-----GTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out945   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out946   CTT--A-------GGTGGTCTG---------GTTCCTTGTG-----GGG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out947   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out948   GTC--A-------G----------GTGGTTGGTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out949   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out950   -----CTATCTCAGGTTGTCT---------GGTTTCTTGTGATG-----A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out951   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out952   GCC--TAAC-TTAGGTGGTCT---------GGTTCTTTGTAGTG-----A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out953   -------------GGTGGTGT---------GATTCCTTCTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out954   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out955   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out956   CTC--A-------G----------GTGGTTGGTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out957   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out958   ACT--G-------AGTCTAACT-------C--AGGTGGTCG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out959   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out960   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out961   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out962   CTATCCCAGCTCAGGTGACGT---------GGTTCACCTACGGT-----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out963   AGC--GTAGCTCGGGT-GGTT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out964   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out965   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out966   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out967   CTC--A-------AGTGGTCTG---------GTTTCTTGCG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out968   CTC--A-------GGTGGTCTG-------G--TTTCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out969   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out970   CTC--A-------GGTGGTCTG---------GATCTTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out971   -----ATAACTCAGGTGCTCT---------AGTTCCTTGTGATG-----A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out972   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out973   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out974   ----------CGGGTG-AACT---------GACCTTAACTCGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out975   CTC--A-------AGTGGTCTG---------GTTTCTCGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out976   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out977   -----------------GTG---------------------GTG-----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out978   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out979   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out980   AGC--CTAACTCAGGT-GGTT---------GGTTTCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out981   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out982   -----------------TGGTC-------TGGTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out983   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out984   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out985   TTC--A-------GGTGGTCTG---------ATTCTTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out986   AGC--CTAACTCAGGT-GGTT---------GGTTTCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out987   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out988   GCC--TAAC-TCAGGTGGTCT---------GGTTCCTGGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out989   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out990   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out991   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out992   CTC--A-------GGTGGTTGG----------TTACTTGTG-----TTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out993   -GC--GAACTGAGCCT------------------AACTCATGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out994   ------------------------------TGGTTGCTTGGGGT-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out995   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out996   AAC--TGAGCTCAGGT-GGTT---------GGGTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out997   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out998   GCC--TAAC-TCAGCTGGTCT---------GGTTCTTTGTGATG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out999   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1000  GCG--TAGA-TCAGGCGGCTT---------GGTTACTTGCGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1001  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1002  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1003  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1004  -----------------------------G--TTCCTTGTT-----ATG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1005  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1006  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1007  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1008  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1009  --------------------------------GT----CTCTCGTGGCGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1010  --------GCTCATGTGGCGT---------GGTTCCCTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1011  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1012  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1013  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1014  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1015  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1016  CTC--A-------G----------GTGGTTGGTTCCTTGTG-----ATG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1017  CTC--A-------GATGATTTG-------A-------CGGT-----GGA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1018  ------------------TGGT-------TGGTTTTTTGTA-----GTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1019  -----CTAACTCAGCTGGTCT---------GATTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1020  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1021  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1022  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1023  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1024  --------------GTGGTTTG-------G--TCTTTGTTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1025  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1026  CTC--A-------GGTGGTCAT---------GTTTCTTGTG-----GCG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1027  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1028  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1029  TTT--A-------GGTGGCTTG-------G--TTTCTCGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1030  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1031  TCA--GGTA---------GTT---------AGTTTCTTGTGGTG-----A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1032  AGT--CTATCTCATGT-GGTT---------GGTTTCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1033  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1034  GC-----CGCTCAAGTGGTCT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1035  GCC--TAAC-TCAGGTGGTCT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1036  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1037  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1038  TC----------------AGG---------TGGTTGGTTTCTTG-----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1039  GCG--A-------ACTGAG-C--------C--TAGCTCAGG-----TAG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1040  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1041  ----------------GGTCTG-------A--TTCCTTGCG-----GTGA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1042  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1043  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1044  GCC--TAGC-TCAGGTGGTCT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1045  GCC--TAAC-TCAGATGGTGT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1046  CTC--A-------GGTGGTCTG---------GTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1047  CTC--A-------G----------GTGGTTGGTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1048  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1049  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1050  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1051  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1052  TTC--A-------GGTGGCTTG---------GTACCTTGTA-----ATG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1053  CTC--G-------GATGGTTTG-------A--TTCCTTGTG-----GGG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1054  CTC--A-------GATG---------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1055  CTC--A-------CGTGATCTG-------A--TTCATTATG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1056  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1057  GCT--C-------AAGTGGGTG-------G--TTCTTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1058  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1059  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1060  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1061  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1062  CTC--A-------GATGATGTG-------G--TTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1063  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1064  AGC--GTAGCTCGGGT-GGTT---------GGTTTCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1065  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1066  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1067  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1068  CTC--A-------GGTGTTCTGGTTTC---------TTGTG-----GTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1069  GCC--TATC-TTAAGTGGTCT---------GGTTCCTTGTGGTA-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1070  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1071  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1072  -----CTAGCTCGGGTGGCTT---------GGTTCCCTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1073  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1074  -----ATAGCTCAACCGGTTA---------GGTTTCTTGTGGTG-----A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1075  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1076  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1077  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1078  AGC--CTAACTCAGGT-GATT---------GGTTTCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1079  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1080  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1081  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1082  CTC--G-------GTTAGTTAG---------GTTCATTTTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1083  -----CTAACTCAGGTGGCCT---------GATTCCTTGTGATG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1084  ------------------GTTA-------A--CTACTCCTATCTCAGGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1085  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1086  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1087  -TCAGGTGATTTGGTTCTTTC---------AG---------TTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1088  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1089  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1090  CTC--A-------GGTGATCTG-------G--TCCCTTTTG-----ATG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1091  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1092  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1093  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1094  ---------------------------------------TG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1095  -------AACTCACGTGGTT-----------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1096  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1097  CTC--A--------GGTGGTTT-------G--TTTCTTGTG-----ATG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1098  TAC--GTAGCTCAGGT-GGTT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1099  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1100  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1101  AGC--CTAACTCAGGT-AGTT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1102  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1103  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1104  GCT--C-------AGGTGTCTC-------G--TTCATTGTG-----GTGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1105  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1106  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1107  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1108  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1109  -------------------CT---------GGTTCCTTGTGAT------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1110  ----------------GATCTG---------GTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1111  -------------GTT-GTTT---------GGTTACTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1112  CTA--A-------G----------GTGGTTGGTTCCATGTG-----GTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1113  GCC--TAAC-TTAGGTGGCTT---------GATTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1114  GCC--TATC-TCAAGTGGTCT---------GGTTCCTTATGGTA-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1115  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1116  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1117  CTC--A-------GGTGGTCTG---------GTTCTTTATG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1118  -----CTACCTCACGTGGTCT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1119  -----CTAGTTTAGGTGGTGT---------GGTTTCTTGTGGTG-----A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1120  --------GCTCAGGT-GGTT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1121  ---------------------------------TCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1122  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1123  GCT--TAAC-TCAGGCGGTCT---------AATTCTCTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1124  ------GCCCAGGTAT-AGTT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1125  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1126  ---------CTCTTGT-GGTT---------CGTTTCTTGTGGTA-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1127  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1128  CTC--A-------G----------GTGGTTGGTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1129  ---------TCGGATA-GTTT---------GATTACTTATGGTA-----A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1130  CTC--A-------GGTGGTTTG-------G--TTGCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1131  CTT--A-------GGTGGTCTG---------GTTCCTTCTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1132  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1133  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1134  CTC--A-------GGTGGTCTG---------TTTCTTTCTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1135  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1136  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1137  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1138  AGC--CTAACTCAGGT-GATT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1139  CTT--A-------GATGGTTTT-------TGTTTCCTCATG-----GTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1140  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1141  GCT--C--------AGTGGTTG-------G--TTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1142  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1143  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1144  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1145  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1146  -----CTAGCTCAGGTAGTGT---------GGTTCTCTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1147  -GA--GCCTACCAGGTGGTCT---------GGTTTCTTGCGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1148  AGA--CTGACTCAGTT-GGTT---------CGGTACTTGGGTTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1149  GCC--TAACTCAGGTTGGTCC---------TGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1150  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1151  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1152  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1153  TTT--A-------GTTGGTCTG-------A--TTCTTATGG-----TGG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1154  -----CTATCCCAGGTGATCT---------GGTTCCTTGTGGTG-----A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1155  CTT--A-------CGTACTCTG-------G--TTCCTTGTG-----ATA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1156  -----------------CTCAA-------G--TTCCATCAC-----AAG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1157  TTC--A-------GGT-GGTTG-------G--TTTCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1158  CTC--A-------AGTGATATG-------G--TTCCTTGTA-----GTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1159  TGAGAGTAACT--------------------------------------C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1160  CTC--A-------G----------GTGGTTGGTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1161  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1162  CTC--AGG--------TGGT--------------GGGTTAA-----TTC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1163  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1164  -------AACTCAGGT-GGTT---------GGTTTCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1165  ----------------CTTGC---------G----------GTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1166  AGC--GTAACTCAGGT-GGTT---------GGTTCCTTATGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1167  CTC--TTGTGGTTGGATTCCCG-------G--TGGATTTTA-----GTT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1168  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1169  TTC--A-------GGAGGTTTG-------G--CTCATTATG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1170  CTC--A-------G----------GTGGTTGGTTCCTTGTG-----ATG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1171  ---------------GGGGGTC-------TGGTTTATTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1172  -------------TTGAGTCC---------A----------GAT-----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1173  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1174  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1175  CTC--A-------GGTGGCCTG-----GTTCTTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1176  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1177  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1178  GCC--TAGC-TCAGGTGGTCT---------GGTTTCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1179  CTG--A-------GCTTAC-CT-------C--ATGTGGTTG-----GTT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1180  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1181  ATC--A-------TGTTGTTTG-------G--TTCATTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1182  ACC--TAAC-TTAGGTGGTCT---------GATTTCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1183  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1184  TTA--A-------G----------ATGGTTGGTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1185  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1186  CTC--A-------GCTGGTCTG---------ATTTCTTGTG-----GTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1187  ----------------GGTTT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1188  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1189  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1190  TTC--A-------GGTGGTCTG---------ATTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1191  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1192  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1193  CTC--A-------G----------CTGGTTGGTTTCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1194  GCT--TAAC-TTAGGTAGTCT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1195  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1196  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1197  CTC--A-------GGTA-----------------------------GAT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1198  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1199  -----CTAACTCAGGTGACTT---------AGTTTCTTGTGGTT-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1200  CTT--A-------GGTGGTTGG-------T---TCCCTGCG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1201  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1202  CTC--A-------GGGTGTTGG-------A--TTCCATGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1203  -----------------------------TGGTTTCTTATA-----GTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1204  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1205  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1206  CTC--A-------AGTGGTTTG-------G--TTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1207  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1208  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1209  CTG--A--------GATGGTTG-------G--TTTCTTATG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1210  --------------------------------TTCTTTGTGGTT-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1211  --C--A--------AATGGTTG-------G--TTCCTTGGGGTGGGGTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1212  GCC--TGGT-TTAGGTGGTGT---------GGTTTCATATGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1213  -----CTAACTCAGGTGGTGT---------GGCTCCCTATGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1214  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1215  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1216  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1217  CAT--A-------GCTCAGGTT-----GTTGGTTCCTTCTG-----ATG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1218  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1219  CTC--A-------G----------GTGGTTGATTTCTTACG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1220  CTC--A-------GGTTGTTGG---------ATTCCATATG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1221  -------------------------------CCT---GTGGTG------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1222  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1223  ACC--TAGC-TCAGGTGGTAT---------GGTTTTTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1224  AGT--GTAGCTCAGGT-GGTT---------GGTTTCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1225  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1226  ---------CTCAGGT-GGTT---------GGTTTCTTGTGATG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1227  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1228  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1229  CTT--A-------G----------ATGGTTGGTTCCTTATG-----ATG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1230  ------------AGGT-GGTT---------GGTTCTTTGTGTTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1231  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1232  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1233  CTC--A-------GGTGGTCTA---------ATTACTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1234  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1235  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1236  -----------CAGATGATTTG-------G--TTTCTTGGG-----ATG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1237  CTC--A-------GGCGGTTTG---------GTTCCTTGCG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1238  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1239  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1240  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1241  -----CTAACTCAGGTGGTCT---------GGTTCTTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1242  GCC--TGTC-TCAAGTGGTCT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1243  AGC--CTAGCTCAGGT-GGTT---------GGTTCCTTGTGGCG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1244  -----TTAGCTCACGTGGTGT---------GGTTCCCTTTGGT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1245  --------------------TG-------G--TTTCTTGTG-----CTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1246  ------------------------------GGTT----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1247  TCA--GGTGGGTTGGT-TCCT---------TATGGTGGAACAAG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1248  -----CTAAGTCGGGTGTCGT---------GGTTTCCTGCGGTA-----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1249  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1250  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1251  GTC--A-------G----------GTGGTTGGTTCCTTGTG-----GTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1252  CTC--A-------GGTGGTCTG-------G--TTTTTTTTA-----TGG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1253  -----CTAGGTCTGGTGGTGT---------GGTTTCCTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1254  -----CTAGGTCTGGTGGTGT---------GGTTTCCTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1255  CTC--A-------GGTGGTGGG---------GTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1256  GCC--TAGC-TCAGGTGGTAT---------CGTTCCATGTGATG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1257  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1258  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1259  ----------------------------------CCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1260  CGC--A-------GGTGGT-TG-------G--TTCTTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1261  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1262  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1263  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1264  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1265  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1266  CTC--A-------GGTGGCATG---------GTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1267  CTC--A-------GGTGGCTTG---------GTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1268  AGC--CTAGCTCAGGT-GGTT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1269  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1270  GCC--TAGC-TCAGGTGGTTT---------GGTTCTTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1271  -------------------------------------------G-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1272  TTC--A-------G----------GTGGTTGGTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1273  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1274  -----ATAACCTATCTCAGGT---------AGTCTGGTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1275  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1276  AGC--CAGC-TCAGGTGGTCT---------GGTTCCTTGTGGTA-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1277  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1278  ---------------GTGGTTG-------G--TTTCTTGTG-----ATA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1279  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1280  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1281  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1282  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1283  -----A-------GGTGGT--G-------TGGTTCCTTACG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1284  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1285  AGC--GTATCTCACGT-GGTT---------GGGTCCTTCTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1286  CAC--G-------G----------GTGGTTGGTTCCTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1287  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1288  CAG--GTGGTCTGGTCTGGTT---------CTTTGTGGTGGAAC-----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1289  CTC--A-------GGTGGTCTG---------TTTTCTCGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1290  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1291  --------------GTGGTCTG---------GTTCCTTATG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1292  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1293  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1294  CTC--A-------CGGATTG---------G--TTCTTTTTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1295  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1296  -----CTAACTCAGGTGGCTT---------GGTTCCTTGTGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1297  CTA--AAAAAATGGTCTGGTT---------CCTT---GTGGTGC-----A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1298  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1299  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1300  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1301  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1302  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1303  -TC--G-------GGTGGTGTG---------GTTTCCTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1304  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1305  ---------CTCATGT-GGTT---------GGTTATTTATGGTG-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1306  CTC--A-------GGTGGTCTG---------CTTACTTGTG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1307  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1308  -----ATAACTCAGTTGGCCT---------GGTTCCTTGTGTAG-----A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1309  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1310  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1311  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1312  -----ATAACTCAGGTAGCTT---------GGTTCCTTGTGGTT-----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1313  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1314  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1315  ------------------TTTG-------G--TTCCTTATG-----GTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1316  -----CTAACTCAGGTGGCTT---------GTTTTTT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1317  CTC--A-------AACTGTTTG---------GATCCTTCCG-----GTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1318  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1319  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1320  CTC--A-------GATGGATTC---------ATTCCTTATG-----GTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1321  --------------------------------------------------

GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out0     G--A---------------------AC--CAAC--TAAT---CCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1     --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out2     --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out3     G-AACCAGC-C--CACCC------AGA----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out4     A--ACTCAC-G--CACC--C----ACC--TTCA--AATT---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out5     G--TTCCTT-G--TGCC--C----AGG--TTCA--AATC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out6     --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out7     G-AACTAGC-C--CACTC------ATG----------TTCA---AG-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out8     A--ATCAGC-T--CACC--C----AGA--TTCA--AGTC---TTCA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out9     T-AAC--------TAGTGAC--TCAG----------GTTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out10    A--ACCAGC-C--CATA--C----AGG--TTCA--AATC---TCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out11    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out12    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out13    A--ACCAGC-C--CACT--C----AGG--TTTA--AGTT---CTAT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out14    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out15    -------------------CAGCCAG----------GTTCA---AA-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out16    G-AACCAGC-C--CACCT------GGG----------TTAA----A-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out17    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out18    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out19    A-AACCAAC-A--CAACCAGG---AA---TTCAATCGTTTT---AA-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out20    A--ACCAGC-C--CACC--C----AGG--GTCA--AATC---TTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out21    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out22    A--ACCATC-C--CACC--A----TGT--TCAA---GTC---CCA-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out23    A--ACCAGC-C--CATC--C----ATG--TTTA--AGTC---ATAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out24    A--ACCAGC-C--CATC--C----GAG--TACA--AGTC---CTAT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out25    A-AACCAGT-C--CATCC------AGG----------ATCA---GG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out26    A--ACCAAA-C--CCAC--C----CAG--GTCA--AGTC---TCCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out27    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out28    G-AACCAGA-----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out29    A--ACCAGC-G--CACC--C----AGG--TTCA--AGTC---TCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out30    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out31    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out32    G-AACCAGC-C--CACCC------AGA----------TTCA---AA-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out33    C-CCACACA-----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out34    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out35    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out36    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out37    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out38    G-AATCAGC-C--CACGC------AGG----------TTTA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out39    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out40    A--ACCAAC-C--CATT--C----AGG--TTCA--AATC---TTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out41    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out42    G-AACCAGC-T--CACAC------AGG----------TTTA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out43    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out44    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out45    A--ATCAGC-C--CACC--C----AGG--TTTA--AATC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out46    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out47    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out48    --------------------------------------------GG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out49    A--ATCAAC-C--CATC--C----AGG--TTCA--AGTC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out50    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out51    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out52    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out53    A--ACCAGA-C--CAAC--C----AGG--TTCA--AGTC---TCTG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out54    G--ACAAGC-C--CACC--C----AAG--TTCA--AGT----TTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out55    A--ACCAGC-C--CACC--C----AGG--TTCA--AGTT---CCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out56    G-AACCAAT-C--CACCC------AGA----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out57    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out58    ------------------------------TCA--AGCT---CTAT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out59    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out60    A--AACAGC-C--CACC--G----AGG--TTCA--AGTT---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out61    A--ACCAGC-T--CACC--C----CGC--TAAG--T--C---TC-C----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out62    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out63    A-AATCAGT-C--TACTC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out64    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out65    --------------------------------A--AGTT---CAAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out66    A--ACCAGC-C--TACC--C----AGA--TTCA--AGTC---CCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out67    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out68    G-AACCAGC-C--CACCC------AGG----------TTCA---AA-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out69    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out70    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out71    G--ATCAGT-C--CACT--C----AGA--TTAA--AGTT---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out72    A-AACCAGC-C--TATCC------AGG----------TTCA---AT-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out73    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out74    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out75    A--ATTAGC-C--CACC--C----AAG--TTCA--AGTC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out76    G-AACCAAC-C--CACCT------AGG----------TTTA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out77    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out78    G-AACCATC-T--CGTCC------AAG----------TTTA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out79    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out80    A--ATCAGC-C--CACA--C----AGG--TTCA--ACTC---TCCC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out81    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out82    G-AACTAGC-G--TACTC------GGG----------TTCA---AT-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out83    T-GACCAGA-C--CA------CCCAA----------GTTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out84    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out85    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out86    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out87    A--ATCAGC-C--CACC--C----AGT--TTCA--AGTC---CCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out88    A--ATTAGT-T--CATT--T----AGG--TTCA--AGTT---CCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out89    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out90    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out91    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out92    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out93    A-AACCAGC-C--CACGG------AGG----------GTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out94    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out95    G--ACCAGC-C--CACT--T----AGG--TTCA--AGTC---TCCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out96    G-AACCAGT-C---------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out97    A--ATCAAC-C--CATT--C----AAG--TTTA--ATTC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out98    A-AACCAGC-A--CAC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out99    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out100   G-AACCAGC-C--CTCTCAA----------------GTTCA---TG-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out101   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out102   A--ACCAGA-C--CGCT--C----AGG--TTGA--AGTC---ACAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out103   A--ACCAGC-C--CATG--C----AGG--TTCA--AGTT---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out104   A-CCACCCA-G--CA------CCTAG----------GGTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out105   A--ACCAGC-C--CACC--C----AAG--TTCA--AGTC---CCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out106   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out107   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out108   A--TCCATC-C--CACT--C----AGG--TTCA--AGTT---CAAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out109   A-AACCAGC-T--C------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out110   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out111   A--AATCTT-C--GATT--T----G-------A--AATT---TCCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out112   A--ACCAGC-C--CACT--T----AGG--TTCC--AGTC---CCAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out113   T-AACCAGC-C--CACCC------ATG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out114   -----------------------------CCAC--TCAG---GTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out115   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out116   G--AACATC-C--CACCTAG----------------GTTCA---AC-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out117   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out118   ----------------------------------------A---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out119   A--ACCAGC-C--CTAC--C----CAG--GTTT-----A---AGTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out120   G-AACCAGC-C--CACCC------AAG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out121   G-AACTAAG-C--CACCC------AGA----------TTCA---AT-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out122   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out123   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out124   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out125   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out126   A--ATCAAC-C--CACT--C----AGA--TTCA--AGTT---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out127   A--ACCATC-T--CACC--A----AAA--TTCA--AATC---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out128   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out129   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out130   G-AAACAAC-C--CAATC------ATG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out131   A--ACCGGC-C--CATC--A----AGA--TTCA--AGTC---ATAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out132   A--AC-CAG-C--CACC--T----AGG--TTCA--AGTC---TCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out133   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out134   A-AACCAGC-C--CACCC------AGA----------TTCA---AA-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out135   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out136   G-AACCAGC-C--CACCC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out137   ----TCAAC-C--CACC--C----AGG--TTCA--AGTC---CCGG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out138   A--ACCAGC-C--CACC--C----AGG--TTCA--AGTC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out139   T--GTGGTG-G--AACC--A----TGG--TTCA--AGTT---TTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out140   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out141   G-AACCAGA-C--CACCT------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out142   A--ACCAAC-C--CATC--C----AGA--TTCA--AGTT---TCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out143   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out144   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out145   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out146   A--ACCAAC-C--CACA--T----AGG--TTCA--AGTT---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out147   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out148   A--ACCAGC-C--CACT--C----AGG--TTAAAAAGTC---ATAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out149   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out150   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out151   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out152   A--ACCAGT-C--CACA--C----AGG--TTCA--AGTT---TCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out153   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out154   A--ACC-AG-C--CATT--T----AGG--TTTA--AGTT---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out155   -------------GAAC--C----AGT--CCAC--TCAG---GT-A----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out156   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out157   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out158   -----GGTG-G--AACC--A----GTG--TTCA--AGTC---CCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out159   A--ATCAGC-C--CATA--C----AGG--TTCA--AATC---TCTG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out160   G-AACCAGC-C--CACCC------AAG----------TTTA----A-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out161   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out162   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out163   A--ACCAGC-C--CACC--C----AGA--TCAA--AGTC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out164   A--ACCAGC-C--CACT--C----AGG--TTCA--AGTT---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out165   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out166   A--ACCAAC-C--CATC--C----AGG--TTAA--AATT---TTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out167   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out168   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out169   A--ACCAGC-C--CACC--C----AGG--TTCA--AGTC---TCCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out170   G-AACCATC-A--CACCTTGGTTCAA----------ATTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out171   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out172   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out173   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out174   A--ACCAGC-C--CACC--C----AGT--TTCA--AGTC---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out175   G-AACCAGC-T--CACCT------AGG----------CTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out176   -------------------C----AGG--TTCA--AATT---TTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out177   ---------------------------------------------C----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out178   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out179   -------GC-T--CGTC--C----GGG--TTCA--GGTC---CT-C----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out180   G-GACCAGC-C--CATCC------AAG----------TTTA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out181   T-AACCAAC-C--CATTC------AGA----------TTAA---AG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out182   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out183   G-AACCTGC-A--CA------CCTAG----------GTTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out184   ---------------------------------------------G----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out185   G-AACCAGT-C--CACAT------AGG----------TTTA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out186   A--AACAGCCC--ACCC--G----AGT--T-AA--AATA---TTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out187   G-AACCAGC----CCCCC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out188   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out189   A--ACCAGC-C--CACC--C----AGG--TTCA--AGTC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out190   A--ACCAGC-C--CACC--C----AGG--TTCA--AGTC---TCCA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out191   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out192   G-AACCAGC-C--C------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out193   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out194   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out195   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out196   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out197   G-AACCAGT-C--CATCC------ATG----------TTTA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out198   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out199   A--ACCGGT-C--CATC--C----AAG--TTCA--AGTC---ATAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out200   --------------------------------A--AGTC---TCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out201   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out202   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out203   --------------------------G--TTCA--AGTC---TTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out204   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out205   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out206   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out207   A--ACTAGC-C--CACC--C----AGG--TTCA--AGTC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out208   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out209   G-AACCAGC-C--CACAC------AGG----------TTCA----A-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out210   A--ACCAGT-C--TACC--C----AGG--TTTA--AGTC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out211   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out212   ----------C--CACT--C----AGG--TTCA--AGTC---CGAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out213   A--ACCAAC-C--CACA--C----AAG--TTCA--AGTA---TTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out214   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out215   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out216   A--ATCAGC-T--CACC--T----AGG--TTCA--AATC---TTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out217   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out218   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out219   G-AGCGAGT-C--CACCAAGA----------------ATTC---AT-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out220   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out221   A--ACCAGC-C--CATC--C----AGG--TTCA--AGTC---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out222   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out223   G-AACCAGC-C--CATCC------AGG----------TTCA----A-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out224   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out225   A-AACCAGC-C--CACCT------AAG----------TTCA----A-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out226   -------------------------------------------CTA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out227   A-ATCAGCC-C--CCCC----------------AACGTTCA---AG-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out228   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out229   A--T-GCTG-G--TGGA--A----CAT--GCAG--GTTC---GCTA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out230   G--GTCTGG-T--TCCC--C----AGG--TTCA--AGTC---ATAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out231   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out232   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out233   A--ATTAAC-C--CATC--A----GAG--GTAA--AGTC---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out234   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out235   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out236   G-AACCAGC-C--CACCC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out237   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out238   G-AAATAGC-T--CACTC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out239   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out240   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out241   ----------C--CAAC--C----AGG--TTCA--AGTC---TCCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out242   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out243   A-AATCAGT-C--TACAC------AGA----------TT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out244   A--A-CTCA-G--GTGG--T----GTG--GTTC--CCTG---AG-C----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out245   ------------------------TTC---------TTTCT---GA-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out246   A-AATCAAC-C--CACCC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out247   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out248   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out249   T-AAACTGT-C--CATCCAA----------------ATTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out250   -------AC-T--CATG--T----TGA--AGTC--AGGT---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out251   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out252   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out253   C--A---------------------AC--GAGC--CCAT---CCAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out254   A--ACCAGC-C--CACC--C----AGA--TTCA--AGTT---TCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out255   G-AATCAGC-C--CATCC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out256   G-AACCAGA-T--AACCC------ATG----------TTCA---GG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out257   A--A-------------------------CAGA--CCAC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out258   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out259   G-AACCAGC-C--CACCC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out260   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out261   G-AACCAGA-C--AACTC------AG----------GTTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out262   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out263   A--ACCAGC-T--CACC--C----AGA--TCAA--AGTC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out264   A--ACCAGC-C--CATC--C----AGT--TTTA--AGTC---TCCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out265   ---------------TTCCCTGTGGT----------GTTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out266   A--C-TTGT-C--CACC--C----AGG--TTTA--AGTC---CTGG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out267   G-AACCAGC-C--CACTC------AG----------GTTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out268   G-AACCAGC-C--CATCC------AGA----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out269   G-TACCGGT-C--CATCC------AAG----------TTCA---AA-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out270   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out271   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out272   A--ATCAGC-C--CACC--C----AGG--TTCA--AGTC---TCGG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out273   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out274   A--TGAAAC-C--CACG--C----TGG--TTCA--GCTC---TCCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out275   A-ATCTGTC-C--ACCC-AG----------------TTTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out276   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out277   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out278   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out279   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out280   A-AATCAGG-C--CATTC------AGA----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out281   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out282   G-AACCTGC-C--TACAC------AT----------GTTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out283   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out284   G-AACCATC-C--CACATAG----------------ATTCA---AA-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out285   A--AACAGC-T--CACA--C----AGG--TTCA--AGTC---TCCC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out286   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out287   G-AACCAGT-A--TA------CGCAG----------ATTTA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out288   A-AACTA-G-C--CACTC-----AGG----------TTTCG---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out289   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out290   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out291   A--ACCAGC-C--CACT--C----AGT--TTCA--AGTC---ATAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out292   G-AACCAGC-C--CATCC------AGG----------TTTA---AA-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out293   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out294   G-AATCAGC-C--CACCT------AGG----------TTCA----A-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out295   ---------------------------------------------G----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out296   A--ACCACC-C--CATC--C----AGT--TACA--AGTC---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out297   A--ACCAGC-C--CA-C--C----CGG--TTCA--AGTC---TCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out298   G-AACTAGG-C--CAACT------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out299   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out300   G-AAACAGG-C--ACCCA------TGT----------TCAA---GT-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out301   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out302   A--ATCAAC-C--CACC--T----AGG--TTCT--AATC---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out303   G-AACCAGC-T--CACCC-----CTG----------GTTCA---TG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out304   A-AACCACT-T--CG------CCCAG----------ATTCA---GA-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out305   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out306   G-AACCAGT-A--GACTC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out307   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out308   G-AACCATC-A--ACCCAAG----------------TTCAA---GT-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out309   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out310   G-AACAAGC-C--CACCCAAGTTCCAGTGGCGGAACCAGCC---CA-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out311   G-AACCTGC-C--CACAC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out312   G-AACCAGC-C--CACTT------GGA----------CT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out313   G-AACCAGC-C--CACCC------AGA----------TTCA----A-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out314   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out315   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out316   A--ACCAGC-C--CATC--C----AGA--TTCA--AGTC---ACAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out317   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out318   A-AACCAGC-C--CATCC------AGG----------TTCA---AA-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out319   A--ACCAGC-C--ATCC--A----CGT---TCA--AGTC---TCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out320   A--ACCAGC-C--CATC--C----AGT--TTCA--AGTC---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out321   G-AACCAGC-C--CACCC------AAA----------TTCA----A-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out322   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out323   G-AACCAGC-C--CACCC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out324   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out325   G-AACCAAC-T--CACTAATGCATGG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out326   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out327   G-AAACAGT-C--AACCTAG----------------ATTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out328   A--ACTGAC-T--CACC--C----AGG--TTCA--AATC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out329   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out330   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out331   G-AACCAGC-T--CACCGATATTCAA----------TTCGT---AT-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out332   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out333   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out334   G-AACCAGT-C--CACTG------AGG----------TTCA----A-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out335   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out336   A--ACTAGC-C--CACC--T----AGG--TTCA--AGTC---TCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out337   C--CGTCC--A--GTTT--C----AGG--ATAA--AGAT---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out338   A-AATCTGC-C--CACCT------AGG----------TTGA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out339   T--TCCAAC-C--CACC--C----AGG--TTCA--AGTC---CCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out340   G-AACAGGT-C--CATTC------AG----------ATTC----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out341   G-AACCAAC-C--CACCC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out342   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out343   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out344   A--ACCAAC-C--CACT--C----AGG--TTCA--AGTC---TCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out345   A-AATCAGC-C--CACTC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out346   G-AACCAAC-T--CAACT------CAC----------TGGTTTAAG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out347   A--ACCAGC-C--CACC--C----AGG--TTCA--AGTC---TCCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out348   A--ACTAGC-C--CACC--C----AGG--TTCA--AGTC---CCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out349   G-AACCAGG-C--CACTCTC----------------TTTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out350   A--ATCAGT-C--TACT--C----AGG--TTTA--AGTC---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out351   A--ACCAGC-C--CACC--C----AGG--TTCA--AGTC---CCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out352   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out353   G-AACCGGC-C--CACCT------AAA----------TTTA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out354   G-AACTAGC-C--CACCC------ACG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out355   G-AACTAGT-C--CACCC------AAG----------TTCA---TG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out356   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out357   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out358   G-AACCAGC-C--CACCC------TGG----------T------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out359   A-AATCAGC-C--CACCC------AAG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out360   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out361   G-AATCAGC-C--CACCC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out362   A--ATCACT-T--CACA--C----GGA--TTCA--AGTT---CCAT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out363   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out364   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out365   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out366   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out367   G-AACCAAC-C--AA-CC------CGG----------TTCA---AT-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out368   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out369   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out370   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out371   A-AACCATC-T--CACCCAGTTTCAA----------GTTC----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out372   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out373   T--GGTCTG-G--TTGC--T----TGG--TTCA--CGTA---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out374   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out375   A-ACT--------CAGTCCAT-TCAA----------ATCCA---AA-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out376   G-GACCAGC-C--CACCT------AAG----------TTCA---AG-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out377   A---ACCGC-C--AACA--C----AGG--TTCA--AGTC---TCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out378   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out379   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out380   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out381   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out382   A-ACCAGTC-G--GTTCAT--------------------------G-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out383   A--ACCAGC-C--CACC--C----AGA--TTCA--AGTC---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out384   G-AACCAGC-G--CACCC------ACG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out385   G-AATCAGC-C--CACCC------AGT----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out386   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out387   G-AACCAGC-C--CACCC------AGT----------TTCA----A-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out388   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out389   G-AACTAGC-C--CACCC------AG----------ATTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out390   ------------------------------CTT---GTG---GAGG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out391   A--ACCACC-T--CTCC--A----GGT---TCA--AATA---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out392   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out393   A--AAACTA-G--CAAC--C----CGG--TTCA--AATC---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out394   A--ACCAGC-C--CACC--C----AGG--TTTA--AGTC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out395   A--ACCAGC-C--CATC--T----AGA--TTCA--AGTC---TCCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out396   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out397   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out398   A--AACAGC-C--CACT--C----AGG--TTCA--AATC---TCCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out399   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out400   -------------------CATTCAT----------GTTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out401   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out402   ---ACAAGC-C--CACC--C----AGG--TTCA--AATC---CTGC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out403   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out404   A--ACCAGT-C--TATC--T----AGA--TTCA--AGTC---TTCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out405   G-AACAATT-C--CACCTAA----------------GTTCA---AC-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out406   G-AAACTAA-C--C------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out407   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out408   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out409   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out410   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out411   -------------------------------------------TTA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out412   G-AACCAGC-C--CGACA------TGA----------GTGC---TC-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out413   G-AGTTCGT-C--T------ACACAG----------GTTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out414   A--ACCACA-A--CACC--C----AGG--CTCA--AGTC---T-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out415   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out416   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out417   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out418   A--TCCAGC-C--CATT--C----AGG--TTCA--AGTC---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out419   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out420   A--ACTATA-C--CACA--C----AGG--TTCG--AGCT---CCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out421   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out422   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out423   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out424   A--ACCAAC-C--CATC--C----AGG--TTTA--AATC---TCCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out425   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out426   G-AACCAGC-C--CACAC------AGA----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out427   A--ATCAGC-C--CACG--C----AAG--TTCA--AGTT---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out428   A--ATCAGC-G--CACA--C----AGT--TTTA--AGTC---TCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out429   G-AACCAGC-C--CATAC------AGA----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out430   A--ACCAGT-T--CACC--C----AGG--TTCA--AGTA---ACAC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out431   A--AACAGC-C--CACC--C----AGG--TTCA--AGTC---TTCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out432   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out433   C--A---------------------GA--TTCA--TGTC---ATAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out434   T-AATCAGC-C--TATCC------AGG----------TTTA---AA-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out435   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out436   G-ACCAAAC-C--------------C----------ACCCA---AG-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out437   G-AACCAGT-C--CACTC------AGA----------TTTA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out438   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out439   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out440   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out441   A--ATCAAC-C--CACT--C----AGG--TTCA--AGTC---CTAC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out442   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out443   A--ACCAGT-C--CACC--C----AGG--TTTA--AGTC---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out444   --------G-T--GGTG--G----AAT--CAGC--CCAC---CCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out445   G-AACCAAC-C--CACAC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out446   A--ACTAGC-C--CATT--C----AAA--TTCA--AGTC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out447   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out448   --------------ACC--C----AGG--TTCA--AGTC---GTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out449   A--ACCAAT-C--GACC--C----AGG--TTT-----------AAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out450   A--ACTAGC-C--CACC--C----AGG--TTCA--ACTC---ACTG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out451   A--ACCAGC-C--CACC--C----AGG--TTCG--AGTG---CCAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out452   ---------------------------------------------G----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out453   A--ACTAGC-C--CACC--C----TCA--TTCA--AGTC---ACAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out454   T--ACCAGG-C--AACC--C----AAG--TTCA--AGTC---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out455   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out456   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out457   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out458   A--ATCAGC-C--CACC--C----AGG--TTCA--AGTC---CTTG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out459   G-AACCAGT-C--CACCG------AGA----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out460   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out461   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out462   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out463   ----GGAAC-C--CACT--C----AAA--TTTA--AGGC---ACAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out464   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out465   A-AACCAGC-C--CACCTAG----------------GTTTA---AA-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out466   A--AACAAT-C--CACC--C----GAG--TTCA--AGTC----GTA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out467   G-AACCAGC-C--CACCC--------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out468   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out469   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out470   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out471   C-AGGTTC--------------------------------A---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out472   A--AACAGT-C--ACCC--A----GGT--TTA---AGTC---TTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out473   G-AACCAGT-C--CACTC------AGG----------TTCA---A-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out474   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out475   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out476   G-AAACCAA-C--CATCC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out477   ------------------------AG----------GTTCA---AA-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out478   A-AAACATC-A--CACAC------ATG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out479   G-AACCAGC-C--TACCC------AAA----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out480   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out481   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out482   G-AACCACC-C--CACCG------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out483   ------------------------------------GGTTA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out484   G-AACGAGC-A----CTC------TAG----------TTTA---AA-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out485   G-AAACGGT-C--CATCC------AGT----------TT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out486   A--ACCCGC-C--ACCC--A----G----TTCA--AGTC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out487   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out488   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out489   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out490   A--ACCAGC-C--CACT--C----AGG--TTCA--AGTC---TCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out491   --------------------------------------------GG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out492   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out493   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out494   A--ACCAGC-C--CACC--C----AAG--TTCA--GTTC---CCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out495   A--ACTAGC-C--CACA--T----AGG--TTCA--AGTT---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out496   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out497   A--ACCAGC-C--CACC--C----AGA--TTCA--AGTC---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out498   G-CACCAGC-C--CATCGAG----------------GTTTG---AA-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out499   A--ACCAGC-C--CAAC--C----AGA--TCAA--AGTC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out500   G-AACCATC-G--CCACACA---------------AGTTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out501   ---------------CC--C----AGA--CGTA--ACAC---AT-A----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out502   G-AATCAGC-C--CACTC------AGG----------TTCA----A-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out503   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out504   C-AACCAGC-C--CATTC------AGG----------TTTA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out505   G-AACCGGC-C--CACCC------AGA----------TTCA----A-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out506   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out507   A--ACCAGC-A--CATA--C----ATG--TTCA--AATC---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out508   A--ATCAGC-C--CACC--C----AGG--TTTA--AGTT---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out509   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out510   A--ACCAGC-C--CATC--C----AGG--TTCA--AGTC---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out511   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out512   G-AATCAGC-C--CACCC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out513   A--ACCAGC-C--CATC--C----AGG--TTCA--AATC---CCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out514   G-AACCAAC-T--CACCT------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out515   A--ACCAGC-T--CACC--C----AGG--TTCA--AATC---CCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out516   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out517   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out518   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out519   A--ACCAAC-C--CACG--A----AGG--TTCA--AGTA---TTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out520   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out521   T-AACCAGC-G--CACAC------AGA----------TTCA---AA-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out522   ----------C--CACC--C----AAA--TTCA--AGTT---TCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out523   A--ATCATC-C--CATC--T----ATG--TTCA--GTTT---TAGA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out524   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out525   G-AACCAGC-C--GACCC------AGG----------TTCA----A-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out526   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out527   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out528   A--ACCAAC-C--CACA--C----AGG--TTCA--ATTC---TCCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out529   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out530   G-AACCAGC-C--CACCC------AGA----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out531   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out532   C-AAACAGC-C--CACGC------AGG----------TTCA---AG-TCC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out533   G-AACCAGA-C--CACTC------AGG----------TTTA---AA-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out534   A--ACCAAC-A--CACC--C----AGA--TTCA--AGTC---TTGG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out535   A--C-CAAC-C--CACC--C----AGG--CCCA--GGTT---C-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out536   G-AACCAAC-A--CACCCAG----------------ATTAA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out537   G-AACCAGC-C--CACCC------AGG----------TCCC---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out538   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out539   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out540   T-AACCAAC-C--CACAC------ATG----------TTTT---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out541   A--ACCAG-----TCAC--C----CAA--ATCA--AGTC---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out542   G-AACCAGC-C--CACCC------AGA----------TTCA---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out543   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out544   A--ACCAGA-G--CCCACAC----AGG--TTTA--AATC---CCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out545   G-AACCAGC-C--CATTC------AGG----------TTCA---AA-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out546   A--ACCAGC-C--CACC--C----AGG--TTCA--AGTT---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out547   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out548   G-AACCAGC-C--CACCC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out549   A--ACCAGC-A--CACC--C----AGG--TTCA--AGTC---CCAC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out550   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out551   -----------------------------AAAC--CAGC---CACC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out552   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out553   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out554   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out555   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out556   A-AAC--------CAGCCCAT-TCAG----------ATTCA---AT-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out557   T--GTGGTG-C--CACC--C----AGA--TTCA--AGTC---TCCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out558   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out559   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out560   A-AACTAGC-C--CAT-------CTA----------GTTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out561   G--AACCAG-C--CTTT--A----AGG--TTCA--AGTT---TTCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out562   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out563   --------------------------G--TTCA--AGTC---AT-A----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out564   ----------------C--C----AGG--TTCA--AGTC---CT------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out565   -----AGCC-C--ATCC--A----GTT--CAGG--TCTT---AGAC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out566   A--ACCAAT-C--CACC--C----AGG--TTGA--AGTC---ATAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out567   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out568   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out569   A--ACAAGC-T--CACT--C----AGA--TTCA--AGTT---CCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out570   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out571   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out572   G-CAACAAC-T--CATTC------AAG----------TTCA---AC-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out573   A--ACCAGC-C--CACC--C----AGG--TTCA--AGTC---CCCT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out574   G-AACAAGC-C--CAC-------CTA----------GTTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out575   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out576   A-AACCAGC-C--CACCT------AA-----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out577   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out578   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out579   G-AATCAGT-C--CACAC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out580   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out581   G-AAGAAAT-C--CACAT------AGG----------TTGA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out582   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out583   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out584   G-AACCAGC-T--CACTC------GGG----------TTCA----A-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out585   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out586   A--ACCAGC-C--TATC--C----ATG--TTCA--AGTC---ATAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out587   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out588   A--A-CTCA-G--GTGA--T----TTG--GTTC--CTTG---TGGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out589   G-AGCCTAA-C--TCAGG------TGA----------TTTGGTTCC-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out590   A--ACCAGC-C--CGCT--C----AGG--TTCA--AATC---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out591   A--ACCAGC-C--CATC--C----AGG--TTCA--AGTT---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out592   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out593   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out594   A-AACCGGC-A--TAGTTAG----------------ATTCG---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out595   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out596   A--ACCAGT-C--CACT--C----ATG--TTTA--AATT---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out597   A--ACCAGC-C--CACA--C----AGG--TTCA--AGTT---TCCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out598   A--TGAGTG-C--TCGC--G----TTG--TTCA--AGTT---TCCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out599   A--ACCATC-C--CATC--C----AGG--TTCG--AATC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out600   -----GAGC-T--GAGC--C----TAA--TTCA--GGTG---GTCT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out601   A--ACTAGT-T--CACC--A----AGG--TTCA--AGTC---CCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out602   ---------------TC--C----AGG--TTTA--AATC---TCCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out603   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out604   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out605   A--ACCAAT-C--CACA--C----AGA--TTCA--AATC---TTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out606   A--ACCAAC-C--CACC--C----ATG--TTCA--AGTC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out607   A--ACCAGC-C--CACC--C----AGG--TTCA--AGTC---TCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out608   ------------------------------------GTC---TTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out609   A-AAGTAGC-C--CACCG------AGT----------TCAA---GT-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out610   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out611   A--ACCAAC-C--CACC--C----AGG--TTCA--AGTC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out612   G-AACCAAC-C--------CAGACAG----------ATTTA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out613   --------------------------------------------GG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out614   G-AATCAAC-C--CACTC------AGG----------TTCA----A-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out615   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out616   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out617   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out618   -------------------------GG--TTTG--GTTC---ATAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out619   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out620   A--ACCAAC-C--CATC--C----AGT--TTCA--AGTC---ATAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out621   ----------------C--T----AGG--TTCA--AGTC---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out622   A-AACCAGC-C--CACCCAGGTTAAG----------TTTCA---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out623   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out624   G-AACCAGT-C--CATCC------AAA----------TTCA---AG-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out625   G--GTGGAA-C--ATGT--T---------------AAGT---TTCC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out626   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out627   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out628   ------------------------------TTA--GGAC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out629   C-AACCTAC-A--ACTAGTC----------------CAACT---CA-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out630   G-AACCAGT-C--CACGC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out631   G-AACCAGC-C--CACCC------AAG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out632   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out633   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out634   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out635   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out636   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out637   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out638   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out639   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out640   --AATCAGC-C--CACCC------AGG----------TTCA----A-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out641   A--ACCAGC-C--CACC--C----AGA--TTTA--AATA---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out642   A--ACCAGC-C--CACT--C----AGG--TTCA--AGTC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out643   G-AATCAGC-C--CACCC------AGG----------TTCA---AA-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out644   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out645   C--GTGGAA-T--CAGT--T-----CA--CCCC--ATTC---AGAT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out646   --------------------------------------------GG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out647   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out648   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out649   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out650   A-AACAATC-T--TA------CACAT----------ATTTA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out651   A-AACCAGT-T--CTCGC------AGA----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out652   A--ACCAGG-C--CACC--T----AGG--TTCA--AGTT---TTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out653   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out654   G-A------------------------------------AC---CA-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out655   --------C-C--AACC--C----AGA--TTCA--AATC---ACA-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out656   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out657   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out658   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out659   G-AACCAGC-A--CACTC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out660   A-AACCAAC-C--CACCC------AAG----------TTTA---AT-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out661   C-AACTAGC-C--CACCC--------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out662   A-ACAGCTC-A--CC--------CAA----------GTTAA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out663   ----------C--CACA--C----AGA--TTGA--AATC---TCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out664   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out665   -----------------------------TTCA--AGTC---ATAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out666   -------------------------------------------GAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out667   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out668   A--CTAAACGT--AGCT--G----ATC--T-G-----------GTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out669   G-AACCAGT-C--CACCC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out670   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out671   A--ACCA-------------------------A--CCCA---CCTG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out672   A--ACCTGC-G--CATC--T----AGG--TTCA--AGTA---TTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out673   ---------------CT--C----AGG--TTCA--AGTG-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out674   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out675   G-AATCAGT-C--CACCC------AGG----------TTCA---A-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out676   -------------------------G----------GTTCA---AA-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out677   -------------------------------------------TGA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out678   G-AACCAGC-C--CGCCT------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out679   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out680   G-AACCAGT-A--CACCC------AA----------GTTTA---CG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out681   G-AACCCGT-C--CACCC------AAG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out682   A--ACCAGC-T--CACT--C----AGG--TTCA--AGTC---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out683   G-AACCAAC-C--CATCCATGTGCAAGTTGT-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out684   G-AATCAAA----CCAC------TCA----------GTTCA---AT-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out685   G-AACCAGT----TCAC------CCA----------GTTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out686   ------AGC-C--TACC--C----AGG--TTTA--AGTC---TCTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out687   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out688   A--ACCAGC-C--CATT--C----AGA--TTTA--AGTT---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out689   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out690   G-AATCAGA-C--CATTT------AGG----------TTCA---AA-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out691   A--ACCAAC-C--CACC--C----AGG--TTCA--AGTT---CCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out692   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out693   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out694   A-AACCAGC-T--CACAT------AGG----------TTTT---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out695   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out696   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out697   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out698   A--ACCAGC-T--CGTC--C----AGG--TTCA--AGTC---TCCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out699   A--ACCAGC-C--CACC--C----AGA--TTCA--AGTT---TCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out700   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out701   A--ACCAGC-C--CATC--C----AGG--TTCA--AGTT---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out702   G--ACCAGC-C--CACC-------AGG--TTCG--AGTT---CCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out703   A--ATCAGA-C--TACT--C----AGG--TTTA--ATTT---TTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out704   A--ACCAGC-C--CACC--A----AGG--TTCA--AGTC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out705   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out706   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out707   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out708   A--ACCAAC-C--TACT--C----AGA--TTCA--AGTC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out709   -----CAAC-C--CACC-------CAG--ATTC--ACTT---CTAT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out710   A-AACCAGC-C--CATCC------GAG----------TTCA----A-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out711   G-AACCAGC-C--CACTT------AGC----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out712   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out713   -----CACC-C--AGGT--C----C-------A--AGTC---TCCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out714   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out715   A-AAACAGT-C--CACCC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out716   --------------------------------------------GG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out717   G-AACCGGG-C--CACTCGT----------------GTCTA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out718   A-AACTAGC-C--AACTC------AGG----------TTTA---GG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out719   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out720   G-AATCAGC-A--CACCC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out721   G-AACCAAT-T--CATCC------AG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out722   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out723   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out724   G-AATTAGC-C--CACCC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out725   A--ACCAGC-C--CACC--C----AGG--TTCA--AGTC---TCTG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out726   A--ACCAGC-C--CATT--C----AGG--TTCA--AGTT----TTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out727   A--ACCAGC-C--CACC--C----AGG--TTCA--AGTC---CGAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out728   T-AGGCCCA-C--CCAGG-------------------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out729   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out730   ----------------C--C----AGA--TTCA--AGTT---CCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out731   GGAACCAGC-C--AACT--T----AGA--CTCA--ATC------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out732   --------------------------C--A-A----GTC---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out733   G-AACCAGC-T--ACCCAAG----------------TTCAA---GT-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out734   A--ACCAGC-C--CACC--C----AGG--TTCA--AGTC---CCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out735   G-AACCAGT-C--CACAC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out736   T--TGTGGT-G--GAAC--C----AGA--TTTA--AGTT---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out737   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out738   G-AATCAGC-C--CACC------CAG----------GTTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out739   G-AAGTAGC-C--CACAC------AGA----------TTCA---AC-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out740   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out741   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out742   A-AACCAGC-C--CACCC------AGA----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out743   -------------ACCC--A----GGT--TCCA--AGTC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out744   A--ACAGTC-C--ATCC--A----ACT--TCAA--GTCC---TAGA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out745   A--ACCAGG-C--CACT--C----AGG--CCTA--AGTT---TCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out746   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out747   G-AATCAGC-C--CACCC------AGG----------TTCA----A-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out748   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out749   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out750   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out751   C--A-CAAT-C--AGCT--C----ACC--CAGG--TTCA---ATAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out752   A--ACCAGC-A--CACC--C----CGG--TTCA--AGTA---ACAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out753   G-AACCAAC-C--CA------TCCAG----------ATTCA---AA-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out754   G-AATCAGT-C--CACTC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out755   G-AACCAGC-C--CACCC------AAA----------TGCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out756   AAACAAGCC-C--ACCC--A----GGT--TCAA--AGTC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out757   A--ACAAGC-C--CATC--C----AGG--CTCA--AGTT---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out758   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out759   A--ACCAGC-----ACC--C----AGG--TTCA--AGTC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out760   A--ATCAAC-T--CACC--C----AGG--TTCA--AGTC---CTGA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out761   T-AACCAGC-T--CACGC------AGG----------TTGA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out762   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out763   A-AACTATC-C--CACGC------AGT----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out764   A--ACCGTC-C--CATC--C----AGG--TTTG--GCAT---GGGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out765   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out766   A--ACCAGC-C--CACG--C----AGA--TTCA--AGTC---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out767   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out768   A--ATCAGC-C--CACC--C----AGG--TTCA--AGTC---CCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out769   A-AACCAGC-T--CACCC------AAA----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out770   A--ACCAGC-C--CACC--C----AGA--TTCA--AGTC---TCCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out771   A--ACCAAT-C--CATC--C----AGA--TTCA--AGTC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out772   G-AACCAGT-C--CATCC------AGG----------TTTA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out773   G-AATCGGC-C--CATCC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out774   T-AAT--------CAGTCCAT-CCAA----------GTTCA---AC-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out775   G-AACCAGC-C--CACCA------GGT----------TCAA---GT-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out776   A--ACTAGC-C--TACC--C----AGA--TTCA--AGTT---TCCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out777   ----------------C--C----AGG--TTCA--AGTC---CT------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out778   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out779   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out780   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out781   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out782   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out783   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out784   A--ACCCGC-C--CATC--C----AGG--TTGA--AGTA---CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out785   G--AACCAG-C--CCACC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out786   A--ACCAGC-C--TATC--C----AGG--TTCA--ACTC---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out787   --------------------------G--CTCA--AGTC---CAAC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out788   A-AATCAGC-C--TAACT------AG----------ATCCA---AT-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out789   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out790   A--ATTAGC-C--TACC--C----AGG--TTCA--AGTC---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out791   G-AACCAGC-C--CACAC------AGG----------TTCA----A----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out792   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out793   A--ACCAGC-C--CACC--C----AGG--TTCA--AGTC---TTCA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out794   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out795   A--ACCATC-C--CACT--C----AGG--TTCA--AGTC---ATAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out796   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out797   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out798   A--ACCAGC-C--CATC--C----AGG--TTCA--AGTC---TCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out799   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out800   A--ACCAGC-C--CACC--T----AGG--TTCA--AGTC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out801   A--A---------------------AC--CAGC--CCAC---CCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out802   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out803   G-AACCAGC-C--C------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out804   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out805   A--ATCAGC-C--CACC--A----AGG--TTCA--AGTC---TTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out806   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out807   A--ATCAGT-C--CACC--C----AGG--TTCA--AGTC---TTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out808   A--ACCAGC-C--CACC--C----AGA--TTCA--AGTT---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out809   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out810   A--ACCAGT-C--CAAC--C----AGG--TTCA--AGTC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out811   --------------------------------------G---TT-C----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out812   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out813   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out814   A--ATCAGCTC--ATTT--G----TGT--T-A----CGT---TCTA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out815   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out816   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out817   G-AACTAAC-C--CACAC------AGG----------TTCA---GG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out818   ------------------------------GTT--CAAG---TC-G----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out819   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out820   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out821   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out822   A--ACCAGG-C--CATA--C----AGT--TTCA--AGTC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out823   A--ATCAGT-C--CATC--C----AGG--TTCA--AGTC---TCCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out824   A--TCTAGT-C--CACC--C----AGG--TTCA--AGTC---ACAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out825   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out826   G-AACCAGC----CCACT------TAG----------GTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out827   A--ACCAGC-T--CACC--C----AGG--TTCA--AGTC---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out828   A--CCAACC-C--CACC--T----AGG--TTCA--AGTC---ACAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out829   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out830   G--GTGAAA-T--ATCT--C----AGG--TTTA--AGTC---TTCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out831   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out832   G-AACCAGC-T--TACCC------AAG----------TTCA----A-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out833   G--TTCACT-C--AGTT--T----G-------A--AATC---TCTG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out834   G-AACCAGC-C--CACTC------AGG----------TTCA----A-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out835   ------------------------------CTA--GATA---CAAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out836   G-AACCAGA-C--CA------CCCAG----------GTTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out837   -------------------------------------CC---GAGC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out838   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out839   A--ACCATC-C--CACT--C----AGA--TTCA--AGTC---TTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out840   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out841   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out842   A--AGCAGC-C--CACC--C----AGG--TTCA--AGTC---TCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out843   A-AACTACT-T--CAACCAA----------------GTTTA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out844   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out845   G-AAC--------C---AGAT-CCGG----------TTTGT---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out846   A--AAT-----------------------------AACC---CAGG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out847   G-AACCAAA-A--CCACC------TGG----------GTTC---AA-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out848   A--ACCAGC-C--CACC--C----AGG--TTCA--AGTC---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out849   A--ACCAGC-C--CA-C--C----CAG--TTCA--AGTC---TCCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out850   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out851   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out852   G-AACCAGT-C--CACCC------AGG----------TTCA---A-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out853   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out854   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out855   T-AACCAGC-T--CATCC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out856   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out857   G-AACCAAC-C--CATTC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out858   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out859   G-AACCAGT-C--GAACCAG----------------CTGAC---CC-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out860   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out861   A-AACTAGC-C--CACCC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out862   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out863   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out864   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out865   A--ATTATC-C--CACA--C----AGG--TTCA--AGTT---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out866   G-AACCAGC-C--CACCC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out867   C-AACCAAC----CCACTCA---------------GGCTAA---AT-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out868   G-AAACAGC----TCAC------AAG----------GTTCA---AT-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out869   -----------------------------TCCG--ATTC---CTTG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out870   G-AACCAAC-C--CACCA------GGT----------TTAA---GT-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out871   A--ACAAGC-C--CACC--C----AGG--TTCA--AGTC---ACAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out872   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out873   G-AACCAGC-C--CACCC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out874   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out875   A--ACCAGC-C--CACC--C----TAG--TTCA--AATT---CCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out876   A--ACCAGC-C--CACC--C----AGG--TTCA--AGTC---CCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out877   A--ACCAGT-C--CACC--C----AGG--TTCA--AGTC---TCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out878   A-AACCAGC-C--CACGC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out879   A--AGAAT--C--CCAC--C----GTG--TTCA--ACTC---TTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out880   G-AA---------CAATCTTACTTGG----------GCTCA---AT-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out881   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out882   G-AACAAGC-C--AACC---------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out883   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out884   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out885   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out886   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out887   G-AACCAGG-----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out888   G-AACCAGT-C--CACCC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out889   A--ACCAGC-C--CAAC--C----AGG--TTCA--AGTC---TCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out890   --------------------------------------CTT---GT-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out891   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out892   G-AATCAGC-C--CACCC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out893   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out894   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out895   A-AATCGGC-C--CACCC------AGA----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out896   G-AACCCAT-C--CACCC------AGG----------TTCA---AA-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out897   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out898   A--ACCAAC-C--CACT--T----AGA--TTCG--AATC---CTAC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out899   G-AACCAAC-C--CACTC------AGG----------TATA---AA-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out900   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out901   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out902   -------TG-T--GCCAC------ATG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out903   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out904   A--ACCGGC-A--CATT--G----AAC--TCTA--GATT---TGAC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out905   G-AACCTGA-C--CACTC------AAG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out906   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out907   -------------------------------------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out908   A--ACTAGA-C--CATC--C----AGA--TTCA--ACTC---TTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out909   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out910   G-AACCAGC-C--CACTGTT----------------TTCCT---AA-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out911   ------AT--C--ACCA--G----GTT--CTAG--TCCT---AGAT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out912   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out913   G-AACCAGC-T--GACG------CAG----------GTTTA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out914   A--ACCAGC-T--CAGC--C----AAG--TTCA--AGTT---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out915   --------------------------------------T---AGAC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out916   A--ACCGGC-C--CACC--C----AGG--TTCA--AGTCTCCGATT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out917   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out918   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out919   A--GAACC-----AACT--T----AGA--TTCA--AGAC---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out920   A--ACCAGT-C--TACG--C----AGG--TTCA--ACTC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out921   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out922   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out923   G-AACTGGC-T--CACTC------AGG----------TCCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out924   G-AATCAGC-C--CACCC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out925   A--C-CAGC-C--CACC--C----AGG--TTCA--AGTC---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out926   G-AACTAGC-C--CACCC------AAG----------AGCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out927   A--ACCAGC-C--CACC--C----AGG--TTCA--AGTC---TCCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out928   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out929   G-AGCAAAC-C--CAGTC------AA----------GTTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out930   A--ACCAGC-C--CACC--A----AAG--TTCA--AGTC---CCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out931   G-AACCAAT-C--CACTC------CAG-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out932   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out933   A--ACCAGC-C--CATC--C----AAG--TTCA--AGTC---ACAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out934   A--ACTAGC-C--GATC--C----AGG--TTCA--AATC---CTGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out935   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out936   --------------------------------------G---TC-C----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out937   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out938   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out939   -------------------------CA--TTCA--GATT---C-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out940   G--GTTCCT-T--GTGG--T----AGG--TTCA--AGTC---TCCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out941   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out942   A--ACCAGC-C--CGCC--T----AGG--TTCA--AGTC---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out943   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out944   G-AAACATC-C--TACCA------AGA----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out945   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out946   G-AACTAGT-C--CACCC------AGG----------TTCA---AC-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out947   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out948   A-AACCAGC-C--CATCC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out949   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out950   A--ACTAAC-C--CATC--C----AGG--TTCA--AGTC---TACT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out951   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out952   A--ATCAAC-C--CATC--C----AGG--TTCA--AATG---CTAC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out953   A--ACCAGC-C--CACG--C----AGA--TTCA--AGTT---CTTG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out954   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out955   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out956   A-AACCTGT-C--CACCC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out957   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out958   G-AATCAGC-C--CACCT------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out959   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out960   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out961   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out962   G--A---------------------AC--GAGC--CCAC---CCAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out963   A--ACCAGC-C--CACC--C----AGG--TTCA--AGTC---TCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out964   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out965   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out966   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out967   A--ACCAGC-C--CACAC------AGG----------TTCA---AA-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out968   A-AATTAAC----CCACT------CAG----------GT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out969   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out970   G-AACCAGT-C--CACCC------AGG----------TT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out971   A--ATCAGT-C--CATC--C----AGG--TTCA--ATTT---CTAC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out972   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out973   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out974   A--ATCAGC-G--TAAC--C----AGA--TTCA--AATC---TCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out975   T-AATCAGC-C--CATCC------AGG----------TTCA----A-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out976   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out977   A--ATCAGT-C--CATC--C----ATG--TTCA--AGTC---ATAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out978   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out979   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out980   A--ATCAGC-C--CACC--T----AGG--TTCA--AATC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out981   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out982   G-AACCAAC-C--CACTT------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out983   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out984   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out985   G-AACCAAC-C--CACCT------AAG----------TTCA---AT-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out986   A--ACCAGC-C--TATC--C----AGA--TTCA--AGTC---TCCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out987   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out988   A--ACTAGC-C--CACC--C----AGG--T--------C---CCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out989   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out990   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out991   --------------------------------------------CG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out992   A-AACTAGC-C--CACCA------AGG----------TTTA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out993   A--ACCAGC-C--CGCT--C----AGG--TTCA--AGTC---TTCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out994   A--ATCAGC-C--CGCC--C----AGG--TTCA--AGTC---TCTG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out995   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out996   A--ACCAGC-C--CACC--C----AGG--TTAA--AGTC---TCCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out997   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out998   A--ACCAGT-C--CATC--C----AGA--TTCA--AATC---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out999   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1000  A--ACTGGT-C--TACC--T----AGA--GTTA--AATC---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1001  A--ACCCAT-C--CACA--C----CGG--TTCA--AGTC---AT-G----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1002  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1003  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1004  T-AACCAGT-C--CATTCAA-----------------GTTC---GG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1005  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1006  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1007  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1008  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1009  A--ATCAATGC--ATCT--G----AAT--TCAA--AGCC---ATAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1010  A--ACCAAC-C--CACC--C----AGG--TTCA--AGTC---CTAT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1011  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1012  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1013  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1014  C--C---------------------AG--GTTG--AGTC---TGCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1015  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1016  T-AACCAGC-G--CACCC------AGA----------TCCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1017  A-CCAACCT-A--CC--------AAA----------GTTAA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1018  G-AATCAGC-CCACTCAC------GCT---------TCAAA---AC-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1019  A--ATCAGC-C--CACC--T----AGG--TTCA--AGAC---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1020  -------------------G----TGG--CCTG--GTTT---C-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1021  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1022  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1023  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1024  G-AAAAATC-C--ATCCAAG----------------TTCAA---GT-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1025  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1026  G-AATCAGC-C--CACCC------AGA----------TTCA----A-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1027  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1028  ----CCAAC-C--CAGC--C----AGC--TTCA--AGTC---ATGCAAGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1029  G-AAC--------CAGTTCAT-TCAG----------GTTCA---AA-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1030  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1031  A--ATCAGA-C--CACC--C----AGG--TTCA--AGTT---TCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1032  A--CCTAAC-A--CATC--T----AGA--TTCA--AGTT---TCTG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1033  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1034  A--ACCAGC-C--CACC--C----AGG--TTCA--AGTA---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1035  A--ACCAGC-C--GACC--C----AGG--GTCA--AGTC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1036  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1037  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1038  G--ATGGAA-C--CAGC--C----CAG--TTCA--AATC---TCCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1039  G-AATCAGC-C--CACCA------AGG----------TTTA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1040  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1041  A-ACCAC-G-C--CACCC------TGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1042  ------------------------------------AAC---TAAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1043  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1044  A--ACCAGC-C--CACC--C----AGG--TTCA--AGTC---CCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1045  A--ACCAAT-C--TATT--C----AAG--TTCA--AATC---TTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1046  G-AACTAGC-C--CAATT------AAG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1047  G-AACCAGC-C--CACCG------GCT----------CAAC---TC-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1048  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1049  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1050  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1051  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1052  G-AACCTGC-C--GATCA------AGG----------TTCA---AT-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1053  T-AACCAGC-T--CA--------CAC----------GTTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1054  G-TCTGGCC----CACCC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1055  G-AATCAGA-C--CATCATTATGGTG----------GAATC---AG-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1056  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1057  G-ACCCAAC-C--TACCGAG----------------ATTCA---AG-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1058  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1059  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1060  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1061  ---------------------------------------------G----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1062  G-AACCAAT-C---------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1063  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1064  A--ACCAAC-T--CACC--C----AGG--TTCA--AGTC---TCCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1065  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1066  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1067  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1068  G-AACTAGC-C--CACCC------AGG----------TTTA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1069  A--ACCAGC-C--CACC--C----AGG--CTCA--AGTC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1070  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1071  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1072  A--ACCAGC-C--CACT--C----CGG--TTCA--AGTC---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1073  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1074  A--ACTAGT-C--CACC--A----GTA--TTTA--AATC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1075  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1076  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1077  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1078  A--ACCAGC-C--CACC--C----AGA--TTCA--AGTC---TCCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1079  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1080  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1081  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1082  G-AATCAGC-T--CACCC------GAG----------TTCC---AG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1083  A--ACCAAC-C--TACA--C----AGT--TCAA--GTTT---TAGA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1084  G-GTCTGGT-C--TA------CTCAG----------GTTTA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1085  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1086  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1087  A--AACAGT-C--CGTC--C----AGA--TTTA--TGT------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1088  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1089  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1090  A-AATTAGG-C--TATTC--------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1091  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1092  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1093  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1094  G-AATCAAC-C--TACTC------AGA----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1095  G--TTCCTT-G--TGGT--G----GAA--CCAG--CACA---CCCA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1096  ---GTGAAC-T--GAGC--C----TAG--TTCA--GGTG---GT-G----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1097  A-AAGTAGT-C--AACTCAG----------------GTCCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1098  A--ACCAGC-C--CACC--C----AAG--TTCA--AGTC---TCCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1099  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1100  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1101  A--ACCAGC-C--AACC--C----AGG--TTCA--AGTC---TCCA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1102  C--C-CGCC-C--CCCT--T----TAG--ATCT--AAGG---TCTA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1103  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1104  A-ACCAACC-C--ACCCA------GGT----------TCAA---AA-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1105  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1106  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1107  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1108  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1109  A--ACCA---G--CCCATAC----AAG--TTCA--AGTC---ACAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1110  G-AACCAGC-C--CACCC------AGG----------TTCT---AA-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1111  A--ATCAAC-C--CATC--C----AGA--TTCA--AGTC---TCAC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1112  G-AACCAGC-C--CACTC------AGG----------TTCA---AT-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1113  A--ACCA-G-C--CATC--C----AGG--TTCA--AGTC---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1114  A--ACCAGC-C--AACT--C----GGG--TTCA--AGTC---TTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1115  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1116  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1117  G-AACCAGC-C--TATCC------AGG----------TTTA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1118  A--ACCAAC-C--CACG--C----AGG--TTCA--AGTC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1119  A--ACCAAT-C--CACC--C----AGG--TTCA--AGTC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1120  A--ACCAGT-C--CACT--C----AGG--TTCA--AGTC---TTCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1121  A-AACCGGC-A--CACCC------ATG----------TTCA---AG-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1122  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1123  A--ACCAAC-C--ATCC--A----AGT---TCA--AGTA---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1124  A--ACCAGC-C--CACT--C----AGG--TTCA--AGTC---TCCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1125  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1126  A--ATCAGC-C--CATC--T----AGA--TTCA--AGTC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1127  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1128  A-AATCAGC-C--AACCC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1129  A--ACTAAC-C--CATC--C----AAA--TTCA--AATG---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1130  G-AACTAAC-T--CATCCAG----------------ATTCA---AA-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1131  G-AACCAGT-C--CACCC------AGG----------TTCA----A-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1132  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1133  --GAACCAA-C--CC------ATTCA----------TGTTA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1134  G-AAATAAC-C--CACCC------AGA----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1135  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1136  ---------------GT--T----C-------A--AGTC---TCTG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1137  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1138  A--ATCAGA-C--CACC--C----AGG--TTCA--AGTC---TCCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1139  G-AACCAAT-C--CAGTC------AGG----------TTTA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1140  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1141  G-AATCAGT-C--CACTCAGGTTCAA----------GTGGC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1142  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1143  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1144  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1145  --------------A------TTCAG----------GTTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1146  A--ACCAGC-C--CACC--C----AGG--TTTA--AGTC---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1147  A--ATCAAC-C--CATG--C----AGG--TTCA--AATC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1148  A--ATCAGC-G--CACA--C----AGC--TTCA--AGTC---TCAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1149  A--ACCAAT-T--CACC--C----AGG--TTCA--AGTC---CTAC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1150  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1151  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1152  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1153  A-ACCAGCA-A--CCCTCTAT-TCAG----------GTTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1154  A--ACCAAA-C--C-----------------------------AGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1155  A-AATCAGC-C--CACCGGG----------------TTCAA---CT-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1156  G-AACCAGC-C--CAACC------AG----------GTTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1157  A-AAC--------CAGCCCAT-CCAG----------GTTCA---AA-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1158  G-AACCAGC-C--CATCC------AGG----------TTCA---AA-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1159  A--GGTGGT-T--GGTT--C----AGG--TTCA--ACTC---TCCC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1160  G-AACCAGC-C--CACCC------GGG----------ACAT---GG-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1161  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1162  C-T---TGT-G--CACC----------------CATATTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1163  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1164  A--ACCAGT-T--CACT--C----AGG--TTCA--AGTC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1165  A--ACCAGC-C--CATC--C----AAG--ATCA--AATC---CCCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1166  A--ACCAGC-C--CACC--C----AGG--TTCA--AGTC---TCCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1167  G-AGCCAGC-C--CACTCAC----------------GTTTA---AA-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1168  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1169  A-AATTAGC-C--TAACAGA----------------CTTCC---AA-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1170  G-AACCGGT-C--CAAAC------AGG----------TTCA---AT-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1171  G-AACCAGG-C--CACAC------AGG----------CTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1172  A--GATGGT-T--TGGT--T----TCT--TACG--GCGA---AAAC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1173  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1174  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1175  G-AATCAGC-C--CACGC------AGG----------TTCA---AA-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1176  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1177  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1178  A--ACCAGC-C--CATC--C----AGG--TTCA--AGTT---TTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1179  T-TTTGTGG-T--GGAAC------CAG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1180  --------------------------------C--CTAG---CTCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1181  C-AATCAGG-C--CACCCAT----------------GTTGA---AA-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1182  A--AACAAT-C--CACC--T----AGA--TTCA--AGTC---ATAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1183  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1184  G-AACTATC-C--CACTC------AGG----------TTCA---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1185  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1186  G-AACCAAC-C--CATCC------AG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1187  A--ACCAGC-C--CACC--C----GGT--T-CA--AGTC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1188  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1189  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1190  G-AAATAGC-C--CACTC------AGA----------TTCA----A-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1191  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1192  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1193  G-AACCAGT-C--CACCC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1194  A--ACCAGC-C--CACA--T----AGG--TTCA--AGTT---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1195  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1196  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1197  A-GAAACCC-A--CC--------AAA----------GTTCA---TG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1198  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1199  A--ACCAGC-A--CACC--G----GAG--TTCA--AGTT---CTAT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1200  A-AATTTAC-CCACTCTC------ATG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1201  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1202  G-AGCCAGG-T--CACAT------TG----------GTTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1203  G-AACCAGC-C--CACTT------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1204  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1205  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1206  G-AACCAAC-C--CACCC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1207  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1208  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1209  G-AACTAAG-C--CAGCTAG----------------TTTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1210  A--ACCGGC-T--TACC--C----AGG--TTCA--AGAC---GTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1211  G-AACCGGC-C--CATCCA------G----------GTTTA---AG-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1212  A--ACCAGC-T--CATC--C----AGA--TTCAA-GTCC---TAAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1213  A--ACCAAA-C--CACA--C----GGG--TTTA--AGTC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1214  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1215  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1216  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1217  G-AACCAGT-C--CACTC------AGA----------TTCA---AA-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1218  ---------------CT--G----AGC--C--------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1219  A-AACCAAC-C--TACCC------GGT----------TCAA---GT-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1220  G-AACCAGT-T--CACAC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1221  A--ATCAGC-C--CACC--C----AGG--TTCA--AGTT---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1222  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1223  A--ACCAAC-C--CACT--C----AGA--TTCA--AGTC---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1224  A--ATCAGC-C--CACC--T----AGG--TTCA--AGTC---TCCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1225  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1226  A--TTCA---C--CCAC--C----AGA--TTCA--AGTT---CCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1227  -------------------C----AAG--TTCA--AATC---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1228  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1229  G-AACCAGC-C--TACTT------AGA----------TTCA---AA-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1230  A--ACCAGC-C--CACA--C----AGG--TTCA--AATC---TCTG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1231  -----------------------------AACT--TTTG---GA-C----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1232  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1233  G-AACCATC-T--CATCC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1234  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1235  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1236  A-AACCAAC-C--CAATCCA---------------AGTAAG---TT-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1237  G-AACCAGC-C--CACCC------AGA----------TTCA---AA-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1238  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1239  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1240  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1241  A--ACCAGC-C--CACC--C----AGA--TTTA--AGTT---TTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1242  A--ACCAGC-C--CACC--C----ATA--TCAA--AGTC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1243  A--ACCAGC-C--CACC--C----AGG--TTCA--AGTC---CCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1244  --------------------------------------------GG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1245  A-AACCAGC-C--CACCC------GAG----------TGTA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1246  --------------------------C--A-A----ATT---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1247  A--ACCAAC-C--CGCC--C----AGA--TTCA--AGTC---TC------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1248  A--ATCACT-A--CACC--C----AGG--TTTA--AGTT---TTAT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1249  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1250  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1251  G-AACCAGC-C--ACTAG------ATT----------TAAG---TC-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1252  A-ACCAACC-C--AC--------CAT----------GTTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1253  A--ATCAGT-T--CATC--C----AGG--TTCA--AGTT---TTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1254  A--ATCAGT-T--CATC--C----AGG--TTCA--AGTT---TTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1255  G-AACCAGC-C--CACCC------AGG----------TTCA----A-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1256  A--ACCGGC-C--AACC--C----AGG--TTCA--AGTC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1257  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1258  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1259  A--ACCAAC-C--CACC--C----AGG--TTCA--AGTC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1260  G-AACCAGC-C--CACCC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1261  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1262  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1263  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1264  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1265  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1266  G-AACCAGT-C--CATTC------AGG----------TTCA----A-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1267  G-AATCAGT-C--CACCC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1268  A--ACCAGC-C--CACC--C----AGG--TTCA--AGCC---CCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1269  -------------CATC--C----AGT--TTCA--A--G---TC-T----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1270  A--AACAAG-C--CACC--T----AGG--TTCA--AATC---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1271  A--ACCAGC-A--CATT--C----AGA--TTCA--AGTC---TC-C----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1272  A-AACCAGC-C--CATCC------GGT----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1273  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1274  A--ACCACC-C--CATC--C----AGT--TACA--AGTC---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1275  -----CAGC-C--CA------CTAAA----------GTTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1276  A--ACCAGC-C--CACC--C----AGG--TTCA--AGTC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1277  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1278  G-AACCAGC-C--CATCCAGGT----------------TTA---AA-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1279  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1280  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1281  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1282  --------G-T--CGGG--T----TCC--TCTG--GATT---CTGG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1283  G-AACCAGC-C--CACTC------AGG----------TTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1284  -------------GTGG--A----ATC--AGCC--AATC---CA-G----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1285  A--ACCAGG-C--CACC--T----ATG--TTCA--AGTC---TTTG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1286  G-AACCAGC-C--CTGCA------CCT----------AAGTTCAAG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1287  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1288  A--ACCCAC-C--CACC--C----AGG--TTCA--AGTC---CTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1289  G-AACCAGC-C--CACCC------AGG----------TTCA----A-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1290  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1291  G-AACCAGC-C--CACCC------AAG----------TTTA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1292  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1293  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1294  ------------------------GA----------ACTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1295  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1296  A--ACCAGC-C--CATC--C----AGG--TTCA--AGTC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1297  A--CCAACC-T--ACCC--A----AAA--TTCA--AGTT---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1298  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1299  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1300  --------C-T--CATT--C----AAG--TTCA--AGTC---CTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1301  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1302  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1303  G-AACCAGC-C--TACCC------A-------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1304  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1305  A--ATCAGC-C--CATC--C----AGA--TTCA--AGTC---TCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1306  G-AATCAGC-C--CACTC------AGG----------CTCA---TG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1307  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1308  A--CCAGCC-C--ATTT--T----TTT--TCTA--GAAT---ACGG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1309  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1310  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1311  -----------------------------------GGTA---AAAT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1312  A--ATTAGC-C--TATC--C----AGG--TTGA--CTT------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1313  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1314  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1315  G-AAGCAGC-A--TACCG------AG----------GTTCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1316  ------------------------------------TTT---ATGG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1317  G-AACCAGC-C--TACTC------ATG----------TTGA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1318  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1319  --------------------------G--TTCA--AGTC---CCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1320  G-AACCAGC-C--CATTC------AGG----------ATCA---AG-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1321  ----------------T--T----A-------A--AGTC---TCCA----

GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out0     ------AT-------TCAA-ATCTCA------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1     --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out2     --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out3     CCCA-G-A------CTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out4     ------AC-------TCGT-CATGAG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out5     ------AC-------TTGG-CATGGA------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out6     --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out7     TCTA-AAT-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out8     ------AT-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out9     CCTA-A--------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out10    ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out11    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out12    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out13    ------AC-------TT---------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out14    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out15    CCTC-GAT-------TTGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out16    TAC-----T--AGAATTGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out17    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out18    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out19    CTCA-GAT-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out20    ------AC-------TTGG-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out21    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out22    ---------------GACA-CGT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out23    ------AC-------TT---------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out24    ------AT-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out25    CCT--------AGACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out26    ------AC-------TTGA-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out27    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out28    --CC-ACC-------TTTA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out29    ------AC-------TTGG-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out30    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out31    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out32    -CC-----T--AGAATTGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out33    ------------GACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out34    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out35    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out36    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out37    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out38    CGT--------AAACTTCA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out39    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out40    ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out41    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out42    CTCA-G-A------TTTTA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out43    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out44    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out45    ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out46    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out47    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out48    ------AA-------CCAG-CCCACCC------AGGTTTAAG--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out49    ------AC-------TT---------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out50    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out51    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out52    -------------------AGC----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out53    ------AT-------TTGA-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out54    ------AT-------TTGA-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out55    ------AC-------TTGG-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out56    CCT--------AGACTTGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out57    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out58    ------AC-------TTGA-CGTGGGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out59    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out60    ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out61    -----GAT-------TTGA-CATGGA------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out62    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out63    CCTA-TGC-------TTGT-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out64    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out65    ------AC-------CTGA-CATTGGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out66    ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out67    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out68    ACCA-GACT-------TGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out69    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out70    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out71    ------AC-------TATG-CATGAA------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out72    CTCA-GACT-------TGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out73    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out74    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out75    ------AC-------TTGA-CGT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out76    CTTT-GACCT----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out77    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out78    CTTA-G--A--CGACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out79    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out80    ------AC-------TTGA-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out81    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out82    CCTA-AAC-------TTGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out83    CTTA-AAC-------TTGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out84    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out85    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out86    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out87    ------AT-------TTGG-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out88    ------AC-------TTAT-GGG---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out89    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out90    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out91    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out92    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out93    CACA-GAGT-------TGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out94    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out95    ------AC-------TTAA-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out96    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out97    ------AC-------TTGG-AATATA------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out98    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out99    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out100   CATT-GTT-------GCTC-A-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out101   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out102   ------AC-------TTGG-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out103   ------AT-------TT---------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out104   CATA-AAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out105   ------AC-------TTGA-CGT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out106   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out107   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out108   ------AT-------TTGA-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out109   ------AC-------CCAG-G-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out110   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out111   ------AT-------TTGA-AATTGGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out112   ------AC-------TTGG-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out113   CTCA-A-A------CTTGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out114   ------AC-------TTGG-CATAAG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out115   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out116   TTTG-AAT-------TTGA-T-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out117   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out118   CAAA-GAC-------TTGG-T-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out119   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out120   CAC--------AGACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out121   C-------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out122   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out123   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out124   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out125   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out126   ------TC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out127   ------AT-------TTGA-AA---A------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out128   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out129   -----------------------GGG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out130   CATG-TAC-------TTAA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out131   ------AC-------TTGG-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out132   ------AC-------TTGG-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out133   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out134   TTAC-TTG----------A-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out135   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out136   CTAC-TTG----------A-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out137   ------AC-------TTGG-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out138   ------AC-------TTGA-CGT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out139   ------AT-------TTGA-CGTGGG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out140   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out141   TCCA-GAC-------TTGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out142   ------AC-------TTGA-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out143   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out144   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out145   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out146   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out147   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out148   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out149   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out150   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out151   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out152   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out153   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out154   ------AC-------TTGA-CATGAGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out155   -----TAC-------TTGA-CATGAA------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out156   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out157   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out158   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out159   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out160   TCC-----C--AGACTTGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out161   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out162   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out163   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out164   ------AC-------TTGA-TGT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out165   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out166   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out167   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out168   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out169   ------AT-------TTGA-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out170   CATA-AAC-------TTGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out171   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out172   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out173   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out174   ------AC-------TTTA-CG----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out175   CCC--------ACACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out176   ------AC-------TTGGCGGTTGG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out177   ------TC-------TGGC-ATTGGG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out178   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out179   -----CAC-------TTAT-CATGTG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out180   ATTA-GAG-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out181   TCTT-ACT-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out182   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out183   CTCT-GAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out184   ------AC-------TTGA-CATGCG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out185   TCT--------AGACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out186   ------AC-------TTGA-CT----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out187   CTCA-GTC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out188   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out189   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out190   ------AC-------TTGA-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out191   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out192   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out193   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out194   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out195   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out196   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out197   CTCC-AAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out198   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out199   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out200   ------AT-------TTGG-CATGAGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out201   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out202   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out203   ------AC-------TTGG-CATTGGG-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out204   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out205   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out206   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out207   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out208   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out209   TCT-----T--AGACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out210   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out211   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out212   ------AC-------TTGG-CATGTG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out213   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out214   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out215   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out216   ------AC-------TT---------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out217   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out218   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out219   CGTA-GAG-------TTGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out220   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out221   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out222   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out223   TCC-----T--AGACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out224   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out225   ACT-----T--AGACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out226   -----AAT-------TTGA-CTCGGG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out227   TCTA-GAC-------TTAA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out228   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out229   ------GA-------CTTA-CATGGGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out230   ------AC-------TT---------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out231   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out232   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out233   ------AC-------TTGA-CATTTA------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out234   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out235   -----------------------GCG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out236   CCT--------AGACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out237   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out238   CCT--------A--------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out239   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out240   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out241   -----ACT-------TAGA-CATGGG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out242   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out243   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out244   ------CT-------AGCG-CGGGTGC-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out245   TCTA-AAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out246   TCAG-AAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out247   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out248   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out249   CCTA-GAC-------TTGA-T-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out250   ------GT-------TTGA-CATGGG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out251   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out252   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out253   ------AT-------TTAA-GTCTCC------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out254   ------AC-------TTGG-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out255   CTCC-AACT-------TGA-T-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out256   TTCA-T-C------CTTGC-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out257   ------TG-------GTAA-GTG---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out258   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out259   CCCA-GACT-------TGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out260   -----TGG-------ATTT-GACATG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out261   TCTA-GAC-------TTGG-TT----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out262   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out263   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out264   ------AC-------TTAA-CATGAGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out265   TCTA-GAT-------TTGG-A-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out266   ------AC-------TTGA-CATGGGC-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out267   CCTA-AAT-------TTGG-T-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out268   TCT--------ATACTTCA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out269   CTTT-GAC-------TTG--A-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out270   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out271   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out272   ------AC-------TTGT-CGT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out273   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out274   ------AC-------TTGA-TGTCGGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out275   CCTA-TAC-------TTAA-A-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out276   ------------------------G-------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out277   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out278   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out279   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out280   TCT--------AGACTTAA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out281   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out282   TTCC-GAT-------TTGA-T-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out283   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out284   CATA-AAT-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out285   ------AC-------TTGA-TA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out286   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out287   CCTA-GAT-------TTTC-AC----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out288   CCTA-TAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out289   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out290   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out291   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out292   CTTA-GAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out293   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out294   TCC-----T--AAACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out295   ------AC-------TTGG-CATGGG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out296   ------AC-------TTGA-CATACA------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out297   ------AC-------TTGG-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out298   TCCA-GACT-------TGC-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out299   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out300   CCGG-ACTTG----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out301   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out302   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out303   CCTA-GAC-------TTGG-T-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out304   CCTA-AAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out305   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out306   CCT--------ACACTTGA-T-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out307   --------------------------G-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out308   CCGA-AGA-------GCCC-T-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out309   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out310   CTGA-GAC-------TTGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out311   CCT--------AGACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out312   ----------------TGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out313   TCC-----T--ATGCTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out314   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out315   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out316   ------AT-------TTGA-CGT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out317   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out318   CCT--------AAACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out319   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out320   ------AC-------TTGA-TA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out321   TCT-----T--AGACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out322   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out323   CACA-GACT-------TGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out324   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out325   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out326   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out327   TTTA-TAT-------TTGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out328   ------AC-------TTGG-TATGGGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out329   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out330   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out331   CGTA-GAT-------TTGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out332   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out333   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out334   TCT-----T--AAACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out335   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out336   ------AC-------TTGG-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out337   ------AC-------TTGC-CGTTGA------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out338   CCT--------AGACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out339   ------AC-------TTGA-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out340   ---------------AAGT-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out341   CCTA-AAC-------TTGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out342   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out343   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out344   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out345   CCC--------AGACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out346   CATA-GAC-------TTG--T-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out347   ------AT-------TTGA-CG----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out348   ------AT-------TTGG-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out349   CTTA-GAT-------TTAA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out350   ------AC-------TTGA-GAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out351   ------AC-------TTGG-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out352   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out353   TCTA-GAT-------TTGT-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out354   TTCA-GAC-------TTGG-T-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out355   -CA-----T--AAACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out356   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out357   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out358   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out359   CCT--------AAACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out360   -----AA-------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out361   TCTA----------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out362   ------AC-------TTGG-TAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out363   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out364   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out365   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out366   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out367   CCTA-GCT-------TGAC-G-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out368   ---------------TCAA-GTCTTA------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out369   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out370   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out371   ---T-AAT-------TTGT-T-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out372   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out373   ------AT-------TTGA-CATGAG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out374   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out375   CCTA-AAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out376   CTTC-GATTG--------A-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out377   ------AT-------TTGG-TA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out378   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out379   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out380   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out381   -TATGAGT-------TGAA-TGTCCA------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out382   CCTA-AAC-------TGGT-T-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out383   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out384   TACA-GAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out385   C-------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out386   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out387   TAC-----T--AGACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out388   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out389   CCTA-GAC-------ATGT-CAC---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out390   ------AA-------TCAG-TCCACCC------AAGTTGAAG--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out391   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out392   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out393   ------AC-------TTGA-TGTGGG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out394   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out395   ------AT-------TTGA-CG----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out396   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out397   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out398   ------AC-------TTGA-------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out399   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out400   CCTA-CAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out401   -----GAC-------TTGG-CATAGG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out402   ------AC-------TTGA-CG----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out403   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out404   ------AC-------TTGA-CGT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out405   TCTA-GAC-------ATGA-T-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out406   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out407   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out408   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out409   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out410   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out411   ------TT-------TCAG-AATTTA------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out412   CGTT-TTC---TGGATTTA-T-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out413   AATA-GAC-------TTGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out414   ----------------------C---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out415   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out416   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out417   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out418   ------AC-------TTGG-CAC---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out419   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out420   -------A-------CTTG-CATGGGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out421   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out422   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out423   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out424   ------AT-------TTGA-CGT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out425   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out426   ACTA-AAT-------TT---------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out427   ------AC-------TT---------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out428   ------AT-------TTGA-CGT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out429   CTCC-GAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out430   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out431   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out432   -GAGGCGT-------TTGT-GATGAG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out433   ------AT-------TTTA-GGTGGG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out434   CGCA-GAT-------TTG--A-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out435   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out436   CCTA-GTC-------TTGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out437   TCTA-AAC-------TTTG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out438   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out439   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out440   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out441   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out442   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out443   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out444   ------GT-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out445   TGCA-GACT-------TGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out446   ------AC-------TTGG-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out447   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out448   ------AC-------TTGA-C--GGGA-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out449   ------AC-------TTGA-CATGAGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out450   ------AC-------TTGA-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out451   ------AC-------TTGG-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out452   ------AC-------TTGA-TATGGG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out453   ------AC-------TAT--------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out454   ------AC-------CT---------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out455   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out456   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out457   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out458   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out459   CTCA-GATT-----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out460   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out461   ------AT-------TTAA-TATGGGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out462   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out463   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out464   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out465   CTTCTGAC-------TTGG-T-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out466   ------GA-------CTGA-CGT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out467   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out468   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out469   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out470   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out471   CTCC-GAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out472   ------AC-------TTGA-TAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out473   ---------------GTCA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out474   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out475   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out476   CCTA-GGC-------TTA--A-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out477   TCCA-GAC-------TTAG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out478   CTT--------AGACTTAA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out479   A-------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out480   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out481   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out482   C-------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out483   CCTA-GGC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out484   CTTA-GAC-------TTGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out485   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out486   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out487   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out488   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out489   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out490   ------AC-------TTGA-TAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out491   ------AA-------CCAA-TCCACAT------AGGTTCAAGTT--TTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out492   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out493   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out494   ------AC-------TTGA-CATCGGC-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out495   ------AC-------TT---------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out496   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out497   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out498   CTTA-AAA-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out499   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out500   TTCA-AAT-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out501   -----GAC-------TTGA-CATAGG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out502   TCA-----T--AG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out503   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out504   CTTC-G-A------CTTTG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out505   TCC-----T--AAACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out506   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out507   ------AC-------TT---------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out508   ------AC-------TTGA-CACGGG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out509   ----------------TTA-GCATGG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out510   ------AC-------TTGA-CA---T------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out511   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out512   CCT--------AAACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out513   ------AC-------TTGG-TGA---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out514   CATA-TAC-------TTGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out515   ------AC-------TTGA-CGT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out516   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out517   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out518   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out519   ------AC--------TTG-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out520   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out521   CCT-----A--AATATTGC-A-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out522   ------AC-------TTGG-CATGGCT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out523   ------CT-------TGAC-AT---G------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out524   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out525   TCC-----T--AGATTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out526   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out527   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out528   ------AG-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out529   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out530   TCCA-GACT-------TGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out531   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out532   TATA-AAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out533   ACT-----------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out534   ------AC-------TTGG-TATGGAT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out535   ------AA-------GTAC-TAGACT------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out536   TTTA-GAC-------TTGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out537   CTCC-GACT-------TGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out538   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out539   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out540   CCTA-TAC-------TTGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out541   ------AT-------TTGC-CATGTG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out542   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out543   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out544   ------AC-------TTGG-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out545   CTCA-GAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out546   ------AT-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out547   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out548   CTCC-GACT-------TGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out549   ------AT-------TTGG-TT----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out550   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out551   ------CA-------GGTG-TATGGG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out552   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out553   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out554   -------C-------TTGA-CATGGAT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out555   -------C-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out556   TCTA-AAC-------TTGA-T-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out557   ------AC-------TTGA-CGT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out558   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out559   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out560   CTTA-GAC-------TTGT-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out561   ------AC-------TTGA-CGT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out562   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out563   -----GAC-------TTGA-CGTGGA------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out564   ------AA-------GCTT-GATGTG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out565   ------TT-------GACA-TATGGGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out566   ------AC-------TTGA-AAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out567   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out568   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out569   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out570   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out571   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out572   CCT--------AAATTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out573   ------AT-------TTGG-CATGGGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out574   CCTA-AGT-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out575   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out576   CTCA-GGC-------TTGT-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out577   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out578   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out579   TCT--------AAACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out580   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out581   CTCC-GAC-------TTGA-T-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out582   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out583   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out584   TCC-----T--AAACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out585   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out586   ------AT-------TTAG-CTTTGC------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out587   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out588   ------GG-------ATCA-GATGGGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out589   TGTG-GTG-------GATC-A-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out590   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out591   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out592   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out593   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out594   TATA-GAA-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out595   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out596   ------AC-------TTGA-CATGGGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out597   ------AC-------TTGA-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out598   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out599   ------AC-------TTGA-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out600   ------GG-------TTCC-TTGTGGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out601   ------AT-------TT---------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out602   ------AC-------TAGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out603   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out604   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out605   ------AC-------TTGG-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out606   ------AC-------TTGG-CATCGGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out607   ------AC-------TTGA-CTT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out608   ------GC-------TTGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out609   ATG---------GA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out610   -------------------------CA-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out611   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out612   CCTA-GAT-------TTGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out613   ------AA-------TCAG-GCCACTC------AGGTTCAAG--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out614   TCC-----T--AGACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out615   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out616   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out617   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out618   ------AC-------TTAA-CATGGG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out619   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out620   ------GC-------TTGA-CAG---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out621   ------AC-------TTGA-CATGGGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out622   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out623   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out624   TT---------------GA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out625   ------AA-------CTTG-ACGTGAC-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out626   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out627   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out628   ------AT-------TTGA-TATGGGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out629   GCTC-AAG-------TCCT-A-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out630   TTC--------AGACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out631   TTCA-G-A------CTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out632   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out633   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out634   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out635   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out636   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out637   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out638   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out639   -----GAC-------TTGA-AACCCG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out640   TCC-----T--AAATTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out641   ------AT-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out642   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out643   CATA-AAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out644   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out645   ------TC-------AAGT-CCCTGAC-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out646   ------AA-------CCAG-CCCATCC------AGGTTCAAG--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out647   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out648   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out649   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out650   TATA-GAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out651   CCT--------ATACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out652   ------AC-------TTGG-ACAT--------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out653   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out654   CCCA-GAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out655   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out656   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out657   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out658   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out659   CCT--------CTAGACTT-G-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out660   CTCC-G-A------TTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out661   AGAT-TAC-------TTCA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out662   ATGA-GAC-------ATGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out663   ------AC-------TTGG-CATCACT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out664   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out665   ------GC-------TTAC-AATGGA------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out666   ------TC-------AGAA-CGT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out667   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out668   ------TC-------TTGA-AACCAG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out669   CTCA-CAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out670   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out671   ------AT-------TTGG-CATGGGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out672   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out673   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out674   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out675   ---------------GTAC-T-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out676   CCTA-TAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out677   ------AA-------GTAG-CCCACTC------AGGTTCGAG--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out678   CCT--------AGACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out679   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out680   CCTT-GAC-------CTGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out681   CGCA-GACT-------TGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out682   ------AC-------TTGA-TAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out683   ---A-GAC-------TC---------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out684   TTTA-GAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out685   CTTA-AAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out686   ------AC-------TTTG-CATGGGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out687   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out688   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out689   ------------------T-T-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out690   TCTA-AAC-------TTGG-T-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out691   ------AT-------TTGG-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out692   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out693   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out694   TCCA-GACT-------TGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out695   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out696   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out697   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out698   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out699   ------AC-------TTGG-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out700   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out701   ------AC-------TTGA-CATGG-------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out702   ------CC-------TTGG-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out703   ------GT-------TTGA-CATGGA------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out704   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out705   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out706   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out707   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out708   ------AC-------TTGA-CGT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out709   ------AT-------TTGA-TAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out710   TCT-----T--AGACTTCG-A-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out711   CCCA-GACT-------TGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out712   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out713   ------AT-------TTGA-CGTGGGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out714   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out715   CTC--------AGACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out716   ------AC-------CGGC-CCACCTA------GG-TTCAAG--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out717   CCTA-GTC-------TTGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out718   TC------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out719   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out720   CTCA-CACT-------TGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out721   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out722   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out723   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out724   CCT--------AAACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out725   ------AC-------TTGA-CG----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out726   ------GA-------CTTG-GTA---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out727   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out728   CTCC-AGCT-------TAA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out729   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out730   ------AC-------TTGG-CATGGGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out731   ---------------CCAG-ACT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out732   ------AC-------TCGG-CATTGA------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out733   CTAC-ATG-------AGTG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out734   ------AC-------TTGA-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out735   CCT--------AGACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out736   ------GC-------TTGA-TGTGGG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out737   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out738   TCCA-GAC-------TTAC-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out739   CCTG-TAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out740   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out741   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out742   CATA-GAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out743   ------AC-------TTGA-CATGGGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out744   ------TT-------TT---------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out745   ------AC-------TTCG-CATGGGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out746   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out747   TCC-----T--AGACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out748   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out749   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out750   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out751   ------AC-------TTAA-CATGCAT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out752   ------AT-------TTGA-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out753   CCTA-AAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out754   TCTA-AAC-------TTGA-T-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out755   TCCA-GACT-------TGG-T-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out756   ------AC-------TTGA-CGT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out757   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out758   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out759   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out760   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out761   CTTA-GGC-------TTGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out762   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out763   CTCC-GAC-------TTAA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out764   ------GT-------TGCA-TTTACTT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out765   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out766   ------AC-------TTGA-CATATGG-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out767   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out768   ------AC-------TTGG-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out769   CTT--------AAACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out770   ------AC-------TTGA-CGT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out771   ------GT-------TCGA-CATTGGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out772   CTTA-GACT-------TGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out773   TC------T--AGATTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out774   CCTG-AAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out775   CTAG-ACTTGACAAGTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out776   ------AC-------TTGA-TG----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out777   ------AG-------GCTT-GATGTG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out778   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out779   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out780   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out781   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out782   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out783   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out784   ------TT-------TTCA-GTGA--------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out785   CGTA-CAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out786   ------AT-------TT---------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out787   ------AC-------TTGA-CATGTGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out788   CCTA-TAT-------TTGG-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out789   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out790   ------AC-------TT---------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out791   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out792   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out793   ------AC-------TTAA-CG----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out794   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out795   ------AG-------TTGA-CACATGTGCTCACATTTTCTAGATTATTTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out796   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out797   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out798   ------AC-------TTGG-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out799   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out800   ------AC-------TTGA-TAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out801   ------AT-------TTGG-CATGGT------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out802   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out803   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out804   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out805   ------AC-------TTGA-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out806   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out807   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out808   ------AC-------TT---------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out809   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out810   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out811   -----TAG-------ATTT-GAAATG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out812   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out813   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out814   ------GG-------CTTG-TATGTG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out815   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out816   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out817   CCTA-G-A------TTTGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out818   -----TAG-------ACTT-AACATT------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out819   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out820   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out821   --------------------------------------GTGA--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out822   ------AC-------ATGA-CAA---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out823   ------AC-------TTGA-CG----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out824   ------AG-------TTGG-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out825   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out826   CCTA-AAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out827   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out828   ------AT-------TTGG-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out829   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out830   ------AC-------TTGA-TATGGGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out831   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out832   TCT-----T--AAA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out833   ------AC-------TTGG-TGTGGGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out834   TCC-----C--AGACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out835   ------TC-------CATC-AATAT-T-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out836   CTTA-GAC-------TTGG-G-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out837   ------CT-------TGAC-ATGGTTG-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out838   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out839   ------AC-------TT---------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out840   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out841   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out842   ------AC-------TTGA-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out843   TTTA-GAT-------ATTG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out844   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out845   TCTA-GAT-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out846   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out847   TTT-----T--AAATTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out848   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out849   ------AA-------TTGA-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out850   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out851   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out852   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out853   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out854   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out855   CTCC-GACT-------TGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out856   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out857   TCT--------AGACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out858   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out859   AGTT-CAA-------GTTC-T-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out860   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out861   CTCC-G-A------TTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out862   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out863   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out864   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out865   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out866   CTCC-GAT-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out867   CTAA-ATT-------TGGT-A-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out868   TTCT-GAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out869   ------TA-------GTGG-AATCAG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out870   CCAG-ACT--------TGC-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out871   ------AC-------TTGA-GAC---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out872   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out873   GACG-TGGG-------TAC-T-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out874   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out875   ------AC-------TTGG-TAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out876   ------AC-------TTGG-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out877   ------AC-------TTGA-CG----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out878   CTCA-GACT-------TGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out879   ------AA-------TTGC-CATGTG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out880   CTTA-GAC-------TTGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out881   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out882   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out883   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out884   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out885   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out886   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out887   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out888   TCT--------AAACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out889   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out890   GTGG-AAT-------CAGT-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out891   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out892   CTCC-GAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out893   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out894   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out895   CTGA-GAC-------TTG--A-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out896   TCTC-GAC-------A----G-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out897   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out898   ------GC-------TTGG-CGCATGG-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out899   CATG-TAC-------TTGA-T-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out900   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out901   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out902   CCTA-GAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out903   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out904   ------AG-------G----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out905   GGTA-GAC-------TTGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out906   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out907   CCTA-AAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out908   ------AT-------TTGG-CATGGG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out909   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out910   TTAT-TAC-------AGGA-------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out911   ------GC-------TTGG-CATGGA------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out912   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out913   CCTA-GGA-------TTAG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out914   ------AC-------TTAA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out915   ------AT-------GACA-TGGGTGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out916   ------GA-------TTGA-CGT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out917   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out918   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out919   ------TT-------TTAG-CATGGG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out920   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out921   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out922   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out923   CCT--------AAACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out924   CTCG-ACT--------TGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out925   ------AC-------TTGA-CATGGGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out926   CC------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out927   ------AC-------TTGA-TG----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out928   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out929   CCTA-GAC-------TTGG-CTA---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out930   ------AC-------TTGG-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out931   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out932   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out933   ------AC-------TTAG-TA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out934   ------AT-------TTGA-GAC---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out935   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out936   -----CAA-------ACTT-AGCATG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out937   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out938   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out939   ------AA-------GTTC-TAACTTG-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out940   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out941   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out942   ------AC-------TTGA-CGT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out943   ------------------C-TAGCTCA-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out944   CTCC-AAT-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out945   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out946   CCT--------AAATTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out947   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out948   CTCA-GACT-------TGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out949   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out950   ------TG-------AC---------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out951   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out952   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out953   ------AC-------TC---------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out954   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out955   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out956   CTCT-GACC-------TGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out957   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out958   TCTC-GAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out959   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out960   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out961   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out962   ------TT-------TCAA-GTTAGG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out963   ------AC-------TTGG-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out964   -------------------------GT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out965   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out966   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out967   TCC--------AAACTTGA-T-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out968   TCAA-GTC-------CTAG-A-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out969   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out970   CCT--------AGACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out971   ------AC-------TTGA-CATGGGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out972   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out973   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out974   ------AC-------TT---------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out975   TC------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out976   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out977   ------AT-------TTAA-CATGGA------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out978   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out979   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out980   ------AC-------TTGG-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out981   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out982   CATA-AAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out983   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out984   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out985   TCTA-TTCT--AGAATTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out986   ------AC-------TTGA-CG----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out987   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out988   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out989   -----------------------TGGA-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out990   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out991   ------AT-------G----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out992   TCTA-GAC-------GTGC-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out993   ------AT-------TTGA-CGT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out994   ------AT-------TTAA-CG----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out995   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out996   ------AT-------TTGA-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out997   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out998   ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out999   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1000  ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1001  -----GAC-------CCTT-GACATC------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1002  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1003  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1004  CTCA-GAT-------ATGT-T-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1005  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1006  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1007  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1008  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1009  ------AC-------TTGG-CATACA------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1010  ------AC-------CTGA-CG----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1011  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1012  --------------------------T-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1013  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1014  ------AC-------TTAG-CATTGA------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1015  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1016  CCCA-GACT-------TCA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1017  TCTA-TAA-------TCGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1018  TATA-CAC-------TTGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1019  ------AC-------TTGA-CATGGGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1020  ------TT-------GCGA-TGGAAAC-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1021  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1022  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1023  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1024  AAGA-CTT-------AACA-T-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1025  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1026  TCA-----T--AAATTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1027  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1028  CCCAGACT-------TTGA-CGTGTGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1029  CCTA-AAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1030  ------------------------GGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1031  ------AC-------TTGG-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1032  ------AC-------TTGG-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1033  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1034  ------AC-------TT---------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1035  ------AC-------TTGA-CGT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1036  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1037  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1038  ------AT-------TTGA-CGT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1039  CCCA-GAC-------TTGG-T-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1040  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1041  CGTA-AAC-------TGG--A-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1042  ------TT--------TAG-CTCAAGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1043  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1044  ------AC-------TTGA-CGT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1045  ------AC-------TTGA-AAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1046  TCT--------AAACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1047  CAAA-TTTG-------GCA-T-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1048  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1049  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1050  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1051  ---------------------ATGGG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1052  C-------T--ATACATGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1053  ACTA-GAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1054  CATA-CAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1055  CCAT-CGC-------ATGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1056  ------------------G-CTC-AGG------TAGTCTGGT--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1057  CTCA-CAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1058  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1059  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1060  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1061  ------AC-------TTGA-TGTGGAT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1062  ---C-AAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1063  -------C-------TTGG-CATGGA------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1064  ------AC-------TTGA-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1065  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1066  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1067  ---A-GAC-------TTG--A-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1068  CGT--------AGACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1069  ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1070  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1071  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1072  ------AC-------TT---------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1073  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1074  ------AG-------TT---------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1075  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1076  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1077  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1078  ------AC-------TTGA-CG----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1079  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1080  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1081  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1082  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1083  ------CT-------TGAC-ATG---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1084  TTTA-GAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1085  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1086  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1087  GTTAGAAC-------TTGA-CGTGGC------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1088  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1089  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1090  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1091  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1092  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1093  --------------------CATTGG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1094  TCTA-GAC-------TTG--A-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1095  ------GG-------TTTA-AACGGGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1096  -----TGG-------TTCG-TTCTGG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1097  CCTA-CAC-------TTCT-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1098  ------AC-------TTGA-CG----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1099  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1100  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1101  ------AC-------TTGA-CG----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1102  ------GC-------AAGA-TATGGGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1103  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1104  CCTA-GAT-------TTG--A-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1105  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1106  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1107  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1108  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1109  ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1110  TCC-----C--AGACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1111  ------AT-------TTGA-TGT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1112  CTCC-GACT-------TGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1113  ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1114  ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1115  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1116  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1117  ACT-----A--GACTTAAA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1118  ------AC-------TT---------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1119  ------AC-------TTGG-CATGGGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1120  ------AC-------TTGA-CGT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1121  CTCC-G-A------TTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1122  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1123  ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1124  ------AC-------TTGA-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1125  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1126  ------AT-------TTGA-TGT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1127  ----------------TGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1128  CTCC-GAA------CTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1129  ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1130  TCTT-AGA-------TTAT-T-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1131  TCT-----C--AGATTTAA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1132  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1133  CTTA-AAT-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1134  CCT--------AGACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1135  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1136  ------AT-------TTGG-CATGGGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1137  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1138  ------AC-------TTGA-TG----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1139  CTTA-AAT-------TTGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1140  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1141  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1142  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1143  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1144  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1145  CCTA-GAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1146  ------AC-------TTGA-CG----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1147  ------AT-------TTGA-TAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1148  ------AC-------TTGA-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1149  ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1150  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1151  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1152  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1153  CCTA-GAC-------TTTA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1154  ------CC-------TAGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1155  -TTA-AAC-------TTAG-G-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1156  CCT-----------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1157  GGCA-TGG-------ATGC-T-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1158  CCCA-GAC-------TTAC-T-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1159  ------GA-------CTTG-ACATGAT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1160  TGCT-CG-------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1161  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1162  ATCA-GGC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1163  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1164  ------AC-------TTGG-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1165  ------TC-------TTCA-CATGGGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1166  ------AC-------TTGA-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1167  CTTA-CAT-------TTCA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1168  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1169  ATTT-AAT-------TAAC-T-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1170  TCAA-GACT-------TGG-T-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1171  CACA-GAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1172  ------TT-------GAAC-CTGGGTG-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1173  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1174  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1175  CC------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1176  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1177  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1178  ------AC-------TTGG-TAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1179  CACA-GAC-------TTAG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1180  ------CA-------TGGT-CCTGTGC-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1181  CTTG-TAC-------TACT-T-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1182  ------AG-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1183  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1184  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1185  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1186  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1187  ------CT-------TGG-------C------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1188  ---------------GTGA-AATGA-------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1189  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1190  TTC-----T--AGACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1191  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1192  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1193  CTCC-GACT-------TGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1194  ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1195  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1196  --------------------------G-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1197  ACCA-GAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1198  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1199  ------AC-------TA---------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1200  CTTA-TAC-------GTTG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1201  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1202  CCGA-GAC-------TTGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1203  GTTA-GAC-------TTGA-T-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1204  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1205  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1206  TTTA-GAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1207  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1208  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1209  ACTA-GGC-------CTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1210  ------AC-------TTGG-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1211  TTTA-GAT-------TTGA-T-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1212  ------CC-------TTGA-CGC---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1213  ------AC-------TTGA-CG----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1214  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1215  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1216  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1217  ACT-----A--GAGCTTGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1218  ----------------CAA-T-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1219  TCAG-ACTT--------GG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1220  CTA--------AGACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1221  ------AC-------TT---------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1222  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1223  ------AG-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1224  ------AC-------TTGA-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1225  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1226  ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1227  ------AC-------CTGA-CATGGG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1228  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1229  CCTA-AACT-------TGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1230  ------AC-------GTGG-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1231  -----TTT-------TGGT-CATTGG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1232  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1233  TTTT-T----------AGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1234  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1235  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1236  AAGT----------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1237  CCT--------AGACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1238  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1239  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1240  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1241  ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1242  ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1243  ------AC-------TTGA-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1244  ------AA-------TCAA-CCCACAC------AGGTTCAAG--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1245  CATA-AAA-------CTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1246  ------AC-------TTAA-CATGCG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1247  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1248  ------AC-------TTGA-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1249  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1250  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1251  CCGA-C---------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1252  CCTA-CAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1253  ------AC-------TTGA-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1254  ------AC-------TTGA-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1255  CCC-----T--AAACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1256  ------AC-------TTGA-TAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1257  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1258  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1259  ------AC-------TTGG-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1260  CCCA-GAC-------TTGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1261  -----------------------------------GTGAACC--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1262  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1263  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1264  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1265  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1266  TCC-----T--AAACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1267  CCT--------AAACTGGG-T-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1268  ------AC-------TTGG-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1269  -----CCG-------ACTC-GATGAA------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1270  ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1271  ------GA-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1272  TTTC-ATGG-----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1273  ------------------------TG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1274  ------AC-------TTGA-CATACA------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1275  ACTA-GAC-------TTGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1276  ------AC-------TTGA-TAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1277  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1278  TCCA-GAT-------TTGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1279  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1280  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1281  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1282  ------TA-------GAAC-CAGCCCA-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1283  TCTA-AAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1284  -----ATT-------TAAA-TTCTAA------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1285  ------AT-------TTGA-CA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1286  CTCT-GACT-------AGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1287  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1288  ------AC-------TT---------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1289  TCT-----T--AAACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1290  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1291  CCT--------AGACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1292  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1293  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1294  CTCA-GAA-------TTGG-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1295  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1296  ------AC-------TT---------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1297  ------AC-------TT---------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1298  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1299  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1300  ------AT-------TTGA-CATGTGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1301  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1302  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1303  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1304  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1305  ------AC-------TTGA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1306  CCT--------AGACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1307  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1308  ------AA-------CCAG-CCCATAC------AGGTTTAAG--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1309  ----------------TGA-GAGGAG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1310  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1311  ------AC-------CTAC-CAACAA------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1312  -----------------GA-CAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1313  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1314  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1315  TCTA-AAC-------TTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1316  ------AA-------CCAA-CCCACTC------AGATTCAAA--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1317  GAT--------AAAATTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1318  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1319  ------AC-------TTGG-CATGGGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1320  CCT--------AGACTTGA-C-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1321  ------AT-------TTGA-CATGGAT-----------------------

GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out0     -------------------------------------GAC-TTA-GCA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1     --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out2     --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out3     --------------------ATGGGTGCT--TG----CAT-TTT-C-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out4     -------------------------TGCT--CA----TAT-TTA------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out5     -------------------------T------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out6     --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out7     --------------------ATGGGTGTT--C-AT--ATT-TAC--CT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out8     ----------------------GGGTGTT--CG----CAT-TTC-CTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out9     -------------------------AGTG--TC----ACA-TTT-TTC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out10    ----------------------TGGTGCT--CG----CAT-TTC-AAT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out11    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out12    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out13    -----------------GACGTATGGGTG--TC----ACA-TTC------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out14    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out15    --------------------ATAGATGCT--CA----CAT-TTA-C-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out16    --------------------ATGGGTGTC--AT----ATT-TCA---C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out17    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out18    --------------------------------------AT-TTA-TTC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out19    --------------------ATGGACGGT--CG----CAT-TTC-T-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out20    ----------------------GGGTGCT--CG----CAT-TTT-CTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out21    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out22    ----------------------GGGT-GT--CA----CAT-TTT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out23    -----------------GACATATGGGTG--TC----ACA-TTT-TTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out24    ----------------------GTGT-GT--CA----CAT-TTC-CGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out25    --------------------ATGTGTG----AC----ACA-TTT-CT---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out26    ---------------------TGAGTGTT--CG----CAT-TTC-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out27    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out28    --------------------GTGGGTGCT--CA----CAT-TTA-C-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out29    ---------------------TGGG-TGT--TC----GCA-TTT-ACT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out30    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out31    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out32    --------------------ATTGGTGTC--AC----ATT-TCC---C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out33    --------------------GTGGGTGTC--AT----ATT-TTT---C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out34    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out35    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out36    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out37    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out38    --------------------ATACGTGT----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out39    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out40    ------------------------GGGCG--TC----ACA-TTT-CTC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out41    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out42    --------------------ATGGGTGCT--CG----CAT-TTT-T-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out43    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out44    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out45    ----------------------ATGGGTG--TC----ACA-TTT-CTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out46    -------------------------------TC----GCA-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out47    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out48    TCCTAAACTTAACATCATGACATGTGTGC--TC----ACA-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out49    -----------------GACATGGGTGTC--AC-----AT-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out50    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out51    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out52    -------------------------TGAG--TT----TAG-TTC-AA---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out53    ---------------------TGGCTGCT--CG----CAT-TTT-TTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out54    ---------------------TGGGTGTT--CG----CAT-TTC-GCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out55    ---------------------TGGG-CGC--TC----GCA-TTT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out56    --------------------ATGGATACT--CA----TAT-TAC---C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out57    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out58    ------------------GCTCGGCTGCT--CA-----CG-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out59    ---------------------------------------------CCC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out60    ----------------------GGGT-GT--CA----CAT-TTC-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out61    -------------------------TGCT--CG----CAT-TTT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out62    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out63    --------------------ATACGTGGT--C----GCAT-TAT--CA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out64    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out65    ---------------------------GT--CA-----CA-TCT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out66    ----------------------GGGTGCT--CG----CAT-TTT--CT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out67    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out68    --------------------ATGGGTGAT--CG----CAT-TTC-T-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out69    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out70    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out71    -------------------------TGAT--TA----TAT-TTG-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out72    --------------------ATG---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out73    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out74    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out75    ----------------------GGGTGCT--CA----CAT-TTA-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out76    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out77    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out78    --------------------ATGGGTGTC--AT----ATT-TTC---C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out79    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out80    ---------------------TGGGTGCT--CG----CAT-TTC-CCA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out81    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out82    --------------------ATGGTTACT--C-GC--ATT-TAC--CT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out83    --------------------ATGGATGTC--AC-----AT-TTT-T-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out84    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out85    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out86    --------------------------GTG--AC----GCA-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out87    ----------------------GGGTGCT--CG----CAT-TTT-CTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out88    -------------------------TGCT--TG----CATTTTC-TTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out89    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out90    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out91    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out92    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out93    --------------------ACGTGTGCT--CG----CAT-TCG-C-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out94    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out95    ---------------------TGGGTGAT--GG----CAT-TTT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out96    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out97    -------------------------TGTT--CG----CAA-TTA-TGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out98    -------------------------------------CCA-CGT--CA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out99    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out100   --------------------CATTTTTCT--GG----A---TTT-A-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out101   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out102   ----------------------GGGTGCT--CG----CAT--TT-ATT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out103   -----------------GACATGGGTGTC--AT----ATA-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out104   --------------------GTGGGTGTC--AC-----AT-TTT-C-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out105   ----------------------GGGT-GT--CA----CAT-TTC-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out106   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out107   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out108   ---------------------TGGGTTCT--CA----CAT-TTA-CTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out109   --------------------TTCAAGTTT--CG----CAT-TTT-C-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out110   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out111   --------------------------GTT--CG----CAT-TTT-ACT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out112   ---------------------TGTG-TGC--TC----GTA-TTT-TTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out113   --------------------ATGGGTGCT--CG----CAT-TTC-C-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out114   -------------------------TGTT--CA----TGT-TTT-ACT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out115   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out116   --------------------ATG-GTGCT--CA----CAT-TTA-C-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out117   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out118   --------------------ATGGGTGCT--CG----CAT-TTC-T-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out119   ----------------------GGAT-GT--CA----CAT-TTT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out120   --------------------GAGGGTG----TC----ACA-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out121   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out122   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out123   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out124   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out125   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out126   ----------------------GGGT-GT--CA----CAT-TTC-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out127   ---------------------TGGGTGCT--CA----CGT-TTA-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out128   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out129   -------------------------TGCT--CG----CAT-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out130   --------------------ATGGGTTTC--A-CATTTTT-TTT--GG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out131   ----------------------TGGATGT--GG----CAT-TTA-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out132   ---------------------TGGG-TGC--TC----GCA-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out133   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out134   --------------------ATGGGTTTT--TG----CAT-TTT-T-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out135   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out136   --------------------ATGGGTTCT--TG----CAT-TTT-C-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out137   ----------------------GGGTGCT--CG----CAT-TTT--TT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out138   ------------------------GGGTG--TC----ACA-TTT-CCC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out139   -------------------------T-AT--TC----GCA-TTT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out140   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out141   --------------------AATATTAGT--GCTCACATT-TCC--CT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out142   ---------------------TGAG-CGC--TT----GCA-TTT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out143   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out144   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out145   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out146   ----------------------GGGTGCT--CA----CAT-TTT-CTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out147   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out148   ----------------------GGGT-GT--CA----CAT-TTT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out149   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out150   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out151   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out152   ----------------------GGGTACT--CG----CAT-TTT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out153   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out154   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out155   -------------------------TGTC--AT----GTT-TT--TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out156   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out157   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out158   ----------------------GGGTGCT--CG----CAT-TTT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out159   ----------------------GGGTGCT--CG----CAT-TTC-TTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out160   --------------------GTAGGTGTC--AC-----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out161   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out162   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out163   ----------------------GGGT-GT--CA----CAT-TTC-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out164   ----------------------GGGT-GT--CA----GAT-TTC-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out165   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out166   ------------------------AAGTG--TC----ACA-TTT-TCC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out167   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out168   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out169   ---------------------TGGGTGCT--TG----CAT-TTC-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out170   --------------------ATGAGTGGT--CG----CAT-TTT-C-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out171   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out172   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out173   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out174   ---------------------TGGGTGAT--CA----CAT-TTA-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out175   --------------------ATTTATGCT--CA----CAT-TTT---C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out176   -------------------------T-GT--CC----ATA-TTT-CTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out177   -------------------------TGCT--TA----TAT-TTA-CTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out178   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out179   -------------------------TGTT--CG----CAT-TTA-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out180   --------------------ATGGGTGTC--A-----CAT-TTA--CC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out181   --------------------ATGGGCATT--C-----ATT-GAT--CT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out182   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out183   --------------------ATGGGTGAT--CG----CAT-TTC-C-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out184   -------------------------TGAT--CG----CAT-TTC-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out185   --------------------ATGAGTG----TT----ACA-TTT-TCC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out186   -------------------------------CA----CAT-TTA-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out187   --------------------GTGAGTGTC--A-----CAT-TTC--CC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out188   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out189   ----------------------GGGT-GT--CA----CAT-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out190   ---------------------TGGGTGCT--CA----CAT-TTC-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out191   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out192   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out193   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out194   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out195   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out196   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out197   --------------------ATTGGTACT--TGC---ATT-TCT--CT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out198   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out199   ----------------------ATGGGTG--TC----ATA-TTT-TCC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out200   --------------------------TCT--TG----CAT-TTC-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out201   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out202   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out203   -------------------------TGTT--GA----AAT-TTA-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out204   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out205   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out206   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out207   ----------------------GGGT-GT--CA----CAT-TTC-CTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out208   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out209   --------------------ATGGGTACT--CA----CAT-TTC---C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out210   ----------------------GGGT-GT--CA----CAT-TTC-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out211   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out212   -------------------------T----------------GG------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out213   ----------------------GGGT-GT--CG----CAT-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out214   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out215   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out216   -----------------GACATGGGTGTC--AC-----AT-TTT-ATT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out217   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out218   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out219   --------------------TTGAGTAAT--TA----TAT-TTT-T-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out220   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out221   ----------------------GGGT-GT--TA----CAT-TTT-CTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out222   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out223   --------------------ATGGGTGTC--AC----ATT-TCC---C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out224   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out225   --------------------ATGGATGTC--AT----ATT-TCA---T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out226   -------------------------CGAT--CA----CAT-TTG-ACT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out227   --------------------ATTGATGCT--CG----CAT-TTT-T-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out228   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out229   ---------------------------GT--CA-----AA-TTT-TCA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out230   -----------------GGCCTGGATGCT--CA-----CA-TTT-CGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out231   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out232   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out233   -------------------------CATT--T-----------G-TTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out234   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out235   -------------------------TGTG--TG----CA-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out236   --------------------GTGGGGC----TC----ACA-TTT-ACC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out237   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out238   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out239   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out240   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out241   -------------------------TGCT--CG----CAT-TTC-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out242   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out243   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out244   ---------------------------TC--AC-----AT-TTA-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out245   --------------------ATGGGTGCT--C----ACAT-TTT--TT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out246   --------------------ATGAGTGCT--C-----ACA-TTT--TT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out247   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out248   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out249   --------------------ATGGGACTC--CC----G-A-CTT-T-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out250   -------------------------T-GT--CA----TAT-TTA-ACT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out251   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out252   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out253   -------------------------GATT--TG----ATA-TTT-TTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out254   ---------------------TGGA-TGC--TC----GCA-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out255   --------------------GTGGGTGCT--CG----CAT-TTC-T-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out256   --------------------ATGGGTG-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out257   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out258   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out259   --------------------ATGGG-------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out260   -------------------------GGTG--TC----ACA-TTT-TCC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out261   ----------------------TGATGCT--CA----CAT-TAC-C-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out262   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out263   ----------------------GGGT-GT--CA----CAT-TTC-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out264   --------------------------GCT--CG----TAT-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out265   --------------------GTGACTGCT--TG----CAT-TCA-T-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out266   ---------------------------GT--CA-----CA-TTT-TTC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out267   --------------------ATAGATGTT--TG----CAT-TT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out268   --------------------GTGGGTG----TC----ACA-TTT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out269   --------------------CATGGGTGT--CAT---TTT-TTT--CT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out270   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out271   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out272   ----------------------GGGTGCT--CG----CAT-TT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out273   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out274   --------------------------GCT--CG----CAT-TTT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out275   --------------------ATGGGTAAC--AT----TTT-CCT-G-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out276   ---------------------------TG--AA-----CT-GAG-ACT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out277   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out278   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out279   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out280   --------------------ATGAGTG----CC----ACA-TTT-GCC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out281   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out282   --------------------ATGGGTGCT--TG----CAT-TCT-T-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out283   ---------------------------GT--TA----TGC-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out284   --------------------ATGAGTGTT--CA----CAT-TTA-C-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out285   ---------------------TGGGTGCT--CG----CGT-TTC-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out286   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out287   --------------------GTCAGTGCT--CG----CAT-TTT-C-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out288   --------------------ATGG--------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out289   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out290   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out291   ----------------------ATGGGTG--TC----ACA-TTC-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out292   --------------------GTGGGTACT--C----GCAT-TTT--CT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out293   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out294   --------------------ATGCGTGTC--AC----ATT-TTC---C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out295   -------------------------GTGT-TCA----TAT-ATC-ATT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out296   ---------------------TGAGTGCT--CA----CAT-TTA-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out297   ---------------------TGGG-TGC--TC----GCA-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out298   --------------------ATGGGTGCT--TG----CAT-TT--T-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out299   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out300   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out301   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out302   ----------------------GGTT-GT--TA----CAT-TTT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out303   --------------------ATGGCTGCG--TG----CAT-TCA-T-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out304   --------------------ATTGTTGCT--CA----CGT-TGA-T-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out305   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out306   --------------------ATGGGTGCT--CG----CAT-T--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out307   ---------------------------TG--TC-----GC-ATT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out308   --------------------ACAAGTCTC--AA----ACA-TGT-G-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out309   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out310   --------------------ATGGGTGCT--CG----CGT-TTC-C----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out311   --------------------ATGAATG----TC----ACA-TTT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out312   --------------------A-TGGTGTT--CGC---ATT-TTT------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out313   --------------------ATGGGTGTC--AC----ATT----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out314   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out315   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out316   ------------------------GGGTA--TC----ATA-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out317   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out318   --------------------ATGGATGT----C----ACA-CTT-CTC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out319   ----------------------GGGT-GC--CA----CGT-TTT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out320   ---------------------TGGGTGCT--CA----CAT-TTA-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out321   --------------------GTGGGTGCT--CA----CAT-TT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out322   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out323   --------------------ATGGATGTT--TG----TAT-TTC-C----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out324   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out325   ------------------------GTGTT--CA----CAT-TTT-ATC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out326   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out327   --------------------ATGAGTGCT--CG----CAG-TTA-T-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out328   ---------------------------GC--TC----ACA-TTA-CTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out329   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out330   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out331   --------------------ATGGGTGCT--CG----CAT-TTA-C-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out332   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out333   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out334   --------------------ATGTGTGTC--A------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out335   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out336   ---------------------TGGG-TCC--TT----ACA-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out337   -------------------------TGTC--CA----CAT-TTA-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out338   --------------------ATGAGTG----TC----ACA-TTT-CCC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out339   ---------------------TGGG-TGT--TC----GCA-TTT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out340   --------------------TTATTTGTT--CG----C-A-TTT-T-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out341   --------------------ATGGATGCT--C-AC---------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out342   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out343   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out344   ----------------------GGGTGTT--CG----TAT--TT-TTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out345   --------------------GTGGGTG----TC----ACG-TTT-CTC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out346   --------------------CATGTGTGT--CGC---ATT-TAT--CT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out347   ---------------------TGGGTGCT--CG----CAT-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out348   ---------------------TGTG-TGT--TC----GCA-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out349   --------------------ATATATGTT--CA----CAT-TTA-C-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out350   ----------------------GGGTGTT--CA----CAT-TTT-TTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out351   ---------------------TGGG-TGC--TC----ACA-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out352   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out353   --------------------ATGTGTGAT--C------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out354   --------------------ATGGGTGAT--CAC---ATT-TTT--TA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out355   --------------------TTGTGTGTC--AT----ATT-TAT---C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out356   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out357   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out358   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out359   --------------------ATGGGTGAC--GC----ATG-CTG-GAC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out360   -------------------------TGTT--A------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out361   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out362   ----------------------GGGCACT--CG----TTTTTAC-CTA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out363   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out364   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out365   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out366   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out367   --------------------TGGATATAA--CATTTTTCT-AGA--TT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out368   -------------------------GACT-TGG----TAG-CGA-CAT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out369   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out370   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out371   --------------------ATGGGTGCT--CA----TCT-TTA-C-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out372   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out373   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out374   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out375   --------------------ATATGGGTG--TC----ACA-TTT-TCC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out376   --------------------ATGGGTGCT--CG----CAT-TTC-G-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out377   ---------------------TGGG-TGC--TC----GTA-TTT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out378   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out379   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out380   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out381   -------------------------TGCG--TG----CAT-TCA------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out382   --------------------ATGAGT------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out383   ----------------------GGGT-GT--CA----CAT-TTT-CTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out384   --------------------ATGTGTGCT--TGT---TTT-TTC--CT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out385   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out386   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out387   --------------------ATGGTTGTC--GC----ATA-TAC---C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out388   -----------------------------------------------T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out389   ------------------ATTTTTCCG----------CAT-TA-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out390   TTAGACT----------TACGTGGTGGCT--CA----CAT-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out391   ----------------------GGGTGCT--CA----CAT-TTA-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out392   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out393   -------------------------TGAT--TG----CAT-TTC--CT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out394   ----------------------GGGTGCT--CA----CCT-TTA-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out395   ---------------------TGGGTGCT--CA----CAT-TTC-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out396   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out397   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out398   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out399   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out400   --------------------ATGAATAAT--CA----TAC-TTT-T-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out401   -------------------------TGCT--CG----CAT-TTT-CTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out402   ---------------------TGAGTGCT--CA----CAT-TTA-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out403   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out404   ----------------------GGGTGGT--CG----CAT-TTT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out405   --------------------ATACTTTTA--CA----TTT-AAA-T-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out406   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out407   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out408   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out409   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out410   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out411   -------------------------ACAA--GC----A------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out412   --------------------TTCAGAATT--TAA---CCG-GCGTTTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out413   --------------------ATGAGTGCT--CG----CAT-TTA-T-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out414   ------------------------AGGTG--TC----ACA-TTT-CCC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out415   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out416   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out417   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out418   ----------------------GGGT-GT--CA----TAT-TTT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out419   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out420   --------------------------GAT--TG----CAT-TTT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out421   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out422   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out423   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out424   ----------------------G----------------------GTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out425   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out426   ----------------------ACGTGCT--TGC---ATT-TTT------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out427   -----------------GACGTATGGGTG--TC----ACG-GTT-TCC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out428   ----------------------GGGT-GT--CA----CAT-TTC-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out429   --------------------ATGGGTGCT--CGT---ATT-TTT--CT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out430   ----------------------GGGTGCT--CG----C-A-TTT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out431   ----------------------GGGTGCT--CG----AAT-TTC-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out432   ---------------------------TT--C------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out433   -------------------------TGAT--CG----CAT-T---TCC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out434   --------------------TGTGGCTGC--TCG---CAT-TTC--CT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out435   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out436   --------------------ATGAGTGTT--CG----CAT-TTA-C-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out437   --------------------AATGGTGGT--CAC---ATT-TAC--CT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out438   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out439   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out440   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out441   ----------------------GGGTGCT--CA----CAT-TTA-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out442   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out443   ----------------------GGGT-AT--CA----CAT-TTT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out444   ----------------------GGATGCT--CG----CAT-TTC-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out445   --------------------ATGAGTGAT--TG----TAT-TTC-G-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out446   ----------------------GGGTGCT--CG----CAT--TT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out447   ------------------------------------------TT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out448   --------------------------TGC--TC----GCA-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out449   ---------------------------GC--TC----ACA-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out450   ---------------------TGGGAGCT--CG----CAT-TTC-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out451   ---------------------TGGG-TGT--TT----GCA-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out452   -------------------------T-----GT----CAC-ATT-TTC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out453   ----------------------GGATGCT--CG----TAT--TT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out454   -----------------GATATGTGTGTC--------ACA-TTT-TAC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out455   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out456   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out457   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out458   ----------------------GGGT-GC--TT----ACA-TTA-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out459   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out460   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out461   ---------------------------GT--CA-----CA-TTT-TTC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out462   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out463   ----------------------GTGTGCT--CG----T---ATT-TTC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out464   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out465   --------------------ATGGCAGTT--CG----CAT-TTT-C-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out466   ----------------------GGGTGCT--TG----T-A-TTT-TTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out467   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out468   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out469   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out470   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out471   --------------------GTGGGTGCT--CG----CAT-TTT-T-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out472   ----------------------GAGT-----GT----CAC-ATT-TCC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out473   --------------------ATGGGTGTT--CG---CATT-TCC--CT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out474   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out475   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out476   --------------------CGTGAGTGT--CAC---ATT-TTT--CT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out477   --------------------ATGCGTGCT--CG----CAT-TTT-C-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out478   --------------------AGGGTGCTT--GC----ATT-TTA-C-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out479   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out480   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out481   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out482   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out483   --------------------ATGGATGTT--CA----CCT-TAC-T-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out484   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out485   --------------------------CAT--GCATGCATT-TAG--CT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out486   ----------------------GTT--GT--CA----CAT-TTT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out487   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out488   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out489   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out490   ----------------------GGGTGCT--CG----CAT-TTC-ACT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out491   ACTTGACATGGATGTCACATCGTGGTCTG--GT----TCC-TTG-TGG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out492   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out493   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out494   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out495   -----------------TATATGGGTGT----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out496   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out497   ----------------------GGGT-GA--CA----CAT-TTC-CTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out498   --------------------AAATGTGCT--CA----CAT-TTT-T-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out499   ----------------------GGGT-GT--CA----CAT-TTC-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out500   --------------------ATGAGTGCT--CG----TAT-TTT-T-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out501   -------------------------TGTT--CA----CAT-TT--CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out502   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out503   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out504   --------------------ATCGGTACT--CG----CAT-TTT-T-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out505   --------------------GTGGGTGCT--CA----CAT-TTA---C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out506   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out507   -----------------GACATATGAGTG--TC----ACA-TTT-TTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out508   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out509   -------------------------GTGC--TC----GCA-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out510   ---------------------TGGGTGCT--CA----CAT-CTA-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out511   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out512   --------------------ATGGGTG----TC----ACA-TTT-CTC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out513   -------------------CATGGGTGCT--CG----CAT--TA-CTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out514   --------------------ACGTGCGCT--CAG---ATT-TTC--TA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out515   ----------------------GGGT-GT--CA----CAT-TTC-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out516   ----------------------------------------------CT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out517   --------------------------------G----AAT-TT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out518   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out519   ----------------------GGGTGCT--CA----CAT-TTT-CTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out520   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out521   --------------------TGGATGCTC--GT----ATT-TAC---C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out522   --------------------------GCT--CG----CAT-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out523   ---------------------AGTGCTGA--TC----ACG-TTA-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out524   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out525   --------------------ATGGGTGTC--AC----ATT-TTC---C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out526   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out527   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out528   ----------------------GGTTGCT--CG----CAT-TTC-CTA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out529   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out530   --------------------ATGGGTGCT--CG-----CA-TTT-C-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out531   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out532   --------------------ATGGCTGTC--A-----CAT-TTT--CC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out533   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out534   ---------------------------GC--TC----ACA-ATA-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out535   ---------------------------TG--GC-----AT-GGG-TGC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out536   --------------------ATGGGTTCT--CG----AAT-TTA-C-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out537   --------------------GTGGGTGCT--CG----CAT-TTT-T-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out538   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out539   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out540   --------------------ATGGGTACT--T------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out541   -------------------------TGAT--TG----TAT-TTA-GTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out542   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out543   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out544   ------------------TTTCTTGTGCT--CG----CAT--TT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out545   --------------------ATGGGTGCT--CGC---ATT-TTC--TG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out546   ----------------------GGAT-GT--CA----TAT-TTC-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out547   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out548   --------------------GTGGGTGCT--CG----CAT-TTC-C-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out549   ---------------------TGGG-TGT--TT----GCA-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out550   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out551   -------------------------TATT--TG----TAT-TTT-TCTTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out552   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out553   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out554   ---------------------------GT--CA-----AA-TTT-CAC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out555   --------------------ATGGGTGTC--AA-----AT-TTC-A-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out556   --------------------A---TGGTG--TC----ACA-TTT-CAC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out557   ----------------------GGATGCT--CG----CAT-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out558   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out559   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out560   --------------------ATGGGTAAT--CA----CAT-TAC-C-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out561   ----------------------GGGTGCT--CG----TAT-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out562   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out563   -------------------------TGCT--CA----CAT-TTA-ACT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out564   -------------------------GGTG--TC----ATA-T--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out565   ---------------------------GT--CA-----CA-TTT-TCC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out566   ----------------------GAGT-GT--CA----CAT-TTC-CTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out567   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out568   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out569   ----------------------GAGTGCT--CG----CGT--TT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out570   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out571   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out572   --------------------ATGGATATC--AC----AT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out573   --------------------------GCT---C----GCA-TTT-GTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out574   --------------------ATGGGTAGC--CG----CAT-TTA-T-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out575   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out576   --------------------ATGGGTTGC--CAC---ATT-TATTTTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out577   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out578   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out579   --------------------ATGGATG----TC----AAA-TTT-CT---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out580   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out581   --------------------CGCATTTTC--ATG---GA-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out582   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out583   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out584   --------------------ATATGGGTG--TC----ACA-TTT-C----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out585   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out586   -------------------------TTTT--CA----CAT-TTC-T----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out587   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out588   ---------------------------GT--CA-----TA-TTT-TCC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out589   --------------------GATGGGTGT--CAT---ATT-TCC--CT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out590   ----------------------GGGT-GT--CA----CAT-TTA-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out591   ----------------------GGGT-GT--CA----CAT-TTC-CTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out592   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out593   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out594   --------------------AA---CTTT--CA----CAT-TTA-C-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out595   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out596   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out597   ---------------------TGAGTGCT--CG----CAT-TTC-CTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out598   ----------------------GAGTGCT--CG----CGT-TGT-TTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out599   ---------------------TGTGTGCT--CA----CAT-TTA-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out600   ---------------------------GG--AA----TCA-TTT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out601   -----------------GACGTGGA-TGT--CA-----CA-TTT-TTC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out602   ----------------------GGGTGCT--CG----CAT-TTC-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out603   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out604   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out605   ----------------------GGATGCT--TA----CAT-TGT-CTA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out606   ---------------------------GA--TC----ACA-TTT-CCA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out607   ----------------------GGGT-GT--CA----CAT-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out608   -------------------------AACT--CA----CAT-TTA-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out609   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out610   --------------------------GGT--TC----AAG-TTC-CGA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out611   ----------------------GGGTGCT--CA----CAT-TTA-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out612   --------------------ATGAACGCT--CA----CAC-TTG-C-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out613   TTGTAAACTT--------AACATGGGTGC--TC----ACA-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out614   --------------------ATGAGTGTC--AC----ATT-TCC------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out615   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out616   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out617   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out618   -------------------------T------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out619   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out620   ----------------------TAGT-GT--CA----CAT-TTT-ATT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out621   ---------------------------GT--CA-----CA-TTT-TCC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out622   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out623   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out624   --------------------GTGGGTGCT--CA----GAT-TTT-T-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out625   --------------------------TGC--TC----GCA-TTT-TTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out626   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out627   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out628   ------------------AC--------T--TT-----TA-TTT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out629   --------------------AACCGGACA--TT----AGG-GTG-C-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out630   --------------------ATAGATG----TC----ACA-TTT-ACC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out631   --------------------ATGGGTGCT--CG----CAT-TTT-C-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out632   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out633   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out634   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out635   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out636   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out637   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out638   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out639   -------------------------TGG----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out640   --------------------GTGGCTGTC--AT----ATT-TTC---T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out641   ----------------------GAGT-GT--CA----CAT-TTT-CTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out642   ----------------------ATGGGTG--TC----ACA-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out643   --------------------ATTGGGTAC--ACAGCGAGA-CGT--CT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out644   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out645   --------------------------ACG--TG----TGT-TCA-TAT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out646   TTCTAAACTTGACATGGGTGT---CACAT--TT----TCA-TTT-TCC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out647   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out648   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out649   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out650   --------------------ATGGGTGTT--CG----AAT-TAC-T-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out651   --------------------ATATGTG----TC----AAA-TTA-CTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out652   TGG-----------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out653   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out654   --------------------GTGGATGCT--TG----C-A-TTT-T-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out655   --------------------------CAC--TT----GCC-ATG-GGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out656   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out657   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out658   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out659   --------------------ACATGGATG--TC----ATG-TTT-TCC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out660   --------------------ATGGGTG-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out661   --------------------ATGGGTGCT--CAC---ATT-TAT--CT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out662   --------------------ATGGATAC---TC----ACA-ATT-ACT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out663   --------------------------GCT--CG----CAT-TTT-CTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out664   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out665   -------------------------TGAT--CA----TAT-TTA-CGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out666   ------------------------GGGTG--TC----ACA-TTT-CTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out667   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out668   -------------------------CCCAGCTA----GAT-TTC-TAA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out669   --------------------ATGGGTGCT--CGC---ATT-TTC--TG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out670   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out671   ---------------------------GT--TC----ACA-TTT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out672   ----------------------GGGT-GT--CA----CAT-TTC-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out673   -------------------------------------------C-CAG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out674   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out675   --------------------CTGGGTGCT--CGC---ATT-TTC--CT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out676   --------------------ATGGGTGT----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out677   TTAGAGA---------CTTGACATGGGTG--CT----CAC-GTT-TTC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out678   --------------------ATGGGTG----TT----ACA-TTT-ACC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out679   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out680   --------------------ATTGGCGGT--AG----CAT-TGA-A-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out681   --------------------ATGTGTGCT--TG----C-A-TTT-T-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out682   ----------------------GGGT-GT--CA----CAT-TTC-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out683   --------------------GTGGGTGCT--CG----CAT-TCT-C-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out684   --------------------GTGGGTACT--CG----TAT-TTT-C-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out685   --------------------ATGAGTCTC--AC--------ATT-C-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out686   --------------------------GCT--CT----CAT-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out687   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out688   ----------------------GGGT-GT--CA----CAT-TTT-T----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out689   --------------------GGCATGGAT--CG----CAT-TTC-T-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out690   --------------------ATGGGTGCT--CGT---ATT-TTC--CT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out691   ----------------------GGGTGAT--CG----CAT--TT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out692   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out693   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out694   --------------------ATGGATGCT--CG----CAT-TTC------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out695   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out696   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out697   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out698   ----------------------GGGTGCT--CG----CAT-TTC-CTA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out699   ---------------------TGGGTGCT--CG----CAT-TTC-CTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out700   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out701   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out702   ----------------------GGGTGCT--CG----CAT--TT-ACT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out703   -------------------------TG----------CAT-TTG-TGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out704   ----------------------GAGTGCT--CA----CAT-TTA-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out705   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out706   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out707   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out708   ----------------------GGGTACT--CA----CAT-TTA-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out709   ----------------------GGGTGTT--CG----CAT--TT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out710   --------------------CATGGGTGT--TA----CAT-TTT---T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out711   --------------------ATGGGTGCT--CG-----TA-TTT-C-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out712   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out713   --------------------------GCT--CG----CAT-TTT-TC---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out714   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out715   --------------------TTGCCTA----TC----ATA-TTT-TTC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out716   TTCTAAA--------TTTTGACACGGGCG--TC----ACA-TTT-GCC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out717   --------------------ACGGATATT--CG----TAT-TTA-C-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out718   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out719   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out720   --------------------ATGTGTGCT--CG-----CA-TTT-T-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out721   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out722   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out723   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out724   --------------------ATGGGTG----TC----ACA-TTT-TCC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out725   ---------------------TGGGTGCT--CG----CAT-TTC-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out726   ----------------------AGGTGCT--CA----CAT-TTT-GCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out727   ----------------------GGGTGCT--TG----CAT--TT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out728   --------------------ATGGGTGCT--CG----C-A-TTC-C-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out729   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out730   --------------------------GCT---C----GCA-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out731   ----------------------GGATGC--------------TC-ATA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out732   -------------------------CGATGCTC----ACA-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out733   --------------------TTACATTTA--CT----GGA-TTT-A-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out734   ---------------------TGGG-TGC--TT----GCA-TTT-TCA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out735   --------------------GGGTGTC----------ACA-TTT-TCC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out736   -------------------------TGCT--CA----CAT-TTT------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out737   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out738   --------------------ACGGGTGCT--CA----CAT-TTT-T-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out739   --------------------ATGTGCGCT--CA----CAT-TTA--TC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out740   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out741   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out742   --------------------ATGTATGCT--C------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out743   ---------------------------GT--CA-----CA-TTT-CCC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out744   -----------------GACATGAG-TGT--CA-----CA-TTT-TTC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out745   --------------------------GTT---T----GTA-TTT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out746   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out747   --------------------ATATGATGG--GT----GTC-ACA---T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out748   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out749   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out750   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out751   ---------------------------GT--CA-----GA-TTT-TTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out752   ---------------------TGGG-TGG--TC----GCA-TTT-TCC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out753   --------------------ATGGGTGTT--CA----CAT-TAA-C-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out754   --------------------ATGGATGTT--CAC---ATT-TAC--CT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out755   --------------------ATGGGTG-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out756   ----------------------GGGTACT--CG----CAT--TT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out757   ----------------------GGGT-TT--TA----CAT-TTT-ATT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out758   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out759   ----------------------GGGT-GT--CA----CAT-GTC-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out760   ----------------------GGGT-GT--CA----CAT-TTC-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out761   --------------------AATTGGTGT--TCA---CGT-TTATCTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out762   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out763   --------------------ATTGGTATT--CGC---ATT-TTT--TT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out764   ---------------------------GG-----------------AT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out765   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out766   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out767   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out768   ---------------------TGGG-TGC--TC----GCA-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out769   --------------------GTGTGTGTT--CG----ATC-ACA---T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out770   ----------------------GGGTGCT--CG----CAT-TTC-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out771   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out772   --------------------ATAGGTGTT--TA------T-ATT-T-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out773   --------------------ATGAGTGTC--AC----ATT-TTT---C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out774   --------------------ATGCAAGCT--TG----CAT-TTT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out775   --------------------ATGGGTGCT---C----GTA-TTT-C-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out776   ---------------------TGGGTGCT--CG----TAT-TTC-CTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out777   -------------------------GGTG--TC----ATA-T--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out778   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out779   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out780   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out781   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out782   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out783   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out784   TAGGTGAGTATAGACTTGACATGAGTGCT--CA----CAT-TTC-CTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out785   --------------------GTGGGTGCT--CCC---ATT-TTC--TG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out786   -----------------GACATGTGTGTT--TA----TAT-TTT-TTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out787   ---------------------------GT--CA-----CA-ATT-TTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out788   ------------------GTGTGCACGTT--CG----CAT-TTT-T-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out789   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out790   -----------------GACATGGG-TGT--CA-----CA-TTT-TTC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out791   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out792   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out793   ---------------------TGGGTGCT--CG----TAT-TTC-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out794   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out795   AGGATTTAATCGGCGCTATTTTTTCAGTG--CT----CAC-ATT-TTC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out796   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out797   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out798   ---------------------TGGG-TGC--TC----GCA-TTT-TTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out799   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out800   ----------------------ATGGGTG--TC----ACA-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out801   -------------------------TGCT--CG----TGT-TTA-TC---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out802   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out803   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out804   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out805   ---------------------TGGGTGCT--CA----CAT-TTA-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out806   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out807   ----------------------GGGT-GT--CA----CAT-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out808   -----------------GACATATGGGTG--TC----ACA-TTT-CTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out809   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out810   ----------------------GTGT-GT--CA----CAT-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out811   -------------------------GATG--TC----ACA-TTT-CCA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out812   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out813   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out814   -------------------------TACT--CG----CAT-TTA-CTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out815   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out816   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out817   --------------------ACGAGTGCT--CT----CTT-TTA-C-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out818   -------------------------GGTG--TC----ACA-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out819   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out820   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out821   ACTGAGACTATCTCAGATGGTCTGATTCC--TT----GCG-GTG-GAA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out822   ----------------------GGGT-GT--CA----CAT-TTT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out823   ---------------------TGGTTGCT--CG----CAT-TTT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out824   ---------------------TGAGTGAT--TG----CAT-TTA-TTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out825   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out826   --------------------ATACGTGTT--A-----CAT-TTT--TC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out827   ----------------------GTGT-GT--CA----CAT-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out828   ----------------------GGGTGCT--CG----CAT-TTT--CT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out829   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out830   --------------------------TCT--CA----CAT-TTC-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out831   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out832   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out833   --------------------------GCT--TG----CAT-CTC-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out834   --------------------GTGGGTATC--AC----AGT-TTC---C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out835   ---------------------------GA--CA----TTG-TCG-AAG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out836   --------------------TTCCGTTTG--GC-----AT-TGC-G-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out837   ---------------------------CT--CA-----CA-TTT-ACC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out838   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out839   -----------------GAGATGGG-TGT--CA-----CA-TTT-TTC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out840   ----------------------------T--CG----CAT-TTT-CTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out841   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out842   ---------------------TGGGTGCT--CG----CAT-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out843   --------------------ATGGCTGCT--CG----CAT-TTA-A-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out844   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out845   --------------------ATGAGTGCT--CG----CAT-TTA-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out846   ----------------------GGATGCT--CA----CAT-TTC-CTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out847   --------------------ATGGATGCT--CA----CAT-TTT---C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out848   ----------------------GGGT-CT--CA----CAT-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out849   ---------------------TGGATGTT--CG----CAT-TTT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out850   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out851   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out852   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out853   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out854   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out855   --------------------ATGGATGCT--CG----CAT-TTT-C-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out856   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out857   --------------------ATGAGTG----TG----ACA-TTT-AC---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out858   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out859   --------------------CACTACTAG--AA----ATC-ACA-G-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out860   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out861   --------------------ATGGGTCCT--TG----CAT-TTT-T-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out862   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out863   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out864   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out865   ------------------------GAGTG--TC----ACA-TTT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out866   --------------------GTGGGTGTT--CG---CATT-TTT--CT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out867   --------------------ACAGGTGCT--CG----CAA-TTA-T-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out868   --------------------GTGGATGCT--TG----CGT-TTT-T-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out869   -------------------------CGAA--CT----CAG-ATT-CAA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out870   --------------------ATGGGTGCT--CT----CAT-TTT-C-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out871   --------------------ATGGGTGCT--CG----CAA-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out872   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out873   --------------------CGCATTTCC--TT-----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out874   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out875   ----------------------GGATGCT--CG----CAT-TTC-ACT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out876   ---------------------TGGG-TGC--TC----GCA-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out877   ---------------------AGGGTGCT--CG----CAT-TTC-CTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out878   --------------------ATGGGTGTT--CG----CAT-TTC-C-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out879   -------------------------TGTT--CG----CAT-TTA-TCA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out880   --------------------ATGTGTGTT--TG----CAT-TTA-T-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out881   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out882   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out883   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out884   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out885   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out886   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out887   --------------------------GTG--C-TCGCATT-TCC--CT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out888   --------------------ATGGGTG----TC----ACA-TTT-CC---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out889   ----------------------GTGTGCT--CG----CAT--TT-ACT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out890   --------------------CATGAGTGT--TG----TAT-TTT-T-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out891   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out892   --------------------ATGGGTGCT--CA---CATT-TTT--TT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out893   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out894   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out895   --------------------TATGTGGCT--CAG---AAT-TAC--CT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out896   --------------------CATGGGTGT--CAT---ATT-TTT--TT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out897   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out898   ---------------------------GT--GC-----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out899   --------------------ATGGTTGCT--C-AC--ATC-TAT--TT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out900   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out901   ------------------------------------------TC-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out902   --------------------ACGGGTGCT--C-AC--ATT-TAC--AT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out903   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out904   ----------------------------------------------GT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out905   --------------------ATGGGTGGT--TGC---ATT-TAC--TT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out906   --------------------------------C-----AT-TTA-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out907   --------------------ATTGATGCT--CG----CAT-TTA-T-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out908   -------------------------TGCC--TC----A------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out909   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out910   --------------------------TTT--AA----CCG-ACG-C-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out911   -------------------------TGCA--CA----CAT-TTA-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out912   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out913   --------------------ATGGGCCGT--CG----CAT-TTA-C-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out914   ----------------------GGGTGCT--CA----CAT-TTC-CTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out915   ---------------------------TC--AC-----AG-TTA-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out916   ----------------------GGGTGTT--TG----CAT-TTT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out917   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out918   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out919   -------------------------TGAA--CG----TAC-TTA-TTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out920   ----------------------GGGTGTT--CG----CAT-TTA-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out921   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out922   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out923   --------------------ATGGCTG----TC----ACA-TTT-CTC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out924   --------------------GTGGGTGAT--CG----CAT-TTC-A-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out925   ---------------------------GT--CA-----CA-TTT-TCC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out926   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out927   ---------------------TGGGTCTC--G-----CAT-TTT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out928   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out929   ------------------GTTGGCATGGA--TG----CCC-G--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out930   ---------------------TGGG-TGC--TC----GCA-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out931   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out932   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out933   ---------------------TGGG-TGC--TC----ACA-TTT-TTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out934   ------------------------GTGTA--TC----ACA-TTT-TTC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out935   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out936   -------------------------GTGC--TT----GCA-TTT-TTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out937   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out938   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out939   ---------------------------AG--AT-----GT-GTT-CAC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out940   ----------------------GGATGCT--CG----CAT-TTT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out941   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out942   ----------------------GGGTGGT--CG----CAT--TT-CTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out943   ---------------------------CA--CA----G------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out944   --------------------ATGGGTGCT--CG---CATT-TCG--CT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out945   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out946   --------------------ATGGGTG----TC----ATA-TTT-CTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out947   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out948   --------------------ATGGATGCT--CG-----CA-TTG-T-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out949   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out950   -----------------CTCATGGGTGCT--TA----CAT-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out951   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out952   ----------------------GGGTGCT--CA----CAT-TTC-TTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out953   -----------------GATATGGG-TGT--CA-----TA-TTT-TCA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out954   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out955   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out956   --------------------ATGGGTGCT--TG----TAT-TTT-C-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out957   ----------------------------------------------CT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out958   --------------------ATAAGTGCT--CAC---ATT-TTC--TT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out959   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out960   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out961   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out962   -------------------------TGCT--CA----CAT-TTA-CAT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out963   ---------------------TGGGTGCT--CG----CAC-TTC-CTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out964   ---------------------------GA--AC--------TGA-GCC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out965   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out966   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out967   --------------------GTGAGTG----TC----ACA-TTT-TTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out968   --------------------CATGTGTTC--A-----CAT-TTC--CT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out969   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out970   --------------------ATGGGCG----TC----ACA-TTT-CCC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out971   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out972   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out973   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out974   -----------------GACGTGGA-TGT--CA-----CA-TTT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out975   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out976   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out977   -------------------------TGCT--TG----TAC-ATC-CAT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out978   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out979   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out980   ---------------------TGTGTTGC--TC----GCA-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out981   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out982   --------------------ATGGGTGTC--A-----CAT-TTT--CA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out983   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out984   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out985   --------------------ATGGGTGTC--AC----ATT-TTC---T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out986   ---------------------TGGGCGCT--CG----CAT-TTC-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out987   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out988   ----------------------GTGT-GT--CA----CAT-TTC-CTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out989   --------------------------TGC--TC----GCA-TTT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out990   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out991   ----------------------------T--TT-----TT-TCA-GTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out992   --------------------ATGGGTGCT--C----GCAT-TTC--CT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out993   ----------------------GGGTGCT--CG----CAT-TTC-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out994   ---------------------TGGGTGCT--CG----TAT-TTC-CTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out995   ------------------------------------------TC-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out996   ---------------------CGGGTGCT--CG----CAT-TTT-CTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out997   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out998   ----------------------GGGT-GT--CA----CGT-TTC-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out999   ----------------------------T--CG----CAT-TTC-TGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1000  ----------------------ATGGGTG--TC----ACA-TTC-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1001  -------------------------GGTG--TC----ACA-TTT-TTC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1002  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1003  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1004  --------------------TTGGGTGCT--CG----TAT-T-T-T-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1005  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1006  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1007  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1008  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1009  -------------------------TGCT--CG----AAT-TTA-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1010  -----------------------TGTGTG--CT----CAT-TTA-ACT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1011  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1012  ------------------G------TTTT--T------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1013  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1014  -------------------------TGTT--TG----TAT-TTA-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1015  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1016  --------------------ATGGGTGTT--CG----TAT-TTT-C-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1017  --------------------ATGGACGC---TC----ACA-TTA-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1018  --------------------GTGTGTGCT--C----GCAT-TTT--TT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1019  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1020  ---------------------------CA---------AC-CCA-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1021  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1022  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1023  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1024  --------------------ATGTGTTA----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1025  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1026  --------------------ATGACTGTC--AC----ATT-TTT---T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1027  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1028  ------------------G------TGCT--GG----CAT-TTT--CT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1029  --------------------ATATGGGTG--TC----ACA-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1030  ---------------------------GA--CA-----AA-TTT-GCC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1031  ----------------------GGGTGCT--CG----CAT-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1032  ---------------------TGAGTGCT--TG----TAT-TTT-TTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1033  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1034  -----------------AGGGTGTC-A-----------CA-TTT-ACC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1035  ----------------------GGGT-GT--CA----CAT-TTC-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1036  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1037  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1038  ----------------------GGGTGCT--CG----CAT-TTT-CTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1039  --------------------ATGAGTGCT--TGC---ATT-TTC--TG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1040  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1041  --------------------CATGGTAGT--CAC---ATT-TGC--TT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1042  --------------------------GGT--TG----GTT-TCT-TG---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1043  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1044  ----------------------GGGT-GT--CA----CAT-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1045  ----------------------GGGTGCT--CA----CAT-TAC-CTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1046  --------------------ATGGGTG----TC----ACG-TTT-CTC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1047  --------------------GGATGCTGG--C------AT-TTC-A-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1048  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1049  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1050  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1051  -------------------------TGCT--TA----CAT-TAA-TTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1052  --------------------ATGTGTGTC--AC----ATT-TAT---C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1053  --------------------ACCGGTGC---TC----ACA-TTT-ACC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1054  --------------------ATGGGTGCC--A-----TAT-TTT--CC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1055  --------------------ATTGGTGAT--CA----CAT-TTA-T-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1056  TCCTTGTGGTGGAACCAGCCCACCCAGAT--GT----CAC-ATT-TAC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1057  --------------------ATGAGTTGT--CG----TAT-TTA-C-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1058  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1059  --------------------------------------AC-TCA-GTC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1060  --------------------TCGCATTTA--TT----TGG-ATG-TAT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1061  --------------------------GCT--TG----CAT-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1062  --------------------ATGGGTGCT--C----ACAA-TTT--CT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1063  -------------------------TGCT--CG----CAT-TTA-TGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1064  ---------------------TGGGTGTT--CG----CAT-TTC-CTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1065  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1066  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1067  --------------------CATGGGTGT--CAC---ATT-TCC--CT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1068  --------------------ATGGGATAT--CA----CA-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1069  ----------------------GGGT-GT--CA----CAT-TTC-TTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1070  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1071  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1072  -----------------GACATATGTGTG--TC----ACA-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1073  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1074  -----------------AGCAAGGGTGTT--CG----TAT-TTA-CTA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1075  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1076  -------------------------------------------C-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1077  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1078  ---------------------TGGGTGCT--CG----TAT-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1079  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1080  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1081  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1082  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1083  ------------------------GATGC--CC----ACA-CTT-ATC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1084  --------------------ATAGGAGTC--GC-----AT-TTT-C-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1085  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1086  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1087  -------------------------TGAT--CA----GAT-TTA-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1088  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1089  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1090  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1091  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1092  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1093  -------------------------TGCT--CA----CAT-TTA-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1094  --------------------CATGGGTGT--CAC---AGT-TTC--CT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1095  --------------------------GCT--CG----CAT-TTT-CTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1096  -------------------------TGTT--CA----TAT-TTA-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1097  --------------------ATCAGTGGT--CA----CAT-TTA-T-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1098  ---------------------TTGATGCT--AG----CAT-TTC-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1099  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1100  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1101  ---------------------TGGCTACT--CG----TAT-TTT-CTA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1102  ---------------------------GT--CA-----CA-TTT-TCC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1103  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1104  --------------------CATGGGTGT--CAC---ATT-TCC------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1105  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1106  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1107  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1108  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1109  ----------------------GGGTGTC--CG----CAT-TTA-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1110  --------------------GTGGGTGTC--AC----ATT-TTC---C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1111  ----------------------GGGTGTT--CG----TAT-TGC-ACT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1112  --------------------ACGGGTGCT--CG----CAT-TTC-C-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1113  ----------------------ATGGGTG--TC----ACA-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1114  ----------------------GGGT-GT--CA----CAT-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1115  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1116  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1117  --------------------ATGTGTGTT--AA----ATT-TGC---C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1118  -----------------ACATGGGTG-----TC----AC--ATT-TTC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1119  ---------------------------GC--TC----ACA-TTA-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1120  ----------------------GGATGTT--CA----CAT-TTC-CTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1121  --------------------ATGGGTGCT--TG----CAT-TTC-C-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1122  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1123  ----------------------GTGT-GT--CA----CAT-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1124  ---------------------TGAGTGTT--CG----CAT-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1125  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1126  ----------------------GGA----------------TGC-TCG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1127  --------------------ATGGGTGTC--AC-----AT-TTC-T-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1128  --------------------GTGGGTGCT--CG----CAT-TTT-C-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1129  ----------------------GGGTGCA----------T-TTA-CAC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1130  --------------------TCAGGGTTT--AA----CTA-GTG-C-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1131  --------------------GTGG--------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1132  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1133  --------------------ACGAGTGCT--CA----CAT-TAC-C-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1134  --------------------ATGAATG----TC----ACA-TTT-CT---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1135  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1136  --------------------------GCT--CG----CAT-TTC-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1137  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1138  ---------------------TGGGTGCA---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1139  --------------------ATGGATGCT--C-AC--ATT-ATC--TG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1140  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1141  --------------------ATGGGTGTT--CG----CAT-TT--C-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1142  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1143  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1144  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1145  --------------------ATGGATGCT--CA----CAT-TTT-T-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1146  ---------------------TTGGTGAA--TA----CAT-TTA-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1147  ----------------------GAGT-GT--CA----TAT-TTC-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1148  ---------------------TGAG-TGC--TC----GCA-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1149  ----------------------GTGT-GT--CA----CAT-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1150  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1151  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1152  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1153  --------------------ATGAGTGT----C----ATG-TTT-TTC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1154  ------------------------GGATG--TC----ACA-TTT-TTC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1155  --------------------CATGGGTGC--AC----ATA-TAG-G-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1156  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1157  --------------------CAC----------------A-TTT-CGC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1158  --------------------TGGGTGTC--------ATAT-GTA--CC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1159  -------------------------TGCT--CG----CAT-TTT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1160  -------------------------------------CAT-TTT-C-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1161  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1162  --------------------ATAAATGTT--CG----CAT-TTT-C-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1163  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1164  ---------------------TGGG-TGC--TC----GCA-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1165  --------------------------GCT---C----GTA-TTT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1166  ---------------------TGGGTGCT--CG----CAT-TTC-ACT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1167  --------------------ATAAGTGCT--CG----CAT-TTA-C-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1168  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1169  --------------------GGCGATATG--TC----TTT-TTA-G----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1170  --------------------ATGGGTGCT--CG----CAT-TTT-C-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1171  --------------------GTGTGTGTC--A------CA-TTT--TT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1172  ---------------------------CT--TA----CAT-TTA-CTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1173  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1174  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1175  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1176  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1177  -------------------------------------TCG-CAT-TTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1178  ----------------------GGCT-GT--CA----CAT-TTT-CAT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1179  --------------------ATGGGTGCT--CGT---ATT-TTC--TG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1180  ---------------------------TC--AC-----AT-GTA-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1181  --------------------GACATTGGT--CT----CAC-ATT-G-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1182  ----------------------GGGT-GT--CA----CAT-TTC-TTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1183  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1184  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1185  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1186  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1187  ---------------------ATGGGTGT--TG----CAT-TTA-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1188  ---------------------------GC--CT-----AT-CTC-AAC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1189  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1190  --------------------ATGGGTGTC--AT----ATT-TT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1191  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1192  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1193  --------------------GTGGGTGCT--CG----CAT-TTT-C-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1194  ----------------------GGGT-GT--CG----CAT-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1195  --------------------------------T----CAT-TGT-GGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1196  ---------------------------GT--GC-----AT-CTT-T----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1197  --------------------ATTGGACGC--TC----ACA-CTT-GCC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1198  -----------------------------------------TTA-TTC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1199  -----------------GACATTTGGGTG--TC----ACA-TTT-CCC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1200  --------------------T---------------CGCA-TTC--CT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1201  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1202  --------------------GTGGGTGGT--CG----CAT----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1203  --------------------GTGGGTGGT--C------AA-ATT--TT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1204  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1205  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1206  --------------------ATGGGTGAT--ATGCTTTCA-ACG--GT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1207  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1208  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1209  --------------------ATGAGTGGT--CA----CAT-TTA-C-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1210  ----------------------AGGTGTT--GC----AT--TTC-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1211  --------------------ATGGGTGCT--CG----TAT-T-A-A-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1212  ----------------------GAGTGCT--CA----CAT-TTA-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1213  ---------------------TGGGTGCT--CA----CAT-TTA-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1214  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1215  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1216  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1217  --------------------ATATGTGCT--CA----CAT-TTA-C-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1218  -------------------------------TC----ATT-TGG-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1219  --------------------ATGGGTG-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1220  --------------------GTGGGTG-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1221  -----------------GCCATGGG-TGT--TA-----CA-TTT-TTC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1222  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1223  ----------------------GGGTGCT--CA----CAT-TTC-CTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1224  ---------------------TGGGTGCT--TG----CAT-TTC-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1225  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1226  ----------------------GGGTGCT--CG----CAT--TT-CTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1227  -------------------------TGCT--CG----TAT-TTA-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1228  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1229  --------------------ATGGGTGCT--C------AA-TTT-T-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1230  ----------------------GGGTGCT--CG----TGT-TTT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1231  -------------------------TGCT--CA----CAT-TTT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1232  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1233  --------------------ATGGGTGTC--AT----ATT-TTC---C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1234  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1235  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1236  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1237  --------------------ACATGGGTG--TC----ACA-TTT-TCC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1238  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1239  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1240  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1241  ------------------------TGGTG--TC----ACA-TTT-TCC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1242  ----------------------GGGT-GT--CA----CAT-TTC-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1243  ---------------------TGGG-TGC--TC----GCA-T--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1244  TCATAGA------------------------------------C-TTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1245  --------------------ATGGTTGCT--CGT---ACA-TTT--TA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1246  -------------------------CGCT-TGC----AAT-TTA-TTC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1247  ----------------------------C--GA----CTT-GAC-ATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1248  ---------------------TGGGTGCT--TA----TAT-TTA-CC---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1249  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1250  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1251  --------------------GTGAGTGCT--CG----CAT-ATC-A-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1252  --------------------ATCGACGA---TT----ACA-TTT-ACC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1253  ---------------------TGGGTGCT--CA----CAT-TTA-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1254  ---------------------TGGGTGCT--CA----CAT-TTA-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1255  --------------------ATGTGTGCT--CA----CAT-GTT---T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1256  ----------------------GGGT-GT---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1257  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1258  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1259  ----------------------GGGTGCT--TG----CAT-TTC-CTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1260  --------------------ATGGGTGCT--CGC---ATT-TAC--TG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1261  GAGCCTATCTCAGGTGGTCTGGTTCCTTG--TG----GCG-GAA-CCA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1262  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1263  ---------------------------------------------CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1264  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1265  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1266  --------------------ATATGGGTG--TC----ACA-TTT-CTC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1267  --------------------GTCACAT---------------TT-GCC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1268  ---------------------TGGG-TGC--TC----GCA-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1269  -------------------------TGTT--CG----CTT-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1270  ----------------------GGCT-GT--CA----CAT-TTC-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1271  ----------------------TGGTGCT--CG----CAT-TTC-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1272  ------------------------GTGCT--CG----TAT-TTC-T-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1273  -------------------------T-TT--TA----TA-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1274  ---------------------TGAGTGCT--CA----CAT-TTA-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1275  --------------------ACGGGTCCT--CG----CGT-TTA-T-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1276  ----------------------GGGT-GT--CA----CAT-TTC-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1277  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1278  --------------------ATGGGCGCT--CG----T-A-TTT-C-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1279  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1280  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1281  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1282  ---------------------------CC--CA----GGA-TTT-TTC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1283  --------------------GTGTGTGCT--C-AC--ATT-TAC--CT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1284  -------------------------ACTT--GA----CAT-GTT-CGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1285  ---------------------TGGT------CA----CAT-TTT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1286  --------------------ATAGGTGCT--CG----CAT-TTT-C----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1287  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1288  -----------------GACATGGG-TGT--CA-----CA-TTT-TTC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1289  --------------------ATGGATGTC--AC----ATT-TAC---C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1290  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1291  --------------------ATGGATG----TC----ACA-TTT-CCC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1292  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1293  --------------------------------A-----CA-TTT-CTA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1294  --------------------ATGAGTGCT--CG----CAT-T--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1295  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1296  -----------------GACATACGGGTG--TC----ACA-TTT-CCC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1297  -----------------GACATGGG-TGT--CA-----CA-TTT-TCC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1298  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1299  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1300  ---------------------------GT--CA-----CA-TTT-TCC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1301  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1302  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1303  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1304  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1305  ----------------------GGGTGCT--CG----CAT--TT-CCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1306  --------------------ATGGGTG----TC----ACA-TTT-TTC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1307  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1308  TTCTAG---------ACTTGACATGGTTG--AC----ACA-TTT-TTC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1309  -------------------------TGGT--CA----TAT-TTT-TCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1310  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1311  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1312  ------------------------GCGTG--TC----ACA-TTT-TTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1313  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1314  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1315  --------------------ATGTGCGTT--CG----TAT-TTT-C----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1316  TCTTAGAC---------TTGACATATGGG--TG----TCA-CAT-TTC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1317  --------------------ATGGATGAT--CA----CA-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1318  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1319  --------------------------ATT--CG----TAT-TTT-TTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1320  --------------------ATGAGTG----TC----GCA-TTT-CTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1321  --------------------------GTT--CG----CAT-TTC-CT---

GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out0     TT-GATTT-------GTACTAGG------TTTAGCC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1     --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out2     --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out3     TGGATTAA-------TTCCAGGG-TT----TA-AC----------CAGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out4     ------------------TCAGA------TTTATTC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out5     --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out6     ------TT-------CCTGGATT------TAATTTC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out7     GGA-TTTA-------TTTCAGGA-TT----TA-AT----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out8     AA-ATTTA-------TTTTAGGA-CC----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out9     TAGATTAT-------T-ACAAAA-TT----TA-AC----------CGATG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out10    GG-ATTTA-------TTTCAGCT-TT----T-AATC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out11    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out12    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out13    ------------------------CT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out14    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out15    TGGATTTATT-------TTAGGA-TT----TA-AT----------TTGCC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out16    TGGATTA-------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out17    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out18    GG-ATTTA-------TTTTAGGA------TTAAA-C--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out19    TAAATTTA-------TTGCAAAA-TT----AA-CC----------GGCG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out20    GA-TTT-A-------TTTCAGGG-TT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out21    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out22    GA-ATTAT-------T-TCAAGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out23    AA--ATTA-------TTTCAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out24    CG-ATTAT-------T-TCAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out25    TGGA-TTA-------TTTCAGAA-TT----TA-AC----------CGACG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out26    GA-ATTTA-------TTCGAGAA-CC----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out27    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out28    TGGGTTTA-------TTCTAAGA-TT----TG-AC----------CGGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out29    GT-ATTTA-------TTCCAGGC-TT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out30    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out31    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out32    TGGATTAT-------TCGCCGGA-TT----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out33    TAAATTAT-------T----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out34    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out35    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out36    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out37    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out38    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out39    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out40    CA-GAATA-------TTTCAGGA-TT-----TAACA--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out41    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out42    TGAATTTA-------TTCCATGC-CT----TA-AT----------TGGCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out43    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out44    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out45    GG-ATTAT-------T-CCAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out46    GG-ATTTA-------TTTCAGGC------TTTATCC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out47    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out48    GG-ATTTA-------TTTTAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out49    G--AATTA-------TTTCAAGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out50    ---------------TTTCAGGATTTAA------CC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out51    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out52    ----GTGG-------TTTGGTTA------CTTATAG--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out53    GA-ATTTA-------TTCCAAGA-CC----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out54    GG-ATTTA-------TTTCAGGA-CT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out55    AG-ATTTA-------TTCTAGGC-TT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out56    AAGATTTT-------ATCTAGGA-TT----TA-GG----------GGCTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out57    ------------------------------TTAACT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out58    GA-ATTTA-------TTTCATAA------TTTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out59    AA-AATTA-------TTTCAGAA------TTTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out60    AA-ATTAT-------TC-TAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out61    GC-ATTTA-------TTTCAAGA------CCTA-AC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out62    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out63    GGA-TTTA-------CTCAAGGA-TT----CA-AT----------CGGCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out64    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out65    TA-AATTA-------TTTTAGTATT------TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out66    GG-ATTTA-------TTTCAGGA-TT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out67    ------------------------------TTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out68    TAGATTTA-------TTTTAGAA-AT----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out69    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out70    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out71    GG-AGTTA-------GTTCATGA------TTTAATT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out72    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out73    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out74    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out75    GA-TTTAT-------T-TCAGGA-TT-----TAACCGGCGCTATTCTACC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out76    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out77    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out78    TGAAATA-------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out79    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out80    GG-ATTTA-------TTTCAGGA-CC----T-AACT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out81    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out82    GAT-TTTA-------TCCTTATA-TT----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out83    TGGATTATT--------TCAGAA-TT----TA-AC----------CGACG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out84    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out85    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out86    GG-ATTTA-------TTCCAGGG------TTTA-AC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out87    GA-TTT-A-------TTCTAAGG-TT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out88    AA-TTTTA-------TTTCAGGG-TT----T-AATC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out89    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out90    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out91    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out92    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out93    TG------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out94    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out95    GG-ATTTA-------TTTCAGAA-TC----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out96    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out97    GA-ATTTA-------TTCTACGG------ATTTTGT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out98    AGT-CCTA-------ATTCAGGA-TT----TA-AC----------CGACG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out99    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out100   ----TTTCGGCTATAGTCGACGC-AT----TT-CT---------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out101   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out102   GG-ATTTA-------TTCTAGAC-TT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out103   TG-TGTTA-------TTCCAGAA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out104   TATATTATT--------TCAGGA-TT----AA-CC----------GACG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out105   AG-ATTAT-------TC-TAGAA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out106   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out107   ----------------------------------AC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out108   GA-ATTTA-------TTATAAGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out109   TGAATTTA-------TTCAAGGA-CA----TA-AC----------CGGC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out110   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out111   GG-ATTTA-------ATATAGAA------CCTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out112   GG-ATTTA-------TTCCAAGC-TT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out113   G-AATTTA-------TTTTCGAC-TT----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out114   GG-ATTTA-------TTTCAG-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out115   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out116   T-------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out117   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out118   TGGATGGATT-------CCATGG-TT----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out119   GG-ATTAT-------T-TCAGAA-TT-----TAACA--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out120   TGGA-TTA-------TTCCAGAA-TT----TA-AA----------CGGCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out121   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out122   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out123   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out124   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out125   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out126   GG-ATTAT-------T-TTAGGA-TT-----TATCC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out127   GA-ATTTA-------TTTCAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out128   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out129   GG-ATTTA-------TTTCAGGA------TGTA-AA--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out130   ATT-ATTA-------TTTCAGAA-TT----TA-TC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out131   GA-ATTTA-------TTTCAGGA-TT-----TTACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out132   GG-ATTTA-------TTCCAGGT-TT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out133   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out134   TGGATTTA-------TTTCAGAA-CC----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out135   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out136   TGGATTTA-------TTTCAGGA-CC----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out137   GG-ATTTA-------TTCCAAGC-TT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out138   TG-GATTA-------TTCCAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out139   GA-ATTTA-------TTTCAAGG------TTTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out140   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out141   GAA-TTTA-------GTAAAGCG-TT----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out142   GG-ATTTA-------TTCCAGCC-TT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out143   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out144   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out145   -----TTA-------TTTCAGGA------TTTGA-C--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out146   GA-TTTAA-------T-CCAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out147   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out148   GA-ATTAT-------TT-CAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out149   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out150   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out151   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out152   GA-ATTTA-------TTTCAGAG-TT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out153   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out154   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out155   AA-AT--T-------ATTTCAGA------ATTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out156   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out157   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out158   GG-ATTTA-------TTTCAGAA-TT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out159   GA-ATTTA-------TTTCAGGT-CT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out160   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out161   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out162   -----------------------------TTCTC-T--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out163   GA-ATT-T-------TTCCAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out164   GG-ATTAT-------TTCAGGAT-TT-----AA-----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out165   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out166   TG-TATTA-------TTCTACAA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out167   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out168   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out169   GG-ATTTA-------TTCCAGGA-AC----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out170   TGAATTTATT-------TCAGGA-TT----TA-AC----------TAGCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out171   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out172   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out173   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out174   GG-ATTTG-------TTTTAGGT-TT-----TGAAC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out175   TATATTTA-------TTTGAGGA-TC----TA-A----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out176   AA-ATTTA-------TGACAAAA------TTTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out177   GA-TTTTA-------TTTTAAAA------TGTAGCC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out178   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out179   AA-ATTTA-------TTCTATGA------TACATTG--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out180   TGA-AATT-------TTATAAAA-TT----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out181   GAA-TTTA-------TTTCAGGA-TT----TA-AT----------CAGCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out182   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out183   TCAATTTATT-------TCAGAA-TT----TA-AC----------CGACA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out184   GG-ATGTA-------TTCCAGGA------CTTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out185   TGAA-TTA-------TTACAAAA-TT----TA-AC----------GGACA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out186   GGATTTAC-------CATAATAT------ATTAACG--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out187   TGA-ATTA-------TTTCAGGA-TT----TA-AC----------CGGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out188   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out189   GG-ATT-A-------TTTCAGTA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out190   GG-ATTTA-------TTTCAGGA-CC----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out191   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out192   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out193   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out194   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out195   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out196   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out197   AAA-TTTA-------TTTCAGGA-CC----TA-A-----------CCGGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out198   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out199   TA-GATTA-------TTTCAGTA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out200   GG-ATTAA-------TTTTAGG--------GCTTAA--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out201   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out202   ----------------------A------TTTAAGA--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out203   AA-ATTTA-------TTTCAGGA------ATCAATG--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out204   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out205   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out206   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out207   GG-ATT-A-------TTCCAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out208   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out209   TTGACTTA-------TTCCAGGA-T-------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out210   GG-ATTAT-------T-CTAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out211   -G-GATTG-------TTACAGAA------TTTAGCC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out212   ------------------CTGCG------TTTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out213   GA-ATTAT-------T-TCAGAA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out214   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out215   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out216   G--AATTA-------TTTCAGGA-TT-----TAAGC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out217   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out218   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out219   TGGATTTA-------TTTCAAGA-TT----TAACC----------AGCTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out220   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out221   GA-AATTA-------TTTCAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out222   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out223   TGGATTAT-------TCCAGGA--T-------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out224   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out225   TGGATTAT-------CTCATGAT-T-----T-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out226   GG-ATTTA-------TTCTGAAA------TTTA-AC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out227   GAATTTAT-------TCTCGGGT-TT----AA-CC----------GGCG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out228   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out229   TG-CATTA-------ATTCAGGATTTAA------CC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out230   GT-ATTTA-------TTTCAAGA-TT-----TAACT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out231   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out232   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out233   GA-TTTTA-------TCGCAGGC------TTCAAAT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out234   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out235   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out236   TGGATTTA-------TTCTAGGA-TT----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out237   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out238   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out239   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out240   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out241   GA-ATTTA-------TTTCAGAA------GCTA-AC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out242   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out243   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out244   GG-ATTTA-------TTCCAGGGTTTAA------CC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out245   TGA-ATTT-------ATTTCAGG-AC----TT-AG----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out246   TGA-TTTA-------ATTCAAGA-TT----TA-AT----------CGTCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out247   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out248   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out249   ---------------TTCAAAGC-TT----AA-CC----------GACG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out250   GG-ATTTG-------TTTCGGGT------TTA------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out251   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out252   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out253   AG-ATCTA-------TTTCAGAA------TTTAACA--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out254   GG-ATTTA-------GTCCAGAC-TT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out255   TGGATTTA-------ATGCAGAA-AC----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out256   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out257   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out258   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out259   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out260   TG-AATTA-------TTTTAGAA------TTTAATC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out261   GAATTTTA-------ATCCATG----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out262   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out263   GG-ATTTT-------TTCCAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out264   GA-ATTTA-------TTCCAGGA------CCAAATC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out265   TGGATTTA-------CTTCAGTA-TT----TG-CA----------TTGCC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out266   TG-AATTA-------TTTCAGGATTTAA------AT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out267   -------A-------TTTTAGGA-TT----TA-AT----------CAGCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out268   TGGA-TTC-------TTTCAGCA-TT----TA-AC----------CGGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out269   GAA-TTAT-------TCT-AAAA-TT----GA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out270   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out271   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out272   ------------------CCTGA-CC----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out273   ----------------TCCAGGA------TTTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out274   GA-ATTTA-------TTTTAAGA------TCTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out275   ATCATACAGAATTTAAATGAAAA-TT----TA-AT----------CGGC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out276   AA-CTCAG-------ATGCTCTAGTTTCTTGTGGTG--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out277   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out278   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out279   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out280   TAGATTCA-------T--------TC----CA-AG----------CGGCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out281   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out282   AAATTTTT-------TAGAACTT-AA----TC------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out283   GG-ATTTA-------TTCCAGGT------TTTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out284   ATAATTTAACCGGCGCTACCCTC-T-------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out285   AG-ATTTA-------TTTCAGGA-CC----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out286   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out287   GAATTTTAT--------TCACGA-TT----AA-AC----------GGATG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out288   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out289   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out290   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out291   GG-ATTAT-------T-TTAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out292   GGA-TTTA-------TTTCAGGT-TT----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out293   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out294   TGGATTAT-------TTTAGAAT-T-------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out295   GG-ATTTA-------TTCTGGAG------CTTAACT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out296   GA-ATTTA-------TTCCAGGA-TT-----TCACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out297   GG-ATTTA-------TTTCATGC-TT----T-AACT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out298   TGAATTTA-------TTCCATGC-TT----TA-AC----------CAG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out299   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out300   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out301   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out302   GA-ATTAT-------T-TCAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out303   TGGATTTA-------TTTCAAGA-TT----TA-AC----------CGGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out304   TAAT-----------------------------------------CAGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out305   ---------------------------------ACT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out306   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out307   TC-CATTA-------TTTCAAA------ATTTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out308   GTTCGCATT----TCATTGA-AT-TT----AA-CC----------GGCG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out309   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out310   TAGATTTA-------TTTCAGGT-TT----A-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out311   TGAA-TTA-------TTTCAGAA-TT----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out312   -TGAATTT-------ATTTCAGG-TT----TA-A-----------CCAGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out313   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out314   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out315   ---------------TTCCAGGATTTAA------TC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out316   TG-GATTA-------TTCCAGAA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out317   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out318   TGGA-----------TTTTAGAA-TT----TA-AT----------CGGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out319   GG-ATTAT-------T-TCAGGA-TT-----TAACCGACG----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out320   GG-ATTTA-------TTTCAGGG-TT-----TAACT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out321   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out322   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out323   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out324   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out325   TAAATATA-------TTTCAAAG-TT----TA-AC----------GGAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out326   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out327   TTGATTTA-------TTTTCAAA-TT----TA-AC----------CGGC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out328   GG-ATTTA-------ATCCAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out329   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out330   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out331   TGAATTTATT-------ACAGGG-TT----TA-AC----------CGTTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out332   -------A-------TTTCAGGA------TTTAACT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out333   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out334   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out335   -----TTG-------TACCAGGA-TT----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out336   GA-ATTTA-------TTCAAGGT-TT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out337   GA-ATTTA-------TTCTAAAA------TTTAATC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out338   TGGA-TTA-------TTTCAGGA-TT----TA-AC----------CGACG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out339   GG-ATTTA-------TCCCAGGC-TT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out340   TAAATTTG-------TTTCAGGA-TT----TG-AC----------CGGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out341   ------AT-------TTCTTGGA-TT----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out342   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out343   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out344   GG-ATTTA-------TCCCAGGT-TT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out345   TGGA-TTA-------TTACAAAA-TT----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out346   CGA-TTTA-------TTCTTGTG-TT----TA-AT----------CGGTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out347   GG-ATTTA-------TTCCAGGA-AC----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out348   GG-ATTTA-------TTTCAGGC-TT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out349   TGGATTTG-------TTTCAAGG--------T-CT---------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out350   AA-TTTAT-------T-ACAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out351   GG-ATTTA-------TTACAGGC-TT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out352   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out353   --A-CATT-------TATCTGAA-TT----TA-AT----------CGGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out354   GATTTGTT-------TTAAT--------------------------TGGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out355   TGAATTAA-------ACCGGCAC-TA----T-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out356   -------A-------TTTCAGGA------TTTAAGC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out357   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out358   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out359   TG-----T-------TTCAGGAT-T-------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out360   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out361   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out362   GA-TTTAT-------TTACAAGA-TT----T-AATT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out363   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out364   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out365   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out366   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out367   AT--------------TCCAGGA-TT----TA-AC----------TGCGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out368   GA-ATTTA-------TTTCTGGG------TTTATCC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out369   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out370   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out371   CAGTTTAT------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out372   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out373   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out374   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out375   TGTATTAT-------T-TCAGGA-TT----TA-AC----------GGACG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out376   TGGATTTA-------TTTCAGGA-CC----TA-AC----------CGGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out377   AG-ATTTA-------TTTCAGAC-TT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out378   --------------------AGG------ATTTAAC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out379   ----------------------A------TTTAACA--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out380   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out381   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out382   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out383   GT-GTTAT-------T-TCAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out384   GAATTTAT-------TAACAATG-TT----TA-A-----------CCGGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out385   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out386   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out387   TAAA----------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out388   GG-ATTTA-------TTTCAGAA------TTTAATC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out389   -------A-------TTCAGGAT-TT----TTAAC----------CTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out390   AG-GTTTG-------TTTCAGGA-TT-----TAACA--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out391   GA-ATTTA-------TTTCAGGG-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out392   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out393   AG-ATTTA-------TTGCAGGA------TTTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out394   GG-ATTTA-------TTCTAGGT-TT-----AACCG--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out395   GG-ATTTA-------TTCTAGGA-A-----A-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out396   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out397   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out398   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out399   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out400   TGGATTTATT-------TTAGGA-TT----TA-AT----------TTTCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out401   AG-ATTTA-------TTTCAGGA------TTTA-AC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out402   GG-ATTTA-------TTTCAGGA-TT-----TTACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out403   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out404   GA-ATTTA-------TTTCAGTA-CC----T-AATC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out405   TCA-T-TAAT---TAGCCGGCGA-TA----T-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out406   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out407   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out408   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out409   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out410   ---------------------GATTTAA------CC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out411   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out412   CTAAATTT-------ATTTCAGG-AT----TA-A-----------CCGGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out413   TGAATTTATT-------CTAAAA-TT----TA-AC----------CGGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out414   TG-GATTA-------TTCCAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out415   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out416   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out417   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out418   GG-ATTAT-------TT-CAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out419   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out420   GA-ATTTA-------TTTCAAAG------CTTAAAC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out421   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out422   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out423   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out424   CT-CGCAT-------TTTCAGGA-AC----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out425   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out426   -CCGGATT-------ATTTCAGA-GT----TA-A-----------TTGGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out427   TG--GATA-------TTTCATGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out428   GG-TTTAT-------T-TCAGAA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out429   GAA-TTTA-------TTTCAGAA-AC----TA-C-----------CCGGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out430   TT-ATTTA-------TTTCAGAA-TT----T-AATC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out431   GA-ATTTA-------TTTCAGGA-CC----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out432   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out433   TA-ATTTA-------TTTCGGAA------TTTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out434   GAT-TTTC-------TTT-AGTG-TT----TA-AC----------CGACG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out435   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out436   TGAATTTATT-------TTACAA-TT----TA-AC----------CGGCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out437   AGA-TTAG-------TTTCGGAA-TT----TA-AT----------TGTCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out438   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out439   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out440   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out441   GA-ATTTA-------TTTTAGGG-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out442   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out443   AG-ATTAT-------T--TCAAG-AT-----TAACA--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out444   GA-ATTTA-------TTTCAGGA-C-----A-TAAC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out445   TGAATTTA-------TTTTAGGA-TT----AA-CC----------GCG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out446   GG-ATTTA-------TTCCAG-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out447   AT-GATTA-------TTTCAGAA------TTTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out448   GC-ATTTA-------TTTCAGAG------TTTAATT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out449   GG-ATTTA-------ATCCATGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out450   GG-ATTTA-------TTCCAGGG-TT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out451   GG-ATTTA-------TTTCAGGC-TT----T-GACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out452   TA-GATTA-------TTTCAGGA------TTTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out453   GA-ATTTA-------TTCCAGAC-TT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out454   TC-GATTA-------TTTTAAGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out455   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out456   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out457   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out458   GG-ATTTA-------TTTCAGTG-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out459   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out460   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out461   TG-GATTA-------TTCCAGAATTTAA------CC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out462   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out463   TG-AATTT-------ATTTAGGC-TT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out464   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out465   TGAATTTA-------TTTCAAGA-CT----TA-AC----------CGGC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out466   GG-ATTTA-------TTTCAGGG-TT----T-AACA--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out467   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out468   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out469   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out470   -G-GATTT-------TTCCA-------AATTTTAAC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out471   TGGATTTA-------TTTCAGGA-CC----TA-AC---------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out472   TG-GATTA-------TTGCAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out473   AGA-TTTA-------TTTCAGAA-CC----TA-AC----------CGGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out474   ------------------------------TTAATC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out475   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out476   GAA-TTAT-------TCC-AAGA-TT----TA-AC----------CAGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out477   TGGTTTTATT-------TTAG-T-TT----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out478   TAATTTAT-------TTTAGGA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out479   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out480   -G-GTTTA-------TTCTAAGG------TTTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out481   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out482   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out483   GTATTTATT--------TCAGAA-TT----TT-AC----------CGATG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out484   ----ATGG-------TGTCGCAT-TT----TG-C-----------TCGGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out485   AGA-TCTA-------TTTCAGAA-TT----TA-AC----------CGATG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out486   GG-ATTAT-------T-ACAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out487   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out488   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out489   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out490   AG-ATTTA-------TTCCAGAA-TT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out491   GG-GATAA-------TTCTAAGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out492   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out493   ----------------TTTCGAA------ATTTAGA--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out494   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out495   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out496   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out497   GG-ATTAT-------TT-CAGGA-TT-----TAACT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out498   TTTGGATTTATTGTGGTAAGTGA-CA----TA-CG----------CGTCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out499   GG-ATTTT-------T--CCAGG-AT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out500   TGGACTCA-------TTATATAG-GA----AG-GT----------TTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out501   GA-ATTTA-------TTACAGGA------TTTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out502   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out503   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out504   TGAATTTA-------TTTCGGCC-TT-----A-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out505   C-------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out506   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out507   TG-GATTA-------TTTCAGGA-TT-----TAATC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out508   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out509   GA-ATTTA-------TTTCAGGT------TTTA-AT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out510   GA-ATTTA-------TTTCAGTA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out511   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out512   AGGA-TTA-------TTTCATGA-TT----TA-CC----------CG--G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out513   GA-AATTG-------TTCCAGGC-TT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out514   AAT-TTAT-------TTC-AATA-TT----TA-ATCG--ACATTATTTTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out515   GA-ATTAT-------T-TCAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out516   GG-ATTCA-------TTTCAAGA------TTTAACA--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out517   --------------------------------AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out518   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out519   GA-TTTAA-------T-TCAGGA-TT-----TGACCGGCGCTTTGTTTTC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out520   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out521   TGGATTTA-------TTCAGGAT-T-----TA-AC----------TAGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out522   AT-AT-TT-------ATTTGAGG------TTTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out523   GA-ATTTA-------TTTCAGGA-TT-----TAACA--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out524   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out525   TGAATTAT-------TTCAGGAT-T-------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out526   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out527   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out528   AA-ATTTA-------TTTCAAGA-CC----C-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out529   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out530   TGAATTTA-------TTCCAGGC-TT----TA-AT----------TGGCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out531   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out532   T-----GG-------ATTATTAC-AT----TA-AT----------CGGCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out533   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out534   GG--------------------A-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out535   TC-ACATT-------TCCTGGATTTAGGATTTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out536   TGAAGGTG-------ACTTCGTT-AA----TC-TC----------TCAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out537   TGGATTTA-------TTCTAGGA-CC----TA------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out538   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out539   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out540   --A-CATT-------TACCTGCA-TT----TA-AC----------CAACG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out541   GA-CTTTA-------TTTTAAGG------TTTATCT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out542   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out543   ------------------CCATG------ATTTAAC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out544   GT-ATTTA-------TTTCAGGT-TT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out545   GATTTATT-------C--CAGAC-TT----TA-A-----------CCGGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out546   GT-GTTAT-------T--CCAGG-AT-----TTAGC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out547   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out548   TAGATTTA-------TTTCAGAA-AC----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out549   GA-ATTTA-------TTCCAGGA-TT----T-AACT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out550   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out551   AT-TTATT-------TTAGGACC------TATGACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out552   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out553   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out554   TG-GATTA-------TTTCAAGATTTAA------CA--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out555   TGGATTATT--------TCAGAA-TT----TA-AC----------AGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out556   TGGATTAT-------T-TCAAAA-TT----TA-AC----------AGACG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out557   GA-AATT---------TTCAAAA-AC----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out558   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out559   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out560   GAATTTATTT-------CAATTT-AT----CC-GG----------CGATG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out561   GT-ATTTA-------TTTCAAGA-TC----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out562   -----TTA-------TTTCAGGG------CTTAAAC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out563   GG-ATATA-------TTTCAGAA------TTTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out564   CT-CCCTA-------AATTATTT------CAAAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out565   TG-CACTA-------TTTCAAGATTTAA------CC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out566   GG-ATTAT-------T--TAAGG-AT-----TTAAC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out567   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out568   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out569   GG-ATTTA-------TTCTAAGC-TT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out570   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out571   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out572   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out573   GG-ATTTA-------TTCCGGTG------TTTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out574   TTGATTTATT-------TCA------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out575   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out576   ATTTATT--------C--AAGT-----------C-----------TCGGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out577   -----------------------------------C--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out578   -----------------TTTAGA------GTTTATC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out579   TGAA-TTA-------TTTCAGGA-TT----TA-AC----------CGGCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out580   ----------------TCCAAGG------CTTAATC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out581   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out582   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out583   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out584   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out585   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out586   GG-ATT---------TTGTAGGA------TTTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out587   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out588   TG-GATTA-------TTCCAAAATTAA-------CC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out589   GGA-TTAT-------TC--CAAA-AT----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out590   GG-ATTAT-------TT-CAGAA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out591   GA-TTATT---------CCAAGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out592   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out593   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out594   TGAATTTAATCGGCGCTA--------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out595   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out596   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out597   GG-ATTTA-------TTTCAGGA-CC----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out598   GG-ATTTA-------TTCCAGGA-CC----T-AACT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out599   GG-ATTTA-------TTTCAGGA-TT-----TAGCC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out600   TG-AATTA-------TTA------CAGGATTTTACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out601   TC-AATTA-------TTTCAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out602   GA-ATTTA-------TTTCAAGA-CC----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out603   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out604   -------A-------TGATTTTA------GTGTTTA--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out605   GA-TTTAA-------T-CTAGGA-TT-----TAACTGACGCCTTGTTTTC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out606   AG-ATTTA-------ACCGG------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out607   GT-ATTAT-------TT-CAGGA-TT-----TAATC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out608   GA-ATTTA-------TCACAAGA------TTTTACT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out609   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out610   CT-TGACA-------TGGACGAT------CAGATTT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out611   GG-ATTTA-------TTCCAGGG-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out612   TGGATTTATT-------TTAGTA-TT----TA-AC----------CGACG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out613   GA-ATTTA-------TTCCAGTA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out614   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out615   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out616   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out617   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out618   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out619   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out620   GA-ATTAT-------T-CTAGGA-TT-----TAACCGGCGCTATTCTTTC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out621   TG-GATTA-------TTCCAGGATTTAA------CC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out622   --GACTTGGC-------TTGGAT-GC----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out623   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out624   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out625   TG-ATTTA-------TTTCAGTA------TTTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out626   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out627   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out628   AG-ATTTA-------TTCTAGTG------TTTAATT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out629   TATCT-T------TATTTGCATT-TA----AT-TT----------ATTCC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out630   TAGA-TTA-------TTTCAGAA-TT----TA-AC----------TGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out631   TGAATTTA-------TTCCAGGG-TT----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out632   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out633   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out634   -----------------------------------C--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out635   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out636   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out637   -----------------------------TTTA-TC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out638   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out639   -------G-------TGCTCACA---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out640   TGGGT---------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out641   GG-GTTAT-------TT-CAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out642   GG-ATTAT-------T-CCAGGA-AT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out643   GC------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out644   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out645   TT-ATTTA-------TTTCAGGT------TGTAATC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out646   TG-AATTA-------TTTCAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out647   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out648   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out649   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out650   GGATTTATT--------TCAGGA-AT----TA-AC----------CGGCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out651   TAGA-TTA-------TTGTAGGA-TT----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out652   ---------------TGCTCACA-TT-----TATCC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out653   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out654   TTGATTTATT-------TCGGAG-TT----TA-AC----------CGACG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out655   GC-TTGCA-------TTCCAGCG------TTTAAGC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out656   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out657   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out658   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out659   TGGA-TTA-------TTTCAGAA-TT----TA-AC----------CGGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out660   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out661   TGA-TTTA-------TTTCACCA-CC----TA-A-----------CCGGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out662   TGGATTTA-------TTTAAAAA-TT----TG-AC----------CGACG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out663   GA-TTTTT-------TCTAGGAT------TTTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out664   --------------------------------ATCC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out665   GA-GCTTA-------TTTCAATG------TTTATCC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out666   TT-GATTA-------TTTTATAA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out667   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out668   TTCATTTA-------TTTTCGGA------TTTAACT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out669   ATTTCT--------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out670   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out671   GG-ATTTA-------ATCCAGTA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out672   GG-ATTAT-------T-CCAGAA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out673   AC-TTGGC-------ATATGTGT------TCTCATT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out674   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out675   G-TATTTA-------TTTCAGAA-TT----TA-A-----------TCGGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out676   --------------------CAC-GT----TA-AC----------CGATG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out677   TA-GATTT-------ATTCAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out678   TGAA-TTA-------TTTCAAGA-TT----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out679   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out680   TGTATCTA-------TTCCGATG-TT----TA-AC----------C----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out681   TGTATTTA-------TTTCAGAT-TT----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out682   AA-ATTAT-------T-GCAAGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out683   AGCCTTCT-------TTGGATCA-TA----GG------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out684   TG------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out685   GGGATTTATT----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out686   GC-ATTTA-------TTTCAGGT------CTTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out687   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out688   ------------------CTGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out689   TGGATTTATT-------TCAGAA-TT----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out690   GA----AT-------TTAGACCA-GG----TA-AC----------TGGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out691   GG-ATTTA-------TTCTAGTC-TT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out692   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out693   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out694   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out695   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out696   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out697   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out698   AA--TTTA-------TTTCAGGA-CC----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out699   AA-TTTAT--------TCCAGGG-G-----TTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out700   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out701   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out702   GA-ATTTA-------TTCCAGAA-TT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out703   CG-AATTA-------TTGCAGGT------TTAGACA--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out704   GG-ATTTA-------TTCTAGGG-TT-----TAATC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out705   ----------------------T------TGTGGTG--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out706   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out707   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out708   GG-ATTTA-------TTTCAGAA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out709   TG-ATTTA-------TTTCAAGA-TT----T-AATC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out710   CTAAATTA-------TTCCAGAA-T-------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out711   TGGATTTA-------TTTTAGGC-TT----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out712   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out713   TG-AATTT-------ATTTCAAA------ACTAATC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out714   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out715   TGGA-TTA-------TTTCAGGA-TT----TA-AC----------TGACG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out716   TG-GATTA-------TTCTAGGA-TT-----GAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out717   TAG-----------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out718   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out719   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out720   TGGATTTA-------TTCCAGGC-TT----TA-AT----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out721   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out722   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out723   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out724   TGGAT-------------------------TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out725   GG-ATTTA-------TTCCCAGA-AC----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out726   GA-ATTTA-------T-TTCAGG-CT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out727   TA-GATTT-------ATTCCAGG-AT----T-TAAC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out728   TGGATTTA-------TTCTAGGA-GC----TA-AC----------GGTGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out729   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out730   GG-ATTTA-------TTCCAGGC-------TTTAAC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out731   TT-TCCTG-------GATTTATT-CC----A-GGAC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out732   GC-ATTTA-------GTCCAAGA------CTTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out733   ------CTGGC---------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out734   GG-ATTTA-------TTTCAGAT-TT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out735   TGGA-TTA-------TTGCAGAA-TT----TA-AT----------CG--G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out736   ----CTGA-------TTTTAGGG------TTTTACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out737   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out738   TGGATTTATT-------TCAGGT-TT----AA-CC----------GTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out739   TTG-ATTA-------TTTTAGAA-TT----TA-AA----------TTCAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out740   ----------------------A------TTTAATG--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out741   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out742   --------------------ACA-TT----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out743   TG-GGTTA-------TTCCAGGATTTAA------CC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out744   TT-GAATT-------ATTTT----AG-GATTTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out745   GG-ATTTA-------TTTCAGTA------TTTAATT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out746   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out747   TTCTTGGA-------CTTGACAT-A-----TG-GG----------TGTCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out748   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out749   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out750   -------------------------------TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out751   TT-GATTA-------TTTCAGGATTTAA------CT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out752   TG-AATTT-------ATTTCAAG-TT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out753   GGATTTATT--------TCAAGA-TT----GA-AC----------TTACG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out754   GAT-TTTA-------T--------------------T--ACATGATTTAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out755   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out756   GG-ATTTA-------TTACAGGG-TT----T-AATC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out757   GG-ATTAT-------T-CCAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out758   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out759   GG-ATTAT-------T-CCATGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out760   GG-ATTAT-------TT-CAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out761   AATTTATT-------TCAGGGGT-TT----TA-A-----------CCGAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out762   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out763   -GA-TTTA-------TTTTAAGA-TC----TA-A-----------CCGGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out764   TA-ATTAA-------TTTTAAGA-TT-----TAGCC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out765   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out766   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out767   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out768   GA-ATTTA-------TTCTAGAC-TT----T-AACT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out769   TTCCTGAA-------TTA--------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out770   GG-ATTTA-------TTGCAGGA-AC----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out771   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out772   TAGATTTA-------TTTCAGAC-TT----TA-AC----------CCACG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out773   TGGATTAT-------TTTA-------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out774   GTATTTAT-------T-TCAGAA-CT----TC-AT----------C----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out775   TGAATTTA-------TTTTAGAG-TT----TA-AT----------CGGCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out776   GG-ATTTA-------TTCCAGTA-AC----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out777   TT-TCCTA-------GATTATTC------CAAAATC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out778   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out779   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out780   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out781   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out782   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out783   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out784   A--ATTAA-------ATTCATGA-TT-----TAACT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out785   AATTTATT-------T--------------TA-A-----------CCAGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out786   G--GATCA-------TTTCAGGA-TT-----TAGTC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out787   TT-GATTA-------TTTCAGGATTTAA------CG--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out788   TGGATTTA-------TTTCGGAA-TT----TA-AC----------TGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out789   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out790   GG-AT--------------------------TTAAC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out791   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out792   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out793   GA-C----------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out794   --------------------GGA------CCTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out795   TA-GATTA-------TTTTAGGA-TT-----TAATC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out796   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out797   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out798   GA-ATTTA-------TTCCAGAC-TT----A-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out799   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out800   GG-ATTAT-------T-CCAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out801   AG-ATTTA-------TTTCAGGA------TTTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out802   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out803   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out804   ------------------CAGGA------TTTA-AC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out805   GA-ATTTA-------TTCTAAGT-TT-----TGGCC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out806   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out807   GG-TTTAT-------TT-CAGGA-TT-----AAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out808   G--GATTA-------TTTCAGAA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out809   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out810   GA-TTATT-------G--CAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out811   TG-GATTA-------TTTCAGGA------TTTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out812   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out813   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out814   GC-GTTTA-------TTTTACGA------TTTA-----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out815   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out816   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out817   TGGATTTA-------TTTTAGGG-TT----TA-GC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out818   GC-ATTTA-------TTTCAGAA------TTTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out819   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out820   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out821   CC-AGCCC-------ACTCAGAA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out822   AG-ATTAT-------T-ACAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out823   GG-ATTTA-------TTTCAGAA-AC----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out824   GA-TTTAT-------TTTTAGAC-TT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out825   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out826   TGA-ATTA-------TTTCAAGA-TT----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out827   GG-ATTAT-------TCCAGG-A-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out828   AG-ATTTA-------TTTTAGGG-TT----T-AATC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out829   ------TA-------TTTCAAGT------TTTA-AT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out830   GA-ATTTA-------TTTCAGAA------CCTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out831   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out832   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out833   GG-ATTTA-------TTCCAGGG------ATTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out834   TGGATTAT-------TCCAGG-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out835   T--CACAT-------CTT------CGTCACCAGGAT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out836   TGGATTAT------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out837   GG-ATTTA-------TTTCAGGATTTAA------CC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out838   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out839   TG-AATTA-------TTTTAGGA-TT------TAAT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out840   GA-ATTTA-------TTTCAGAA------ACTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out841   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out842   GC-ATTTA-------TTTCAGGG-TT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out843   TAAGTTTA-------TTTCAGAT-TT----TT-TT----------TCTT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out844   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out845   TAATTTAT-------T-TCAGAA-TT----TA-TT----------AAACC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out846   CA-TTTAA-------T-CTAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out847   TGAATTTA-------TTTTAGAA-TT----TA-A----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out848   GA-ATTAT-------T----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out849   GA-ATTTA-------TTTCAGAA-CC----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out850   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out851   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out852   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out853   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out854   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out855   TGAATTTA-------TTTTAGGA-TC----TA-AC----------CATCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out856   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out857   TA----------------CGTGA-TT----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out858   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out859   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out860   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out861   TGAATTTA-------TTACATAA-AC----TA-AC----------CG---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out862   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out863   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out864   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out865   TA-GATTA-------ATTCAAGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out866   GGA-TTTA-------TTCCAGAA-AC----TA-AC----------ATGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out867   TGGATTTA-------TTCTACAA-TT----CA-AC----------GAAT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out868   TGGATTTATT-------CTAAAA---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out869   GT-ACTAA-------ACTTTACG------TGGG--C--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out870   TGAATTTA-------TTTCAAAA-TT----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out871   GA-ATTTA-------TTCCAGAG-TT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out872   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out873   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out874   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out875   GG-ATTTA-------TTGTGGGA-TT----T-AACT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out876   GG-ATATA-------TTCCAAGC-TT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out877   GG-ATTTA-------AATCCAGT-GA----GTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out878   GAATT---------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out879   GG-ATTTC-------ATTAGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out880   TGGATTTA-------ATTCAAGA-TT----TA-GT----------TGGGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out881   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out882   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out883   ------------------------------GTGGTT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out884   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out885   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out886   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out887   GTA-TTTA-------TTCCAGAG-TT----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out888   TGGA-TTA-------TTTCAAGA-TT----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out889   TG-AATTT-------ATTGCAGG-GT----T-TAAC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out890   TGGATTTATT-------TTAGTG-TT----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out891   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out892   GAA-TTTA-------TTTCAGGA-CC----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out893   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out894   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out895   GAA-TTTA-------TTCTAAGA-TT----TA-AT----------CGGCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out896   GAA-TTAT-------TTCAGAAT-TT----AA-TC----------TAGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out897   -----------------------------TTTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out898   -T-CACAT-------TACTCGAA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out899   GGA-TTAA-------ATCCAGAA-TT----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out900   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out901   GG-ATTCA-------ATCCAGGA------CCTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out902   GAA-TTTA-------TTTCGGAA-TT----TA-AT----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out903   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out904   GC-TCACA-------TTTTCTAG-AT-----TTATT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out905   GAA--TTA-------TTACTGGG-TT----TA-A-----------CAGAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out906   GG-ATTCA-------TTCCAGGGTTTAA------CC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out907   TGGATTTATT-------TCAGAT-TT----TA-AC----------ACTTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out908   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out909   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out910   ATTCTTTGGTAGGTGTCGTACCC-AT----CA-A----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out911   GG-ATTTA-------CTTTAG-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out912   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out913   TCGTTGTTTT-------TTTTAG-TG----AA-AG----------TGACG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out914   GA-TTTAT-------T-TCAGAA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out915   GA-ATTTA-------TTTCAGGGTTTAA------CC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out916   GG-ATTTA-------TTTCAGGA-CC----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out917   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out918   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out919   GA-ATTTA-------TTCAGGTT------TTAACAG--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out920   AA-ATTTA-------TTCCAAGA-TC----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out921   -----TTA-------TTTTACGA------TTTAAAT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out922   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out923   TGGA-TTA-------TTTCAAGA-TT----TA-AT----------CGACG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out924   TGGATTTA-------TTTCAGGA-AC----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out925   TG-GATTA-------TTCCAAAATTT-A------AC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out926   -TGCACGA-------TTTCAATG-TT----TA-A-----------CCGGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out927   GG-ATTTA-------TTTCAAAA-CA----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out928   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out929   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out930   GA-ATTTA-------TTCCAGGC-TT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out931   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out932   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out933   GG-ATTTA-------TTCTAGGC-TT----T-CACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out934   TT-GATTA-------TTTTAGGA-TT-----TAACG--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out935   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out936   GT-ATTTA-------TTCCGGGG------TTTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out937   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out938   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out939   AT-TTTTT-------GATTTAATTCAGGATTTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out940   GA-ATTTA-------TTCCAAAA-TT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out941   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out942   GG-ATTTA-------TTTCAGGG-TT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out943   ---GTTTA-------AGT------CA------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out944   GGA-TTTA-------TTCCAAGA-CC----TA-AC----------CAACT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out945   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out946   TGAA-TTA-------TTACAGGA-TT----TA-AC----------CGGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out947   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out948   GTGACTTC-------GTCAATCT-TA----AT-CT----------CAAG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out949   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out950   G--AATTT-------AGTCCAGA-TT-----TGTCC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out951   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out952   GA-TTTAT-------T-TCAGGA-TT-----TAACCAGCGCTATTCTTTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out953   TG-AATTA-------TTTCAGGA-TT-----TATCC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out954   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out955   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out956   TGAATTTA-------TTCCAGG----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out957   GG-ATTTA-------TTTCCGGT------GTTTAAT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out958   GGA-CTAT-------TCC-AAGA-TT----TA-AC----------CGGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out959   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out960   ---GGTTA-------TTCTAGAT------TTTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out961   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out962   GG-ATTTA-------TTTCAGAA------TTTATCC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out963   GG-ATTTA-------TTCTAGGG-CT----TAAACA--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out964   TA-ACTCA-------GCT------GGTCTGTTTCTT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out965   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out966   ---------------------------------ACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out967   TGAA-TTA-------TTTCAGGA-TT----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out968   TGG-ATTA-------TTTCAGAA-TT----TA-AC----------CGGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out969   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out970   TGGG-TTA-------TTCCAGAA-TT----AA-AC----------CAGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out971   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out972   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out973   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out974   TG-GATTA-------TTTCAGCA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out975   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out976   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out977   GA-TTTAA-------C-CAAAAA------TAACCAA--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out978   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out979   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out980   AG-ATTTA-------TTCCAGGC-TT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out981   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out982   TGA-ATTA-------TTCCAGGA-TA----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out983   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out984   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out985   TAAATTAT-------TTCACAAT-T-----TA------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out986   GG-ATTTA-------TTCCGGGA-AC----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out987   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out988   GG-ATTAA-------TC-CAAGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out989   GG-ATTTA-------TTCTAGGA------TTTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out990   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out991   GG-AGTGA-------CGT-ATCA------GTTAACT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out992   GAA-TTTA-------TTTCAGAT-TT----TA-AC----------TAGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out993   GA-ATTTA-------TTTCAAGA-AC----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out994   GG-ATTTA-------TTTCAGGA-CC----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out995   GC-AT-TT-------ATTCCCGG------AACTAAC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out996   GA-ATTTA-------TTCCAGAA-CC----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out997   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out998   GA-GTTAT-------TT-CAGGA-TT-----TAACT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out999   GG-ATTTA-------TTGCAGGA------CCTAA-C--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1000  GG-ATTAT-------T-TCAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1001  TG-GATTA-------TTTTAGAA------TTTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1002  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1003  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1004  TAGATTTATT-------T-CAGA-TT----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1005  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1006  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1007  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1008  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1009  AA-ATTCA-------TTCTAGAA------TTA------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1010  GG-ATTTA-------TTTCAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1011  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1012  -------T-------CAAAGGGA------GTGACCT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1013  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1014  GG-A---------------TTTA------TCTCACT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1015  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1016  TGGATTTA-------TTTTAGGA-TT----TA-AC----------CGGCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1017  -GGATTTA-------TTTCAGAA-TT----TA-TC----------CGGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1018  AAA-TTTA-------TTACAAGA-TT----TA-AC----------CGGCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1019  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1020  AG-GTTCA-------AATTCTTAACTTGATATGGAT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1021  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1022  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1023  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1024  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1025  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1026  AAAATTAA-------TTCAAGAT-T-----TA-AC----------CGG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1027  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1028  GA-ATTTA-------TTTTAGGG------TTTAAC---------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1029  AATTTATT-------T-C-AGAA-TT----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1030  GA-ATTTA-------TTCAAGGATTTAA------CC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1031  GA-ATTTA-------TTTTTGTA-CT----T-CACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1032  AG-ATTTA-------TTACGAGG-CT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1033  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1034  TG-GATTA-------TTCCAGGA-TG-ATTTAACCG--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1035  GG-ATTAT-------TC-CAGTA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1036  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1037  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1038  GA-ATTTA-------TTCCAGGA-AC----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1039  GATTTATT-------T--CAGAC-TT----TA-A-----------CCTGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1040  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1041  GGA-TTAT-------TCC-AGAA-TT----TA-AC----------CAACG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1042  -------------------------------GGGTG--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1043  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1044  GG-ATTAT-------TC-CAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1045  GA-TTTAA-------T-CCAGGA-TT-----TAACATGCGCTTTACTTTC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1046  CGGA-TTA-------TTTCAGGA-TT----TA-AC----------CGACG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1047  TGGATTTA-------TTTCAGGG-TT----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1048  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1049  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1050  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1051  AA-ATTTA-------TTTTAGAA------TTTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1052  TGGATT--------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1053  TTAACCAA-------TACTTTAC-TT----TC-AG----------TGGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1054  TGT-ATTA-------TTTCAGAA-TT----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1055  TGTATTTA-------TTTCAGTA-TT----TA-AC----------TGGTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1056  AT-GATTA-------TTTCAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1057  CACATCACTA-----------GG-TT----TA-AC----------C----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1058  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1059  TG-CTCAA-------CTTCTAAA------CTTAACA--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1060  TT-CAGTA-------TTTCA-GG------GTTAATC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1061  GC-ATTTA-------TTTCAGGA------CATAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1062  TGA-TTAA-------ATTCAGGA-TT----TA-AC----------CGGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1063  GG-ATTTA-------ACCGGT-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1064  GG-ATTTA-------TTTCAAGA-CC----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1065  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1066  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1067  GAA-CTAT-------TTC-AGGA-TT----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1068  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1069  GG-GTTAT-------T-TTAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1070  ----ATTA-------TTTTAGAA------TTTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1071  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1072  G--GATTA-------TTTCAAGA-TT-----TAACT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1073  -----TTA-------TTTTAGGT------TTTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1074  GG-ATTTA-------TTTTAGGA-TT-----TAATC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1075  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1076  GG-ATTTA-------TTTTAGGA------CCTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1077  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1078  GG-ATTTA-------TTTTATGA-AC----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1079  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1080  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1081  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1082  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1083  TT-GATTT-------ATTTCATG-AT-----TTAAC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1084  TGAATTATT--------TCAGAA-TT----TA-AC----------TGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1085  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1086  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1087  GA-ATTTG-------TTTCGGTG------TTTATAA--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1088  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1089  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1090  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1091  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1092  ------------------------CAAGACTTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1093  GA-ATCTA-------TTTCAATA------TTTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1094  GAA-TTAT-------TTT-AAGA-TT----TA-AC----------CGGCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1095  AT-ATTTA-------T----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1096  GG-ATTTA-------TTGCAGAA------TTTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1097  TGGAATAG-------TCTAGGGT-TT----AA-CT----------GGCA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1098  GA-ATTTA-------TTTCAGAA-CC----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1099  --------------------GGATTTAA------CC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1100  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1101  GG-ATTTA-------TTACAAGA-AC----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1102  TG-AATTA-------TTTCAGAATTTAA------CC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1103  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1104  -----CTG-------ACC-AGGA-TT----TA-AG----------CGACA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1105  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1106  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1107  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1108  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1109  AA-ATTAA-------TTACAAGA-TT----T-AACT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1110  TGAATTAT-------TCCAGGAT-T-------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1111  -----------------AGATGA-CC----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1112  TGGATTTA-------TTCTAGGA-CA----TA-AC----------CGGCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1113  GA-ATTAC-------T-TCAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1114  GA-ATTAT-------TT-TAGGA-TT-----TAACT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1115  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1116  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1117  TCGATTAT-------TTTAGGAT-T-----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1118  TG-GATTA-------TTCCAGGA-TT-----TAACT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1119  GG-ATTTA-------ATCCATGA-TT-----TCACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1120  AA--TTTA-------TTTCATGG-C-----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1121  TG------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1122  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1123  GG-ATTAT-------T-ACAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1124  GG-ATTTA-------TTCCAAGA-AC----T-AAAC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1125  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1126  CT-ATTTA-------TTTCATGA-TT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1127  TGGATTATT--------CCAGAA-TT----AA-CC-----------GGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1128  TGATTTTA-------TTTCAGAA-CC----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1129  GG-ATTTA-------T-TTGAGG-GT----T-ACCC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1130  ATTGGTTCGTCAATATTTCAAGA-TC----TG-CC----------GGCTC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1131  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1132  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1133  GAATTTAAT--------ACAAGA-TT----TA-AC----------CACCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1134  ------TA-------TTACAGAA-TT----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1135  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1136  GT-ATTTA-------TTTTAGGT------ATTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1137  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1138  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1139  GAT-TTTA-------ATTCAGGA-TT----TA-AC----------CGACG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1140  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1141  TAGATTTATT-------TTAGGT-TT----TA-AC----------C----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1142  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1143  ---------------TTTCAGAC------GTTCATA--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1144  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1145  GGATTTATT--------CCGGAA-TT----TA-AC----------CTGCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1146  GG-ATTTA-------TTCCAGTA-TT-----TGACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1147  GG-ATTAT-------T-TTAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1148  TG-ATTTA-------TTCCAGGC-TT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1149  GA-ATTAT-------T-CCAAGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1150  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1151  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1152  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1153  TGAATTAT-------T-T-CAGG-AT----TT-AT----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1154  TG-GATTA-------TTGCATAA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1155  ------GGATT--TATTCTAAGA-TT----TT-TG----------TGGTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1156  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1157  TATTTAT--------T-CCAG-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1158  TC--------------TCAACGA-GA----CA-TT----------TGCGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1159  GG-ATTGA-------TTATATGA------CCTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1160  TGGATTTA-------TTCCAGGA-CC----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1161  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1162  GGA-----------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1163  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1164  GA-ATTTA-------TTTCAGGC-TT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1165  AA-AAAAA-------ATTCAGGG------TTTTACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1166  GG-ATTTA-------TTCTAGGA-CC----T--AAC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1167  TGTGTCTG-------TTATGTCA-GG----AT-TT----------AACT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1168  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1169  ------TGATAAGTGACATACGC-GT----TA-AC----------AGCGA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1170  TGAATT--------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1171  TAG-ATTA-------TTTCAGAA-TT----TA-AT----------TGGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1172  GG-ATTTA-------TTT------CAAGATTTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1173  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1174  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1175  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1176  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1177  TT-GTATA-------CTTTA-GG------GTTTAAC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1178  G--GATTA-------TTGCAGGA-TT-----TAGCC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1179  GATTTACT-------C--CAGGC-TT----TA-A-----------CCG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1180  GG-ATTTA-------TTTCAGAATTT------AGCT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1181  TTCAGGATTT----AATC---GG-TG----AA-CT----------GTCTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1182  GA-T--TA-------TTTCAGTA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1183  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1184  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1185  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1186  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1187  GG-ATTTA-------TTCCAGGG-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1188  CT-CTTTG-------GTGGTCTGGTTCCTTGTGGTG--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1189  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1190  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1191  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1192  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1193  TGAATTTA-------TTTCAGGA-AC----TA-AC----------C----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1194  GA-ATTAT-------TT-CAGGA-TT-----TAATC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1195  GG-AACCA-------GCCCCACC-CG----G-TTCA--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1196  -----CTC-------TGGCCACTATAGGATTTAATC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1197  TGAATT--------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1198  AA-TAATT-------TTTTCA------------G-C--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1199  TG-AATTC-------TTTCAGGT-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1200  GGA-TTTA-------TTCCAGAG-TT----TA-AC----------CGACA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1201  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1202  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1203  GTG-AATT-------TATTAGGA-TT----TA-AC----------CGGCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1204  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1205  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1206  AAC-CATC-------AACAGCGA-GA----CG-CT----------CGTGA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1207  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1208  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1209  TAGATTTA-------TTTCAGAG--------T-TT----------ATCC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1210  AA-ATTTA-------TTTCAAAA-TT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1211  TGGATTTATT-------ACAGAA-TT----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1212  GG-ATTTA-------TTTTTTGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1213  AA-ATTTA-------TTTCAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1214  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1215  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1216  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1217  TAGATTTA-------TTCTAGT--TT----CA-AC----------CGGCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1218  GG-ATTTT-------TTGTTCAA------GGAATCG--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1219  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1220  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1221  TA-GATTA-------TTTCAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1222  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1223  GA-TTTAA-------T-CCAAAA-TT-----TAACCGGCGCTTTGCTTTC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1224  GA-ATTTA-------TTTTAAGA-CC----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1225  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1226  GA-ATTTA-------TTCCAGAG-TT----T-GGCC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1227  AG-ATTTA-------TTTCAAGA------TTTATCC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1228  -----TTA-------TTTCAAGA------TTTCTCC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1229  TGGATTTA-------TTCCACGG-TT----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1230  GA-ATTTA-------TTTCGGGA-CT----T-AACT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1231  GG-ATTTA-------TTTCAGAA------TTTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1232  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1233  TGAATTAC-------TTTAGAAT-T-----TA-GC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1234  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1235  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1236  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1237  TGGA-TTA-------TTTCAGGA-TT----TA-AT----------CGGCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1238  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1239  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1240  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1241  TG-CATTA-------TTTTAGTA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1242  GG-ATT-T-------TTCCAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1243  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1244  AT-ATAGA-------TGCTCATA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1245  GGA-TTAT-------TT--TAGA-TT----TA-A-----------CCGCC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1246  GG-ATATT-------TTTCAGGA------TTGAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1247  GG-ATTTA-------TTTCAGGA-CC----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1248  -------------------TGAA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1249  -----TTA-------TACCAAGA------TTTAATC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1250  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1251  TGGATTTA-------TTTCAGGA-TC----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1252  TGAATTTA-------TTC--------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1253  AG-ATTTA-------TTCCATGA-TT-----TAAGT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1254  AG-ATTTA-------TTCCATGA-TT-----TAAGT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1255  CTAAA---------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1256  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1257  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1258  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1259  GA-TTTAA-------T-TCAGAA-TT-----TAACCGGCGCTTTGCTTTC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1260  CTGAAAGC-------GACGAACC-T-------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1261  TA-GATTA-------TTTCAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1262  -----------------------------------C--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1263  GA-ATTTA-------TTTCAGAC------TTTAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1264  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1265  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1266  TGGATTAT-------TCCAG------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1267  TGGA------------TTACTCC-AA----GA-TT----------GGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1268  GG-ATTTA-------TTCCAAGC-TT----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1269  GA-ATTTA-------TTTCAGAA------CCTA-AC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1270  GG-ATTAT-------TT-CAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1271  AG-ATTTA-------TTTCAGGA-TA----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1272  TGAGTTTA-------TT---------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1273  ---ATTTA-------ATTGCCAT------TAT------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1274  GG-ATTTA-------TTTCAGGA-TT-----TAACT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1275  TGAATTATTAT--TTCACGATAA-TT----TA-AC----------TGATG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1276  GA-ATTAT-------TCCAGGAT-T------TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1277  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1278  TGAATTTATT-------TTAGAA-TT----TG-AC----------CGACG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1279  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1280  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1281  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1282  T--AGATT-------ATT------CCAGGATTTAAC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1283  GAA-TTTA-------TTTTAGAA-TT----TA-AC----------CGGCC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1284  CA-CATTT-------TTCATGAT------TTAATCG--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1285  GA-ATTTA-------TTCTAAGA-CC----T-AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1286  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1287  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1288  TG-AATTA-------TTTTAGAA-TT-----TAGCC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1289  TTGATTAT-------TTCAGGA--T-------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1290  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1291  TTGA-TTA-------TTTCAGGA-TT----TA-AC----------CGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1292  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1293  TG-CATTA-------TTTCAGAATT------TAAGC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1294  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1295  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1296  TG-GATTA-------TTTCAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1297  TG-AATTA-------TTTCAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1298  --------------------------------AACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1299  -------------------AGAG------TTGAATC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1300  TG-AATTA-------TTCAGGATTTAACTGGCACTA--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1301  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1302  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1303  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1304  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1305  GG-ATTGA-------TTCCAGGC-TT----T-ACAT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1306  TGGA-TTA-------TTTCGGAA-TT----TA-AC----------CGGCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1307  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1308  TG-AATTA-------TTTCAGGA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1309  GG-ATTCA-------TTTCAGGG------TTCAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1310  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1311  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1312  TG-AATTA-------TTCCAGGATTT-----TAACT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1313  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1314  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1315  CGAATTTA-------TTGTAGGT-TT----TA-AC----------CGGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1316  TT-GGATA-------TTTCAGAA-TT-----TAACC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1317  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1318  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1319  GA-ATT-T-------ATTTCAGA------ATTTAAT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1320  TGGA-TTA-------TTTCAGGA-TT----TA-AT----------TGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1321  AG-ATTTA-------TTTCAGAA------CTTATCC--------------

GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out0     ---GACGTT-CT--GTTT-TC---GGTGAG---AGTGACG-TAC------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1     ----------------TT-TC---AGTGGT---AGACAAT-GTACC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out2     -----------------------------------GTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out3     --TTGT---------ACT-TT---CAG---------TGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out4     ---GACGCT-AT--TCTT-TC---CGTGTT---AT----G----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out5     --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out6     ---GGCGTT-GT--CTTT--T--TAGTGG----GAGTGCC-GTATC-TGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out7     -CTATT---------TTT-TC---ATTGGT---AGGTGAC-GTACC-AGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out8     ---GGCA-TTGT--GTTT-TCA----GTGG---GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out9     -CTACT---------ATT-TT---AGTGGT---AGGTGAC-GTACT-GAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out10    ---GGCG-TTGT--GTTT-TCA----GTGG---AAATGAC-GTACC-AGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out11    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out12    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out13    ---GACGCTA-T--CTTT-TCA---GTGGT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out14    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out15    -CTATT--------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out16    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out17    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out18    ---CGGGGG--T--GTGT-AG------TTG----ACGTA----TCA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out19    -TTGTC--------TTTT-CA---GT-GGT---AGTGACG-TGACA-GTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out20    ---GGTG-TTGT--GCTT-TCA----GTGG---GAGTGAC-GTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out21    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out22    ---GACGCTA-T--TCTT----TCAGTGGT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out23    ---GACGCTA-T--TCTC-TCA---C------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out24    ---GGCGCTA-T--TCTT----TCAATGGT---AGGTAAC-ATACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out25    -TTATT---------ATT-TT---AATGAT---AGGTGAC-TTA------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out26    ---CGCG-TTGT--GCTT-TCA----GTGG---GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out27    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out28    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out29    ---GGCG-TTGT--GCTT-TCA----GTGT---GAGTGAC-GTACT-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out30    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out31    ------ACC-GG--TGTT-AT--TCTCGT----AGGTGAC-GCACC-TGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out32    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out33    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out34    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out35    ---------------------------------AGTTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out36    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out37    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out38    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out39    -----------------------------------TAGGT-GGTGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out40    ---TACGCTA-T--TTTT-TCA---GTGGT---AGGTGCG-TATCC-GTC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out41    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out42    --TTGT---------GCT-TT---TAGTGG---GAGTGGC-ATAAC-AGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out43    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out44    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out45    ---GGCGCTA-T--CCTT----TCAGTGGT---AGGTGAC-GTACC-CTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out46    ---GGCGTT-GT--GCTT--T--CAGTGG----GAGTGAC-GTACC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out47    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out48    ---GGCGCTA-T--TCTT-TCA---GTGGT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out49    ---GGCGCTA-T--TTTT-TTA---GTGGT---ACGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out50    ---GGCACT-AT--TCTT-TT--AGTGGT----AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out51    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out52    ---TGAAAT-TAGCTCAT-CC---ATAGTC---A----GG-TTCAA-GTC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out53    ---GGCG-TTGA--GTTT-TCA----ACGG---GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out54    ---GGCA-TTGT--GTTT-TCA----GCGG---GAGTGGC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out55    ---GGCG-TTAT--GCTT-TCA----GTGG---GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out56    -TT-----------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out57    ---GGCGCT-TT--GCTT-TC--AATGGT----AGGTGAC-GTAAC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out58    ---GGCATT-GT--TTTT-TC---CGTGGG---AGT-GAT-GTACC-CGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out59    ---GGCGCT-AT--TCTT-TC---AGTGAC---AGATGAC-GTGTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out60    ---GCCGCTA-T--TCTT----TCAGTGGT---AGGTGGC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out61    ---TGGCGT-TG--TGTT-TT---TAGTGG---GAGTGAC-GTACC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out62    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out63    -TTGTT---------TTT-TG---GGTGGG---AGTGATG-TACCC-GTC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out64    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out65    ---GGG----AT--GTTT-TT--CAGTGA----TAGGTGA-CGTAT-CCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out66    ---GGTG-TTGT--GTTC-TCA----GTGG---GCGTGAC-ATACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out67    ---GGCGTT-GT--GCTT--T--CAGTGG----GAGTAAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out68    --TTAT---------GCT-TT---CAGTGG---GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out69    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out70    ---------------------------------------------C-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out71    ---GATAAT-TT--TCTT-TC---AAAGAT---AGGCGAC-TTAA-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out72    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out73    -----------T--TCTT-TC---AATGCT---AAGTGAC-GTATG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out74    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out75    CGGCGGGTGA----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out76    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out77    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out78    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out79    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out80    ---GGCG-TTGT--GCTC-TCA----TTGA---GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out81    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out82    -CTATT---------CTT-TC---AGTATA---GGCATCG-TGACT-TTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out83    -CTATT---------TTT-TC---AGTGAT--------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out84    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out85    -------------------------------------GAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out86    ---CGGTGT-TG--TGCT-TT---CTGTGG---GAGTGAC-GTACC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out87    ---GGTG-TTGT--GCTT-CAG----T-GG---GAGTGAC-GTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out88    ---GGCG-TTGT--GCTT-TCA----GTGG---GAGTGAT-GTACC-CA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out89    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out90    ----------TT--CTTT-CC---ATGGTA---GGTGACG-TACCC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out91    -------------------------------------------------T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out92    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out93    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out94    --------T-AT--ACTT-CT---AGTTGC---AGACGAT-GTAC-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out95    ---AGCA-TTGT--GCTT-TCA----GTGA---GAGTGAT-GTACC-TAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out96    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out97    ---GAACAA-TA--CTCT-TT---TGGGTA-----GATG----AC-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out98    -CTATT---------CTT-TC---AATGGT---AGGTGAC-GTATC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out99    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out100   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out101   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out102   ---GCCG-TTGT--GCTT-TTA----GTGG---GAGTGAC-GTACC-CCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out103   ---GGCGCTA-T--GCTT-TGT----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out104   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out105   ---GCTGCTA-T--TCTT----TCAGTGGT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out106   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out107   ---CAGCGT-TG--TGTT-TT---TAGTGG---GAGTGAC-GTACC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out108   ---GGCGCTA-T--TTTT-TCA---GTGGT---AGGTGAC-GTATC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out109   -GTTAT--------GTTT-TC---AG-TAA---AAATAAC-ATACC-CG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out110   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out111   ---GGTATT-GT--GCTT-TT--A-GTGG----GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out112   ---GGCG-TTGT--GCTT-TCA----GTGG---GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out113   --TTGT---------GAT-TT---CAGTGG---GAGTGAC-GTCTC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out114   ------AGT-TC--AACC-TG---CTC-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out115   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out116   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out117   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out118   -TTGTG---------TTT-TC---AGTGAA---AGTGATG--TACC-TGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out119   ---GGTGCTA-T--TCTT----TTAGTGGT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out120   -CTATT---------CTT-TC---AGTGGA---AGGTGAC-ATACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out121   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out122   --------T-AT--CCTT-TC---AGTAGT---AGGGGA----CGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out123   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out124   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out125   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out126   ---GGCGCTA-T--TCTT----TCAGTGGT---AGGTGAC-GAACC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out127   ---GGCACTC-T--TCTT-TTA---GTGGT---AGGGGAC-GTACT-ACC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out128   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out129   ---CTGCGT-TG--TGCT-TT---CAGTGG---GAGTGAT-GTATC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out130   -CTTTT---------TTT-TC---AGTGAC---AGAGGAC-ATACC-TGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out131   ---AGCATTG-T--TCTT-ACA---GTGGA---ATTGATA-TACCC-A-T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out132   ---GGCG-TTGT--GTTT-TCA----GTGG---GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out133   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out134   --TTGT---------GCT-TC---TTGTGG--------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out135   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out136   --TTGT---------GCT-TC---CTGTGG--------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out137   ---GGCG-TTGT--GCTT-TCA----GTGG---GAGTGAC-GTACC-A-T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out138   ---GGCGCTT-T--TCTT-TCA---GTGGT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out139   ---GGCGTT-CT---CTT-TC---AGT----------GAG-AGTGA-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out140   --------------TCTT-TC---GGTGGC---AGACGAT-GTACA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out141   -TTGTT---------CTC-TC---AGTGCA---AGTGACA-ACTAC-GAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out142   ---GGCG-TTGT--GATT-TCA----GTGG---AAGTGAC-GTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out143   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out144   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out145   ---CAGTGA--T--ATAT-TTCTGAATGAA---AGATGA----CGA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out146   ---GGCGCTT-T--GCTT----TCAGTGGT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out147   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out148   ---GGCGCTA-T--TCTT----TCAGTGAT---AAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out149   ------------------------------------TGA----CGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out150   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out151   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out152   ---AGCG-TTGT--GCTT-TCA----GTGG---AAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out153   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out154   ------GTTA-C--ATTT-ACT---TGGA---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out155   ---GGCGTC-AT--TCTT-TC---AGTGAT---A----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out156   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out157   ---GGCGTT-AT--TCTT-TC--AGTGGT----AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out158   ---GGCG-TTGT---GTT-TCA----GTGA---GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out159   ---GGCA-TTGT--GATT-TCA----GTGG---GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out160   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out161   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out162   ---CCATAG--------T-AG--------------GTAA----TGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out163   ---GGCGCTA-T--TCTT----TCAGTGGT---GGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out164   ---CCGGCGA-T--TCTT----TCAGTGGT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out165   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out166   ---GGCGCTA-T--TCTT-TCA---GTGGT---AGGTGAT-GTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out167   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out168   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out169   ---GGCA-TTGT--GCTT-TCA----GTGG---GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out170   -ATGTT---------GCT-TC---AGTGGA---AGTGATG--TATC-ACT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out171   --------------------------GGT----AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out172   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out173   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out174   ---GGTGCTA-C--TCTT-TCA---ATGGT---AGGTGAC-GTATC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out175   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out176   ---CCGATA-TT---CTT-GT---AGT-----------------GA-AAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out177   ---AACTCT-AT--TGTT-TA---AGTGGT---AAGTTT----AC-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out178   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out179   ---TTAATA-TT--CTTT-CA---GTTACA---GGTGAAG-TACCC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out180   -CTACT---------CTT-TC---AGTGGT---AGGTTTT-CTGAA-GGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out181   -ATATT---------CTT-TC---GGCGGT---TTGTGAC-GTACA-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out182   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out183   -ATGTG---------CTT-TT---AGTGG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out184   ---AGCATT-GT--ATTT-TC---AG-TGG---GAGTGAT-GTAC-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out185   -CTATT---------CTT-TT---AGTGCA---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out186   ---GGTGAT-AT--TCTC-TC---AGTATC---AAGTGA----TG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out187   -CTATT---------ATT-TC---AGTGGT---GACGTAC-CGTCA-ACA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out188   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out189   ---GGTGCTA-T--TCTT----TCAATGGT---GGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out190   ---GGCG-TTGT--GCTT-TCA----GTGG---GAGTGAC-GTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out191   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out192   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out193   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out194   -------------------------------------GAG-GTACC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out195   --------T-AC--TCCT-TC---ATTGGT---AGGTGAT-ATACC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out196   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out197   -GTTGT---------GCT-TT---CAGTGG----AGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out198   -----------------------------------GTGGC-GGACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out199   ---GGCGCTA-T--TCTT----TCAGTGGT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out200   ---CGGCTT-GT--GCTT--T--TAATGG----GAGTGAC-TTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out201   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out202   ---CGGATT-AT--CCCT-TC---AGTGGT---AGACAA----CGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out203   ---GGCGCT-GT--TTTT--T--TAGTGGGAGTGACGTAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out204   -----CATT-AT--TCTT-TT---ACTGGT---AT----G----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out205   --------T-AT--CCTT-CA---AGTGGT---AAGCAA---TGTA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out206   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out207   ---GGTGCTA-T--TCTT----TCAGTGGT---GGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out208   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out209   ------------------------------------------TTAA-CCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out210   ---GGCTCTA-T--TCTT----TCAGTGGT---GGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out211   ---GACGAT-AT--TGTT-TC---AGTGGG---AGGTGAC-ATACA-AGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out212   ---GGCGCT-AT--TCTT-CC---AATGAT---AG----A----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out213   ---GACGCTG-T--TCTT----TCAGTGGT---AGGTGAC-GTACT-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out214   --------T-AT--CCTT-TC---AGTGGT---ACACAAC-ATACT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out215   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out216   ---GGCGCTA-T--TCTT-TCA---GTGAT---AGGTGAC-GTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out217   --------------------T--C-AGTT----GAGCGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out218   ----------AT--TCTT-TT---AGTGGT---TATCGAC-GTACT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out219   -TTTTT---------TCA-GT---GG-TAC---TGATGTT-GGAGT-GCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out220   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out221   ---GGCGCTA-T--TCTT----TCAGTGGT---AGTTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out222   ----------AT--TTTT-CT---GGCTGT---AGGCGA----GGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out223   ------------------------------------------TTAA-CCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out224   --------------------------GGT----AGGTGAC-G-TAC-TCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out225   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out226   ---CGGCGT-CA--TTTT-TT---GATGGT---AAGTGAC-GTACT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out227   -TTGAT--------TTTT-CA---AT-GGG---AGTGACG-TACTC-GT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out228   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out229   ---GGTCCT-AT--TTTT-TC--AGTGTT----AGGTGAC-GTATC-TGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out230   ---GACGCTA-T--TCTT-TCA---GTGTT---AGGTGAC-GTACC-CGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out231   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out232   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out233   ---TGTGAT-AT--TCTT-CA---GTGTGA-----GCTG----AC-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out234   -----------------------------------------GTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out235   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out236   -CTATT---------CTT-TC---AATGGT---AGGTGGC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out237   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out238   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out239   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out240   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out241   ---CGGCGT-TA--TGCT-TT---CAGTGG---AAGTGAC-GTATC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out242   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out243   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out244   ---GGTGCT-AT--TCTT-TT--AGTGGA----GGGTGAC-GTAAC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out245   -CTATT---------CTT-TC---AGTGGT---AAGTGAC-GTATC-CCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out246   -TTTTG---------CTT-TT---AGTGAT---AGGTGAC-GTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out247   ----------------TT-AC---AATGGT---AGGTGGT-GTACC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out248   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out249   --GTAT--------TTTT-TT---GG-TGG---TG------ATCCC-CTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out250   ----ACTTT-CG---GTT-AG---AGT----------AAT-GCATC-CGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out251   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out252   -----------------------------------------------GGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out253   ---GGCGTT-GT--GTTT-TC---AAGGGA---AGTGACG----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out254   ---GGAG-TTGT--GCTT-TCA----GTTG---GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out255   --TTGT---------GCT-TT---CAGTTA---GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out256   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out257   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out258   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out259   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out260   ---GGCGCT-AT--TCTT-TC---AGTGAT---AGTTGAC-GTACC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out261   -TTATT---------CTT-TA---GT-GAT--------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out262   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out263   ---GGCGCTA-T--TCTT----TCAGTGGT---GGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out264   ---GGCGTT-GT--GCTT--T--CAG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out265   -TGAAT---------TTA-TT---CC-GGT---ATTTAAC-CGATG-CTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out266   ---AGCGTT-TT--TATT-TT--AATAGT----AGGTGAC-ATATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out267   -CTATT---------CT---------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out268   -CTACT---------CTT-TC---AGTGGT---AGTTGAT-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out269   -ATATT---------CTT-TC---AATGGT---AAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out270   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out271   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out272   ---GATG-TTGT--GCTT-TCA----GTGG---GAGCGAC-GTACC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out273   ---GGCGCT-AT--TCTT-TT---AG-TGT---AGGTGAA-GTAC-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out274   ---GGCGTT-GT--GTTT--T--AAGTGG----AAG--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out275   -GTTAT--------TCTT-TC---GG-TGG--------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out276   ---GAGCCA-AC--CCAC-CC--AGTGAC----AATTAAC-GTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out277   --------T-AT--CCTT-TC---AGTGGT---AGGCAGT-GTACC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out278   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out279   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out280   -TTATT---------CTT-GC---CGTGGT---AGGTGAC-GTAGC-TGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out281   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out282   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out283   ---AACGTT-GT--GCTT--T--CGGTGG----AAGTGAC-GTGTC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out284   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out285   ---GGCG-TTGT--GCTT-TCA----GTGA---GAGTGAC-GTTACCCGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out286   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out287   -TTATT---------TTT-TG---GGAGTG---ACGTACC-C--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out288   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out289   ----------------TT-TC---AGTGAG---AAGTGAC-GTGC-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out290   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out291   ---GGCGCTA-T--TCTT----TCAGTGGT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out292   -TTGTT---------ATT-TC---AATGGG---AGTGACG-TACTC-AGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out293   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out294   -------------------------------------------TAA-CCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out295   ---GGTTT--GT--GTTT-TC---GGTGAG---ACTGAC----GT-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out296   ---GGAGATA-T--TCTT-TCA---GTGGT---AGGTGAC-GTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out297   ---GACG-TTGT--GTTT-TCA----GTGG---GAGTGAC-ATACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out298   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out299   ---------------------------------------------C----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out300   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out301   -------CT-CT--TCTT-TA--AGTGAC----AGGTAAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out302   ---GGTGTTA-T--TCTT----TCAGTGGT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out303   -ATATT---------CTT-TC---AG-TGG-----TAGGT-AAATT-CAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out304   -CTATT---------CTT--------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out305   ---GACGCT-AT--TCTT-TG---AATAGC---AGATGA----CG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out306   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out307   ---GGCTCT-AT--TCTT-TC--AGCAGC----AGGTGAC-GTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out308   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out309   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out310   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out311   -CTGTT---------CTT-TC---AGGCAG---GTG--AC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out312   -GTTGT---------GTT-TT---TAATGG---GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out313   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out314   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out315   ---GGCACC-AT--TCTT-TC--AGTGGT----AGGTGAC-GTACT-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out316   ---GGCGCTA-T--TCTT-TCA---GTTGT---AGGTGAT-GTACC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out317   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out318   -CTATT---------ATT-TC---AATGGT---AGGTGAA-GCCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out319   -------ATA-T--TCTT----TCAGTGGT---AGGTAAC-GTA-C-CCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out320   ---GACGTAC-C--CGTC-AAC---AGCGA---GA---------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out321   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out322   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out323   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out324   -----------T--TATT-TC---AGTGAT---AGGTGAC-CCACC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out325   -CTATT---------TTT-CA---GT-GGT---AGATG------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out326   --------------------------------------------CT-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out327   -ATGTT--------CTTT-CA---GT-AAG---ACGTATC-CATCA-ACT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out328   ---GGTGCTA-T--GCTT-TCA---ATGGT---AGGTGAT-GTACC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out329   --------------------------------------GG-CGTCC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out330   -----------T--TCTT--T--AAGTGG---TAGGTTAC-GTATT-CTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out331   -TTAT---------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out332   ---GCCACT-AT--TTTT-TT---AGTGGC---ACGTGAC-GTAC-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out333   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out334   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out335   -CTATT---------CTT-TA---AGTG----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out336   ---GCAG-TTGT--GCTT-TCA----GTGG---GAGTGAC-GTACT-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out337   ---GGTGTT-AT--TTTT-TA---ATGTCA---------G----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out338   -CTATT---------CTT-TC---AGTGGT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out339   ---AGCG-TTGT--GCTT-TCA----GTGG---AAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out340   -ATGTT---------ATT-TT---AC-TGA---AAATGAC-ATACC-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out341   -CTTTG---------CTT-TT---ATTGGT---AAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out342   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out343   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out344   ---GGCG-TTGT--GCTT-TCA----GTGG---GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out345   -CTATT---------CTT-AT---AGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out346   -TTGCA---------AT--TT---CAGTGG---GACTGAT-ATACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out347   ---GGCG-TTGT--GTTT-TCA----GTGG---AAGTGAC-GTACC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out348   ---GGCG-TTGT--GTTT-TCA----GTGG---GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out349   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out350   ---GGTACTA-C--TCTT----TCAGTGGT---AGGTGAC-GTATT-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out351   ---GGCG-TTGT--GCTT-TCA----GTGG---GAGTGAC-GTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out352   --------T-AT--TCTT-TC---AGCAGG---AGAAGA----TGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out353   -ATATT---------CTT-TC---AGTGGT---AATGGTA-GGTGA-TGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out354   -GTTGT---------GGT-T-------TGA---GAGTGAC-GTGCC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out355   ----TT---------T-T-TC---AATGAT---A----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out356   ---GGCGTT-GT--ATTT--T--CAATGG----TAGTGAC-GTATC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out357   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out358   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out359   -------------------------------------------TAA-TGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out360   ---GGTGAC-ATATCCTT-CA---ACAACA---AGG-CAC----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out361   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out362   ---AGCATTGTT--GTTT-CAA----ACGG---AAGTGAC-GTACA-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out363   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out364   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out365   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out366   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out367   -TGACT---------TCG-TC---AATCTC---TCAAGAT-CTATC-GGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out368   ---AATGAT-GC--TTTT-TC---AATGGA---AGTAAT----AC-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out369   ---------------TTT-TT---CAATGA---AAATGAC-GTACC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out370   ------ATT--T--TTTC-AA------TGG----AAGTG----ATT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out371   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out372   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out373   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out374   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out375   -TTATT---------CTA-TC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out376   --TTGT---------GCT-TT---CA------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out377   ---GGCG-TTGT--GTTT-TCA----GTGG---GAGTGGC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out378   ---AACGCT-AC--TCTT-TC---AGCGAT---AGATTA----AGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out379   ---CGTGCT-AT--TCTT-TC---AATGGT---A-----G----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out380   ------------------------AG-TGA---AAGTGAC-GTAC-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out381   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out382   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out383   ---GGCACTA-T--GCTT----TCAGTGGT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out384   -GTCAT---------GTT-TT---TAGTGG---GAATGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out385   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out386   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out387   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out388   ---GGTGTT-TT--TTAT-TT---CAGTGC---TAGGTGA-TGTGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out389   -TTATT---------CG--TA---GG-TGA---CATACCC-ATCAA-TAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out390   ---TGCGCTA-C--TTTT-TCA---GTGGT---AGATGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out391   ---GACACTA-T--TCTT----TCGGTGGT---AGGTGAC-GTACC-TGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out392   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out393   ---AACGTT-GT--CCTT-T------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out394   ---GCGC-TA-T--TCTT----TCAGTGGT---AGGTGAC-GTGCC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out395   ---GGCG-TTGT--GTTT-TCA----ATGG---GAGTGAT-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out396   --------------------------------------------A-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out397   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out398   --------------CGTG-GGT----GCTC---GCATTTC-CCTCC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out399   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out400   -ACGAT---------ATT-CT-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out401   ---CGTCTT-TG--TGCT-TT---CAGTGG---GAGTGAA-GTACC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out402   ---GACGCTA-T--TCTT-TTA---GTGGT---AGGTGAC-TTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out403   -------------------------TGGC----AGGTGAT-GTACT-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out404   ---GGCA-TTGT--GCTT-TCA----ATCG---GAGTGAC-GTACC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out405   --------------ACTT-CC---AG-TAG--------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out406   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out407   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out408   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out409   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out410   ---GGCGCT-AT--TTTT-TC--AATGGT----GGGTGAT-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out411   -----CTAT-----TCTT-TC---AG-------TGGTAAG-TGAC-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out412   -GATGT---------GTT-TT---CAGTGG---GAGTGGC-GTATC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out413   -TTGCT---------C----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out414   ---GGCGCTA-T--TCTT-TCA---GTGGT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out415   ---GGCGTT-GT--GTTT-TC---AG-TGT---GACTGGC-GTAC-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out416   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out417   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out418   ---GGCGCTA-T--GCGT----TTAGTGGT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out419   ------------------------------------TGGC-GTATT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out420   ---GGTGAT-GT--GCTT--T--TAGTGG---CGAGCGAC-GTAAC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out421   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out422   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out423   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out424   ---GGCG-TTGT--GCTT-TCA----GTGG---GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out425   -------------------------------------------------T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out426   -ATTGT---------GTT-TT---CAATGG---GAGTGAT-GTATT-CCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out427   ---GGCGCTA-T--TCTT-TCA---GTGGT---AGGTGAA-GCGAG-GCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out428   ---GGCGTCA-T--TCTT----TCAGTGGT---AGGTGAC-GTGCC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out429   -GTTGT---------GAT-TT---CAGTGA---GAGTAAT-GTACA-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out430   ---GGCG-TTGT--GCTT-TCA----ATGA---GAGTAAT-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out431   ---GACG-TTGT--GCTT-TCA----ATGG---AAGTGAT-GTAAC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out432   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out433   ---GGCGTT-GT--TTTT-TC---A-ATGA---GAACAGT-TAAA-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out434   -ATCTT---------CTT-TC---AATGGG---A-GTGAC-GTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out435   --------T-AT--TCTT-TC---AGCGCT---AAGCGAC-ATACC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out436   -ATATT---------CTT-TC---GGTGGT---AGTTGA-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out437   -CTATT---------CTT-TC---AGTGGT---AGGTGGG-GTACC-TGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out438   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out439   ------GTT-AT--TCTT-TT--AGCGGT----AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out440   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out441   ---GGTGCTA-T--TTTT----TCAGTGGT---ATGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out442   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out443   ---TGCGTTA-T--TCTT----TCAGTAGT---AGATGAC-GTACC-TAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out444   ---CGCG-TTGT--GCTT-TCA----GTGT---GAGTGAT-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out445   --CTGT---------GTT-TT---CAGTCG---GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out446   --------------------------------------AC-GTACC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out447   ---AGCGCT-AT--TCTT-TC---AGTGGT---ATGTGAT-GTACC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out448   ---AGCGTT-GT--TTTT-TT--CAGTGT----GAGTGAC-ATACC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out449   ---GGCGCTT-T--GCTT-TCA---GTGGT---ATGTGAC-GTAGC-CGA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out450   ---GACG-TTGT--TCTT-TCA----GTGG---GAGCGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out451   ---GGCA-TTGT--TCTT-TCA----GTGG---GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out452   ---GACGTT-AT--TTTT-TT---AGTGGT---AGGTGA----CG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out453   ---AGCG-TTGT--GCTT-TCA----GTGG---AAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out454   ---AACGCTA-T--TCTT-TCA---GTGGT---AGGACTC-AGTCT-TTC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out455   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out456   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out457   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out458   ---GGCGCTA-T--TCTT----TCAGTGGT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out459   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out460   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out461   ---GGCACT-AT--TCTT-TC--GGTGGC----AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out462   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out463   ---GGCG-TTGT--GTTT-TCA----GTGG---GAGTGGC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out464   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out465   -ATTGT--------GCTT-TC---AG-TAA---CGTACTC-GTCAA-CT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out466   ---AGCG-TTGT--TATT-TTA----GTGA---GAGTGAC-GTACC-TGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out467   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out468   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out469   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out470   ---TTGCGC-TT--TATT-TC--AGTGGT----ATGTGAC-ATATC-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out471   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out472   ---GGCGCTA-T--TCTT----TCAGTGGT---AGGTGAC-GTACT-TCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out473   -TTGTG---------TTT-TC---AGTGGG---AGTGACG-TACGG-CAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out474   ---GGTGCT-AT--TCTT-TC---AATGAT---AGCTAAC-TTACC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out475   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out476   -CTATT---------TTG-TC---AGTGGT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out477   -CTATT---------CTT-TC---AATGGG---AGTGACG--TACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out478   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out479   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out480   ---GGCGTA-GT--TCTT-TC---AATGGG---AGTGCCA-TAG------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out481   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out482   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out483   -CTATT---------TTT--------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out484   -GTTGT---------TTT-TT---CAATGA---AAGTGAC-TTACT-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out485   -TTATT---------CTT-TG---AATGAT---AAACACA-TGTAT-GGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out486   ---GGCGCTA-T--TCTT----TCAGTGGT---AGGTGAC-GTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out487   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out488   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out489   --------T-AT--CCTT-TC---AGTTGT---AACCAA----CGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out490   ---AGCG-TTGT--ACTT-TCA----GTGG---GAGTGAC-GTACC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out491   ---GGTGCTA-T--TCTT-TCA---ATGGT---AAGTGAC-GTACC-TGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out492   ------------------------------------------------GT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out493   ---CGTTGC-TG--TTTT-TC---AATGAT---AAGTGA----TGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out494   ------GATA-T--TCGT-TCG---GTGGT---AGGTGAC----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out495   ---CACGCTA-T--TCTT-TCA---GTGGT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out496   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out497   ---GGCGCTA-T--TCTT----TCAGTGGT---AGGTGAT-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out498   -ACA----------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out499   ---GGTGCTA-T--TCTT----TCAGTGGT---GGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out500   -CTAAT--------GATG-TT---TT-T----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out501   ---GACGAT-AT--TCTT-TC---AGTGGT---A----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out502   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out503   -------------------------GTGG----GAGTGAC-GTACC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out504   --TCGT---------GCT-TT---TAGTGG---CA---------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out505   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out506   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out507   ---GGCGATA-T--TCTT-TAG---TGCTG---GGTGACG-TAGCC-GTC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out508   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out509   ---CGGCGT-TA--TGCT-TT---CAGTGA---AAATGAC-ATGCC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out510   ---GGCGCTA-T--TCTT-TCG---GCGGT---AGGTGAT-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out511   ------CCA-AC--CCAC--C---AGGGAC---CAA-------GCT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out512   -CTATG---------CTT-TC---AGTGGT---AGGTGAC-GTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out513   ---GGCA-TTCT--GCTT-TCA----GTGG---GAGTGAC-GTGCC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out514   -CTATT---------CTT-TC---AGTGGT---CGGTGGT-GTATC-CAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out515   ---GGCGCTA-T--TCTT----TCAGTGGT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out516   ---GGTGTT-GC--TCTT-TC---AGTGGT---AGG-TAA----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out517   ---TGCGTT-GT--TTTT-TC---AGTGCT---AGATAAC-ATACC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out518   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out519   AGT-------------------GGT--------AGGTGAC-GCATC-AGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out520   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out521   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out522   ---GGCATT-GT--GTTT--T--CAGTGA----GATTGGC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out523   ---TGCGCTA-T--TTTT-TTG---ATGGT---AGGTGAC-GTATC-TGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out524   -----------------------------------GTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out525   ------------------------------------------AACC-GGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out526   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out527   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out528   ---GGCG-TTCT--ATTT-TCA----GTGG---GAGTGAT-ATACC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out529   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out530   --TTGT---------GCT-TT---CAGTGG---GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out531   ----------------TT-TC--AGTGGT----AGGTGAC-GTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out532   -CTATT---------TTT-TC---AGTGGT---AGGCGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out533   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out534   ---GACACTA-T--GCTT-TCA---AGGAT---AGGTGAC-GTGCC-TGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out535   ---GGCGCT-TT--ACTT-TC--AGTGGT----AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out536   -GATCT--------G-----------------------TC-GACGA-CT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out537   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out538   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out539   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out540   -TTGTT---------CTT-TC---AATGGT---AGATGAT-GTATC-CCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out541   ---GACGGT-GT--TCTT-TC---AATGGG---AGTGAC----AT-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out542   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out543   ---GACGTT-GT--GGTT-TC---AGTGGT---AAACGA----TGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out544   ---GGTG-TTGT--GTTT-TCA----GTGG---GAGTGAC-GTAAC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out545   -TTTGT---------GCT-TT---CAGTGG---GAGTGAC-GTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out546   ---CCGCGTA-T--GCTT----TCAATGGT---AGGTGAC-GTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out547   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out548   --TTGT---------GCT-TT---CAGTGG---GACTGAC-GTAGC-TGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out549   ---GGCA-TTGT--GCTT-TTA----GTGG---GAGTGGC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out550   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out551   ---GGCGTT-GC--GTTT-TC---AT-TGA---GAGTAAC-GTAC-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out552   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out553   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out554   ---TGCGCT-AT--TTTT-TC--AGTGGT----AGATGAT-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out555   -CT-----------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out556   -CT-----------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out557   ---GGTG-TTGT--GCTT-TCA----GTGA---GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out558   -----------------T--T--TCAGTG----GAGCGAC-GTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out559   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out560   -TTCTT---------TCA-GT---G--------AGAGTGACATACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out561   ---GGAG-TTGT--GTTT-TCA----GTGG---GAGTGAT-GTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out562   ---GGCATT-GT--TATT--T--CAGTGC----GAGTGTC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out563   ---GACACT-AT--TTTT-TC---AGTGGT---AGGTGAC-GTAT-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out564   ---GGCGAC-AT--TCTT-TC---AGTGGT---AAGTGAC-GTACC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out565   ---AGTGCT-AT--TCTT-TT--AGTGGT----AGGTGAC-GTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out566   ---AACGCTA-T--TCTT----TCAGTGGT---AGGTGGC-GTATT-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out567   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out568   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out569   ---GGCG-TTAT--AATT-TCA----GTGG---GAATGAC-GTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out570   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out571   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out572   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out573   ---GGTG------------------TTGTGATTTCAAGAT-GTACC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out574   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out575   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out576   -CTTGT---------CAT-GG---GTGGCT---GCATTTA-CCTTG-ATT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out577   ---GGCGTT-GT--GTTT--T--CAGTGG----GAATGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out578   ---CAACGA-CG--TTCT-TT---CAGCGG---AAGTAGC-GTACC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out579   -CTATC---------CTT-TT---AGTGGT---AGGTGAC-ATACC-TCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out580   ---GGGGTT-GT--GCTT-TC--T-GTAA----GAGTGAC-GTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out581   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out582   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out583   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out584   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out585   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out586   ---AGCTTT-GT--TCT--TT---TCATGG---GAGTGAC-CTAT-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out587   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out588   ---GGCGCT-AT--TCTT-TC--AGTGGT----AGGTGAC-GT--A-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out589   -CTATT---------CTT-TC---AGTGGT---AGGTGAC-GTACG-TCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out590   ---GCCACTA-T--TCTT----TCAGTGGT---AGGTGAC-GTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out591   ---GGCTCTA-T--TCTT----TCAGTGGT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out592   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out593   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out594   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out595   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out596   ------GTCA-C--ATTT-ACG---T------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out597   ---GGCG-TTGT--GATT-TCA----GTGG---GAGTGGC-GTACT-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out598   ---GACG-TTGT--GCTT-TCA----GTAG---GAGTGAC-GTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out599   ---GGCGCTA-T--TCTT-TTA---GTGGT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out600   ---GAAGCT-AT--TCTT-TC--ACTGGT----AGATGGC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out601   ---GGCAATA-T--TTTT-TTA---GTGAT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out602   ---AGCG-TTGT--GCTT-TCA----GTGG---GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out603   ---GGTGTT-GT--GTTT--T--CACGGA----AAGTGAC-GTACT-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out604   ---ACGGAC-GT--TGCT-TT---CGGTGA---GAGTGAC-GTACA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out605   AGT-------------------GGT--------AGATGAC-GTATC-TGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out606   -----CGCTT-T--GTTT-TCA---GTGGT---AGGTGAC-GTATC-CGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out607   ---GACGCTA-T--TCTT----TCAGTGGT---AGGTGAC-GTACC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out608   ---GACGCT-AT--TCTT-TC---AGTAAT---AAGTAA----CGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out609   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out610   ---TCCTAA-AT--GTTT--T--CAATGA----GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out611   ---GGCGCTA-T--TCTT----TCAGTGGT---AGGTGGC-GTACC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out612   -TTTTC---------TTT-CA---GTGGTA---GGTGATG--TACC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out613   ---GGCGCTA-T--TTTT-TTT---AGTGG---TAGGTGA-CGTAT-TCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out614   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out615   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out616   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out617   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out618   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out619   --------T-AT--TCAT--------TTCA---GGGAGGT-GGCAT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out620   AGTGGCGCTA-T--TCTT----TCAGTGAT---AGGTGAT-GTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out621   ---GGCGCT-AT--TCTT-TT--AGTGGT----AGGTAAC-GTACC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out622   -TTGTG---------CTT-TC---GGTGTG---AGTGACA--TACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out623   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out624   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out625   ---GGCGTT-GT--GTTT--T--CAGTGG----GAGTGAT-GTATT-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out626   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out627   -------------------TC---AGTGGT---AT----G----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out628   ---GATGAT-GT--TTTT-TC---AAGAG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out629   -AGAAT--------TTAA-C------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out630   -CTATA---------ATT-TC---AGTGGT---AGGTGGC-GTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out631   --TTGT---------GCT-TT---CAGTGG---GAGTGAC-GTACC-TGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out632   ---------------------------------------------C-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out633   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out634   ---CGGCAT-TA--CACT-TT---CAGTGG---AACTGAC-ATACC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out635   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out636   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out637   ---CGGCGT-TG--CACT-TT---TAGTGG---GAGTGAC-GTGCT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out638   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out639   --------T-TT--ACCT-CT---ATTTAT---TTTAGAA----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out640   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out641   ---GGCGCTA-T--GCTT----TCAGTGAT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out642   ---GGCGATA-T--CCTT----TGAGTAGT---AGGTGAC-GTAAC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out643   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out644   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out645   ---GGCGTT-GT--GTTT--T--CAGTGG----AAGTAAC-GTACA-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out646   ---GGCGCTA-T--TTTT-TCA---GTGGT---AGGTGAC-GTACT-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out647   --------T-AT--CCTT-TG---AGTGGA---AGGTAAC--ACAC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out648   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out649   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out650   -TAGTC---------TTT--------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out651   -CTATT---------ATT-TC---AAAGGT---AGGTGAC-ATACC-GTC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out652   ---GGCGCTA-C--TCTT-TAA---GCGGT---AGGTGGC-ATACC-CAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out653   ---GCGCGT-AT--TCTT-TC---AGTGAT---ATGTGAT-GTACA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out654   -TTGTT---------CTT-TC---AGGAGG---AGTGACG--TACT-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out655   ---AGCGTT-GT--GTTT--T--CAGTGG----GAGTGAC-GTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out656   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out657   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out658   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out659   -CTGTT---------TTT-TC---AGTGAT---AGGTGAC-GTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out660   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out661   -GTTGT---------GCT-TT---CAGTAG---AAGTAAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out662   -CTATT---------ATA-TT---AGCGAT---AGGTGAC-ATATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out663   ---GGCGTT-GT--GCTT--T--CAGTGA----GAGTGAC-GTACC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out664   ---CAAGAT-TT--AACT-AG---CGTGAT---AGTTGAC-GTACC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out665   ---TACGTT-GT--TATT-TC---AG-TGA---AAGTAAC-A-TA-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out666   ---GGCGCTA-T--TTTT-TCA---GTGGT---AGGTGGT-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out667   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out668   ---GATACT-AT--TCTT-AT---TAGTTG---ACGTCC----CC-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out669   ---------------CCT-TT---CAATAG---GAGCGAC-GTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out670   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out671   ---GGCGCTT-T--ACTT-TCA---GTGGT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out672   ---GGCGATA-T--TCTT----TCAGTGTT---AGGTGAT-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out673   ---TTCTAG-AT--TTAT-TT---CAGTGA---GAGTGTT-GTACC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out674   -------------------------------------------------T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out675   -GTTGT---------GTT-TT---CGGTGG---ATGTGAC-GTACC-CGA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out676   -CTATT---------CTT-TC---AGTGTT---AGGTCAT-GTA------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out677   ---GCCGTTA-T--TCTT-TTA---GTGGT---AGGTGAC-ATTCC-CTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out678   -CTCTA---------TTA-TT---TCAGTG---GTA--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out679   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out680   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out681   --TTGT---------GTT-TT---CA------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out682   ---GGCGCTA-T--TCTT----TCAGTGGT---AGGTGAC-GTGCC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out683   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out684   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out685   -------------------------------------------------T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out686   ---GGCATT-GT--GTTT--T--TAGTGG----GAGTGAC-GTACA-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out687   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out688   ---GGCGCTG-T--TCTT----TCAGTGGT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out689   -TTGTG---------CTT-TC---AGTG----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out690   -ATGTT---------TTT-TC---GGTGGG---CGTGATG-TACCC-ATC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out691   ---GTCG-TTGT--GCTT-TCG----GTGG---GAGTAAC-GTACC-AGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out692   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out693   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out694   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out695   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out696   ------GTT-AG--CCTA-TC---AGTGGT---AGGAGCC-ATACC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out697   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out698   ---GGCG-TTGT--CCTT-TAA----ATGA---GAGTGAC-GTACC-TGA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out699   ---GGTG-TTGT--GCTT-TCA----GTGA---GAGTGAT-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out700   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out701   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out702   ---GGTG-CGAT--GTAC-CAT----CAA---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out703   ---AGGCAA-TG--TTTC-TT---TTCTCAGCGAAAGCG----AT-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out704   ---GGCGTTA-T--TCTTTCACTAGTAGTT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out705   ---GAACCA-GT--CAAT-TC---AGATTC---AAATCTC-TTTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out706   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out707   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out708   ---GACGCTA-T--TTTT----TTAGTGGT---AGGTGGC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out709   ---GGTG-TTGT--TATT-TCA----GTGC---GAGTGAC-GTACC-ACT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out710   ------------------------------------------TTAA-CCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out711   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out712   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out713   ---GGCGTT-GT--GCTT-TC--A-GTGG----GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out714   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out715   -CTATT---------CTT-TC---AGTGGT---AGGCGAG-GCGCC-TGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out716   ---GGCGCTA-T--TCTT-TTA---GTGGC---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out717   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out718   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out719   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out720   --TTGT---------GTT-TT---CAATGG---GAGTGAT-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out721   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out722   -------CT-AT--TTCT-TC---AGTGGT---AGGCAT----TGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out723   -------CT-AT--TTTT-TG---AGTGGT---GGGTGAC-TTAC-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out724   -CTATT---------TTT-TC---AATGGT---AGGTGAC-GTA------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out725   ---GGCG-TTGT--GCTT-TCA----GTGG---GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out726   ---GGTT-TTGT--GCTT-TCT----GTGG---GAGTGAC-GTATC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out727   ---CGGC---GT--TGTT-TCA----GTGG---GAGTGAC-GTACC-TGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out728   T-------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out729   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out730   ---CGGCAT-TG--TACT--T--TTGTGG----GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out731   ---GGTG-TTGT--GCTT-TTA----GTGG---GAGTGAT-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out732   ---GGCTTT-AC--GCTT-TC---GATGTC---CATTGA----CG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out733   -ACTAT--------TCTT-TC---AA-TG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out734   ---GGCG-TTGT--GT-T-TTA----GTGG---GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out735   -CGCTA---------CTT-TC---AATGAT---AGCTGAC-GTACT-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out736   ---GGCGTT-GT--TTTT-TC---GGTGGG---------A----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out737   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out738   -CTACG---------ACG-TG---CCTATG---ATGACTACATCAA-TCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out739   --CAAT---------CTC-TC---AATATC---T----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out740   ---GGGATT-AT--CCTT-CT---AGTGGC---AGGTGAC-GTAC-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out741   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out742   -CTATT---------CT---C---AATGGT---AGGTGGT-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out743   ---GGCGCT-AT--GCTT-TC--AGTGGT----AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out744   ---GACGTTA-T--TCTT-TCA---GTAGT---AGGTGAC-ATACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out745   ---GGCATT-GT--GCTT-TT--TAGTGG----CAATGAT-ATGCT-TGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out746   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out747   -CATTT---------C-T-TG---GATTAT---TTCAGGA-TTTAA-CCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out748   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out749   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out750   ---GGCGTT-GT--GCTT--T--CAGTGA----AAGTGCC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out751   ---GGTGCT-AT--TCTT-TT--AGTGGT----AGGTGAC-GCACA-CTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out752   ---GGCG-TTGT--GCTT-TCA----GTGG---GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out753   -CTATT---------CTT-GT---AGTGGT---AAGTGAT-GTACC-TGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out754   -ATATT---------CAT-TC---AGTGGT---AGATGAC-TTATC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out755   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out756   ---GGCA-T------------------TGT---TCTTTCA-ATATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out757   ---GGCAGCA-T--TTTT----TCAGTGGT---AGGTGAT-GTACC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out758   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out759   ---GGCGCTA-T--TGTT----TCAGTGGT---GGGTGAT-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out760   ---GGCGCTA-T--TTTT----TCGGTGGT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out761   -GATGT---------TCT-TT---CGGTGA---GATTGAC-TCGCC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out762   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out763   -GTTGT---------GTT-TT---CAGTGA---GAGTGAC-ATACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out764   ---AGCGTTT-T--TATT-TCA---GTG-G---GAGTGGT-GTGCC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out765   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out766   ------GTGC-C--ACGT-TTC---CTGA----------A----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out767   --------A-TT--TCAG-AA-----TTTA---ACCGGC----GCT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out768   ---GAGG-TTGT--GCTT-TCA----GTGG---GAGTGAC-GTACC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out769   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out770   ---GGCG-TTGT--GTTT-TCA----GTGG---GACTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out771   ------ATCA-C--ATTT-CCC---TGAAT---TATTCCA----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out772   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out773   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out774   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out775   --TTGT---------GTT-TT---AAGTGG---GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out776   ---AGCG-TTGT--GCTT-TTA----GTGG---GAGTGAC-GTACT-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out777   ---GGCGAT-AT--TCTT-TC---AATGGC---AAGTGAT-GTACC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out778   -----CGTT-GT--GCTT-TC--A-GTGG----GAGTGAC-ATACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out779   ------CGT-TG--TGCT-TT---CAGTGT---GAGTGAT-GTACC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out780   ---------------TTC-TT---GTGGTG---GAGTGAC-CTATC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out781   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out782   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out783   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out784   ---GGCGCTATT--CTTT-TAA---GTGGT---AGGTGAC-GTACC-TGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out785   -GCTGT---------TTC-TT---TAGTGG---GTGTGAC-ATATC-CGA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out786   ---GACGCTA-T--TCTT-TCA---GTAGT---AGGTGAC-GTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out787   ---GGCGCT-AT--TCTT-TT--AGTGAT----AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out788   -ATGTT---------CTT-TC---CA-TGA---GAATGAC-GTAAG-GTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out789   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out790   ---CGTCACT-A--TTCT-TCA---GTGGT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out791   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out792   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out793   -----------------------------------------GTACC-TGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out794   ---GGCGTT-GT--GTTT-TC--A-ATGG----GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out795   ---CGCGCTA-T--TTTT-TCA---GTGGT---AGGTGAT-TTACT-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out796   -----TGTT--T--TTTT-AG-----TGGG----AGTGA----CGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out797   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out798   ---GGCG-TTGT--GCTT-TCA----GTGG---GAGTGAC-CTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out799   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out800   ---GGCGCTA-T--CCTT----TCAGTGGT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out801   ---GGCATT-GT--GTTA-TC---AG-GAG---AGTGACA-T-AC-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out802   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out803   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out804   ---CGGCGT-TG--TGCT-TT---CAGTTG---GAGTGAC-GTACC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out805   ---GGTACTA-T--TATT-TCA---GTGGT---AGGTGAC-TGCGA-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out806   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out807   ---GGCGCTA-T--TCTT----TCGGTCAT---AGGTGAC-GTACC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out808   ---AGCGCTA-T--TATT-TCA---GTGGT---AGGTGAC-GTACC-TAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out809   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out810   ---GGCGCTA-T--TCTT----TCAGTGGT---AGATGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out811   ---GGTACT-AT--TCTT-TT---AGTGGT---AGGTGAC-GTACC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out812   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out813   --------------------------------------------CC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out814   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out815   --------T-AT--CCTT-TC---AGTGAT---AGGCG----ACGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out816   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out817   --CTGT---------TCT-TT---TAGTGG--------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out818   ---GGCACT-AT--TCTT-TC---AATGGT---CGGTGAC-GTACC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out819   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out820   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out821   ---GGCGCTA-T--TCTT-TCA---GTGTT---AGGTGAC-ATACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out822   ---GGCGCTA-T--TTTT----TCAGTGGT---AGGTGAC-ATACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out823   ---GGCG-TTAC--ATTT-TCA----GTGG---GAGTGAC-GTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out824   ---AGCG-TTAT--GCTT-TTA----GTGG---GAGTGAC-GTACC-TGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out825   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out826   -ATACT---------CTT-TC---AGCGGT---AGGTGAC-GTACG-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out827   ---GGCGCTA-T--TCTT----TCAGTGGT---GGATGAC-GTAC-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out828   ---GGCG-TTGT--GCTT-TCA----GTGA---GAATGAC-ATACT-CCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out829   ---CGGCGT-TG--TGAT-TT---CAATTA---GAATGT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out830   ---GGCGTT-GT--GCTT--T--CATTGG----AAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out831   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out832   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out833   ---GGCGTT-GT--GTTT-TC--A-ATGG----AAGTGAC-GTATC-CCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out834   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out835   ---TTAACC-GG--CGCT-AT--TCTTTC----AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out836   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out837   ---GACGTT-AT--TCTT-TC--AGTGGT----AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out838   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out839   ---CGGCGCT-A--TTTT-TCA---GTGGT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out840   ---GGCGTT-GT--GTTT-TC--A-GTAG----GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out841   ------------------------GTGGT----GGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out842   ---GGCG-TTGT--GATT-TCA----GTGG---GAGTAAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out843   -TAATA--------ATAG-GT---GA-TGA---------------A-CT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out844   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out845   -GGCGAAGT-GT--TTTT-TC---AGCGGC---AGGTGAC-GTAGT-GTC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out846   ---GGCGCTT-C--GTTT----TCAGTGGT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out847   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out848   ---------------------------------------------C-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out849   ---GATG-TTGT--GCTT-TCA----GTGG---GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out850   ----------------TT-TC---AGTGGC---AAGCCAG-TATCC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out851   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out852   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out853   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out854   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out855   --TTGT---------GTT-TT---TAATGA---GAGTGAC-GT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out856   --------------------------------------------CC-CCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out857   -CTATT---------CTT-TC---AGTGGT---AGGTGAC-GTACC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out858   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out859   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out860   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out861   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out862   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out863   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out864   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out865   ---GGCACTA-T--TCTT-TCA---TTGAT---AGGTGAC-GTACT-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out866   -TTGTG---------CTT-TC---AGTGGG---AGTGACG-TACCC-ATG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out867   -GTTGT--------TATC-TC---AA-TGG---TA------GGTGA-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out868   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out869   ---ACTCAC-AT--TCTT-TC---AG-TGG---T----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out870   --TTGT---------GTT-TT---CAGTGG---TA---------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out871   ---GGCG-TTGT--GCTT-TCA----GTGG---GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out872   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out873   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out874   ---GGCTCT-AT--TCTT-TA---AGTGGT---AGGTGAC----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out875   ---GGCT-TTGT--GCTT-TCA----TTGT---GAGTAAC-GTGTC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out876   ---GGTG-TTGT--GTTT-TCA----GTGG---GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out877   ---GGCG-TTGT--GCTT-TCA----GTGG---GAGTGAA-GTACT-CCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out878   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out879   ------GTT-AT--TTTT-TA---GTGGTA---AGTGAC----GT-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out880   -TTATT---------CTT-CC---AG-TGG---TAAACGA-CACAA-CAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out881   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out882   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out883   ---GTACCC-AT--AGCC-CA---CCGTGG---ATCAA-----ACT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out884   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out885   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out886   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out887   -TTGTG---------TTT-TC---AGTGGG---AATGAAG-TATCT-GTC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out888   -CTATT---------CTT-TC---AGTGGT---AGGTGAC-GTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out889   ---CGGG-TTGT--ACTT-TCA----ATGG---GAGTGAC-GTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out890   -TTGTG---------TTT-TT---AGTGAG---AGTGACG--TACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out891   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out892   -TCTCA---------AGA-TG---ATGTGC---CGGACCA-GTCTC-TCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out893   -------------------TT---AGTGGC---AAGTGAT-GTACC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out894   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out895   -CTATG---------TTT-TT---AGTTTT---AGGTGAC-GCACT-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out896   -CTATT---------CTT-TC---AGTGGT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out897   ---GTCCTG-GT--TGTT--T--CAGCGG--TAGTGATGT-ATGGC-TGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out898   ---GACGCTT-T--GCTT-TCA---GTGGT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out899   -ATATT---------CTT-TC---GACAGT---AGCTGAT-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out900   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out901   ---GGCGTT-GT--GCTT--T--TGGTGC----AAGCGGC-GTAAC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out902   -CTATT---------CTT-TC---AGTGGT---AGGTGTC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out903   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out904   ---CCAGTCT-T--TCAG-TGG---TAGTT---GACGTAT-CCGCC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out905   -ATTGT---------TCT-TT---CAGTGA---GAGTGAC-ATATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out906   ---GATGTT-AT--TCTT-TC--AGTGGT----AGGTAAT-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out907   -TAGTG----------------------GG---AGTGATG--TACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out908   -----GGAT-TT--AACC-GA---TG-------AGGTGGC-GTAC-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out909   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out910   --CAAA--------TTTG-TC---AA-TCT---TT------AAA------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out911   ------TGT-TT--AACC-GT---AGA------AGTGGC----GT-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out912   ------------------------AGTGGT---AGGTGAC-ATACC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out913   -CACCC---------G---------------------------------C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out914   ---GGCACTA-T--TCTT----TCAGTGAT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out915   ---GGCGCT-AT--TCTT-TC--AGTGGT----AGGTGAC-GTACT-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out916   ---GGCG-TTGT--GTTT-TCA----GTAG---GAGTGGC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out917   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out918   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out919   ---ATGATA-GG--TCTT-TC---AATGCC---AGTGAT----AT-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out920   ---GGTA-CGTG--TTAT-TCTTTTAACTG---GGAGTGA-CTCAC-CCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out921   ---AGCGTT-AT--TATT-TC---AG-TGG---TAGATGG-TGTG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out922   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out923   -CTATT---------CTT-TC---AGTGGT---AGGTGAT-GTACC-TGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out924   --TTGT---------GCT-TT---TAGTGG---GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out925   ---CGCACT-AT--TTTT-TC--AGTGAT----AGATGAC-GTACC-TGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out926   -GTTGT---------TCT-TT---CTTTGG---GAATGAC-ATACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out927   ---GGCG-TTGT--GCTT-TCA----ATGG---GAGTGAC-GTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out928   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out929   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out930   ---GGCG-TTGT--GCTT-TCA----GTGG---GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out931   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out932   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out933   ---TGCG-TTGT--GCTT-TCA----GTGG---GAGTGAC-GTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out934   ---GGCGCTA-T--TATT-TCA---GTTGT---AGGTGAC-GTACC-GTC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out935   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out936   ---GGTTTT-GT--GGTT-TT---TAGTAG---GAGTGAC-GTATC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out937   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out938   --------T-GT--CCTT-TC---AGTAGT---AGATG----ACGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out939   ---GGCGTT-TT--GCTT-TC--AGTGGT----AGGTGAC-GTACC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out940   ---GGTG-TTGT--GCTT-TCA----GTGG---GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out941   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out942   ---GGCG-TTGT--TATT-TCA----GTGG---GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out943   ----TAAAA-TT--GACA-TG--AGTGCT----CACATTT-TCTGG-ATA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out944   -TTGCG---------CTT-TT---AGTGGG---AGTGACG-TACCG-TTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out945   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out946   -CTATT---------CTT-TC---AGTGGT---AGGTGAT-TTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out947   ----------AT--GCTT-TC---AGTGAC---AGGCGAC-GTCTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out948   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out949   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out950   ---GTCAGTA-T--TCTT-TCA---ATGAT---AGGTGAC-GTACC-G-T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out951   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out952   AGTGGTAAAT----------------------------GA-CTACC-CCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out953   ---GGCGCTA-T--TTTT-TCA---ATGGT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out954   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out955   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out956   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out957   ---TGGCGATAT--TACT-ACTTCAAGGGA---AAATGA----CTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out958   -TTATT---------CTT-TC---AGTGAT---AGGTGAC-GTAA--CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out959   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out960   ---GGCATT-AT--TTTT-TT--AGTGAT----ATGTGAT-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out961   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out962   ---GGTGCT-AT--TC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out963   ---GGCG-TTGT--GCTT-TTA----GTGG---GAGTGAC-GTACC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out964   ---TGTGGT-CT--GGTT-TC--AGTGGT----A-------GGTGA-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out965   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out966   ---GGCGTT-GC--GTTT-TC---AGTAAG---AGTGTCG-TAT------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out967   -TTATT---------CTT-TC---AGTGGT---AGGTGAC-ATACC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out968   -CTATT---------CTT-TC---AGTGGT---CGTGTGT-GCGTT-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out969   -----------------------------------------GCACC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out970   -CTATG---------CTT-TC---AGTGGT---AGGTGAC-GTACC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out971   ------GCTA-A--CATT-AAC---CTGAA---TTT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out972   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out973   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out974   ---GACGCTA-T--TCTT-TCA---GTAGT---ACGTGAC-GTACC-CAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out975   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out976   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out977   ---GATAAC-GTAATCTC-TA---ACAACG---AGG-AAT----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out978   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out979   ----------------TT-TC---AATGGT---AGGCGGT-GCACC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out980   ---GGCA-TTGT--GCTT-TCA----GTGG---GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out981   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out982   -CCACT---------CTT-CT---AGTGGT---ACTCGTC-AACAG-CGA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out983   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out984   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out985   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out986   ---GGCG-TTGT--GCTT-TCA----GTGG---GACTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out987   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out988   ---GGCGCTA-T--TCTT----TCAGTGGT---AGGTGAC-GCACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out989   ---GGTGTT-GT--GTTT--T--CAGTGG----GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out990   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out991   ----ACGAG-GC--GCCA-TC---AATTTC---AGG-ATA-AGT------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out992   -TCATG---------CTT-TT---AGTGGG---AGTGACG-TACCG-GAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out993   ---GACG-TTGT--GTTT-TCA----GTGG---GACTGAC-ATACC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out994   ---GGCG-TTGT--GCTT-TCA----GTGG---GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out995   ---CGGCGT-TT--GCTT--T--CAGTAA----AAGTAAC-GAACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out996   ---GGCG-TTGT--GCTT-TCA----GTGG---GAGTGAT-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out997   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out998   ---GGCGCTA-T--GCTT----TCAGTGGT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out999   ---CGGCGT-TT--TGTT-TC--A-ATGG----GAGTTAC-GTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1000  ---GGCGCTA-T--TTTT----TCAGTGGT---AGTTGAC-GTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1001  ---GACGTT-AT--TTTT-TC---AGTGGT---AGGTGAC-GTACC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1002  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1003  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1004  -TTGTT---------CTT-TC---AACGA---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1005  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1006  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1007  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1008  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1009  -----CGCC-AT--TCTT-TC---AACGAG---AGGTGC----CG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1010  ---GGCGATA-T--TCTT-TTA---GTGAT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1011  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1012  ---AGCCTT-AAACTATT-AG---ATGTTT--------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1013  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1014  ---GGCGTT-GT--GTTT-TC---AG-TGC---GAGCGAC-GTAC-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1015  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1016  --TTGT---------GCT-T------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1017  -GTTGG---------TAA-T---------------------GTACA-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1018  -TTGTT---------CTT-TT---AGTATG---AGTGACG-TACCC-GTC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1019  ------GTCA-T--ATT---------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1020  ---GTCGCT-AT--TTTT-TT--ATTGGT----ATGTGAT-GTATC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1021  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1022  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1023  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1024  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1025  ---GCGCTG-TA--TTTT-TT---ATTGGT---AGGTGAA-AGAC-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1026  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1027  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1028  ---GGCGTT-GT--TCTT-TC---AGTGAG---AGT-CAC----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1029  -AGACG---------CCA-GC---GGTGAC---T---------------T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1030  ---CGCGCT-AT--ATTT-TT--AATGGT----AGGTGAC-GTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1031  ---GCCG-TTGT--ACTT-TTA----GTCG---GAGTGAC-GTACT-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1032  ---GGCA-TTGT--GTTT-TTA----GTGG---GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1033  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1034  ---GCACTTT-T--TCTT-TCA---GTGGT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1035  ---GGCGCTA-T--TCTT----TCAGTGGT---AGGTGAC-GTACC-TGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1036  --------T-AT--CCTT-TC---AGTGGT---AGGCG----ACAT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1037  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1038  ---GGCG-TTGT--GCTT-TCA----GTGG---GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1039  -GTTGT---------GCT-TT---CAGTGG---GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1040  -----------------------------------------------CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1041  -TTATT---------TTT-TG---AGTGAT---AGGTAAT-GTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1042  ---GAACTT-GC--CCAC-AC--A-GGAA----GCCTCAT-ACTTG-GTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1043  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1044  ---GGCGCTA-T--GCTT----TCAGTGGT---AGGTGAT-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1045  AGT-------------------GGT--------AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1046  -CTATT---------CTT-TC---AGCGGT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1047  --TTGT---------GCT-TT---CAGTGG---GAGTGAT-G--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1048  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1049  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1050  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1051  ---GATAAT-AT--TCTT-CC---TGTGGT---AAATGA----TG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1052  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1053  ---------------------------------AGATGAC-GTACC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1054  -CTATT---------CTT-TG---AATGGT---AGGTGAT-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1055  -TTATA---------TCA-GT---CA-ACA---GCGAGGT-ATCTG-TGA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1056  ---GGCAGTA-T--TTTT-TCA---ATGGT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1057  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1058  --------------TCTT--T--AGTGCT----AGGTGAC-GTACT-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1059  ---TGAGCA-CT--GCAG-GG-----TTTA---ACCGAC----GAT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1060  ---GGCATT-GT--TCTT-TT---AGT-TG---GAGTAAC-GTACT-GAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1061  ---GGCGTT-GT--GTTT--T--CAGTGG----GAATGAC-GTATT-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1062  -CTTTG---------CTT-TC---AGTGGT---AGGTGAC-GTACT-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1063  ------GCC-AT--TCTT-TC---ACTGGT---ACTCTA----GT-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1064  ---GGCG-TTGT--GCTT-TCA----GTGG---GAGTGGC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1065  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1066  -----------------------------T---GGGTGAT-GTACC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1067  -TTATT---------CTT-TA---AGTGGT---AGGTAAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1068  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1069  ---GGCGCTT-T--GCTT----TCAGTGGT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1070  ---GGCGCT-AT--TATT-TC---AGTGAC---AGGTGAC-GTACG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1071  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1072  ---GACGCTA-T--CCTT-TCA---ATGGT---AGGTGAC-GTACC-TGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1073  ---GGCGTT-GT--GCTT--T--CAGTGG----GAGTGAC-GTACC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1074  ---AACGATA-T--TCTT-TCA---ATGGT---AAATGAT-GTACC-CCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1075  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1076  ---GGCGTT-GT--GCTT-TC--A-GTGG----GAGTGAC-GTACT-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1077  --------T-AT--ATTT-TC---AGTGGT---AGACG----ACGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1078  ---GGAG-TTGT--GCTT-TCA----GTGG---GTGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1079  ----------------TT-TC---GGTGAT---AGGTG----ACCT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1080  --------T-AT--TCAT-TC---AGTGGT---AGGTGA----CAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1081  ----------AT--TCTT-TC---AGTGGT---AGGTGA----CAT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1082  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1083  ---CGACACT-A--TTTT-TCA---ATGGT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1084  -CTATT---------ATT-TC---AGTGGT--------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1085  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1086  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1087  ---GACAAC-TA--T------------------------G----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1088  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1089  ------GCT-AT--TCTT-TC---GGTGGT---AGGTGAC-GT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1090  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1091  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1092  ---GGCTCT-AT--GTTT-TC--AGTGGT----ATGTGCC-GTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1093  ---AATGCT-AT--TTTT-TC---AGTGGT---ACGTGAC-ATAC-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1094  -CTATT---------CTT-TC---AGTGGT---AGGTGAC-GTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1095  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1096  ---GGTGCT-AT--TCTT-TC---AGTGGT---ATGTGAC-ATACC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1097  -TTATT--------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1098  ---GGCG-TTGT--GCTT-TTA----GTAG---GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1099  ---GGCGCT-AT--TCTT-TC--AGTGGT----GGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1100  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1101  ---GGCG-TTGT--GCTT-TCA----ATGT---AAATGAT-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1102  ---GGCGCT-AT--TCTT-TC--AGTGGT----AGGTGAC-GTACC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1103  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1104  -ATATT---------CTT-TC---AGTGGT---AGGTGAC-GTACC-TGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1105  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1106  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1107  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1108  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1109  ---GACG-TTGT--GTTT-TAA----TTGG---GAGTGAC-GTACA-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1110  ------------------------------------------TAGC-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1111  ---GGCG-TTGT--GTTT-TTA----GTGA--------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1112  TTTTGT---------GCT-TT---CAGTGC---GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1113  ---GGCGCCA-T--TCTT----TCAGTGGT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1114  ---AGCGCTA-T--TCTT----TCAGCGGT---AGGTGAT-GTAAC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1115  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1116  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1117  -TTATT---------TTT--------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1118  ---GGCGCTA-T--TCTT-TCG---GTGGT---AGGTGAC-GTATA-TAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1119  ---AGCGTTT-T--GATT-TCA---GTGGT---AGGTGAC-GTACT-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1120  ---AGCA-----------------------------------------TT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1121  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1122  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1123  ---GCCGCTA-T--TCTT----TCAGTGAT---AGGTGGG-ATACC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1124  ---AGCG-TTGT--GCTT-TCA----GTGG---GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1125  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1126  ---GGCG-TTGA--TCTT-TCA----ATGG---GAGTGAC-GTACC-TGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1127  -CTATT---------CTT-TT---AGTGGT---ACGTGAC-GTACC-CCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1128  --TTAT---------GTT-CT---CAGTGG--------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1129  ---GGCG-ATGT--TTTT-TCA----GTGG---AAGTGAT-GTATT-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1130  -TGTCT--------TTTA-GA---GA-TAT---TC------ATAAA-GGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1131  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1132  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1133  -CAATG---------TTT-T------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1134  -CTATT---------CTT-TC---AGTGGT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1135  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1136  ---GACGTT-GT--GCTT-TC--A-GTGG----GAGTGAC-GTATA-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1137  -------TT-TC---GGT-GC---GAG----------TGA-CGTAC-CCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1138  -----------------------------------------CGTACCCGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1139  -CTATG---------CTT-CC---AGTGAT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1140  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1141  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1142  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1143  ---GGGGTA-GG--TTGT-CC---GTGT----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1144  -------------------------GTGGA---AGAAGA----CGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1145  -TTATT---------CTT-TC---AGTAGT---AGGTGAT-GTAGT-CAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1146  ---GGCGCTA-T--TCTT-TCG---TATGT---G----AT-GTACT-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1147  ---GGCGCTA-T--TCTT----TCAGTGGT---ATGTGAT-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1148  ---GGCG-TTGT--GTTT-TCA----GTGG---GAGTGAC-GCATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1149  ---GGCGCTA-T--TCTT----TTAGTGAT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1150  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1151  -----------T--TCTT-TT---AGTGGT---GTACGA----TGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1152  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1153  -CTAAT---------TTT-TT---GATGGT---AGGTGAC-ATACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1154  ---GGCGCTA-T--TCTT-TTT---ATAAT---AGGTGAT-GTACC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1155  -AGTAA--------CGTA-CC---CA-T----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1156  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1157  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1158  -TGACT---------TTG-TC---AATCTC---TCAAAAT-ATACC-GGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1159  ---GGCGTT-GT--GCTT--T--CGGTGG----GAGTGAC-GTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1160  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1161  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1162  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1163  --------T-AT--CCTT-TT---AGTTGT---AAATGAC-GTGC-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1164  ---GGCG-TTGT--GCTT-TTA----GTGG---GAGTGAC-GTACC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1165  ---GACGTT-GT--GGTT--T--CAAAGC----GAGGGAT-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1166  ---CGCG-TTGT--GTTT-TCA----GTGG---GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1167  -GACGT--------TATT-CT---TT-GAG---ATGTATA-GGAGA-CTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1168  -----------------T-TC---AGTAAT---AAGTGAC-ATACG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1169  -GGCGT--------CTGT-GA---TG-ACT---TT------GTCCA-TC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1170  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1171  -TTATT---------TTT-TC---AGTGGT---AGATGAC-ATACC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1172  ---CGGCGG-TA--TTCT-TT--CAGTGG----TAGGTGA-GTATC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1173  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1174  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1175  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1176  -------------------------------------------ATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1177  ---GACGTT-GT--TATT------TCAGTA---GGGTGGC-GTACT-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1178  ---GGCGCTA-T--TCTT----TCAGTGGT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1179  -----------------------------------GCGTT-GTACC-TCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1180  ---GGCGTT-AT--TCTC-TC--AACAGT----AGGTGAA-GTATC-TAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1181  -AGTGT--------GTTT-TC---AA-TGA---GA------GAGAC-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1182  ---GGCACTA-T--TTTG----TCAGTGAT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1183  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1184  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1185  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1186  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1187  ---GGCATTG-T--TCTT-TCA---GTAGC---TCAGTCT-CTCGA-AGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1188  ---GAACCA-AC--ACAC-CC--AGTGGT----AGGTAAC-GTATC-TAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1189  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1190  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1191  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1192  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1193  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1194  ---GGTGCTA-T--TTTT----TCAGTGGT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1195  ---AGTC-TCCG--ACTT-GAC----ATGT---GAGTGAC-TTACC-TGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1196  ---GGCGCC-AT--TCTT-TC--AGGAAT----TGGTGAA-GTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1197  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1198  ---GGTGAT--T--TTAT-AG-----TCAA----AAGTA----ACG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1199  ---GACGCTA-T--TCTT-TCA---GTGGT---AGGTGAC-GTATT-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1200  -ATATT---------CTT-TC---AGTGGG---AGTGACG-GACCC-ATC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1201  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1202  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1203  -TTGTT---------TTT-TG---ATAGAA---ATGACGT-ACTCG-TCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1204  ------------------------GCGGTC---GGTGACA-TATCC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1205  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1206  -TGACT---------CTG-TC---AATCTC---TCAAGAC-CCGCC-GAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1207  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1208  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1209  -GGCGT--------TTTT-TT---CT-TTC---AC---TT-GGAGG-GAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1210  ---GGTG-TTGT--TCTT-TCA----GTGT---GAATGAC-GTACA-TGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1211  -TTGTT---------T-T-TC---AGTGGG---AATAACG--TACC-AGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1212  ---GACGCTA-T--TCTT----TCAGTGGT---AGGTGAC-ATATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1213  ---AGCGCTA-T--TTTG-TCA---GTGGT---AGGCGAC-CTGGA-TTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1214  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1215  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1216  -----------------------------------GTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1217  -CTTTT---------TTT-TC---GGTGGT---AAGTGGC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1218  ---G-------C--TCAT-CC---ATGTTC---AAGTCA----GG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1219  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1220  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1221  ---GACGCTG-T--TCTT-TCA---GTAGT---AGGTGGC-GTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1222  --------T-GACTTCGC-CA---ATCGCC---A----AT-CTCAA-GAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1223  AGT-------------------AGTGTGGT---AGATGAT-GTACC-TGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1224  ---GGCG-TTGT--GTTT-TTT----GTGG---GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1225  --------T-AC--CCTT-TC---AGTGGT---AGGTG----ACTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1226  ---GGCG-TTGT--GCTT-TCA----GTGG---GAGTGAC-GTACC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1227  ---AACAAT-ATATTTTT-AG---TGATAG---GTG---A----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1228  ---GACGGT-AT--TTTT-TC---AGTGCT---AGGTATG-ACGT-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1229  --CTGT---------TCT-TT---CTGTGG---GAGTGAC-GTATC-GGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1230  ---AGCG-TTGT--GCTT-TCA----GTGG---GAGTGAC-GTACC-TGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1231  ---GGCGTT-AT--TGTT-TG---T--GAT---AAATGAC-GTACC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1232  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1233  -CTATT---------CTT-TC---AGTGAC---AGGTG------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1234  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1235  ------GTT-AT--GTTT-CC---AATGGT---AGGTGAG-ATACA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1236  ---CCT--------GAAC-TT-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1237  -CTATT---------CTT-TC---AGTGGT---AGGTGAC-ATATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1238  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1239  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1240  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1241  ---GGCACTA-T--TCTT-TCA---GTAGT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1242  ---GGCGCTA-T--TCTT----TCAGTGGT---GGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1243  ---GGCA-TTGT--GCTT-TCA----GTGG---GAGTGAC-GTACT-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1244  ---GACGTTT-T--TCTT-TCA---GTGGT---AGGTGAC-GTACC-CGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1245  -TTTGT---------TCT-TT---AAATGG---AGGTGAC-GTATC-CGA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1246  ---GACGAT-AT--TCTT-TC---GTTGTT---AATGTA----TC-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1247  ---GGAG-TTGT--GTTT-TCA----GTGA---GAGTGAC-GTACC-AGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1248  ---GGCGATA-T--TTTT-TTA---GTGGT---AGGTGAC-GCACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1249  ---GGCGTT-AT--TTTT-TC---AATGAT---AGGTGAT-GAGC-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1250  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1251  --GTGT---------GAT-TT---CAGTG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1252  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1253  ---GACGCTA-T--TTTT-TCA---GTGGT---AGGTAAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1254  ---GACGCTA-T--TTTT-TCA---GTGGT---AGGTAAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1255  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1256  --------CA-C--ATTT----TCAGTGGT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1257  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1258  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1259  AGT-------------------GGT--------AGGTGAC-GTACT-TGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1260  ------------------------------------------------AT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1261  ---GGCGCTA-T--TCTT-TCA---GAGGT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1262  ---CCTGAA-TT--TATT-TC---AGGGCT---TGGTGTT-GTGTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1263  ---GGCTTT-GT--GTTT--T--CAGTGG----GAGTGAC-GTACC-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1264  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1265  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1266  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1267  -CTATT---------CTT-TC---AATGAT---AGATGAC-GTATC-CCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1268  ---GGCG-TTGA--GCTT-TCA----GTGG---GAGTGAC-ATACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1269  ---TGGCGT-TG--TGAT-TT---TAGTAG---GAGTGAC-ATACC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1270  ---GGCGCTT-T--TCTT----TCAGTGGT---AGGTGAC-GTAGC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1271  ---GGCG-TTGT--GCTT-TCA----GTGG---GAGTGAC-ATATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1272  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1273  ----TCT-T-TC---AGT-AG---TCG----------GTG-ATGAT-CTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1274  ---GGAGATA-T--TCTT-TTA---GTGGT---AGGTGAC-GTATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1275  -CTATT---------CTT-TT---AGTGGT---AGGT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1276  --------GG-C--GCTT----TAAGTGGA---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1277  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1278  -TTGTG---------CTT-TC---AATGAA---AGTGACG--TACC-TG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1279  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1280  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1281  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1282  ---CGGTGC-TA--TTCT-TC--AGTGGT----AGGTGGC-GTACC-CCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1283  -CTATT---------CAG-TG---GTAGGT---GACGTAT-----C-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1284  ---GTGTTT-TT--TCTT-TC---AGTGGT---AGGTGAC-GTAC-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1285  ---AGCG-TTCT--GTTT-TCA----GTGG---GAGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1286  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1287  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1288  ---GGCGTTA-T--TCTT-TCA---GTGGT---AGGTGAC-ATATC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1289  ------------------------------------------TTAA-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1290  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1291  -TGACT---------TCG-TC---AATCTC---TCAAGAT-CTGTC-GGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1292  --------T-AT--TTTT-TC---AGTGGT---AGACGAT-GTGT-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1293  ---GGCGCT-AT--TTTT-TT--AGTGGT----AGGTGAC-ATACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1294  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1295  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1296  ---GGCGTTA-T--TCTT-TCA---GTGGT---AGGCTGG-CTCAG-TCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1297  ---GACGGTA-T--TCTT-TTA---GTGGT---AGGTGAC-GTACT-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1298  ---GGCGAC-GT--TCTT-TC---AGTGTG---AGTGGCG-TGTCC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1299  ---AGCGTT-GT--GTTT-TC--A-GTGG----GAGTGGC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1300  ---TTCGCT-AT--TTTT-TC--AAAGGT----AGGTGAC-G-TAC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1301  -------------------------GTGGT---AAGTGAT-GTAC-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1302  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1303  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1304  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1305  ---GGCG-TTGC--------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1306  -CTATT---------TTT-TC---AGTGGT---AGGTGAC-GTACT-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1307  -----------------------AGTGGT----AGGTGAC-GTACC-TGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1308  ---GACACTA-G--TCTT-TTA---GTGGT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1309  ---GGTGTT-TC--CTTG-C----GGATGG---A---------ATG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1310  ----------AT--TCTT-TC---GG-TGG---TAGGTAA-ATTG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1311  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1312  ---TGAGCTA-T--TCTT-TCA---GTGGT---AGATGAC-GTACC-GTC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1313  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1314  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1315  -TTGTT---------CTT-TT---CA-TGA---GAGTGAC-GTATT-CTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1316  ---GGTGCTA-T--TCTT-TCA---GTGGT---AGGTGAC-GTACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1317  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1318  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1319  ---CAGCTT-GT--GCTT--T--CAGTGG----GAGTGAC-GTACT-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1320  -TTATT---------CTT-TC---AGTGAT---AGTTGGC-ATACC-CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1321  ---GGCGTT-GT--GATT-TT--A-GTGA----GAGTG------------

GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out0     -----------------------------------------CCGTC-AAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1     -T--------G-------------------------------T--T-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out2     CAAC---TACA-------------AGGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out3     CAAC---TACA-------------AGATGC---------C----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out4     ---------------------------------TGATGTATCCATC-AAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out5     --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out6     TAAC---TACG-------------AGGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out7     TAAC---AACG-------------AGACGCC------TAC----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out8     CAAC---TACG-------------AGACGCCT----GTGGTG-ACT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out9     CATC---AATC-------------T---CT---T-----G----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out10    CAAC---TAAC-------------GAGTCGCTCGT----------C-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out11    -AAC---TACG-------------AGACG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out12    --AC---AGCG-------------AGGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out13    CAAC---AACA-------------AGACGCCAGCGGTGACTTCGTC-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out14    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out15    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out16    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out17    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out18    -ACC---AATA-------------GT------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out19    GTAC-----------------------------------C----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out20    CAAT---C------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out21    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out22    CAAC---AATGA-------------GGCGCCTGCGGTGATTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out23    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out24    CAAC---AGCGA-------------GTCACATGCGGTGACTTCAT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out25    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out26    CAAC---TACG-------------AA-----GCGTCT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out27    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out28    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out29    CAAC---TACG-------------AG-----ACGCCT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out30    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out31    CAAC---AGCG-------------AGATA---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out32    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out33    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out34    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out35    CAAC-----TA-------------CGAGG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out36    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out37    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out38    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out39    -GTC---TATC-------------GAA---------------A----G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out40    AACA---ACGA-------------GATGCCTGC-AGTGACTTTTTC-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out41    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out42    C-------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out43    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out44    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out45    CAAC---AACGA-------------GGCGCCAGCGGTGACTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out46    CAAC---TACA-------------AGGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out47    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out48    CAAC---AGCG-------------AGACGTCTGCGGTGACTTCGTC-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out49    CAAC---AGCG-------------AGGCGTCAGCGGTGACTTTATC-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out50    CAAC---AGCG-------------AGGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out51    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out52    ATAA---ACTT-------------GATGGTATGTGATGTACCCGTC-AAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out53    CAAC---TATG-------------AT-----GCGCTT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out54    CAAC---TATG-------------AG-----ACGCCT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out55    CAAC---TACG-------------AG-----GCGTCTA------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out56    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out57    TAAC---AACG-------------AGGCACTG------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out58    CGAC---TACG-------------AAGTGTCTGTGATGACTTCGTC-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out59    -C--------G-------------------------------T--C-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out60    CAAT---AGGGA-------------GGCGCCTGCGGTGACTTCGT-CAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out61    -C--------G-------------------------------T--C-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out62    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out63    AACT---ACGA-------------GATGCCTATGGTCGGCTCAGT-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out64    -------GTCA-------------GAT---------------A----C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out65    CAAC---AGCG-------------AGGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out66    TAAC---TATG-------------AGGCGCATGTGGTG-----ACT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out67    CAAC---TACG-------------AGACG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out68    CAAC---CACG-------------AGGCGT---------C----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out69    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out70    CATT---AAAA-------------AAACGCTTGTGGTGACTTCGTC-AA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out71    -----------------------------------------CCGTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out72    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out73    -C--------C-------------------------------CTGC-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out74    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out75    ---------------------------------------CTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out76    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out77    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out78    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out79    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out80    CAAC---TACG-------------AG-----GCGCCT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out81    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out82    TCAA---CCTT-------------ATGATTTGTC---GCC----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out83    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out84    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out85    CAAC---TACG-------------AGACG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out86    -T--------G-------------------------------T--C-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out87    CAAC---TACG-------------AGGCACATGTGGCGTCAAGC------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out88    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out89    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out90    -G------------------------------------------TC-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out91    TAAC---GGCG-------------AGGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out92    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out93    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out94    ----------C-------------------------------CGCC-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out95    CAAC---TACG-------------A------GGCGCT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out96    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out97    -GCA---ACCG-------------TC----------------A----A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out98    CATC---AGCG-------------AGACGTCTAC---CGG----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out99    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out100   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out101   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out102   CAAT---TACG-------------AGGCGCATGCG---------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out103   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out104   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out105   CAAC---AGCAA-------------GACACCTGCGGTGACTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out106   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out107   -C--------G-------------------------------T--C-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out108   CAAC---AGCT-------------AGGCGTCTGCGTTGATTTC-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out109   TCAA-----------------------------------C----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out110   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out111   CAAC---TACG-------------AAGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out112   CAAT---TACA-------------AG-----GCGCCT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out113   CAAC---TACG-------------AAGCAC---------C----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out114   -TTC---TTTC-------------G-----------------A----T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out115   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out116   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out117   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out118   CAAT---TACA-------------AGGCAC---------A----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out119   CAAC---AGCGA-------------GGCGCATGCGGTGACTTGGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out120   CAAT---AGCG-------------AGGCGC---------C----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out121   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out122   -ACT---CATT-------------GAT---------------A----G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out123   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out124   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out125   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out126   CAAC---AGCGA-------------GGCACCTACGGTGACTTCAT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out127   CGTC---AACAACGAGACGCTTGTGGTGAGATCTGTCGGTTTG-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out128   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out129   -C--------G-------------------------------T--C-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out130   AAAC---AGGC-------------GTCTGCC------GGC----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out131   CAAC---TATA-------------AGGTTTCTATGATGATTTC-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out132   CAAC---TACG-------------AG-----GCGCTT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out133   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out134   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out135   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out136   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out137   CAAC---TACG-------------AGGCGTCTGTAGTGATTTC-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out138   CAAT---CTCT-------------C-----------------AAG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out139   CAAC---TACG-------------AGGCGTTTGTGATGATTTCGTG-AA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out140   -T--------G-------------------------------T--T-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out141   ACGC---TTTT-------------GGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out142   CAAC---TACG-------------AG-----GCGCCT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out143   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out144   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out145   -AAC---TGTC-------------AATGCCAGGGCTGCTACTCTTT-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out146   CAAC---AGCGA-------------GGCGCCTGTGGACTCAATCT-CTCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out147   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out148   CAAC---AGCGA-------------GGCGCTAGGGGTGACTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out149   -ATC---CGTC-------------AA------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out150   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out151   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out152   TAAC---CACA-------------ATACGCTTATGGTGATTTTG------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out153   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out154   ------------------------------------------------TT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out155   -------------------------------------------GG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out156   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out157   CAAC---AGCG-------------AGGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out158   CAAC---TATG-------------AGACGTCTGTAGTGACTTTG------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out159   CAAC---TACG-------------AGGCGCAT----GTGGTG-ACT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out160   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out161   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out162   -AAT---TGTA-------------AA------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out163   CAAC---AGCGA-------------GGCGTCTGCGGTGACTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out164   CAAC---AGCGA-------------GGCGCCTGCGGTGACTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out165   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out166   CAAC---AACG-------------AGAGGCCAACGATGACTTCGT-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out167   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out168   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out169   CAAC---TACG-------------AG-----GCGCCT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out170   CAAC---TACA-------------AGATG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out171   CAAC---AACG-------------AAGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out172   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out173   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out174   CAAC---AGCG-------------AGACGCTTTTGGTAACTTC-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out175   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out176   TGAT---GTAT-------------CCGTCAATGTGGTGACTTCGTC-AA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out177   -ATA---GCCG-------------AT----------------A----A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out178   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out179   -A------------------------------------------TT-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out180   ACCG---AAAT-------------CCTCATTATT---TCG----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out181   CAAT---AGCG-------------AGATGCTTGTGCACGT----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out182   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out183   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out184   -----------------------------------------TCTCA-ACA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out185   CAAC---AGCC-------------AG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out186   -TAG---CCTT-------------CA----------------A----C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out187   GCGA---GGGA-------------GATGCTC------ATA----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out188   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out189   CAAC---AGCGA-------------GGCGCCTGTGGTGACTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out190   CAAC---TACG-------------AG-----GCGTCT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out191   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out192   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out193   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out194   -C--------G-------------------------------T--C-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out195   -C--------C-------------------------------TGTT-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out196   -----------------------------------------------A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out197   CAAC---TACG-------------AA-------A---CAC----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out198   CAAC---AACA-------------AGACG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out199   CAAC---AGCGA-------------GGCACCGGCGGTGACTTCGT-AAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out200   CAAC---TATG-------------AGGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out201   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out202   -ACC---CATC-------------AAC---------------A----A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out203   CAAC---TAAA-------------ATGTG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out204   ---------------------------------TGATGTAGCCGTT-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out205   -CCT---GTCA-------------ACA---------------G----T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out206   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out207   CAAC---AGCGA-------------GGTGCCTGCGGTGACTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out208   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out209   GCAC---TA-----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out210   CATC---AGTGA-------------GGCGCCTGTGGTGACTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out211   AAAC---AGCA-------------TACGAGTCG-----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out212   ---------------------------------TGATTGTTCCATC-AAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out213   CAAT---AGTGA-------------GGCGCATGCTGTGACTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out214   -C--------G-------------------------------T--C-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out215   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out216   TAGG---GTGT-------------GCGTGTGTGCGTTCATAGGGTG-AGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out217   CAAT---TACG-------------AGGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out218   -C--------G-------------------------------TCGA-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out219   TA------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out220   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out221   CAAC---AGCAA-------------GGCGCCTGCAGTGACTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out222   -ACC---CATC-------------GAA---------------A----G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out223   GC------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out224   TAAC---AGTG-------------AGGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out225   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out226   -T--------G---------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out227   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out228   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out229   CAAC---AGCG-------------AGGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out230   CAAC---ATGG-------------AGGCACATGCGGTGACTTCATC-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out231   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out232   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out233   -GTA---CCCA-------------TC----------------A----A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out234   CAAC---TATG-------------AGAGG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out235   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out236   CAAC---AACG-------------AGGCAC---------C----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out237   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out238   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out239   -------AGCG-------------AGACG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out240   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out241   -T--------G-------------------------------T--C-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out242   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out243   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out244   CAAC---AACG-------------AGGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out245   CAAC---AACG-------------AGACCTCTAA---ATA----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out246   CAAC---AGCG-------------AGGCGCCTGT---GAT----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out247   -G--------G-------------------------------T--T-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out248   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out249   TCAA-----------------------------------C----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out250   CAAC---TATG-------------AGGTGCATGTGATAATTTTGTC-AA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out251   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out252   AAGT---GATG-------------TATCC---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out253   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out254   CAAC---TACG-------------AG-----ACGTCT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out255   CAAC---TACG-------------AGCTGT---------C----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out256   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out257   ----------------------------------ACAGTATTCGTC-AAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out258   ----------------------------G---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out259   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out260   -A--------G-------------------------------T--C-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out261   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out262   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out263   CAAC---AGCGA-------------GCCGCCTGCGGTGACTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out264   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out265   TT------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out266   CTAG---ATTG-------------AGGCA---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out267   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out268   CAAT---AGCG-------------TGACTT---------C----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out269   TAAC---ATTG-------------CACGA----------G----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out270   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out271   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out272   CAAC---TACG-------------AGGCGGCGGTGGTG-----ACT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out273   -----------------------------------------CCGTC-AAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out274   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out275   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out276   CAAT---AACG-------------AGGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out277   -C--------A-------------------------------T--C-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out278   AAAA---GCGG-------------ACACG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out279   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out280   CAAC---AGCG-------------AGTCGC---------C----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out281   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out282   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out283   CAAC---TACG-------------AGACG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out284   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out285   CAAC---TACG-------------AG-----GGGCAT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out286   -------AGCG-------------AGGCA---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out287   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out288   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out289   ----------C-------------------------------TGTC-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out290   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out291   CAAC---AACGA-------------AGCGCCAGCGGTGACTTCCT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out292   CTCT---AGGA-------------AGTGCTCATA---GGG----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out293   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out294   GCGC---T------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out295   -GTC---CAT--------------------------------T----A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out296   CAAC---AACT-------------AGGCACACGTGGTAACTTC-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out297   CAAC---TACG-------------AG-----GCGCCT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out298   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out299   -C--------G-------------------------------T--C-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out300   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out301   CAAC---AGCG-------------AGGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out302   CAAC---AGCAA-------------GACGTCTGCGTTGACTTAGT-TAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out303   TA------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out304   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out305   -CTA---CCCG-------------CC----------------A----A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out306   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out307   CAAC---AACG-------------AGCCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out308   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out309   --AC---AGCG-------------AGGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out310   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out311   CAAC---AATG---------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out312   CAAA---CTAC-------------TAGGAAGATG---ATC----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out313   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out314   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out315   CAAC---AGCG-------------AGACG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out316   CGAC---GGCG-------------AGGCTTCGTCAATCTTTCAAG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out317   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out318   --------------------------GCGT---------C----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out319   TAAC---AGCGA-------------TGCGCTTGCGGTGACTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out320   ---------------------------CGCCTGCGGTAATTTC-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out321   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out322   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out323   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out324   -C--------C-------------------------------T--T-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out325   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out326   CAAC---T-AC-------------GAGAC---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out327   ATGA-----------------------------------G----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out328   CAAC---AACG-------------AGATGACTGTGATAACTTCGTC-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out329   CAAC---TACG-------------AGACG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out330   CCAC---ATCG-------------AGACG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out331   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out332   ----------C-------------------------------CGTC-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out333   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out334   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out335   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out336   CAAC---TACG-------------AG-----GCGCAT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out337   ---------------------------------GTGGTTTAGTGTC-AAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out338   C-------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out339   CAAC---TACG-------------AG-----GCGCCT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out340   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out341   CAAC---AGCT-------------GTGCGTGTGT---GCG----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out342   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out343   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out344   CAAA---TACG-------------AGACGCTTGCGGTGACTTCGTC-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out345   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out346   CAAC---TACG-------------AGACA----------T----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out347   CAAC---TACG-------------AGGCGAGGCACCT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out348   CAAC---TACG-------------AG-----GCGCAT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out349   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out350   CAAC---AACGA-------------GGCGCTTGCGGTGACTTCCA---AT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out351   CAAC---TACA-------------AG-----GCGCCT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out352   -GTT---TATC-------------ATT---------------A----G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out353   ACCC---ATCA-------------ACAGCGAGTTATTTGT----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out354   CAAC---TACG-------------AT--ACGAGG---CCC----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out355   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out356   CAAC---TACG-------------AGACG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out357   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out358   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out359   ATGC---TACT-------------TT------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out360   ---------------------------------TTGCA-----ATG-ACT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out361   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out362   CAAC---TATG-------------ATGCATTTATGGTAACTTCGTC-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out363   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out364   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out365   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out366   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out367   TCAG---TCT----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out368   -AGT---ACCT-------------GT----------------C----A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out369   -T--------G-------------------------------T--C-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out370   -ACT---CGCC-------------AA------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out371   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out372   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out373   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out374   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out375   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out376   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out377   CAAT---TACG-------------AG-----GCGCCT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out378   -GTT---TGTC-------------GAT---------------A----G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out379   ---------------------------------ATAACTTACCCTT-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out380   -----------------------------------------TCGTC-AAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out381   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out382   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out383   CAAC---AGCGA-------------GACGCCTGAGGTGAGTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out384   C--------------------------------A---AAG----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out385   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out386   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out387   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out388   ---------------------------CCGTTAAAATGATTTCGTC-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out389   CGAG---AC------------------------------G----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out390   TAAC---AGTG-------------AGACGTCTGCAGTGACTTCAAT-TAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out391   CAAC---AACGA-------------GGCGCCTGCGGTGACTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out392   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out393   -----------------------------------GAGTGGGAGTG-GCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out394   CAAC---AACGA-------------GGCGCTTGCGGTGATTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out395   CAAC---TACG-------------AG-----ACGCTT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out396   ----------T-------------------------------CCAT-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out397   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out398   CAAC---TACG-------------AGACGCAT----GTGGTG-ACT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out399   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out400   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out401   -C--------A-------------------------------T--C-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out402   CAAC---AGCG-------------AGGCGCCCACGATGACTTC-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out403   CAAC---AGCG-------------AGACG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out404   CAAC---TACG-------------AGACACCT----GCGGTG-ACT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out405   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out406   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out407   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out408   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out409   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out410   CAAC---AGCG-------------AGGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out411   -----------------------------------------ACACC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out412   CAAC---TACG-------------AGAGGCGCAT---GCG----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out413   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out414   CAAC---AACG-------------AGAT------AATCTCTCAAG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out415   -----------------------------------------CCGTC-AAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out416   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out417   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out418   CAAC---AACGA-------------GGCGCTTGTGGTGACTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out419   -C------------------------------------------AC-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out420   CAAC---TATG-------------GGGTG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out421   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out422   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out423   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out424   CAAC---TACG-------------AGGCGCGTGTTGTG-----AGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out425   CAAC---CAAG-------------AGGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out426   CAAT---AACG-------------AGGCG----------C----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out427   TT-A---GC-----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out428   CAAC---AACGA-------------GGCATCTGCACTGACTTCGA-CATG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out429   CAAC---TACG-------------AT-------G---TGT----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out430   AACC---AATA-------------AGGTTCCT----GTGGTG-ACT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out431   CAAC---TATG-------------AGGCCC-TGTGGTG-----ACT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out432   -------------------------------------------GTC-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out433   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out434   CAAC---TATG-------------TGGCG----------C----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out435   -ATC---AATA-------------GTT---------------A----G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out436   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out437   CAAC---AATG-------------AGGCG----------T----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out438   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out439   CAAT---AGCG-------------AGACG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out440   -------CGTC-------------AA------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out441   CAAC---AGCGA-------------GGCGCCTGCAGTGATTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out442   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out443   CAAC---AGCGA-------------GACGTCTGCGGTGACCTCAT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out444   CAAC---TACG-------------AGACGTCT----GTGGTG-ATT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out445   CAAC---TACG-------------AGACG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out446   CAAC---TACG-------------AGACGCATGTGGTGATTTCATC-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out447   -T--------G-------------------------------T--C-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out448   CAAC---TACG-------------AGGTGCCTGTGATGATTT--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out449   CCCG---ACTC-------------AGTCTCTCGGAGGTGCTC--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out450   CAAC---TACG-------------AG-----GCGCAT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out451   CAAC---TACG-------------AG-----GCGCCT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out452   -TAC---CTGT-------------GT----------------T----A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out453   CAAC---TACA-------------AGTTGCATGTGGTGACTTCGTC-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out454   G-------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out455   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out456   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out457   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out458   CAAC---AGCGA-------------GGCGCCTGCGGTGACTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out459   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out460   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out461   CAAC---AGCA-------------AGACG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out462   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out463   CAAC---TACG-------------AGGCGTCTGTGGTGATTTCA------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out464   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out465   ACGA-----------------------------------G----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out466   TAAC---TACG-------------ACACGTGT----GTGGTG-ACT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out467   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out468   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out469   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out470   CAACAACAGGG-------------AGGCA---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out471   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out472   CAAG---AACTC--------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out473   ATCA---GTCT--------------CTCGGAGGG----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out474   -C--------G-------------------------------T--C-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out475   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out476   CAAC---AACG-------------AGACG----------C----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out477   C-------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out478   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out479   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out480   ---------------------------CCGTC------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out481   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out482   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out483   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out484   CAAC---TTAG-------------AGGCGTTTAT---GAT----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out485   TCAA---CAGC-------------GAGCTT--------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out486   CAAC---AGCGA-------------GGTGCCAGCGGTGACTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out487   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out488   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out489   -ACC---CATG-------------GAC---------------A----G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out490   CAAC---TACG-------------AGTCATCTGTAGTGATTTCGTC-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out491   CAAC---AGCG-------------AGGCGTCTGCGATGACTTCGTC-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out492   CAAC---TACG-------------AGACG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out493   -ACT---CATC-------------AAC---------------A----G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out494   -GT---------------------------------------------AC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out495   CAAC---AGC----------------------GAGGCGACTTCGTC-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out496   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out497   CAAC---AGCGA-------------GGCGACAGCGGTGACTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out498   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out499   CAAC---AGCGA-------------GGCGCCTGCGGTGACTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out500   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out501   -------------------------------------------GGT-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out502   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out503   CAAC---TATG-------------AGGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out504   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out505   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out506   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out507   AA-C---AACG-------------AGGC----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out508   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out509   -C--------G-------------------------------G--T-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out510   CAAC---AACG-------------AAGCGCCTGCGATGACTTC-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out511   -CCA---CGTT-------------TG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out512   CAAC---AGCG-------------AGGCGT---------C----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out513   CAAC---TACG-------------AGGCGTCTGCGGTCACTTCGTT-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out514   CAAC---AGCG-------------AGACA----------C----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out515   CAAC---AGCGA-------------GATGTCTGCGGTGATTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out516   ---C---GTAT-------------CCGTTCCTATGATGATTTCAT-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out517   -A------------------------------------------TC-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out518   --------------------------GTG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out519   CAAC---TGCGA-------------GGCGGCTGTGGTGACTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out520   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out521   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out522   CAGC---TATG-------------AGGGG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out523   TAAC---AACG-------------AGACATCTATGTTGACTTC-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out524   CAAC---AGCG-------------AGGCA---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out525   CTAT---TTTT-------------TCGGGG---------G----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out526   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out527   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out528   CAAC---TACG-------------AGGCGCATGTGGTG-----ACT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out529   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out530   CAAC---TACG-------------AGGTGC---------T----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out531   CAAC---AACG-------------AGGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out532   GGCT---TAGT-------------CTTTCGGAG-----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out533   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out534   CAAC---AAGG-------------AGACGCATGTGGTGACTTCGTC-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out535   TAAC---AGCG-------------ATGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out536   --CA-----------------------------------G----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out537   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out538   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out539   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out540   GATC---AACA-------------GTCAACAGCG---AGA----G-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out541   -GTT---CAAC-------------AA----------------T----T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out542   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out543   -TTC---CGTC-------------AAT---------------A----G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out544   CAAC---TACG-------------AGGCACC-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out545   CAAC---TACG-------------AG-------A---CGC----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out546   CAAC---AGCGA-------------GGCGCCTGCGGTGACTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out547   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out548   CAAC---TACG-------------AGACGC---------G----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out549   CAAC---TACG-------------AG-----GCGCCT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out550   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out551   -----------------------------------------TCGTC-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out552   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out553   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out554   CAAC---AGCG-------------AGGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out555   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out556   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out557   CAAC---TACG-------------AGGCGCCTGTGGTGACTTGACT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out558   CAAC---TACG-------------AAACA---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out559   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out560   CAAC---TATG-------------AACC----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out561   CAAC---TACG-------------AAACGCATGTGGTG-----GAT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out562   CAAC---TATG-------------AGGTG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out563   ----------C-------------------------------CGTC-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out564   -C--------G-------------------------------T--C-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out565   CAAC---AGCG-------------AGGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out566   CAAC---AACGA-------------GGCGTCTACGGTGACTTCGT-TAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out567   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out568   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out569   CAAC---TACG-------------AGGCACC-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out570   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out571   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out572   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out573   CAAC---TACG-------------AGGCA---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out574   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out575   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out576   TATT---TTCG-------------AGTGGCGTCG---TTG----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out577   CAAC---TACG-------------AGCCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out578   -C--------A-------------------------------T--C-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out579   CAA-----------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out580   CAAC---TATG-------------AGTGA---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out581   ---------------------------------------T----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out582   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out583   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out584   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out585   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out586   -----------------------------------------CCGTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out587   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out588   CAAC---AGCG-------------AGACG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out589   A--C---AGTG-------------AGACG----------T----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out590   CAAC---AACGA-------------GGCGCCTGCGGTGACTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out591   CAAC---GGCGA-------------GGCGCCAGCGGTAACTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out592   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out593   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out594   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out595   CAAC---TACG-------------AGACG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out596   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out597   CAAC---TACG-------------AT-----GCGTTT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out598   CAAC---TACG-------------AGGCGTTT----GTGATG-ACT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out599   CAAC---AGCG-------------AGACGCCTGCGATGATTTC-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out600   CAAC---AGCG-------------AGGTG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out601   CAAC---AACG-------------AGACGCCTACGGTGACTTCGTC-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out602   CAAC---TACA-------------AGACGCTT----GTGGTG-ACT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out603   CAAC---TACG-------------AGACG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out604   -T--------G-------------------------------T--C-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out605   CAAC---AGCGA-------------GACGTTTGTGGTGACTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out606   GCCG---ACCC-------------GAT---------------TCAG-TCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out607   TAAC---AACGA-------------GG--CTAGCGGTGACTTCAT-CAAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out608   -ACT---CATT-------------AAC---------------A----A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out609   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out610   CAAT---TATG-------------AGACG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out611   CAAT---AGCCA-------------GGCCCCTGCGGTGACGTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out612   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out613   CAAC---AAAG-------------AAACGTCTGCGGTGACTTC-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out614   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out615   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out616   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out617   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out618   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out619   -ACT---CGTT-------------GAC---------------A----G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out620   CAAC---AGCGA-------------GACGCCTACCGTGACTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out621   CAAT---ACCG-------------AGGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out622   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out623   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out624   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out625   CAAC---TACG-------------AGGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out626   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out627   ---------------------------------TGATTTACCCATC-AAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out628   ---------------------------------TGACGTACCC-A-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out629   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out630   TGAC---AACG-------------AGGCGT---------C----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out631   C-------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out632   CAAC---TACG-------------AGACG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out633   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out634   -C--------A-------------------------------T--C-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out635   --------------------------------------TACCCATC-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out636   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out637   -T--------G-------------------------------T--C-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out638   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out639   --------TTT-------------------------------AATG-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out640   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out641   CAGC---AGCGA-------------GACGTCTGAGGTGACCTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out642   CAAC---AACGA-----------GAGACGCCAGCGGTGACTTCAT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out643   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out644   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out645   CAAC---TACG-------------AGACG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out646   CAAT---AGCG-------------AGACGTCGGCGATGACTTCGTC-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out647   -CCA---GATA-------------GAT---------------A----G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out648   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out649   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out650   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out651   AACA---A-CG-------------AGACGC---------A----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out652   GACT---GGT----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out653   -C--------G-------------------------------TCTA-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out654   CAAC---TACG-------------AGACGC---------C----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out655   TAAC---TATG-------------AGGTG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out656   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out657   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out658   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out659   CAAG---GCGC-------------CAACAG---------T----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out660   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out661   CAAC---TACG-------------CG-------G---TGC----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out662   CTTA---TAAA-------------ACCGGT-GTT-----T----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out663   CAAC---TACG-------------AGACGCATGTGGGGTGAT--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out664   -A--------G-------------------------------T--C-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out665   -----------------------------------------TCGTT-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out666   CAAC---AGTG-------------AGGCACCTGTGGTGATTTCGT-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out667   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out668   -GTC---AACA-------------A-------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out669   CAAC---TACG-------------AGGCGTCTGT---GGA----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out670   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out671   CAAC---AGCA-------------AGGTGTCTGTGGTGACTTCGTC-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out672   CAAC---AGCAA-------------GACGCCTGTCAAGAGC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out673   -C--------G-------------------------------T--C-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out674   CAAC---TACG-------------AGACG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out675   CAAC---TACA-------------AG-------G---CGC----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out676   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out677   CAAC---AGTG-------------AGATGCACGCCGCTCAGTCTCT-CGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out678   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out679   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out680   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out681   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out682   CAAG---AGCGA-------------GGCGCAAGCGGTGACTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out683   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out684   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out685   CACG---GTTT-------------AATCGG---------T----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out686   CAAC---TACG-------------AGACG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out687   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out688   CAAC---AACGA-------------GGCGCCTGCGGTGACTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out689   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out690   AATT---ACAA-------------GGCGTTT-------GT----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out691   CAAC---TACG-------------AGTCGTCTGTGGTGACTTCATC-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out692   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out693   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out694   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out695   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out696   -T--------G-------------------------------T--C-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out697   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out698   TGCG---ACTG-------------TGATGTGCCGGACCAGTCTCTCGAAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out699   CAAC---TACG-------------AG-----ACGCAT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out700   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out701   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out702   ---C---TACG-------------AGACGCCATGGT-GATG---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out703   -GTA---TCCG-------------TC----------------A----A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out704   CAAT---AGCGA-------------GGCGTCTGTGGTGATTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out705   -ATC---TGAT-------------AAA---------------G----A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out706   ------------------------AATGGCAGGTGACGTACCGTTA-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out707   -AAC---AGCG-------------GGATG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out708   CAAC---AGCGA-------------GGCGCATGCGGTGACTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out709   CAAC---TACG-------------ATGCGCATGTGTGACTT-CGTC-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out710   GCAC---TATT-------------CT------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out711   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out712   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out713   CAAC---TACG-------------AGGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out714   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out715   CA------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out716   CAAC---AGCG-------------AGACGCCAGCAGTGACTTCGTC-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out717   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out718   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out719   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out720   CAAC---TACG-------------AGGCGC---------A----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out721   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out722   -ACT---CTTC-------------ATC---------------C----A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out723   ----------C-------------------------------CATA-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out724   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out725   CAAC---TACG-------------AG-----GCGCCT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out726   CAAC---TATG-------------AGGCGTTG------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out727   CAAC---TACG-------------AGGCGCC-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out728   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out729   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out730   CAAT---TGCG-------------AGACG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out731   CAAC---TACG-------------AGGTGCAT----GTGGTG-AAT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out732   -TAC----------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out733   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out734   CAAC---TACG-------------AG-----GCGCCT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out735   TAAC---AGCG-------------AGGCGC---------C----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out736   -------------------------------------------GTG-ACG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out737   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out738   CACG---ATCT-------------GATGAA---------T----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out739   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out740   ----------T-------------------------------CGTT-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out741   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out742   CAAC---AGCG-------------AGACACTCGT----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out743   CAAC---AGCG-------------AGGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out744   CAAC---AGCG-------------AGACGCTGGCGATGACTTCGTA-AGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out745   CAAC---TACG-------------AGTCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out746   ----------C-------------AAT---------------A----A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out747   GTGC---TATT-------------CTTTTT---------A----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out748   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out749   ---------CG-------------AAGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out750   CAAC---TACA-------------AGGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out751   CAAC---AACG-------------AGACG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out752   TAAC---TACA-------------AG-----ACGCCTA------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out753   CAAC---AGCG-------------AG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out754   CAAT---AACG-------------AGTAG----------C----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out755   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out756   CAAC---TACG-------------AGGCGCCT----GTGGTG-ACT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out757   CAAC---AACGA-------------GGCGTTTGCGGTGACTTCCGTTAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out758   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out759   CAAC---AGCGA-------------GACGCCTGCGGTGACTTCAT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out760   CAAC---AGCGA-------------GGCACCAGTGGTGACTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out761   CAAT---TACG-------------AG-------A---CGT----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out762   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out763   CAAC---TATG-------------AG-------G---CGT----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out764   CAAT---TACG-------------AGGCACGTGTGGTGACTTCATC-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out765   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out766   -TT---------------------------------------------AT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out767   -ACG---CTTT-------------CAGTACAGGTGACGTATCCATT-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out768   CAAC---TACG-------------AG-----GCGCCT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out769   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out770   CAAC---TACG-------------AGGCGCATGTGATG-----ACT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out771   -TCT---TTCG-------------GAAGTGACTCCGTCAATCTCTC-AAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out772   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out773   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out774   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out775   CAAC---TACA-------------AGACGT---------C----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out776   CAAC---TACA-------------AG-----ACGTCT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out777   -C--------A-------------------------------T--C-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out778   CAAC---CACG-------------AGGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out779   -C--------G-------------------------------T--C-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out780   -C--------G-------------------------------T--T-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out781   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out782   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out783   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out784   CAAC---AACG-------------AGACGCCTGCAATGACTTCATA-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out785   GAAC---TACG-------------AG-------G---CGT----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out786   AAAC---AGGG-------------AGGCATATGCGGTAACTTCGTC-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out787   CAAC---AGCG-------------AGGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out788   CTCA---TAGG----------------------G-----G----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out789   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out790   CAAC---AGCG-------------AGGCGTCAGCGGTGACTTCATC-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out791   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out792   -----------------------------------ACGTACCCGTT-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out793   CAAT---TACG-------------A-----GACGCCT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out794   CAAT---TACG-------------AGGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out795   CAAC---AGCG-------------AGGCACGTGTGGGGACTTCATC-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out796   -ATT---TTTA-------------CA------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out797   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out798   CAAC---TACG-------------AG-----ACGCCT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out799   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out800   CAAC---AACGA-------------GGCGCCAACGGTGACTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out801   -----------------------------------------TCATC-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out802   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out803   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out804   -C--------G-------------------------------T--C-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out805   --------------------------GTGCCTGTGGTGATTTC-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out806   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out807   CAAC---AGCGA-------------GGCGCCAGCGGTGACTTCGT-AAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out808   CAAC---AACG-------------AGGCGCCAGCGGTGATTTTGTC-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out809   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out810   CAAC---AACGA-------------GGCGCCTACGGTGACTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out811   -T--------G-------------------------------T--C-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out812   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out813   CAAC---TATG-------------AGGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out814   --AC---TAGA-------------CA----------------T----A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out815   -ACC---TGTT-------------GCT---------------A----G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out816   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out817   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out818   -C--------G-------------------------------T--A-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out819   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out820   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out821   CAAC---AGCG-------------AGGCGTCTGCGGTGACTTCGTC-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out822   CAAC---AGCGA-------------GACGCATGCGGTGACTTCGT-AAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out823   CAAC---TAC----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out824   CAAC---TACG-------------AG-----TCTCAT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out825   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out826   TAAC---AGTT-------------CATAGGGGTG---AGT----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out827   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out828   CAAC---TAGG-------------AGGCGCCTGTGGTG-----ACT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out829   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out830   CAAC---TACG-------------AGACG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out831   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out832   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out833   CAGT---T------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out834   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out835   CAAC---AGC----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out836   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out837   CAAC---AGCG-------------AGTCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out838   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out839   TAAC---AGCG-------------AGACGCCAGCGGTGACTTCGTC-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out840   CAAC---TACG-------------AAGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out841   CAAC---AGCG-------------AGGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out842   CAAC---TACG-------------AG-----ACGACT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out843   --CG-----------------------------------T----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out844   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out845   GACG---AAGA-------------GACCCT---T-----G----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out846   CAAC---GGCGA-------------GACGTCTGTGCTGACTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out847   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out848   CAAA---AGCGA-------------GGCGCCTACGGTGACTTCGC-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out849   TAAC---TACG-------------AG-----GCGTCT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out850   -GTC---GATA-------------TAT---------------A----A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out851   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out852   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out853   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out854   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out855   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out856   GAAT---AGCG-------------AGGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out857   CAAT---AGCG-------------A-------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out858   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out859   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out860   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out861   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out862   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out863   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out864   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out865   GTTC---ATAG-------------GGGTGAGTGTACGCACGTTGT-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out866   CGTG---TGTT--------------CATAG--------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out867   ACCA-----------------------------------T----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out868   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out869   ------------------------------------------AGGT-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out870   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out871   CAAC---TACG-------------AG-----GCGCTT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out872   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out873   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out874   --------GCC-------------------------------CCTC-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out875   CAAC---TACG-------------AGGCGCATGTGATGACTTTG------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out876   CAAC---TACG-------------AG-----GTGTCT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out877   CAAC---TACG-------------AG-----GCGCCT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out878   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out879   -AAC---TGAC-------------A-----------------A----C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out880   CGAG----------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out881   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out882   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out883   -TCA---GGTT-------------TG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out884   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out885   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out886   -----------------------------------------------A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out887   AACT---ACGA-------------GGCGTCT-------GT----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out888   CAAC---AATG-------------AGACGC---------C----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out889   CAAC---TACG-------------AGGCGCC-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out890   CAAC---TACG-------------AGACTT---------C----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out891   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out892   GAGC---AGGA-------------CCTAACCGGC----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out893   -T--------G-------------------------------T--C-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out894   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out895   TAAC---AACG-------------AGGCG----------T----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out896   CAAA---AACG-------------AAACG----------T----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out897   CCAC---TGCG-------------A-------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out898   CAAC---AATA-------------AGTCGTATGTGGTGACTTCATC-GAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out899   CAAC---CGCG-------------AGGCTTCGTC---GGT----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out900   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out901   CAAC---TACT-------------AGGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out902   CAAC---AACG-------------AGGCGTCTGG---GGT----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out903   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out904   CAAC---AGCG-------------AGGCGTCTTCGGTAACTTAGTC-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out905   CAAC---TACG-------------AGAGGTATGT---TCA----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out906   CAAC---AGCG-------------AGGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out907   CAAC----------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out908   -----------------------------------------CTGCC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out909   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out910   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out911   -ATC---CTTC-------------A-----------------A----C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out912   -A--------T-------------------------------T--C-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out913   CAAC---TACG-------------AGACGT---------T----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out914   CAAC---AGCGA-------------GGTGTCTGCGGTTAATTTCGTCAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out915   CAAC---AGCG-------------AGACG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out916   CAAC---TACA-------------TGTGCCGG------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out917   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out918   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out919   -ATC---TATC-------------AA----------------C----A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out920   CAAC---TACG-------------AGGTGCCT----ATGGTG-ACT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out921   -----------------------------------------CCCGT-C--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out922   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out923   CAAC---AACA-------------GTCTTT---------C----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out924   CAAC---AACG-------------AGGCAC---------C----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out925   CAAC---AACG-------------AGACG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out926   CAAC---TGCG-------------AG-------G---TGT----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out927   CAAC---TACG-------------AG-----GCGCCT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out928   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out929   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out930   CAAC---TACG-------------AG-----GCGCCT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out931   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out932   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out933   CAAT---TACG-------------AG-----CCGTCT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out934   AACA---TCGA-------------GTCGCATGTGTGACT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out935   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out936   -C--------G-------------------------------T--C-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out937   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out938   -GCA---TGTC-------------GAT---------------A-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out939   CAAC---AGCG-------------AGACG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out940   CAAC---TACG-------------AGATACCTGTGGTG-----ATT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out941   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out942   CAAT---CGTC-------------AATCTCAAGATCATGCCTGCTC-AGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out943   TATT---TCAG-------------AATTT---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out944   GCTA---CAAA--------------ATCTCTGTG----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out945   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out946   CAAC---AGCG-------------AGGCGC---------C----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out947   -G--------T-------------------------------C--T-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out948   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out949   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out950   CAAC---AACG-------------AGGTGTCTGCAG--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out951   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out952   CAAC---AGCAA-------------GGCGCCTGCAATGATTTCGC-TAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out953   CAAC---AGCG-------------AGGCGCCTGCGAGGGCTTCGTC-GAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out954   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out955   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out956   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out957   -GTC---CGAC-------------ACA-----------------GC-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out958   CAAC---AGCG-------------AGGCA----------C----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out959   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out960   CAAC---AGCA-------------AGGCT---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out961   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out962   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out963   CAAC---TACG-------------AG-----ACGCCT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out964   ATCC---GTTA-------------AAACT---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out965   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out966   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out967   CAAC---AGCA-------------AGGTGC---------C----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out968   AGGG---TGAG-------------CGTCTGC------GTT----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out969   CAAC---AGCG-------------AGGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out970   CAAC---AGCG-------------ATGCGC---------C----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out971   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out972   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out973   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out974   CTAC---AACG-------------AGGCGCCTGCGGTGATTTCGTC-ACT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out975   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out976   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out977   ---------------------------------GTGATTAGGGGTC-ATA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out978   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out979   -C--------A-------------------------------T--C-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out980   CAAC---TACG-------------AG-----TCGTCA-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out981   --------CAG-------------CGAGA---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out982   GCCG---CCTG-------------C-------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out983   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out984   -----------------------------------GTGATTTCGTC-AA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out985   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out986   CAAC---TACG-------------AG-----ACGCCT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out987   ------------------------AGACG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out988   CAAC---AGCGA-------------GGCGCCAGCGGTGACTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out989   CAAC---TACG-------------AGGCA---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out990   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out991   ---C---GGCT-------------CAGTTTCTCATATGTGC---C-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out992   CGGT---GGCT-------------CAGTCTC-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out993   CAAC---TACG-------------AGGTGC-TGTGGTG-----ACT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out994   CAAC---TACG-------------AG-----GTGCCT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out995   TAAC---TACG-------------AGACT---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out996   CAAC---TAGG-------------AG-----TCACCT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out997   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out998   CAAC---AGCAA-------------GGCGTCTGCGGTGACTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out999   CAAC---TACG-------------AAACG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1000  CAAC---AATGA-------------GCCGCCAGCGGTGACTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1001  -C--------G-------------------------------T--C-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1002  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1003  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1004  -------------------------GGCGC---------T----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1005  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1006  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1007  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1008  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1009  -TG-----CTC-------------GA----------------T----A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1010  CAAC---AGTGAAGCGTGTGTGTGTTCATTGGGTTG--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1011  ------------------------AGGTG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1012  -----------------------------------GTGGTGATTTC-ATC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1013  ---------CA-------------AGGCA---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1014  -----------------------------------------CCGTC-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1015  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1016  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1017  ---------CA-------------AGATGT-GCG-----T----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1018  AATT---GCAT-------------GATGTCT-------GT----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1019  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1020  CAAC---AGCA-------------AAGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1021  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1022  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1023  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1024  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1025  ----------C-------------------------------CGTT-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1026  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1027  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1028  ---------------------------------ATACGC----ATC-AGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1029  CGTT---AATC-------------T---AT---C-----A----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1030  TAAC---AGCG-------------AGATG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1031  CAAC---TATA-------------AGGCG--TGTGTCATCAATA------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1032  CAAC---TACG-------------AG-----ACGCTT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1033  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1034  CAAT---AGCG-------------AGGCGTCAGCGGAGACTTCGTC-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1035  CAAC---AGCGA-------------GGTGCCTGCGGTAACTCCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1036  -ACC---TATT-------------GCT---------------A----G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1037  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1038  CAAC---TACG-------------GGTGCC-TGTGATG-----ACT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1039  CAAC---TACG-------------AG-------G---CGC----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1040  CAAT---TACG-------------AGTCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1041  CAAC---AGTG-------------AGGCA----------C----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1042  TGGA---TACG-------------AGACG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1043  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1044  TAAC---AGCGA-------------GGCGCCTGCGGTGACTTCAT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1045  CAAC---AGCG--------------AGTGCCTGTGGTGATTTCGT-CGAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1046  CCAC---AGCG-------------AGGCGC---------T----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1047  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1048  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1049  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1050  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1051  -TAG---TCAA-------------T-----------------G----G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1052  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1053  GAAC---GGTG---------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1054  CAAC---AGTG-------------ATGCGCC------AGC----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1055  CGAG---TT-----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1056  CAAC---AGCG-------------AGGCGCCTGCGATGACTTCGTC-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1057  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1058  CAAC---AACG-------------AAGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1059  -GTC---CTTT-------------TAGTGTGAGTGATGCACCAACT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1060  CAAT---TACG-------------AGACGTTTACGATGACTTCACT-AA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1061  CAAC---TACG-------------AGGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1062  CAAC---AGTA-------------AGGCGTCTAT---GTG----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1063  -AGA---TGAT-------------G-----------------T----G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1064  CGAC---TACG-------------AGGC------GCC-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1065  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1066  -C--------A-------------------------------T--C-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1067  CAAC---AGCG-------------AGGCG----------C----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1068  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1069  CAAC---AGCGA-------------GGCGCCTGCGGTGACTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1070  -A--------G-------------------------------A--A-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1071  ----------------------------G---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1072  CAAC---AACA-------------AGACGCCAGCGGTGACTTCGTC-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1073  CAAC---TACG-------------AGGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1074  AAAC---AACG-------------AGAAACTTGTGATGACTTTCTC-AAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1075  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1076  CAAC---TACG-------------AGGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1077  -ACC---GTTC-------------GAT---------------A----G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1078  CAAC---TACG-------------AG-----GCGCAT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1079  -AAC---TGTG-------------TCC---------------C----G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1080  -TCC---CATC-------------GAT---------------A----A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1081  -TCC---CATC-------------GAT---------------A----A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1082  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1083  CAAC---AACG-------------AAACGCCTATTGTGA-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1084  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1085  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1086  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1087  -------------------------------------------GTG-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1088  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1089  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1090  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1091  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1092  CAAC---GGTG-------------AAGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1093  ----------C-------------------------------AGTC-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1094  CAAC---AGTG-------------AGACG----------C----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1095  TTCA---AGAT-------------GTAAC---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1096  -C--------G-------------------------------T--C-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1097  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1098  CAAC---TACG-------------AG-----GCGCCT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1099  CAAC---AGCG-------------AGGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1100  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1101  CAAC---TACG-------------AG-----GCGCTT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1102  CAAC---AGCG-------------AGGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1103  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1104  CAAT---AGCG-------------AGGCG----------C----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1105  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1106  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1107  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1108  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1109  CAAC---TACG-------------AGCCGTCTGTGGTGACTGTCTT-CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1110  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1111  ----------G-------------AGTGACGCATGG-----TGACT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1112  CAAC---TACG-------------AGACGC---------C----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1113  CAAC---AACGA-------------GGCGCCAGCGGTGAATTTGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1114  CAAC---AGCGA-------------GACGTCTGCGGTGACTTCGT-CGAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1115  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1116  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1117  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1118  CT-G---TC-----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1119  CAAC---AACG-------------AAGCGTCTGTGGTGACTTTGTC-GAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1120  GTGC---TACG-------------AGGCGCCTACGGTAACTT-CGC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1121  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1122  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1123  CAAC---AGCGA-------------CGCACCTGCGGTGACTTCGT-CAAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1124  AAAC---TACG-------------AG-----GCGCCT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1125  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1126  CAAC---TACG-------------AGGCGGCTGTGATGACTTCGTC-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1127  CAA-----------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1128  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1129  CAAG---TACG-------------AGACGCTT----ACGGCG-ACT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1130  AGAG-----------------------------------T----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1131  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1132  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1133  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1134  C-------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1135  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1136  CAAC---TACG-------------AGGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1137  TCAA---TTCA-------------TGGCGCATGTGGTGAGTTCGTC-AA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1138  CAAC---TACG-------------A-----GACGCAT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1139  CAAC---AGCG-------------AGACGCC------TGT----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1140  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1141  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1142  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1143  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1144  -ACC---AATC-------------AAC---------------A----A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1145  TAAC---GAGG-------------TGTCTG---------C----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1146  CAAC---AGCG-------------AGGCACCTGCGGTGACTTC-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1147  CAAC---AGCGA-------------GGCGCCTACGGTGACTTCGT-CGAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1148  CAAC---TACG-------------AG-----GCGCCT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1149  CAAC---AGCGA-------------GACGCAAGAGATGACTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1150  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1151  -ATT---CATC-------------AAC---------------A----A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1152  ---------CG-------------AAGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1153  CAAC---AGCG-------------AAGTGACGAA-----G----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1154  CAAC---AACG-------------AAGGGCCCGGTCTCTCGGA-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1155  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1156  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1157  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1158  TCAG---TCT----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1159  CAAC---TACT-------------AGACGCCTA-----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1160  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1161  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1162  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1163  ----------T-------------------------------CGTC-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1164  CAAC---TATG-------------AG-----GTGCCT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1165  CAAG---TACA-------------AGACG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1166  CAAC---TACG-------------AG-----ACGCCT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1167  GTGC-----------------------------------C----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1168  -T--------G-------------------------------T--T-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1169  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1170  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1171  CAAC---AGCA-------------TAGGGGTAGG---GGT----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1172  CAAC---AGCG-------------AGACG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1173  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1174  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1175  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1176  CAAC---AGCG-------------AGGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1177  CAAT---TGCG-------------AGACGTCTTCGGTGACTTCGTC-GA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1178  CAAC---AGCGA-------------GGCGCCTGCGGTGACTTCGT-C-AT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1179  CAAC---TACG-------------A-------GG---CGC----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1180  TCGC---AACG-------------AAGTG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1181  --CA-----------------------------------C----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1182  CAAC---AGCGA-------------GCCGACTGTGGTGAGTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1183  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1184  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1185  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1186  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1187  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1188  CAGC---AGCG-------------AAGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1189  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1190  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1191  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1192  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1193  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1194  CAAC---AGCGA-------------GACGTCTGCGGTGACTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1195  CAAC---TACG-------------AGGCGTCT----ATGGTG-ACT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1196  CAAC-----AG-------------AGGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1197  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1198  -TAC---TCAT-------------CG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1199  CA-A---CA-----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1200  AACT---ACGA-------------GCCTCCTGTG---GGT----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1201  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1202  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1203  GAA-----------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1204  -G------------------------------------------TC-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1205  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1206  CCGG---CTCA-------------G------------GGG----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1207  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1208  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1209  GTAC-----------------------------------C----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1210  CAAC---TACG-------------AAGCGTCTGTAGTGATTTCGTC-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1211  CAAT---A------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1212  CAAC---AGCGA-------------GGGGCATGCGGTGACTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1213  AACC---GGCGCTTGTCAATAGTGAGGCGCCTGCGTTGACATC-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1214  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1215  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1216  CAAC---TACA-------------AGGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1217  C-------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1218  -CTT---GACG-------------CT----------------T----G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1219  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1220  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1221  CAAC---ACCG-------------AGTCATCAGCGGTGACTTTGTC-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1222  AATT---AATC-------------TGTC----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1223  TAAC---GGCGA-------------GATGTCTGTGGCGACTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1224  CAAC---TACG-------------AG-----GCGCCT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1225  -ACC---TGTC-------------GCT---------------A----G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1226  CAAC---TATG-------------AAGCGCC-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1227  ------------------------------------CGTATCATTC-AAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1228  ----------T-------------------------------TCTA-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1229  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1230  CAAC---TATG-------------AGGCGCTT----GTGGTG-ACT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1231  -C--------G-------------------------------T--T-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1232  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1233  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1234  -------------------------------------------GTC-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1235  -G--------T----------------------------------C-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1236  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1237  CAA-----------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1238  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1239  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1240  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1241  CAAC---AACG-------------AGTC------GTCA------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1242  CAAC---AGCGA-------------GGCGCCTGCGGTGACTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1243  CAAC---TACG-------------AG-----GCGCGT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1244  CAAC---AGCG-------------AGACGTTTGCGCTGACTTCATC-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1245  CAAC---TACA-------------AGACA----------C----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1246  -CGT---CAAC-------------AA----------------T----T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1247  CAAC---TACG-------------AGACGTCTGTGGTG-----ATT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1248  CAAC---GACA-------------AGACGCCTGCGGTGATTTC-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1249  ----------C-------------------------------TATC-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1250  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1251  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1252  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1253  CAAC---TGCG-------------AAGCGCCTACGATGACTTC-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1254  CAAC---TGCG-------------AAGCGCCTACGATGACTTC-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1255  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1256  CAAC---AGCGA-------------GGCGCCTGCGATGACTTCGC-CAGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1257  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1258  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1259  CAAC---AGCGA-------------GGCGCCTGTGGTGACTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1260  CAAC---TACG-------------AG-------G---CGC----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1261  CAAC---AGCG-------------AGACGTCTGCAGTGACTTCGTC-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1262  -TTC---AGTA-------------GGATC----------AACTACG-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1263  CAAT---TATG-------------AAGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1264  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1265  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1266  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1267  CGAC---AACG-------------AGGCGT---------C----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1268  CAAC---TACG-------------AG-----GTGCCT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1269  -T--------G-------------------------------T--C-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1270  CAAC---AACGA-------------GACGTCAGTGGTGACTTCGT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1271  CAAC---TACG-------------AGGCGCAT----GTGGTG-ACT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1272  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1273  TGAC---AGTG-------------AGACGTCTGTGGTGATTTCGTC-AA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1274  CAAC---AACA-------------AGGCACATGTGGTAACTTC-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1275  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1276  CAAC---AGCGA-------------AGCGCCTGCGGTGACTTCAT-CAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1277  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1278  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1279  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1280  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1281  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1282  CAAC---AGCG-------------AGGTG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1283  CAAC---AGTG-------------AGGGGTT------TGC----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1284  ----------C-------------------------------TGTC-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1285  CAAC---TACG-------------AA-----ACGTCT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1286  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1287  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1288  CAAC---ACA--------------AGGCGCATGCAGTGACTTCGTC-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1289  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1290  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1291  CAAT---CTTT-------------CGGAGG---------T----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1292  ----------C-------------------------------CGTC-T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1293  CAAT---AGCG-------------AGGTG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1294  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1295  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1296  TT-C---GA-----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1297  CAAC---AGCA-------------AGGTGCCTGCAGTGATTTCGTC-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1298  -GTC---AACT-------------------------------ACGA-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1299  CAAC---TACG-------------AAGCG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1300  CCAC---AGCG-------------AGGTG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1301  ----------C-------------------------------TGTC-G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1302  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1303  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1304  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1305  --GA---GGCG-------------CCTGTGG-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1306  TAAC---AACG-------------AGACGT---------C----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1307  TAAC---AACG-------------AGACG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1308  CAAC---AGCG-------------AGACGCCTGCGGCGACTTCGTC-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1309  -ATG---TACC-------------------------------TGTT-A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1310  -----------------------------------------CCC------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1311  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1312  AACA---ACGA-------------GGC-------GGTGACTTCGCC-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1313  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1314  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1315  CAAC---GAGT----------------------A-----G----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1316  CAAC---AACG-------------AGGCCCCAGCAGTGACTTCGTT-AAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1317  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1318  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1319  CAAC---TACG-------------AGACG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1320  CAAC---AATC-------------GGCTCG---------G----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1321  -ACA---TACC-------------TTTCA---------------------

GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out0     CACGA-----------------GAT--------GCTTT----AGGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1     ---------ACAATGAGGTGCTAGC--------AATGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out2     --------------------TCTGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out3     ----------------------TGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out4     AA-----------GGAGACTCTTAC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out5     -------------GTTCGCAT-TTT--------CTGGA----TTTA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out6     --------------------CCTAC--------GTTGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out7     ---------------------------------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out8     --------------------------------------------TG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out9     ----------------------AGA--------TCTGC----CGGC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out10    CTCAAGATG-----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out11    --------------------TTTGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out12    --------------------CCAGT--------GATGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out13    C-----------TCTCAA------AATCTGTCGGC---------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out14    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out15    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out16    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out17    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out18    ----------GAGATGTATGCCTAT--------AATGA----CTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out19    ------------------------G--------ACTTA----ATTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out20    --------------------------------------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out21    ----------------------------------GGTG----ACTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out22    C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out23    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out24    C-----------TCTT----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out25    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out26    -------------------------------GTGGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out27    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out28    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out29    -------------------------------GTGGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out30    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out31    --------------------TCTGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out32    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out33    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out34    -----------------------------------TGA----CTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out35    --------------------CCTGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out36    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out37    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out38    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out39    ---------CGAGG----CATTAGT--------GGCGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out40    C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out41    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out42    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out43    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out44    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out45    C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out46    --------------------TCTGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out47    ---------------------------------GATGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out48    C-----------TCTTAAGATCTACCGG----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out49    C-----------CCTTAA------AACCTGCCGGGTGA----CTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out50    --------------------CCAGC--------GGTAA----CTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out51    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out52    ------------ATGAGCCACCTAT--------GGTGA----C-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out53    -------------------------------GTGGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out54    -------------------------------GTGGTGA----CTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out55    -------------------------------ATGGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out56    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out57    -------------------GTTTGT--------GGTGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out58    TCCAA-AATCCTGCCGGCTGGTGGT--------TGTTT----CATC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out59    ---------ACAGCAAGACGCATGC--------GGTGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out60    C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out61    ---------ACCACGAGATACCGGT--------GGAGA----TTCC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out62    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out63    -------------------TCCTGT--------GATGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out64    ---------TGAGG----CATCAGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out65    --------------------TTTGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out66    --------------------------------------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out67    --------------------TCTGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out68    ----------------------TGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out69    ------------------------C--------AATGA----CT------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out70    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out71    -G-------ATAGCGAGACGG---------------------CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out72    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out73    ---------ACAATGAGTC--------------GCCGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out74    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out75    C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out76    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out77    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out78    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out79    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out80    -------------------------------ATGATGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out81    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out82    ---------------------------------TCCTT----CTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out83    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out84    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out85    --------------------CCTGT--------GTTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out86    ---------ACTACGAGGCGCCTGT--------GGTGA----CTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out87    --------------------------------------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out88    ----------------------------CTTGTGGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out89    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out90    ---------ACAGCGAAGTGCCTGC--------GGTGA----CTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out91    --------------------TCTGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out92    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out93    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out94    ---------ATAAGGAGACCCCAAC--------TGTGA----TTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out95    -------------------------------GTGGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out96    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out97    ---------CTACAAGGTGTTTGTG--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out98    ---------------------------------CTCAT----TCTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out99    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out100   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out101   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out102   ---------------------------CCATGCGGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out103   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out104   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out105   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out106   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out107   ---------ACTATGAT--------------------------TTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out108   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out109   ------------------------C--------ATG--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out110   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out111   --------------------TCTGT--------CGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out112   -------------------------------GCGGTGA----CTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out113   ----------------------TAT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out114   ---------TGTATGTGACATA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out115   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out116   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out117   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out118   ----------------------TGT--------G----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out119   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out120   ----------------------TGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out121   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out122   ---------TGAGG----CACCAAT--------GATGA----CTTG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out123   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out124   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out125   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out126   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out127   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out128   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out129   ---------ACTACGAGACGCCTGT--------GGTGA----CTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out130   ---------------------------------TCAGT----TTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out131   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out132   -------------------------------GTAGTGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out133   --------------------------------------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out134   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out135   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out136   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out137   --------------------------------------------GT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out138   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out139   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out140   ---------ATAGAGAGACACTAGC--------GTTGA----CTTG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out141   ------------------------------------GA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out142   -------------------------------GTGGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out143   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out144   --------------------------------------------GT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out145   ---------TCTAGATGAGTCGTCT--------ACAGA----GTCT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out146   G-----------AGGT----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out147   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out148   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out149   ----------TTCCGAAATGTCTGT--------ACTGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out150   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out151   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out152   --------------------------------------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out153   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out154   A-----------TTTCAGGATTTAACCGGCGGCGGTGA----CTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out155   ----------CAGCGAGATGTCAGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out156   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out157   --------------------CCAGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out158   --------------------------------------------CC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out159   --------------------------------------------TT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out160   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out161   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out162   ----------CAGCGAGACGTCTAT--------GATGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out163   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out164   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out165   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out166   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out167   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out168   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out169   -------------------------------GTGGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out170   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out171   --------------------ACTGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out172   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out173   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out174   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out175   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out176   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out177   ---------CTAGAGGTGCATGTGA----------TAA----TTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out178   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out179   ---------ATGATGAGACGTCTGT--------AGTGA----CT------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out180   ---------------------------------GAAGC----CTCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out181   ---------------------------------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out182   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out183   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out184   ------------ACGAAACGCCTGT--------GGTA-----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out185   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out186   ---------ACCGA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out187   ---------------------------------TGGGT----AGAT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out188   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out189   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out190   -------------------------------GTGGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out191   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out192   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out193   ------------------------C--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out194   ---------ACTACGAGACGCCTGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out195   ---------ATAGCGAGGTGCTTCT--------AGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out196   ---------ACAGCGAGACGTGTGC--------GGTGA----ATTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out197   --------------------T-TAT--------GGTGA----CCTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out198   --------------------CCAAC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out199   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out200   --------------------GTTGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out201   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out202   ---------CGAGA----CGACGGC--------AGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out203   --------------------CATGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out204   AA-----------TGAGCCGCATGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out205   ---------GAGGG----TGCAAGT--------GGTGA----CTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out206   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out207   C-----------TCTG----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out208   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out209   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out210   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out211   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out212   AA-----------CGAGACGTCTGG--------GGTGA----CTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out213   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out214   ---------ATAGCGAGTAACCATC--------CGTGC----GTAC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out215   -------------------------------------------TTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out216   A-----------TACACGCATGTTATGATCGTTTGCGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out217   --------------------CATGT--------GGTGA----CTAC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out218   ---------AGAGCCTAC-CAATAT--------TGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out219   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out220   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out221   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out222   ---------TGAAG----CGTTGAT--------GGAGA----CTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out223   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out224   --------------------CTAGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out225   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out226   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out227   ------------------------T--------AGCTA----CGAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out228   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out229   --------------------CCAGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out230   C-----------TATC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out231   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out232   --------------------------------------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out233   ---------CAACAAAATGAT---------------TG----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out234   --------------------TCTGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out235   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out236   ----------------------TGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out237   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out238   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out239   --------------------CCTGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out240   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out241   ---------ACTACGAGATGCATGT--------GGTGA----CTCT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out242   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out243   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out244   --------------------CCTGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out245   ---------------------------------TACTT----GTGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out246   ---------------------------------TGGTA----GGGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out247   ---------ATAGCAGGCTCGCAC---------AGTGA----CGTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out248   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out249   ------------------------A--------AAACG----AGGC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out250   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out251   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out252   --------------------GTCAA--------CAAAA----CATT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out253   -------------------------------------------TAC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out254   -------------------------------GCGGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out255   ----------------------TGT--------GTTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out256   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out257   AGCGAGACGCGAGCGTTGATTTCGT--------CAATC----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out258   --------------------CCTAT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out259   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out260   ---------ACAGCGAGACACTTGC--------GATGA----TCTA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out261   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out262   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out263   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out264   ----------------TGGGCCTAT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out265   -------------------------------------------GGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out266   --------------------TCTAC--------GGTGA----CTTCC---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out267   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out268   ----------------------GTC--------AATCT----CTTA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out269   --------------------A-CGT--------CTGTGATGATTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out270   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out271   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out272   --------------------------------------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out273   -A-------ATGACAAGACGCACGT--------GGTGA----CAAT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out274   ------------------------T--------GATGT----ATCC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out275   ------------------------T--------AGGTG----ATGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out276   --------------------CATAC--------GGTGA----TTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out277   ---------ATAGCAAGGTACCGAT--------GGAGA----CTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out278   --------------------CTTGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out279   ---------------------------------GTGGC----GACT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out280   ----------------------TGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out281   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out282   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out283   --------------------CCTGT--------GGTAA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out284   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out285   -------------------------------GTGGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out286   --------------------CCTGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out287   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out288   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out289   ---------ATCACAAAGTGTTGAT--------GGTGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out290   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out291   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out292   ---------------------------------GTAGA----GTGC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out293   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out294   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out295   ---------ACTACGAGGCGGCCGT--------GCTGA----TTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out296   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out297   -------------------------------GTGGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out298   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out299   ---------ACGACGAGACGTCAAT--------GATGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out300   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out301   --------------------CCTGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out302   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out303   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out304   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out305   ---------TAACGA--GAGCATGT--------ACTGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out306   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out307   --------------------TCAGC--------GGTGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out308   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out309   --------------------CCTAC--------GGTGA----CTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out310   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out311   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out312   --------------------AACCG--------GTGTT----GTGC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out313   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out314   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out315   --------------------CCTGC--------AGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out316   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out317   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out318   ----------------------TGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out319   G-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out320   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out321   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out322   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out323   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out324   ---------ACATCAAGCCGCCTAT--------GGCGA----ATTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out325   -------------------------------------------ATT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out326   --------------------GCATG--------TGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out327   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out328   C-----------TCTCAAGACCTGTTGA----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out329   --------------------CCTGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out330   --------------------CCTGT--------AGCGA----CTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out331   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out332   ---------ATAGCGAGATGCGTGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out333   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out334   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out335   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out336   -------------------------------GTGGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out337   AA-----------CGAGACGTCTAT--------AGTGA----CTT-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out338   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out339   -------------------------------GTGCTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out340   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out341   ---------------------------------TTCAT----AGGG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out342   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out343   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out344   TTCAAGATGTT---------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out345   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out346   --------------------C-TGC--------GGTGA----CCTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out347   -------------------------------GTGGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out348   -------------------------------GTAGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out349   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out350   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out351   -------------------------------GTGGTGA----CTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out352   ---------TGAGG----TGTCTGC--------GGTGA----CATC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out353   ---------------------------------GATGA----CTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out354   --------------------A-TGT--------GGTGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out355   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out356   --------------------TCCAT--------AGTGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out357   ---------------------------------GGTGA----CT------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out358   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out359   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out360   T-------------------CGTCA--------ATCTC----TCA-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out361   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out362   CTCAATGTCCTCTATGT---------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out363   -------------------------------------A----CTAT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out364   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out365   ---------------------------------------------T----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out366   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out367   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out368   ---------ACAACGAGGTGTTTGT--------GGTAA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out369   ---------ACAACGAGCGCAT-AT--------GATGG----CATC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out370   ----------CTACGAGACGTTTTT--------GATGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out371   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out372   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out373   -------------TGTCACATTTTT--------CCTGC----ATTA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out374   -----------------------------------A------CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out375   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out376   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out377   -------------------------------GTGGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out378   ---------CGAGA----CACTTGT--------GGTG-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out379   CA-----------ATC----TCTCA--------ATATC----AGC-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out380   TA-------TGTACGAATTGTCCGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out381   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out382   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out383   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out384   --------------------C-TGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out385   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out386   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out387   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out388   CACTA-----AATCCATCGGCTCAA--------TCTGT----CACA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out389   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out390   C-----------TCTAAAGATCTGCCGG----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out391   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out392   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out393   TA-----------CCCGACACATGT--------GATGA----CTT-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out394   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out395   -------------------------------GTGGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out396   ---------AACACGAGACGTCTGC--------GATGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out397   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out398   --------------------------------------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out399   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out400   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out401   ---------ACTATGAGATGTATGC--------AATGA------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out402   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out403   --------------------ACTGC--------GGTAA----CTTA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out404   --------------------------------------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out405   ------------------------C--------AGGTG----ATGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out406   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out407   ------------------CACCTAT--------GTTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out408   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out409   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out410   --------------------CCTAC--------GGTGA----TTTCGATC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out411   -G-------CGAGCGAGACACATGT--------GTTGA----CTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out412   --------------------CCTGT--------GATGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out413   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out414   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out415   TA-------CATACGAGGCGTCTAT--------GATGA----GTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out416   --------------------CTGTG--------ATGAT----TTTG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out417   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out418   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out419   ---------ATTACGAGACGACTGT--------GGTGA----TT------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out420   --------------------CCTGT--------GTTGA----CTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out421   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out422   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out423   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out424   --------------------------------------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out425   --------------------CGTGT--------GCTAA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out426   --------------------A-TGT--------GGTGA----TTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out427   ---------------------------------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out428   A-----------TCTG----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out429   --------------------G-TGT--------GCTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out430   --------------------------------------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out431   --------------------------------------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out432   C-------------------TCAAG--------ATGGT----CTG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out433   -----------TACGAGACACCTGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out434   --------------------C-TTT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out435   ---------GCAGCAGTGCTGTCTA--------CTTGA----CTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out436   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out437   --------------------C-CAT--------GTTGA----TTCT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out438   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out439   --------------------CCTGC--------GGTGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out440   ----------CAACGAAATATCTAT--------GATGA----TTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out441   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out442   -------------------------------------------ACA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out443   C-----------TTTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out444   --------------------------------------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out445   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out446   C-------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out447   ---------ACAGCGAGGCGCCAGC--------GATGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out448   ---------CTTACGAGGTGCCTGT--------GGTGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out449   ------------------------AT------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out450   -------------------------------GTGGTGC----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out451   -------------------------------GTGGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out452   ---------ACAGCGAGGCGTCTGC--------GATGC----CTAC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out453   TTCAAGATGATCGGCCGGTGGCTCAGTCCTTGTAGGAA----TAGG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out454   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out455   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out456   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out457   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out458   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out459   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out460   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out461   --------------------CCAGC--------GGTAA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out462   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out463   --------------------------------------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out464   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out465   ------------------------T--------CAC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out466   --------------------------------------------TT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out467   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out468   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out469   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out470   --------------------TCTGT--------GGTGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out471   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out472   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out473   ----------------------------------TGCT----CATA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out474   ---------ACAGCGAGATGCATAT--------GGTGA----TTCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out475   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out476   --------------------T-CTG--------CGGTG---ACTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out477   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out478   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out479   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out480   ----------AAATAAGAGACGTCT--------TTCGT----GACT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out481   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out482   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out483   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out484   --------------------G---------------------GATC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out485   ---------------------------------------------C----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out486   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out487   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out488   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out489   ---------CGAGA----CGTTAGT--------GGCGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out490   TTCAAGATGATCTGTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out491   C-----------TCTCAGTCTATCAGAG----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out492   --------------------TCTGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out493   ---------CAAGA----TGCCCGT--------GAAGA----CTTA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out494   T-----------CGTCAATAGCGAGACGTCAACGGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out495   T-----------TCACAA------GATCTGCCGGC---------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out496   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out497   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out498   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out499   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out500   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out501   ---------ACGTACCCGCGCCTGC--------TGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out502   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out503   --------------------CCTGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out504   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out505   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out506   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out507   ---------------------------GTCGGCGGTTA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out508   -------------TGTCACATTTCT--------CTGAA----TT-A----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out509   ---------ACTACGAGTCGCCTCT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out510   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out511   ----------ACGC---------------------ACT----GTGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out512   ----------------------TGC--------AGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out513   CTCAAGATGAT---------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out514   --------------------C-TGT--------GATGG----ATTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out515   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out516   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out517   ---------ACAGCGAGCCATTTGT--------GATGA----CT------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out518   --------------------TTTGT--------GATGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out519   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out520   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out521   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out522   --------------------TCTGT--------GATAA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out523   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out524   --------------------CCAGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out525   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out526   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out527   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out528   --------------------------------------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out529   -------------------------------------A----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out530   ----------------------TGT--------GGTG-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out531   --------------------CCAAC--------GGTGT----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out532   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out533   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out534   C-----------TCTCAAGACCTGACTC----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out535   --------------------TCTGT--------GATGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out536   ------------------------T--------CTC------TCAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out537   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out538   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out539   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out540   -------------------GCCTGT--------GATGA----TTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out541   ---------ATACA----CGTAAAT--------AGTAA----GTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out542   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out543   ---------CGAGA----CACCTTG--------CTGAC----TTTG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out544   ------------------------------TGCGGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out545   --------------------C-TGT--------GGTGC----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out546   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out547   ------------------------------------GG----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out548   ----------------------TGT--------GGTGA----CTTA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out549   -------------------------------GCGACGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out550   -------------------------------------------TTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out551   ---------ACTACGAGGCGTATGT--------GGTGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out552   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out553   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out554   --------------------TCTGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out555   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out556   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out557   --------------------------------------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out558   --------------------TTTGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out559   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out560   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out561   --------------------------------------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out562   --------------------TCTGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out563   ---------ACAACGAGGCGTCTGC--------GGTGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out564   ---------AAAGCGAGGCGCATGC--------GATAA----CGTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out565   --------------------TCAAC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out566   A-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out567   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out568   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out569   ------------------------------TGCGGTGA----CTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out570   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out571   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out572   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out573   --------------------CATGT--------GGTGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out574   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out575   --------------------CTTAT--------GGTGA----CT------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out576   --------------------CCTAT--------GATGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out577   --------------------CCTGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out578   ---------ACTACAAAGCACCTAT--------TGTGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out579   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out580   --------------------CGTGT--------TGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out581   --------------------T-TAA--------TCTAA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out582   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out583   ----------------------------------TTCG----TAAT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out584   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out585   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out586   -A-------ATTACGAGACGTATGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out587   -----------------------GT--------GATGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out588   --------------------TTTGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out589   --------------------T-TGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out590   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out591   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out592   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out593   -----------------CGAGGTGT--------CCGCG----GTGC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out594   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out595   --------------------TCTGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out596   ----------------CACAGCGAGGCGATTGCCGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out597   -------------------------------ATGGTGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out598   --------------------------------------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out599   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out600   --------------------TCTGC--------GGTGA----ATTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out601   C-----------TCTA----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out602   --------------------------------------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out603   --------------------TCTGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out604   ---------ATAACGAGACGCCTAT--------GATAA----TTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out605   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out606   T-----------TCGAAAGTGCTCATAA----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out607   T-----------TCTT----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out608   ---------CGAGA----CACACAT--------GATGA----ATTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out609   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out610   --------------------CCTGT--------GGTGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out611   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out612   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out613   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out614   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out615   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out616   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out617   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out618   -------------GTTCACATGTTT--------TTGGA----TTTA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out619   ---------AGAGT----CGTCCGT--------GGTGA----CAAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out620   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out621   --------------------CCTGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out622   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out623   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out624   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out625   --------------------CCTGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out626   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out627   AA-----------CCAGGTGTTTAT--------AGTCA----CTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out628   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out629   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out630   ----------------------TGC--------AGTGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out631   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out632   --------------------TATGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out633   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out634   ---------ACTACGACGTGCACAT--------AGTAA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out635   AA-----------CAAGACGTTTAC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out636   --------------------CCTGT--------GGTGA----CTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out637   ---------ATTACGAGGAGCCTGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out638   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out639   ---------TAGGTGACGCGCCTGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out640   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out641   T-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out642   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out643   ---------------------------------GATGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out644   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out645   --------------------CCAGT--------GGTGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out646   C-----------TCTTAAGAACTGCCGG----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out647   ---------CAAGG----TGCTTGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out648   ------------------CACCTGC--------GGTGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out649   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out650   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out651   ----------------------TAC--------AGTGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out652   ----------------------CAACTCAGTCTCTTGT----AGGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out653   ---------GTCGAGACACTG----------------A----GTCC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out654   ----------------------TGT--------GATG-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out655   --------------------TCTGT--------GGAGA----CCTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out656   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out657   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out658   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out659   ----------------------G---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out660   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out661   --------------------C-TGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out662   ----------------------TGG--------TGACT----TCGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out663   ---------CCGCCGGACTAGTCTA--------TCGG-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out664   ---------ACAGCGAGACACATGT--------AGCGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out665   ---------ACTACGAGACGACTGT--------GATGA----CTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out666   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out667   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out668   ----------CTATGATGCATTTGT--------GGTGA----CGG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out669   --------------------C-TGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out670   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out671   C-----------TCTCAAGATCCGCCGA----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out672   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out673   ---------ACTACGAAATGTCTGT--------ATTGA----CTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out674   --------------------CATGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out675   --------------------G-TGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out676   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out677   A-----------GGTGCTCATAGGGATA----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out678   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out679   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out680   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out681   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out682   A-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out683   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out684   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out685   ----------------------G----------TTTTT----TTT-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out686   --------------------TCTGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out687   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out688   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out689   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out690   ---------------------------------GCTGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out691   CTCAAGAGTACCTGTCAACTACGAGCCGCCTGTGGTAA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out692   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out693   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out694   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out695   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out696   ---------ATAGCGAGGCGCCAGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out697   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out698   G-------------------------------------------TG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out699   -------------------------------GTGATGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out700   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out701   ----------------TACAGTGAGGCGCCAGCGGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out702   -------------------GTGTGTGTTTCCATGGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out703   ---------CA---------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out704   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out705   ---------CACAACGGGTGCTTGA--------ATTTT----TTGG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out706   ---------CA-GCCA--------G--------CGGTA----ATTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out707   --------------------CCAGC--------AGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out708   T-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out709   CTCATGATTTG---------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out710   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out711   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out712   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out713   --------------------TCTGT--------GGTAA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out714   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out715   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out716   C-----------TCTCAAGATCTACCGG----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out717   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out718   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out719   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out720   ----------------------TGC--------AGTGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out721   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out722   ---------CAAGT----CCATGTG--------GTA------CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out723   ---------GCAGCGAGCTGTCAGT--------GGTGA----ATTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out724   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out725   -------------------------------GTGGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out726   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out727   ------------------------------TGTGGTAA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out728   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out729   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out730   --------------------TCTGT--------GGTGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out731   --------------------------------------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out732   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out733   ---------------------------------GTAGG----TGAC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out734   -------------------------------GTGGTGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out735   ----------------------TGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out736   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out737   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out738   ----------------------T----------AGTTT----CTCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out739   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out740   ---------ATAGCGAGGCATCAGT--------GGCGA----CTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out741   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out742   ---------------------------------GGTAA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out743   --------------------CCTGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out744   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out745   --------------------CATGT--------GGTAA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out746   ---------CGAGA----CGCATGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out747   ----------------------GTG--------GTA--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out748   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out749   --------------------CCTGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out750   --------------------CTTGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out751   --------------------TCTGC--------GGTGA----CTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out752   ---------------------------------TGATG----ATTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out753   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out754   --------------------A-TGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out755   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out756   --------------------------------------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out757   C-----------TTTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out758   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out759   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out760   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out761   --------------------C-TGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out762   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out763   --------------------A-TGT--------GGTGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out764   T-----------TCAAGATTTGCCGACT----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out765   --------------------CCAGC--------GGTGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out766   T-----------CCGTACCCGTCAACAGTCAGCGGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out767   ---------ACAACAAGTTGTCTGC--------GATGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out768   -------------------------------GCGGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out769   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out770   --------------------------------------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out771   A-----------TCTGCGGCTTAGTCTTTCGAAAGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out772   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out773   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out774   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out775   ----------------------TGT--------GGTGA----CTT-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out776   -------------------------------GTGGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out777   ---------AAAGTGTGGCGCATGC--------GGTGA----CTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out778   --------------------CCTGT--------GGTG-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out779   ---------ACTACGAGACGCCTGT--------GGTGA----CGAT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out780   ---------AGTACGATGCGTCTGT--------GGTGA----CGAT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out781   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out782   ------------------GCCTATG--------GTG------ATTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out783   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out784   C-----------TCTCAAGAT-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out785   --------------------A-TGT--------GATGA----CTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out786   C-----------TCTCAA------GATCAGCCGCCTCA----GTCT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out787   --------------------CCTGC--------GGTGA----TTTCG---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out788   ----------------------TAG--------CA--------AGG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out789   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out790   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out791   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out792   ---------ACAGCGAG----ATGT--------AATGA----TTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out793   -------------------------------ATGGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out794   --------------------CTTGT--------CGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out795   C-----------TCTCAGCATCAGTCTC----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out796   ----------CTCATCAACTGTATG--------AGGGG----TGAT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out797   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out798   -------------------------------GTGATGA----TTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out799   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out800   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out801   ---------ACTACGAGACGCATGT--------GATGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out802   ---------------AGGCGTCTGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out803   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out804   ---------ACTACGAGGCGCCTAT--------TGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out805   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out806   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out807   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out808   C-----------TCTCAA------GATCTGCCGGC---------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out809   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out810   ------------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out811   ---------ACAACGAGACGTTTGC--------GGTGA----CTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out812   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out813   --------------------CCTGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out814   ---------TCAGCGAGGCGCATGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out815   ---------AAAGGC---ATGAGGT--------GATGA----GTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out816   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out817   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out818   ---------TAGAT-AGGCACATGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out819   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out820   ----------------CGAGGTGCA--------TGCAT----ATGG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out821   C-----------TCTCAAGATCTGCTGG----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out822   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out823   ---------------------------------GATGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out824   -------------------------------GTGGTGA----TTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out825   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out826   ---------------------------------GTACA----CGCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out827   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out828   --------------------------------------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out829   ---------GTGTGCACGTTTACAG--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out830   --------------------CATGT--------GGTGA----CTTA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out831   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out832   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out833   ----------------------------------ACGC----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out834   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out835   ---------------------------------------------G----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out836   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out837   --------------------CATAT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out838   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out839   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out840   --------------------CCTGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out841   --------------------TCTGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out842   -------------------------------GTGGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out843   ------------------------C--------AACAG----TGAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out844   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out845   ----------------------TGA--------TGAAT----TCGC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out846   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out847   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out848   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out849   -------------------------------GTGATGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out850   ---------TGAGA----CGTTAGT--------GATAA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out851   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out852   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out853   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out854   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out855   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out856   --------------------TCTGC--------GGTAA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out857   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out858   --------------------------------------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out859   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out860   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out861   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out862   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out863   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out864   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out865   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out866   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out867   ------------------------C--------AACAA----CGAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out868   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out869   ---------ACTACCTGTCAACGGC--------GAGGG------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out870   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out871   -------------------------------GTGGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out872   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out873   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out874   ---------ACAACGAGGCTCCTGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out875   --------------------------------------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out876   -------------------------------GCAGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out877   -------------------------------GTGGTAA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out878   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out879   ---------AGCAAGGCAC----CT-------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out880   ------------------------------------------GCGC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out881   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out882   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out883   ----------ACGG---------------------CAT----GTGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out884   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out885   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out886   ---------CGGTGAGACGACCTCT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out887   ---------------------------------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out888   ----------------------TGC--------GATGA------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out889   ------------------------------TGTGGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out890   ----------------------TAT--------GCTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out891   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out892   ----------------------------------GTCT----CAAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out893   ---------ACAGCGAAGTGTCTGC--------GGTGA----TTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out894   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out895   --------------------C-TGC--------GGTGACTTC--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out896   --------------------G-AGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out897   ----------------GGCATCCGT--------GAAGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out898   C-----------TCTCAAGACCCGCCGA----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out899   ---------------------------------CGGCT----CGGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out900   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out901   --------------------TCCGT--------GATGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out902   ---------------------------------G---A----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out903   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out904   C-----------TCTCAAGATCTACCGA----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out905   --------------------T-AGG--------GTTGA----TTGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out906   --------------------CATGC--------GGTGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out907   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out908   -A-------ACAACAAAACGTATGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out909   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out910   ------------------------G--------ATCCG----C-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out911   ---------ACTACGAGTCACATGT-------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out912   ---------ATAGCGAGGTGCCAGT--------AGCGA----TTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out913   ----------------------T----------GC---------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out914   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out915   --------------------CCTGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out916   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out917   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out918   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out919   ---------GCGA-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out920   --------------------------------------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out921   -A-------CCAGCTAGCCGTCTGT--------GATAA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out922   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out923   ----------------------GGA--------GGTGC----TCAT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out924   ----------------------GGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out925   --------------------CCTGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out926   --------------------G-TGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out927   -------------------------------GTGGTGA----CTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out928   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out929   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out930   -------------------------------GTGGTGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out931   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out932   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out933   -------------------------------GTGGCGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out934   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out935   ------------------------------------------CTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out936   ---------ACTACGAAGCGTCTGT--------AGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out937   ------------------------------------------CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out938   ----------ACGA----GGCATAA--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out939   --------------------CTTGT--------GGTGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out940   --------------------------------------------TT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out941   -------------------GCTTAT--------GGTGA----CTT-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out942   CTCCTGAAAGTGCTCATAGGGATAGGGTGTGCGTGCGT----GTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out943   --------------------AATTG--------GCGCT----ATTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out944   ----------------------------------GTGA----GTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out945   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out946   ----------------------TGC--------GGTGA----GTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out947   ---------C-AGTGAGACGACAGT--------G--------CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out948   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out949   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out950   -----------------------------------TGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out951   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out952   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out953   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out954   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out955   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out956   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out957   ---------TCAGCTACGAGTTGCG--------TATAG----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out958   --------------------A-TGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out959   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out960   --------------------CATGT--------GATGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out961   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out962   ----------TTTTTGTGCACCTGC--------GTTGA----CTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out963   -------------------------------GTGGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out964   --------------------CCTGC--------GATGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out965   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out966   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out967   ----------------------TGC--------AGT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out968   ---------------------------------TGTGC----TGTG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out969   --------------------ACTGA--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out970   ----------------------TGA--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out971   --------------------ATTCCAAAATTTAACCGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out972   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out973   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out974   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out975   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out976   ------------------------C--------GGTGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out977   CG-----------CAT----------------------------C-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out978   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out979   ---------ACAATGAGGCATAATG--------GATGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out980   -------------------------------GTGGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out981   --------------------CCCGC--------GGTGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out982   ---------------------------------GGTAA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out983   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out984   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out985   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out986   -------------------------------GTGGTTA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out987   --------------------CTTGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out988   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out989   --------------------CCTGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out990   --------------------------------------------TT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out991   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out992   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out993   --------------------------------------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out994   -------------------------------GTCGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out995   --------------------CATGT--------GATGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out996   -------------------------------ATGGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out997   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out998   C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out999   --------------------TCTGT--------GGTGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1000  C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1001  ---------ACAGCGAGGCGCCTGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1002  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1003  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1004  ----------------------TGT--------GATGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1005  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1006  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1007  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1008  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1009  ---------ACAACGAGGCGCTTAC--------GGAGT----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1010  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1011  --------------------ACTGC--------CGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1012  A-----------------------A--------TTTCA----AAT-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1013  --------------------CCTGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1014  ---------ACTGCGAGGTGCCTGC--------GGTAA----ATTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1015  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1016  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1017  ----------------------GGG--------TGCAT----TCAT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1018  ---------------------------------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1019  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1020  --------------------CTAGC--------TGTGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1021  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1022  ------------------CGTTTGT--------GGTGA----TT------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1023  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1024  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1025  ---------ACAGTGATATGTCTGA--------TGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1026  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1027  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1028  CT-----------CAAG--ATTTCG--------GCT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1029  ----------------------GTA--------TCTTT----CGGA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1030  --------------------CTAGC--------GGTGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1031  --------------------------------------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1032  -------------------------------GTAGTGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1033  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1034  C-----------TCTT----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1035  C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1036  ---------AAAGGC---ATGAGGT--------GATGA----GTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1037  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1038  --------------------------------------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1039  --------------------C-TGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1040  --------------------TCTGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1041  --------------------T-TGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1042  --------------------CTTCT--------GTTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1043  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1044  C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1045  C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1046  ----------------------AGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1047  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1048  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1049  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1050  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1051  ---------C----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1052  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1053  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1054  ---------------------------------GGCGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1055  -------------------------------------------CGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1056  C-----------TCTCAAGATTTGCCGC----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1057  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1058  --------------------TCTGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1059  ------------ACAAAGTGTATGC--------AGTGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1060  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1061  --------------------TCTGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1062  ---------------------------------TGCGT----GTGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1063  ---------CGCGTCAGCG-------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1064  -------------------------------TGTGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1065  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1066  ---------AGTACGAGACGCCTGT--------AATCA----CTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1067  --------------------C-TGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1068  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1069  C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1070  ---------TCCTACAATG------------------A----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1071  --------------------CCTGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1072  C-----------TCTCAA------GATCTGCCGGC---------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1073  --------------------TCTGT--------GGTGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1074  T-----------T-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1075  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1076  --------------------CATGT--------CGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1077  ---------AAAAG----TATCGGT--------GATGA----CT------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1078  -------------------------------GTGCTGT----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1079  ---------TGAGG----CGTCAGT--------GGCAA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1080  ---------GGAAG----TGCCTAT--------GATAA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1081  ---------GGAAG----TGCCTAT--------GATAA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1082  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1083  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1084  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1085  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1086  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1087  --------------------CTTTT--------TGAAC----CTT-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1088  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1089  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1090  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1091  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1092  --------------------CATGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1093  ---------ATAGTGAGACGTTTAT--------GGTAA----TTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1094  --------------------C-TGC--------GGTGA----CTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1095  --------------------CGACA--------TTGTG----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1096  ---------ACAACGAGACGCCTTC-------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1097  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1098  -------------------------------GTGCTGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1099  --------------------CCTGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1100  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1101  -------------------------------GTGGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1102  --------------------TCTAC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1103  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1104  --------------------C-TGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1105  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1106  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1107  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1108  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1109  A-------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1110  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1111  --------------------------------------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1112  ----------------------TGT--------GGTGT----ACCC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1113  C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1114  C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1115  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1116  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1117  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1118  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1119  C-----------TCTCAAGACCCGCCGA----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1120  --------------------------------------------GC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1121  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1122  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1123  C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1124  -------------------------------GTGGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1125  -------------------------------------T----TGTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1126  CTCAAGATCTTGCCAGCTCAGTCTCGAAGGTGTTCA--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1127  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1128  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1129  --------------------------------------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1130  ------------------------T--------AGCTG----ATAC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1131  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1132  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1133  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1134  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1135  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1136  --------------------CCTGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1137  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1138  -------------------------------GTGGTGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1139  ---------------------------------TCAGT----CTAT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1140  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1141  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1142  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1143  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1144  ---------CAAGA----CACATAT--------GGTGA----CTTA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1145  ----------------------GGT--------GAT-------TTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1146  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1147  C-----------TCTT----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1148  -------------------------------GTGGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1149  C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1150  -------------CGATGAGCCTGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1151  ---------CTAAA----CATTATT--------GATGA----CTCC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1152  --------------------CCTGC--------GGTAA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1153  ----------------------ATG--------TGACT----TCGA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1154  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1155  ------------------------C--------AACA-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1156  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1157  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1158  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1159  --------------------CGCGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1160  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1161  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1162  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1163  ---------ACAGCGAGGCGTCAAT--------GGTGA----CTT-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1164  -------------------------------GTGGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1165  --------------------CATGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1166  -------------------------------GTGGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1167  ------------------------T--------AACAA----TGAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1168  ---------ACAGCGAGGCGTCTGT--------GAGAC----T-TT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1169  ------------------------T--------CACAA----AGTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1170  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1171  ---------------------------------GTGCG----TATG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1172  --------------------TCTGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1173  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1174  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1175  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1176  --------------------CTTGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1177  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1178  C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1179  --------------------C-TGT--------GGTAA----TTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1180  --------------------CCTGT--------GGTGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1181  ------------------------C--------CTCAA----ATAC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1182  C-----------TTTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1183  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1184  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1185  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1186  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1187  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1188  --------------------CATGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1189  ----------------------GTG--------ACTTC----ATCA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1190  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1191  ------------GTGAGCCGCATGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1192  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1193  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1194  T-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1195  --------------------------------------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1196  --------------------TATGT--------GGTGT----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1197  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1198  ----------ACAACGAACGTCATC--------GATGG----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1199  ---------------------------------G----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1200  ---------------------------------G---A----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1201  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1202  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1203  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1204  ---------ACAGCGAGACGTCTGT--------GGTGA----TT------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1205  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1206  ---------------------------------TAAGT----GTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1207  ------------------------------------------TTCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1208  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1209  ------------------------T--------AACTG----TCAC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1210  CTCAAGACCTATCGGTCAGCTCAG--------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1211  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1212  C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1213  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1214  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1215  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1216  --------------------TCTGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1217  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1218  ---------ACGTGG-----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1219  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1220  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1221  C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1222  -------------------------------------G----G-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1223  C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1224  -------------------------------GTGGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1225  ---------AAAGTT---GTG-AGT--------GATGA----GTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1226  -----------------------------------TGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1227  AA-----------GGAGAGGT-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1228  ---------CAA-CGAGGTGTCTG--------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1229  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1230  --------------------------------------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1231  ---------ACAACAAGACGTTTGC---GGTATGGTGA----CTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1232  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1233  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1234  AG--------CGATGCGTCTGTGTT--------TACTA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1235  ---------ACTGCGAGGTGCATGT--------GTTTA----CGTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1236  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1237  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1238  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1239  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1240  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1241  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1242  C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1243  -------------------------------GTGGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1244  C-----------TCTCAAGAACTGCAGG----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1245  --------------------C-TGT--------GGTAA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1246  ---------TGACGT------TTGA--------GG---------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1247  --------------------------------------------TT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1248  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1249  ---------ATGGAGAGGTATCTGT--------GCTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1250  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1251  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1252  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1253  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1254  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1255  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1256  C-----------TCTT----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1257  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1258  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1259  C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1260  --------------------C-TGC--------GGTGA----CATC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1261  C-----------TGTCAAGATATGCTAA----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1262  ---------GGCACCAGTGGTGAGT--------GGTGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1263  --------------------TCTGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1264  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1265  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1266  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1267  ----------------------AAC--------GATGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1268  -------------------------------GCGATGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1269  ---------ACTACGAGGCGCTTAT--------GATGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1270  C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1271  --------------------------------------------TT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1272  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1273  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1274  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1275  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1276  C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1277  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1278  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1279  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1280  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1281  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1282  --------------------TCTGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1283  ---------------------------------GATGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1284  ---------ACAGCGAGGCATCTAT--------CGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1285  -------------------------------GTGGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1286  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1287  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1288  G-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1289  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1290  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1291  ----------------------GCT--------CATAA----GGG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1292  ---------ATAACAAGCTGTCAGT--------GACAA----TTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1293  --------------------GCTGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1294  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1295  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1296  ---------------------------------AG-GT----GCTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1297  C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1298  ---------TCTACGACACGCATGT--------GGTAA----CT------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1299  --------------------TCTGC--------GGTGA----CTTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1300  --------------------TCTGC--------GGTGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1301  ---------ATGGTGAGATGTCTTT--------GATAA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1302  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1303  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1304  --------------------CCTGC--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1305  -----------------------------------TGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1306  ----------------------TGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1307  --------------------TCTGT--------GGTGA----CTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1308  T-----------TCTCAAAATCTACCGG----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1309  ---------ACCAAGACGCACTTGT--------TATGA----CT------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1310  -G-------TCAGCGAGACGGCTGT--------GGTGA----TTAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1311  -------------CTAAACATTTGT--------GATGA----CTTA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1312  C-----------TCTC----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1313  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1314  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1315  ----------------------CCT--------GTGAT----ACTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1316  A-----------TATCAAGATCTGCCGG----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1317  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1318  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1319  --------------------TCTGT--------GGTGA----TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1320  ----------------------TAT--------TTTGG----AGGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1321  --------------------TCTGT--------GGTGA----CTTC----

GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out0     AAGACTCCAACATGATTCGC-------TGGCCTGGTCTCTTGAAAATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1     ATTGATCTC-----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out2     GTCAATCT----CAAGATGATGTGC--CGGACCAGTCTGTCGGAGGTGAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out3     GTCAATCTCAAAATAATCTGTCTGCGGCCC---AGTCTCTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out4     GTCAACCTTAAGAT--CCGT-------CGGATGAGTCTCTCGATGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out5     TTTCAGTCTTTAACCGGCGTT--G---TGCTTTTAGCGAGAGTTCGGCCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out6     GTCAATCT----CAAAATGTTCGGC--CGGTGGCTCAGTTTCTCGGAGGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out7     GTCATTTCTCAAGAACTGC------C---GGCTC----GGT---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out8     TCAA---TCTCAAGATGATGTGCC---GGAACTAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out9     TCAGTCCT------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out10    ---------------ATCTGCCGA---CGACTCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out11    ATCAATCT----CAAGATAATGTGT--CGAACCAGTCTCTCGTAG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out12    GTCAATCTCTCAAGATATGCCG------GTT-CAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out13    -------------------------------TCAGTTTTTT---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out14    ------CTCTCAACATACGT-------TGGTTCAGTCTTTCGGATGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out15    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out16    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out17    --CAATCTCTCAAGATCTGG-------TGGCTCAGTCTTTTAGAGCTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out18    ATCAACCTTAAGATT-TGTTG--------GCACAGTGTCTCAGAGATGCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out19    GTTAATCTCAAGACCTGTC---------GGTTCGAA--CTCTCATA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out20    AT------------GTCGATCGGC---CGGATCAATATTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out21    CGTCAATCTTAAGATCTTGC-------CGGCTCAATCTTCCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out22    ---------------AAGATCAGC---CGGCTCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out23    ---------------------TGG---TAGATCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out24    ---------------AAAATCTGA---CGGCTCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out25    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out26    GTCAATCTCAAGATGATGTGCCGG---AT---CAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out27    -TCAATTTCTCAAGAACTGTCG------GCT-CAGTCTCCC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out28    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out29    GTCAATCTCAAGATGATCGGCCGG---TGGCTCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out30    ---------------------------------------------GTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out31    GTCAATCTCTCGAGATCTGCCG------TCT-CAATCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out32    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out33    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out34    GTCAATCTCTCAAGATCTGC-------CGGCTCCTTTTTTCAAAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out35    GTCAATTT----TAAGATGATGTGC--CGGATCAGTCTCCCGGAG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out36    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out37    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out38    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out39    ATCAATCTCAAGAC-GCTTCG--T---GACTCCGGTCT-TCAGTAGGCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out40    ---------------AAGATCTGT---CGGCTCAATCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out41    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out42    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out43    --------------------------------------GGAGGTCGTC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out44    ---------------TCTGC-------AGGTTCGGTCTTTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out45    ---------------AAGATCTGC---CGACTCAGTCTTCC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out46    ATCAATCT----CAAGATGATCGGC--CGGTGGCTCAGTCTCTGAGAGGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out47    GTCAATCTTTTAAGATCTGC-------CAGCTCAGTTTCTTGAAAGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out48    ------------------------------CTCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out49    GTCAATCCC----TTAAAATCTGT---CGGCTTAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out50    GTCAATCTCTTAAAACCTGCCG------GTT-TAGTGTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out51    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out52    ---------------------------TTCGTCAATCCTTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out53    GTCAATCTTAAGATGATGTGTCGG---AC---CAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out54    GTCAATCTCAAGATGATGTGTCGG---AC---CAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out55    GTCAATCTCAAGATGATCTGCCGG---CGGCCCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out56    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out57    GTCAATTTTTTAAGACCCGCTAAGC--CAACTCAGTCTCTTGAAG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out58    AAAAAAAAAAAAGATCCTGC-------CGGCTCAATCTCACAGAGGTA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out59    GTCAATCTTTCAAGATCTGTCAG-------CCCAGTTTTTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out60    ---------------AAGACCTGT---TGGCCCAGTCTTCC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out61    ATCAATCTCAAGATAATGTGCCGGAC------CAATCTCTCGGAAGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out62    ---------------------------------AGTCTCTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out63    GTCAATCTTAAAATCTGCC----------GGTCAGCCTTTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out64    GTCAATCTCAAGAC-TTCACG--G-----CTCCGGTCT-TTTGTAGGTGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out65    GTCAATTTCTTAAGATCTGCCG------GCT-CAGTTTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out66    GTCA---ATCTCAAGATGATCGGC---CGGCCCATCTTT-C---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out67    GTCAATCT----CAAGATGATCTGC--TAGCTGCTGGCGGCCCAGTCTCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out68    GTCAATCT------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out69    TCGTCAACCCCAAGATCTGT--CGA-----CTTAGTTTATCGAAGATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out70    -----CC----GTTGTCTGT-------CGACTCAGTCTCTTGAAGACG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out71    ATCAACCTCAAAATATGCCGA--C---TC----AGACTCTCGAAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out72    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out73    ATCAATCTCAAGA-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out74    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out75    ---------------AAGAACTGC---CGGCTCAGTCACTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out76    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out77    ----------------------------AGTCTTTGACCTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out78    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out79    -----------------TAT-------CGGTTTAGTCTTTCGGAGGTC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out80    GTCAATCTCAAGATGATGTACCGG---AC---CAGTATCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out81    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out82    TTGAAGGTCTATCGC--CT------C---AGTGTAAGCATG---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out83    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out84    -----------ATGATCGGC-------CAACCCAGTATTTCGGAGGTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out85    GTCAAGTT----CAAGAT--------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out86    GTCAAGTTCAAAATGATCGGCCAGTC------CAGTCTTTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out87    AA------------GATGATCGGC---CGGCCCAGCCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out88    GTTAATCTTAAGATGATCTGTCAG---CGGCCCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out89    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out90    GTCAATTTTTCAAGGTTTGT--CGGC-CGGCTCAGTCTCTCGAAGTTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out91    GTCAATCTCTCAAGATCTGCCG------GCC--AGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out92    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out93    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out94    GTCAATCTC-----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out95    GTCAATCTCAAGATGATGTGCCGG---AT---CAATTTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out96    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out97    ATTGACTTCGTTATC-TACTG--------GCTCAGTCTCTCGAAGGTGTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out98    TTTGAGGTGTTCATAGGGA------T---AGGGT-----GT---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out99    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out100   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out101   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out102   ATCAATCTCAGGATGATCTGCCGG---CGGCCCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out103   ------------------------------------TTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out104   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out105   ---------------AAGATCTGC---CGGCTCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out106   ------------------------------CCCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out107   GTCAATATCAAGATGATCTGCCGG--------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out108   GTCAATCTC----TCAAGAACAGC---CGGCTCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out109   -------------------------------------------AGA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out110   -----------------------------GCTCAGTCTTTCGAAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out111   GTTAATCT----CAAGATGATGTGC--CGGACCAGTCTCTCGGAG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out112   TTCAATCTCAAAATGATCTGCAGG---CGGTCCATTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out113   GTCAATCTTAAAATGATCGGCCGGTAGCTC---AGTCTCTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out114   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out115   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out116   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out117   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out118   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out119   ---------------AAGATTTGC---CGGCTCAGTCTTTT---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out120   GTCAATCTCTCAAGAT-CTGCCGGCTCAAT------CTTTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out121   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out122   GTCAATCTCGAT-TGCTCTGC--------GACTCCAGTCTGCAATA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out123   -------TCTCAAGATCTGC-------TGGCTCGGTCTCTCGAAAGTA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out124   -----------------TGC-------CATCTCAGTCTCTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out125   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out126   ---------------AAGATCTTC---CAGTTCAGTCTTCAA--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out127   GTCTTT----------------------------------T---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out128   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out129   GTCAATCTCAAGATGATATGCCGGCAGTC---TAGTCTCTGAGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out130   TGGAGGTGCTCGTTGGGTA------G---AGTGT----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out131   GTCAATCTC----AAGA--TGTGC---CGACTCAGTCTCCT---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out132   GTCAATCTCAAAATGATCGGCCGG---TGGCTCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out133   GTCAATCTCTCAAGATCTGC-------CGGCTCAATCTTTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out134   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out135   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out136   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out137   CACC---TCAAGATGTTCGGCCAG---TGGACCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out138   ------------------ATCTGC---CGGCTCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out139   -----TCTT--AGATCCTGC-------CGGCTCAGTTTCTCGAGGTAG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out140   GTCAATCT------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out141   GTCAATCTCAAGATCTGCC------A---GGTCAATTTCTCCAAAGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out142   GTCAATCTCAAGATGATCAGCCGG---TGGCTCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out143   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out144   AAATCTCTCTAGATT-TATAG--------ATTCAGTATCTCGGAGATGCC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out145   TCGTCACCTAAAACC-CGCTG--------GTTCAGTCTTTGAAAGATGCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out146   ---------------GC---------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out147   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out148   ---------------AAGAACTGT---CGGCTCGGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out149   GTTAATTTTGAAATC-CAC-G--------ATCTAATCTCCGAGAGATGCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out150   ---------------TTTGC-------CGGTCCAGTTTCTTGAAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out151   ------------------GC-------CGGACCAGTCTCTCAGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out152   AATC---TCAAGATGATCCGTCGG---CGCCC-TGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out153   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out154   GTCAATCTC----TCAAGATCTGC---TGGCTCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out155   GTCAATCTCTCAAAAATTGC--CGG-----CTCAGTCTTTCGAAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out156   -----TCTCGAGATATGTCGG--C---TC----AATCTCTCGAAGATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out157   GTCAATCTCTCGAGATCTGCCC------GCT-CAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out158   AATC---TCAAGATGATCTGCCGA---CGGCCCAATCTGTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out159   GTCA---ATCTTAAGATGATGTGC---TAGACTAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out160   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out161   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out162   GTTAATCTTAATATC-TGGCG--------GCTCAATCTATCGGAGATAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out163   ---------------AAGATCCGC---CGGCCCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out164   ---------------AAGATCTGC---CGGCTCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out165   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out166   ------------------CAATCT---CTCAA-----GAAC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out167   --CAAACTCTCAAGATCCGC-------CGGCCCAGTCTTTCGAAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out168   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out169   GTCAATCTCAAGATGATGTGCCGG---AC---CAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out170   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out171   GTCAATCTCTCAAGATCTGCCG------GCT-TAGTCCTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out172   ------------------------------------CTCTCAGAGATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out173   ----------------------------GGCTCAGTCCTTTTGAAGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out174   GTCAATATC----TTAAGATCTGT---CAGTCAGCCCAGTT---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out175   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out176   -----TATC--AAATCATGT-------CGGCTCAGTCTCGAAGTTGCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out177   GTCGACGTTAAGATC-TGCAG--------ATTCAATCTCTCGAAGGTGCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out178   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out179   TCGTCAGCCTCAAGATTTGC--CGA-----CTTAGTCGCTCAAAGATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out180   TAGGGATAGGATATC---C------G---TATGT-----------GCG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out181   GTAAACTCCAATATCTGCT------A---GCTCAATCCCTTGAAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out182   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out183   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out184   GTCAATCTCAAGATGATGTTC------CAGACCAGTATTTCGAATGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out185   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out186   --ATCACTTGGGATT-TGCCG--------GCGCAATCTTTCAGAGGTGCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out187   GGGCGTGTGCACGTT--AA------T---GTGCTATTATTT---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out188   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out189   ---------------AAGATCTGC---CGGCCCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out190   GTTAATCTCAAGATGATGTGCCGG---AC---CAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out191   ------------------------------GCCCGTCTTTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out192   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out193   GTCAATCT----CAAGTTGATCTGT--CGTGCCCCAGTCTTT--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out194   GTCAATCTCAAGATGATCGGTCGGTGGCT---CAATTTCTCGGAGGTC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out195   GTTAA---------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out196   GTTAATCTCTCAACATCTGCCGG-------TCAGTCT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out197   GTCAATCTCAGGATGATGT---GCCGGA---CCAGTCTCTCGGAGATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out198   ATCAATCTCTCAAGAACTGTCG------GCT-CAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out199   ---------------AAGATCTGC---GGGCTCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out200   GTCAATCT----CAAGATGATGTGC--TGGACCGGCCTCTTGGAGGTACT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out201   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out202   ATCAATCTTAAGGCTCCGCGG--------CT----CCGCTTTTGTAG---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out203   GCCAATTT----CAAGATCTACATG--CCGGCCCAGTTTCTCGGAGGTGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out204   ATCAATCTCTAAAAATCCGT-------CGACTCAATCTCTCGATTATA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out205   GTCAACATCCAGAC-GCTCCC--C---GACTTCGGTCT-TCTATAGGCAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out206   ---------------------------TTTTGGACGTGCTAG-------T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out207   ---------------AAGATCTGC---CGGCCCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out208   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out209   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out210   ---------------AAGATCTGC---CGGCCCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out211   -----CATG--TGGTGACTT-------TGGCTCGGTCTCTCGAAGATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out212   ATCAACCTCAAAATTTATC---------GACTCGGTCTCTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out213   ---------------AAAATCAGC---CGGTCCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out214   GTCAATCTC-----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out215   GTCAATCTCTCAAGATCTGT-------CGGCTCAGTCTCTCGGAGGTA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out216   GTCAATCTC----TCAAGACCTGT---CGGCTCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out217   GTCACTCT----CAAGATGATGTGC--CGGACCAGTCTCTTGGAG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out218   GTCAATCTC-----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out219   -------------TAAGAT---------AGGGTGTG--CCTGCGTGCA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out220   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out221   ---------------AAGATCTGC---CGGCCCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out222   GTCAATCTTCAGATGCTCCGC--------AAGTGCAGTCTTCTGTAG---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out223   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out224   GTCAATCTGTCAAGATCTGCCG------GCT-CAGTCTTCG---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out225   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out226   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out227   GTGCCTCT------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out228   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out229   GTCAATCTCTCAAGATCTGCCG------GGTTCAGTCTTTT---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out230   ---------------AAGATCTGT---CGGCTCGGTCTCAC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out231   -------TTTCAATATCTGC-------CGGCTCAATCTCTCAGAGGTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out232   GTCGATTTCAAAATCTGCCGG--C---TT----AGTCTCTCATAAGCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out233   ATCAACTTGATCATA-TGCCG--------GCTCAGTCTATCGGAAGTTCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out234   ATCAATTC----CAAGATGATCTGC--CGGTGGCCAAGTCTCTCGAAGGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out235   ------------------------------------TTTACGGG---A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out236   GTCAATCTCTCAAGAA-CTGCCGGTTTGAG------CGTTTGCGTTTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out237   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out238   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out239   GTCAATCTTTTAAGATCTGCCG------GCT-TAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out240   --------------------------------------------GGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out241   GTTAATCTCAAGATGATGTGATGGAC------CAGTCTCTCAGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out242   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out243   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out244   ATCAATCTCTTAATAACTGTCG------GCT-CAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out245   GCGTTCATAAAT--------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out246   GAGTGTTCACACGTG---T------T---TGTGA----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out247   GTCAATCT------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out248   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out249   G-------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out250   -----TCAC--AAGATTTGC-------CGGCTCAGTCTCTCCAAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out251   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out252   GTCAATCTCTTAAAATCTGTTG------TCT-CAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out253   GCATCAATTATGAGACGTGC-------CGGACCAGTCTCTCGGAAGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out254   GTCAATCTCAAGATGATCGGCCGG---TGGCTCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out255   GTCAATCTCAAGATGATGTGCCGGACC------AATCTCTTGGATGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out256   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out257   GTCAATCTCTCAAGATCCGT-------GTGTTCAGTCTTTCGAAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out258   ATCAATCT----CAAGATGATCTGC--CGGCGGCCCAATCTATCGGAGGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out259   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out260   CCGACTCAGTCTTTCGGAGGTGC-------TCATATGGGT----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out261   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out262   ----------------CTAC-------CTGCCCAGTATCTCGAAGTTA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out263   ---------------AAGATCTAT---CGGCCAAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out264   GCCAATAT----CAAGATGATGTGT-------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out265   GCACCCGTCAATAGC-----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out266   ATCAATCTCTCAAGTTTTGCCG------GCT-CAATCTTTT---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out267   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out268   GATCT---------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out269   GTCAATCTATTA----AGA---TTTATGGATTTAATCTTTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out270   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out271   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out272   GTCA---ATCTC--------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out273   GGTTTTCT--------------------------------------GA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out274   GTCAATCT----CAAGATGATGTGC--TGGACCAGTCTCTCGGAAGTGCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out275   G-------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out276   GTCAATCTCTCAAGATCTGCCA------GCT-CAGTCCTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out277   GTCAATCTC-----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out278   GTCAATCTATCAAGATCTGCCA------GTT-CAGTTTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out279   TCGTCAATCTCAAGATCTGT-------TGGCTCAGTCTCTTGGATTTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out280   GTCAATCTCTCAAGAT-CTATCGGCGCGGT------CTTCCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out281   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out282   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out283   GTCAATCT----CAAGATGATCGGA--CGGTGGCTTAGT-------CTCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out284   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out285   ATCAATCTCAAGATGATATGCCGG---AT---CAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out286   GTCAATCTCTCAAGATCTGCCG------ACC-CAGTCTTTA---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out287   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out288   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out289   ATCAAATCTCAAG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out290   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out291   ---------------AAGATCTGC---CGGCTCAGTTTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out292   GTGTGTGTGCATGTTTCCT------GCCTGCTCAGTCTCTATGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out293   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out294   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out295   GT------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out296   GTCAATCTC----TCAAGATCTAC---CGGTTCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out297   GTCAATCTCAAAATGATCGGCCGG---TGGCTCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out298   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out299   GTCAATCTTAAAATGATCTGCCGGCGGTT---CAGTCTCTGAGAGGGG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out300   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out301   GTCAATCTCTCAAGATCTGCCG------GCT-CAATCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out302   ---------------AAGATCTGC---CGGTTTGATTTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out303   ----------ACAGC-----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out304   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out305   ATCAAC--CAACATA-TGCCG--------CCTTAGTCGGTTGGAGATGCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out306   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out307   ATCAGTCTCTTAAGATCTGCCA------GCT-CAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out308   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out309   GTCAATCTCTCAAGAACTGCCG------GCT-TAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out310   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out311   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out312   TTTCAGTGGGAGATGATCG---GCCGGTGGCTCAGTTTCTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out313   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out314   -------------------C-------CGGTTCAGTTTTTCAGAAGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out315   GTCAATCTCTCAAGATATGCCG------GCT-CAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out316   ------------------ACCTGC---CGGCTCGGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out317   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out318   GTCAATCTGTCAAGAT-CTGCCGGCTCGGT------CTTTCGGAGGTA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out319   ---------------AAGATCTGC---TGGATCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out320   ATCAATTTC----TATGCGTCCAT---AGAGGTA----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out321   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out322   -----------------------------------TCTCTCGAAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out323   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out324   GCCATCCTCAAGATC--TATCAG---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out325   TTATCCGTCAACAAC-----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out326   GACAATCT----CAAGATGATCTGC--CGGCTCAATCTCTCGGAA-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out327   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out328   ------------------------------CCCGAAGGTGT---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out329   GTCAATCT----CAATATGATGTGC--CGGACCAGTCTCTCGAAG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out330   GTCAACCT----CAG-----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out331   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out332   ATCAATCTCTCAAGATCTGC-------TGGCTCGGTCTCTCAGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out333   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out334   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out335   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out336   GTCAATCTCAAGATGATCGGCCAC---TGGCTCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out337   ----------------TGTC-------AATCTCAAAATCTGACT---A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out338   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out339   GTCAATCTCAAGATGATCGGCCGG---TGGCTCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out340   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out341   TGAGTGTTCACGTTCACGT------G---TGTTTA---------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out342   ------------------GT-------CGGACCAGTCTCTCGGAGATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out343   -------------GATCTGC-------GAACTCAATCTCTCGAATATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out344   -----------------CAGCCAG---TGGCTCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out345   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out346   ATCAATCTC--A----AAA---TCTTCCGACTCAGTATCTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out347   GTCAATCTCAAGAGGATGTGCCGG---AC---CAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out348   GTCAATCTCAAGATGATCGACCGG---TGACTCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out349   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out350   ---------------AAGATTTGC---CGGCTGGCTCAGCC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out351   GTCAATCTCAAGATGATCGGCCGG---TGGCTCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out352   GTCCACCG-------------------------------TCAAA-GC---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out353   GTTAATCTCTCAAATTTTG------CTGGCCTCAGCCTCTCATAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out354   ATCAATCTCAAGATGATCG---GCCGGTGGCTCAGTCTCTCGAAAGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out355   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out356   ATCAACCT----CAAGATTTGTCGT--CTCAATCTCTCAAAAGTGCTCGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out357   TTGTCAATTTCAAGATCTGT--CGGC-CGGCTCATTCTGTCGAAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out358   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out359   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out360   ----------------ATGC-------CGGCTCAGTCTTTCGAAATTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out361   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out362   ---------------------------CGGTTCAATCTCTT---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out363   GTCAATCTAAAAAAT-TATAA--------GCTCAGTCTTTTGGACGTGC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out364   -----------------TGC-------TGGCTCAGTCTCTCCGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out365   CAACTCTCAAGTTGATGTGC-------CGGACCAGTTTTTTGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out366   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out367   --------------------------------------TTCGGAGGTA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out368   GTCAAATTTTTCAA------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out369   GTCAATTTTT----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out370   GTCATGTTTAATACA-TGTCG--------GCTCGGTCTTTCCAGTGTACT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out371   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out372   ---------------------------------------------GTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out373   TTTCAAGATTTAACCGGCGTT--A---TTCTTTCAGTGATATGTGACA-T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out374   ATCAACCCCAAGATCCGTCGGCGC---GGGTAGGATGTCCGTACGCGCGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out375   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out376   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out377   GTCAATCTCAAAATGATCAGCCGG---TGGCTCAGTTTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out378   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out379   ----------------CGGC-------CGGCTCAGTCTTTCAAAGATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out380   GTCAATTTCAAAATTT---GC------TAATTTAGTTTTTGGAAAGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out381   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out382   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out383   ---------------AAGATTTGC---CGGCTCAGTCTTTCG--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out384   GTCAATCTCAAGATGATCT---GTCGACGGCTCGGTCTCTTGAAGGTC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out385   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out386   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out387   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out388   AGTAATCACTCAAGATCAGT-------CGACTCAGTTTCTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out389   --------------------------------CCAG--CGGTAATTTC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out390   ------------------------------CTGAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out391   ---------------AAATCTGCC---GGCCCGA-TCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out392   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out393   ----------------CATC-------AACCTCAAGATTTGCCT---G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out394   ---------------AAGAACTGC---CGGTTCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out395   GTCAATCTCAAGATGATGTGCCGG---AT---CAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out396   GTCAATTTCTAAAGAAATGC-------CGGTTCAGT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out397   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out398   GTCA---ATCTCAAGATAATGTTT---CGGACCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out399   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out400   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out401   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out402   ATCAATCTC----AAGAATTGCGG---GATCAGTCTCTCGG---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out403   GTCAATCTCTCAATATTTGTCA------GAT-CAGTCTTTT---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out404   GTCA---ATCTCAAGATGATGTGC---CGGACTAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out405   T-------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out406   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out407   GTCAATCTCAAGATGATGTGCCGGACGAGGACCAGTCTCCCGAAGATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out408   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out409   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out410   GTCGATATCTCAAGATCGGATG------GCC-TACTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out411   ATCAACCTCAATATCTACTAA--C---TTGGTCTCTC-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out412   GTCAATGTGAAGATGATTT---GTGGACCC---AGTCTCTCAAATGGC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out413   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out414   ------------------ATATGC---CGGCTCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out415   GTCAATGTCAAGATGATGTGT--C---GA-ACCAGTATCTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out416   TCAATCTCAAGATGATGTGT-------CGGTCCAATCTCTCGAAGATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out417   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out418   ---------------AAGATCTGT---CGACCCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out419   TTGTCGACTTAAAAATCTGC--CGG-----TTCTGTCTCTCGAAGGTA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out420   GTCAATCT----CAACATGATCTAC--CGGACCAGTCTCTCGGAGGTGCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out421   ------TCTCAAAGTCAAGC-------CAGCACAGTCTCTTAAAAGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out422   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out423   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out424   GTCA---ACCTTAAGATGATGTGC---CGGACCAGCCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out425   GTCAATCT----CAAG---ATATGC--CGGCTCAGTCTTTTGAAG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out426   ATCAATATACCGACTCAGT---C--------------CCTCAAAGGTA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out427   GTCAGTCTC----TCAAGATCTGC---CGGTTCAGTCTTTT---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out428   ---------------CC-----------GGCTTAGTCTTTT---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out429   GTCAATCTCAAAATGATGT---GCCGGA---CCAGTCTCTTG--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out430   ATCA---ATCTCAAGATGATCGGC---CGGACCTGTCTCCC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out431   GTCA---ATCTCACGATGTTGTGC---CAGACCAGTTTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out432   ----------------CCGA-------CAACACAATCTTTCAAAAGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out433   GTC-AATCTCAAGATCCCGC-------CGGCTCAGTCTCTGGAAAGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out434   GTTAGTCTC--A----AGA---TTTGCTGGTTCAATCATTCAGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out435   GTTAATCTTGAGG---CTACA--C---CAATCTTGACT-TTGTTAGGCGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out436   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out437   GTCAATCTCTCA----ATA---TCTGTCGGCTCAGTCTGTCGAAGATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out438   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out439   GTCAATCTCTCAAAAACTGCCA------GCT-CAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out440   GTCAACCTCAATATG-TGCCG--------GCATAGCCTCTTGAAGATATT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out441   ---------------AAGAACTGC---CGGCTCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out442   TCGTCAATTCTAAGATTTGC-------CGGTTTAGTCTCTCAGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out443   ---------------AAGATCTGT---CGGCCCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out444   GTCA---ATTTCAAGATGATTGCC---GGA-CCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out445   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out446   -------TCAATATGATCGGAGAG---GTGCTC-----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out447   GTCAATCTCTCAAGACCTGCCGG-------CTCAGTCTTTTGG-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out448   TTCAATCT----CAAGATCACGCTG--GGTCAG-----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out449   ------------------------------AGGGTTAGGGT---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out450   GTCAATCTCAAGATGATCCGCCAG---CAGCTCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out451   GTCAATCTCAAGATGATCGGCCGG---TGTCGCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out452   GTCGTCTC---A-------------------GTCAGAAGTCGGAGGTGCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out453   G-------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out454   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out455   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out456   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out457   ---------------------------CGGCTCAGTTTCTTGGAGCTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out458   ---------------AGTCTC------------------TC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out459   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out460   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out461   GTCAATCTCTCAAAATCTGCCG------GCT-CAGTCTT-C---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out462   --------------------------------------------GATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out463   AATC---TTAAGATGATCGGCCGG---TGGCTCAGTCTCTT---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out464   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out465   -------------------------------------------GTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out466   GTCA---ACCTCCAGATTTTCCAG---CGA---AGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out467   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out468   ----------------CTGT-------AGGCTCAGTCTTTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out469   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out470   ATCAATCTCTCAAGATCTTCCG------GCT-CAATCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out471   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out472   -----------------------C---CGGATCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out473   GGGGTAG------------------GGTGTGTGAGCGTCT------GC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out474   TCA-----------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out475   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out476   ATCAATCTCTAA-----GA---TCTGCCGGCTCGATCTTTCGAAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out477   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out478   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out479   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out480   TCGTCAACCCCAAGATTTGC-------CGACTCAGTCTCTCAAAAGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out481   ---------------------------------AGTCTCTCGAAGGTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out482   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out483   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out484   GTCAATCTCAACATCCGCC---G--TCCGGCTTGGTCTCTCAAAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out485   ATCAATCTTAAAATCTGTC------A---ACTCAGTTTTTTGAAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out486   ---------------AAGAACTGC---CGGCTCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out487   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out488   ----------------CTGC-------CGGCTCAGTGTTTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out489   GTCAATCTCAAGATGATGTGT--------GAGTTCAGTCTTATATAG---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out490   ----------------------GG---TGGCCCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out491   ------------------------------GTGCTCATAGA---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out492   GTCAATCT----CAAGTTGATCGGT--CGGTGGCTCAGTCTGTTGGAGGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out493   TAGATATGATGGTACAGTCTTTCA---AATATTGGTGATAAAAGTAA---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out494   GTCAATCTC----TCTAGATCTGT---CGGCTCAGTCTGC----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out495   -------------------------------TCAGTTTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out496   -------TCTCAAGATTTGC-------CGGCTCAATCTCTTGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out497   ---------------AAGAACTGG---CGGCTCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out498   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out499   ---------------AAGATCTGC---CGGCTTAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out500   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out501   GTCAATCTCTCAAGATCTGC--CGG-----CTCAGTCTCTCAGGGATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out502   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out503   GTCAATCT----CAAGATGATGTGC--CGGACCAGTTTCGAGATGCTCAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out504   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out505   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out506   --------------ATTTAC-------CGGTTCAGTCTTTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out507   GTCAATCTC----TCAAGATCTGC---TGGCTCAGT-CTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out508   TT-CTAAGATTAATCGACGCT--A---TTTTTTAACTGGT----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out509   GTCAATCTCATGATTATCGGCCGGTGGCC---CAGTTTTTCGGAGATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out510   GTCAATCTC----TCAAGAACTGC---CGTTTCTCG----G---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out511   GTCAAATTTCAGGAGAATTAT--C---CATTCGATGAT-AGGTGACTTAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out512   GTCAATCTCTCAACAT----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out513   -----------------CGGTCGG---TGGCTCAGTTTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out514   ATCAACATC--A----AGA---TCTGCGTGCTCAATCTCTCAAAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out515   ---------------AAGATCGGC---CGGCTCTATTTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out516   -----CAACTTCAAAATCTG-------TTGGCTCAGTCTTTCGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out517   TTGTCAACCCTAAGATTTGC--CGG-----CTCAGTCTTTAGAAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out518   ATCGATCT----CAAGATGATGTGC--CGGACTAGTCTCTTGGAG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out519   ---------------AGGACCCGC---CGACCCGACTCA----G------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out520   -----CGTCGATATCTTAAGA--T---CTGCCCACTC-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out521   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out522   GTCAATAT----CAAGATGATGTGT--CGGACCAGTCTCTCTGAGGTGAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out523   GTCAATATT----TCAAAATATGT---CGGCTCAGTCGTCA---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out524   GTCAATCTCTCAAGAACTGCCG------GCT-CAGTGTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out525   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out526   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out527   ---------------------------------------------GTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out528   GTCA---ATCTTAAGATGATGTGC---CGAACCAATCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out529   GTAAATCTCTCAAGAACTGC-------CAGCTCGGTCTTTCGGATGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out530   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out531   ATCAATCTCTCAAGATCTGTCG------GCT-CAGTTTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out532   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out533   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out534   ------------------------------AGTGTCTTGGA---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out535   GTCAATCTCTCAAGACCCGCCGACC--CGATTCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out536   G------------------------------------------GGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out537   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out538   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out539   -TCAATCTCTCGAGACCTGC-------CGGTTCAGTCTCTCACATGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out540   GTCAATCACTCAAGAC-CT------GCTGGCTCAGTCTCTCAGCGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out541   GTCAATTTCAAAATA-TACCG--------GC-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out542   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out543   TCAATCATGAGGATTTGTCAGTCC---AGCCT-------TCGAA-GA---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out544   GTCAATCTCAAAATGATCGGCCGG---TGGCTCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out545   GTCAATCTCAGAATGATCT---GCCAGCGGCCCAGTTTCTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out546   ---------------AAAATCTGC---CGGCTCAGTCTTTCG--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out547   CTCAATCTCACAACATCTGT-------CAGCTCACTCTCTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out548   ATCAATCTCAAGATGATGTGCCGGACCAGT------CTCTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out549   GTCAATCTCAAGATGCTCGGCCGG---TGGCTCAGTTTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out550   ATCCATCTTTCAAGATCTGC-------CAGCTCAATCTCTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out551   GCCAATCTTAAGACGTTGTGT--C---GG-ACCAGTCTCTCGAAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out552   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out553   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out554   ATCAATTTCTTAAGATCTGCCG------GTT-TAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out555   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out556   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out557   GTCA---ATCTCAAGATGATGTGC---CGGACAAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out558   GTCAATCT----CAAGATGATCTGC--CGGCGGTTCAGTCTCTCGGTGGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out559   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out560   -----ACCCATGGTG-----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out561   GTCA---ATCTCAAGATGATGTGC---CAGACCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out562   GTCAATCT----CATGATTTGCCGG--CCGGCTGCTCATAGGGGTATGGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out563   GTCGATCTCTCAAGAACTGC-------CGGCTCAATGTCTTGGAGGTA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out564   ATCAATCTCCCAAGATCTGCCGG-------CTCAGTCCTTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out565   GTAAATCTCTCAAGATCTGTCG------GCT-TAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out566   ---------------AAGATCTGC---CGGCTCAGTCTTTGA--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out567   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out568   ----------------------------------------------TG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out569   GTCAATATTAAGATGATCGGCCGG---TGGCTAAATCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out570   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out571   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out572   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out573   GTCAATCT----CAAGATCATCGGC--CAGCCCAGTCTTTCAGAGGTGAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out574   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out575   TTGTCAATCTCAAGATCTGC--CGG-----TTCAGTTTATCAAA------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out576   GTCAATCTCAAGATCTGGT---G------GTTCAGTATCTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out577   GTCAATCT----TAAGATGATGTGT--TAGACCAGTCTCTCGGAGGTGCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out578   GTCAAT--------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out579   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out580   ATCAATCT----CAAGATGATGTAC--CGGACCAGTCTCTTGGAG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out581   GTCAATCTCAAGATGATGT---GCCGGC---CCAGTCTATCGAAGGTA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out582   -----------------------------------------GGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out583   CTCTCAATGCATGCATGTGC-------CGACTCAGTTTTTTAGAAGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out584   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out585   -----------------------------GCTCAGTCTTTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out586   GTCAATCTCTTGATTTGTCGG--C---TC----AGTAGG-------TG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out587   GGCAATCT----CAAGATGATCGGT--CACCGGCTCAGTCTCTCGA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out588   GTCAATTCCTCGAGATCTGTCG------GCT-CTGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out589   GTCAATCCCTCA----AGA---TCTATCGGCTCTGTCTTTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out590   ---------------AAGATCTGC---CGGCTTAGCCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out591   ---------------AGGCTCTAC---CGGCCCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out592   -----------------TGC-------CAGCTCAGTTTTTCGGAGATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out593   TCAGTGGATAGGGTG-TGCCG--------GCTCGATCTCTCAAAGGTGAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out594   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out595   GTCAATCT----CAAGATGATGTGC--CGGACCAGTCTCTCGGAG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out596   GTCAATCTC----TCAAGATCTGC---CGG-TTAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out597   GTCAATCTCAATATGATGTGCCGG---AC---CAGCATCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out598   TTCA---ATCTCAAGATAATGTGC---CGGACCAGTCTCTT---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out599   GTCAATGTC----TCAAGAACGGC---CGGCCCGCG----T---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out600   GTCAACCTCTCAAGATCTGTCA------GAT-CAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out601   ---------------AAGATCTGC---CGGTTCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out602   GTCA---ATCTCAAGATGATGTGC---CGGACCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out603   GTCAATCT----CAAGATGACCAAC--AGGTTCAGT----------CTTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out604   TGCAATCTCAAAATGATCTGCCGACC------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out605   ---------------AAGACTCGC---CGACCCGACTTA----G------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out606   ------------------------------GGGGAGAGTGT---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out607   ---------------AAGATCTGC---AGGCTCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out608   ACCGACCTCAAGATCCGTTGACTC---AGTGACTCAAAGTCAAA-GG---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out609   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out610   GTCAATCT----CAATATGATGTGT--CGGACGATTTCGTCAATCTCAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out611   ---------------AAAAACTGT---CGGCTCAGTCTCTTG--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out612   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out613   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out614   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out615   ---AATCTCTCAAGAACTGC-------CGGCTCAGTATTTCAGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out616   ----------GATCTGCCGG-------CAGACCAGTCTCTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out617   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out618   TTACAGGATTTAACCAGCGGT--A---TTCCTTAAGTGGTAGGTGACG-G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out619   GTCAATCCCGATG---CTCCA--C---GACTTCATCTT-TTGGCACGTGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out620   ---------------AAGATCTGC---CGGCTCAGTCTTTT---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out621   GTTAATCTCTCAAGATCTGCCG------GCC-CAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out622   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out623   ----------------------------------------------TA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out624   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out625   GTCAATCT----CAAGATGATGTGC--CGGACCAGTCTTTCGGAGGTGCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out626   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out627   GTTAACCTTAAAATCTAAC---------GACTCGGTCTTTCAGAGATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out628   -----TCAACACAAGACGTT-------TGTAGTAATATCTCGCAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out629   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out630   GTTAATCTCTCAAGATCTGCCGGCTC--AG------TCTTTCCCCGTA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out631   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out632   GTCAATCT----CAAGATGATCTGC--CGGCGGCCCAGTCTCTCGGAGGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out633   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out634   GTCAATCTC-----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out635   ACCAAACTCTCAAAATCTGT-------CTCATAGGGTTCG----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out636   GTCAATCTTAAGATGATCTGTCAGCC------CAGTCGTTAAGAAGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out637   GTCAATCTTAAGATGATCTGCCGGCA------CAATCTCTCGTAGATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out638   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out639   ATCTATCTCTCAAAAACTGT--CGG-----CTCAGTCTCTCAAAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out640   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out641   ---------------AAAATTTGC---CGGCTCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out642   ---------------AAGATCTGC---CGGCTCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out643   GTCAATTTCTCAAA------------------ACTTAACATTGGGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out644   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out645   GTCAATTT----CAAGATGATCGGC--CGATGGTTCAGT-------CTCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out646   ------------------------------CTCAGTTTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out647   GTCCATCTTCAAGC---TCCG--C---GATTCAGT---------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out648   ATCAATTTTTCAAAATCTGCTGG-------CTCAATTTTTCAGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out649   ----------------------------------------CGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out650   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out651   GTCAATCCCTCAGCGGCGGCCGG---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out652   GTCAATCTC----TCAAGACTGGT---CAACTCAGTCTCTT---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out653   GTCAATCTC-----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out654   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out655   ATCAATTT----CAAGATGATCTGC--CGGCGGCCATTCTCTCAAAGATG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out656   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out657   ----------------------------------AGTCTCTCGGGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out658   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out659   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out660   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out661   ATCAATCTCAAGATGTTGT---GCCTGA---CCAGTCTCTCGAAAATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out662   GAATCTCTCAAGATCTG---------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out663   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out664   ATTAACCTCAAGATCTGTGGGCACAT----------TCCTTAAAAATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out665   GTCAATCTCTGCTGGC------------------------CGAAAGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out666   ------------------CTCTGC---CTTCGCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out667   ----------------------------------------------TG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out668   ------------------------------CTCGATTTGTCAGGA-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out669   GTCAATATCAAGATGATCG---GCCGGTGGCTCAGTCTCTTGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out670   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out671   ------------------------------CCCGACTCAGT---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out672   ---------------------TGC---CGACCCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out673   CGTAATCTCAAAATGATCTGACGGCGGCG---CAGTCTCTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out674   GTCAATTT----CATGATGATCCGC--CGGTGGCTCAGTCTCTCGGAGAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out675   GTCAATCTCAAGATAATCT---GCCGGCGGTCCAATCTCTTGGAGATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out676   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out677   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out678   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out679   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out680   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out681   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out682   ---------------AAAAACTGC---TGGCTCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out683   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out684   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out685   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out686   ATCATTCT----CAAGATGATGTAC--CGGACCTGTCTCTCGGAAGTGCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out687   ---------TTAAGATCTGT--CGGC-CGGCTCAATCTCTCGGAGATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out688   ---------------AAGATCTGC---CGGCCCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out689   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out690   GCCAATCTCGCGTG------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out691   GTCAATCTCAAGATGATCGGCCGG---CGGCTCAGTTTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out692   ---------------------------------------------GTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out693   ----------------------------GGTTCAGTCTCTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out694   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out695   ------------------------------------------TCGGAG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out696   ATAAATCT------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out697   -----------------------------GTTCAGTCTCTTCGAGATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out698   CTCA---TAAGGGTAGGATGTGCG---TGCGTGCGTTTATC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out699   GTCAATTTAAAGATGATCTGTCAG---AC---CAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out700   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out701   GTCAATCTC----TCAAGAACTGC---CGGCTCGGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out702   GTTATTCTCCAAATGATC----------GGACTAGTTTTTT---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out703   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out704   ---------------AAGAACTGC---CGGCTTTGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out705   ATTTATTTCGTGC---TTTAA--C---CAGCGTTATTTTTTCAGCGAGAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out706   GTCAATCTCTTGAAAACCGTC--------GGC------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out707   GTCAATCTCTCAAGATCAGTCG------GCT-CAATCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out708   ---------------AAGAATTGC---CGGCTCGGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out709   -----------------------C---TAGCTCAGTCTCTT---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out710   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out711   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out712   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out713   GTCAATCT----TAAGATGATGTGC--CGGACCAGTCTCTCGGAG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out714   GTTAATCTCTCAAGATCTGT-------CGGCTCAGTCTTTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out715   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out716   ------------------------------CTTAGTTTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out717   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out718   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out719   --------------------------------CAGTTTCTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out720   GTCAATCTCAAGATGATCGGCCGGTGGCTCATCAGTCTCTCGGGGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out721   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out722   GTCAACCTCA--AGACCTG----T---GGGATCAATCTCTCATAGGGGTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out723   GTCAATCT------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out724   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out725   GTCAATCTCAAGATGATGTGTCGG---AC---CAATCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out726   ------------------TTGTGC---TGGACCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out727   GTCAATCTCAAGATGATCTGCCGC---CGACCTAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out728   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out729   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out730   GTCAATCT----CAAAATGATCGAC--CGGTGGCTCGATTTCTCGGAGGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out731   GTCA---ATCTTAAAATGATATGT---CGGCCCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out732   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out733   G-------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out734   GTCAATCTCAAGATGATCGGCCGG---TGGCTCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out735   GTCAATCTCTCA--------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out736   ----------------------------TACCGATAATTTGCCG---G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out737   -----------------------------------------GGTGCGA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out738   GAGGTGCTCATAGGG-----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out739   -------------------------GCCGGCTCAATTTCTCGGAGATA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out740   GTCAATTTC-----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out741   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out742   ATCAATCTCTTAATATCTC-CGTTGGCCGGCTAATTCTATCGAAGATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out743   GTCAATCTCTCAAGATCTGCCG------CCT-CAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out744   ---------------AAGATCTGC---CGGATCAATTTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out745   GTCAATCT----CAAAATGACATGC--CGGACCGGTCTCTCGGAGGTGCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out746   ATTGACCTCAAAG---TTTGC--C---GGCTTGGATAG-AAGTGGGCTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out747   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out748   -------------------G-------CCGACCAGTTCTTCGGATGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out749   GTCAATCT----CAAGATAATCTAC--CGGCGGTCCAATCTCTCAAAGGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out750   GTCAATCT----CAAGATTATGTGT--CAGACCAGTCTCTTGGATGTGCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out751   GTCAATCTCTCAAGATCTGCCG------GCT-CAGTCTTTT---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out752   ATCAATCTCAAGATGATCTGCCGG---CGGCACAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out753   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out754   TCTAGTCTCTCA----ACA---TTTGTTGGCTCAATCTCTCAAAAATA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out755   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out756   GTCA---ATTTCAAGATCCTGCCG---GCTC-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out757   ---------------AAGATCTGC---CGGCTTAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out758   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out759   ---------------AAGATCTGC---CGGCCCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out760   ---------------AAGAACTGC---GGGCTCGGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out761   CTCAATTTCAAGATCTTGT---CGGAGGTGTTGCTCGTAGGGGTGTGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out762   ---------------------------------------------GTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out763   GTCAATCTCAAGATGATGT---GTCGGA---TCAGTCTCTCGGAGATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out764   ------------------------------CGGTCTCCAGT---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out765   GTCAATCTCTCACGATCTGC-------CGGATCAGTCTTTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out766   GTCAATCTC----TCAAGATCTGT---CGGCTCAGTTTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out767   TTCAATCTCCTTAAAACCGTC--------GACTTGTCTCTCGGAAATACT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out768   GTCAATCTCAAGATGATCGGCCGG---TGGCTCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out769   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out770   GTTA---ATCTCAAGATGATGAGC---CGGACCAGTCTCTT---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out771   GTCAATCTC----TCAAGATCTGC---CGGCTCAGTTTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out772   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out773   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out774   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out775   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out776   GTCAATCTCAAGATGATATGCCGG---AC---CAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out777   ATCAATCTCTCAAGATCTACCGG-------TTCAGTCCTTCGGAGCTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out778   -------------ACGATGATGTGC--CGGACCAGTCTCGCGGAG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out779   GATGTGCCGGACGGTCTCTCGG---------------------AGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out780   GATGTGCC-----------------GGAC---CAGTCTCTCAGAGATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out781   -------------------C-------CGACTCAATCTTTCGAAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out782   GTCAATCTCTCAATATTTA----T---CGGCCCAATCTCCCGAAGCCCGA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out783   ------------------------------CCAAATCGTTTGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out784   --------------------CTGC---CGACCCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out785   GTCAATCTCAAGATCCAGC---CGGC-----TCAGTCCCTCAGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out786   TTCATAGGT----GCACATAAA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out787   -T-CAATTTTCAAGATTTGCCA------GCC-CAGTTTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out788   GTAGGTG---------------------------TG--CGCTCGTGCG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out789   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out790   ---------------AAGATCTGC---GAGTTCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out791   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out792   TTCAATCTTTAAAGATTTCCC--------GTCCAGTATCATGGAGGTAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out793   GTCAATCTCAAGATGATGTGCTGG---AA---CAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out794   GTCAATCT----CAAGATGATGTGC--CGGACCAGTCTTTCGGAG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out795   ------------------------------TCTGGAGAGCT---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out796   GTCAACATCAAGTTC-TGCCG--------GTTCAATCTCTCAGATCAGAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out797   --------------------------------CAGTCTCTCAGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out798   GTCAATCTCAAGATGATCGGCCGG---TGGCTCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out799   ----------------------------------------------TG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out800   ---------------AAGATCTGC---CGGCTCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out801   AACAATGTAAAAATGA------------------------TCTGCCAG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out802   GCCAATCTCTCAAGATCTGT-------CGGTTCAGTCTTCCAGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out803   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out804   GTCAACCTCAAGATGATCTGCCGGC-------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out805   GTCAATCTC----TCGAGAACTGC---CGGCTCAGTCTCCC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out806   -------------------------------CCAGTCTTTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out807   ---------------AAGACCTAC---AGGCTTAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out808   -------------------------------TCAATCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out809   ----------CAAGATCTAC-------CAGATCAGTCTCTCGGAGATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out810   ---------------AAGATCTGC---CGGGCCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out811   GTCAATCTCTCAAGATCTGTCGG-------CCCAGTCTTTTGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out812   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out813   ATCAATCT----CAAGATCCCGGCC--GGCTCAATCTCTCGGA-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out814   GTCAACATTAAGACC-CATCG--------ATTCAATCTTTCAGATGTTCC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out815   ATCAATCCTAAGG---CTTCG--C---GACCCTGGTCT-TCTGTAGGCGA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out816   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out817   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out818   ATCAATCT--TAAAATCTGCCTG-------CTCAGTTTCTCGGAGATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out819   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out820   TCAATCTCAAGATGATGTGC-------CGGACCAGTCTCTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out821   ------------------------------CCCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out822   ---------------AGGATCTGC---CGGCTCAGTCTTTT---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out823   GTTAATCTCAAGATGATGTGCCGG---AC---CAGTTTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out824   GTCAATCTCAAGATGATCGGCCGG---TGGCTCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out825   -----------------------------GTCTAGTCTCTCAAAGATACC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out826   TGTTGT---GAGCGT--CT------G---CGTTTGTAC------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out827   -----------------------C---AGGTCCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out828   GTCA---ATCTCGGTCTAGTCTCT----------------C---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out829   GTCAATCTCAAAATGATTTGTCAGTC------TAGTCTTTCGAAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out830   GTCAATCT----CAAGATGATGTGG--CAAACCGGT----------CTCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out831   -------------------------------------TTTCGAAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out832   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out833   GTCCATCT----CAAGATGATGTGC--CTGACCAGTTTCTTTGAT-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out834   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out835   AGGCGTCTGCGGTGATCTGCCG------GAT-CAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out836   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out837   GTCAACCTCTCAAGATCTGCCG------GCT-CGGTCTCTT---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out838   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out839   ---------------AAGAACTGC---CGGCTCAATCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out840   GTCAATCT----TAAGATGATGTGC--CGGACCAGTCTCTCGGAG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out841   ATCAATCTCTCAAAATCTGCCG------GCT-CAGTCTTG----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out842   GTCAATCTCAAGATGATCTGCTGG---TGGCCCAGTGTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out843   G--------------------------------------TGC--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out844   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out845   CA------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out846   ---------------AAGACCCGC---CGACCCGTCTCAGTCAA------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out847   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out848   ---------------AAGATCTGC---CCGTCCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out849   ATCAATCTCAAGATGATGTGCCGG---AC---CAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out850   ATCAATCTCCAGGC-TCTGCG--A-----CTCCGATCT-CCTGTAGGTGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out851   -------------------------------CCAGTCTCTCAAAGGTA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out852   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out853   -----------AAGACCCAT-------TGTTTCAGTCTTTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out854   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out855   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out856   ATCAATCTCTTAAGATCTGCCG------GCT-GAGTTTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out857   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out858   GTCAATCTCTTGAGATCTGC-------CGGCTCAGTTTTTCGAAGGTA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out859   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out860   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out861   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out862   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out863   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out864   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out865   ------------------GAGCGT---CTG--CGTTTGTAC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out866   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out867   G-------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out868   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out869   ----------GTATGC------------------------GGTAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out870   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out871   GTCAATCTCAAGTTGATCTGCCGG---TGGCCCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out872   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out873   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out874   GTCAACCTCTCGAGATCTGC--CAG-----CTCAGTCTCTCAGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out875   AATC---TCAAAATGGTCTGTCGG---CGGCCCGGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out876   GTCAATCTCAAATTGATCGGCCAG---TGGCTCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out877   GTCAATCTCAAGATGATGTGCCAG---AC---CAGTCTGCC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out878   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out879   --CAAC-----------------------CTCAAGATCTGCCAATCCACT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out880   CTCAATCTCAAGATCTACC---------AA--CCCA--CTTGGATGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out881   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out882   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out883   GTCTCATTTCAGGAGAATTTC--T---TTCAGTGGTAT---AGGGCATAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out884   ----------------------------------GTCTCTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out885   --------------------------------------TCCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out886   GTTAGTTTCAAGATC-CACTG--------GTTTATTTTTTCGAAGGTGTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out887   GTCAATCTAAATATGATCT------GCCGGCGG-----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out888   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out889   GTCAATCTCAAGATGATCTGCCGG---CGGCCCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out890   GTCAAT--------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out891   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out892   -----AT------------------GATG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out893   ATCAATCTTTCAAGATCTGTCGG-------CTCAGTCTTTCGAAAGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out894   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out895   ---AATTTCAAA----AGA---TCAGTCGGCTCAGTCTAACAGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out896   GTTCATCTCTTA----AAA---ACTGCCGGTCTTCCGA-----AGATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out897   GTCAATCA----CAAGAGCTGACGG-------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out898   ------------------------------CCCGACTCAGT---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out899   CTCTCTGGATCTGT----C------G---TCTCGGTCTCTCGAAGGTA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out900   ------------------------------CTCGGTTTCTTGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out901   GTCAATTT----CAAGATGATGTGC--CGGAACAGTCTCTCAGAAATGCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out902   GTCAATCTCTC---------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out903   ----------------CTGG-------CCCCGTCCCTGCTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out904   ------------------------------TTCAGTTTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out905   ACGTGCGTATCTGTAAG-T---GTCTGCGTTGCGTTGTACCGTGTTTC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out906   GTCAATCTCTCAAGAACCGCCA------GTT-CAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out907   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out908   GTCAAACTTAAGATGTGTCGG--C---TCAGTCTCTA-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out909   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out910   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out911   --GGTG-----------------------ACTAGCTAGGTAGGCTGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out912   GTCAAATTTA-AGACTCCGCGAC-------TTCAGTCT------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out913   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out914   ---------------AAGATCTGT---CGGCCGGGTCAGTCT--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out915   GTCAATCTCTCAAAAACTGCCA------GCT-CAGTTTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out916   ------------------------------ACCAGTTTCTT---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out917   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out918   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out919   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out920   GTCG---ATCTCAAGATCTATC------AGCTCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out921   GTCAACCTCAAGATGAATCTG--A---CGACCCAGTATCTCGGAGATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out922   --------------------------------CAGTCTTTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out923   AGGAGTAAAGTGTGCGTTCATAGGGGTGAG------TGTATGCGCGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out924   GTCAATCTCAAGATAATGTGCCGGACCAGT------CTCTCAGAGGTA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out925   GTCAATCTCTCAAGATCTGCCG------ATC-TAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out926   GTCAATATCAAGATTTGTC---GAGTCAATCTT------TTGAAAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out927   GTCAATCTCAAAATGATGTGCCGG---AC---CAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out928   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out929   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out930   GTCAATCTCAAGATGATCAGCCAG---TGGATCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out931   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out932   -------------------------------CCAGTCTTTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out933   GTCAATCTCAAGATGATCGACCGG---TGGCTCAGTCTCAT---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out934   ----------------------------TCATCAATCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out935   GTCAATCTCTCAAGATCTGC-------CGTTCCAGTCTTTCGAAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out936   GTCAATCTCAAGATGATCTGTTGGCC------CAGTCTCTCGGAGATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out937   GTTAATCTCTTAAGATCTGC-------CGGCCCAGTTTTTCAGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out938   ATCAATCTAGAGA---CTCCA--C---GATTCTAGTCT-GCAGCAGGCGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out939   GTCAATCTTTCAAGACCCGCTGATC--CGACTCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out940   GTCA---ATCTCAAGATGTTGTGC---CGGAACAGTTTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out941   -------CGATCAAGATCCGCCACCCGC---TCAGTCTCTCGGAGGTC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out942   G-------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out943   GTCAATCTCTCAAAATCTACCG------GTT-CAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out944   GTCATGT------------------GCCGGACCAGTTTTTTGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out945   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out946   GTCAATCTCTCAAGAT-CTGCCGG--------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out947   ATCAATC-------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out948   ------------ATGAT---CCGCCGGCGGACCAGTCTCTCGGAGATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out949   ---------------------------CGGCCCAATCTCTCGGAGATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out950   GTAATTATC----TCAAGATCCGT---CGGACTAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out951   ----CCCTCAAGATCTGTCGG--T---TC----AGTCTCTCGAAAGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out952   ---------------AAAATCTGC---TGGCACGGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out953   ---------------AAAATCAGC---CGGCTCACTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out954   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out955   ------------------------------------------GAGGTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out956   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out957   ATCAATCTCAAGAAC-TGTTG--------ACTCAATCTTCTCGAAAGTGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out958   GTCAATCTCTCA----AGA---TCTACCGGCTCAATCT-TTCTGGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out959   -----------------------------------------------G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out960   GTCGGTCTCTCAAGATCTATCG------GCC-CAGTCTTTT---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out961   -------------------------------------------AGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out962   GTCAACCTCTTAAGAACTGC-------CAGCCCAGTTTTTCGGAGATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out963   GTCAATCTCAAGATGATGTGTCGG---AC---CAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out964   GTCAATCTCTTAAGATCTGCTG------GTT-CAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out965   ----------------------------GGCTCAATCTCTCAGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out966   CCGTCAACTACGAGACGTCT--GTGG-TGGCTCAGTCTCTCGGAGATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out967   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out968   TTCTC----AAAAAA--AA-------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out969   GTCAATCTCTCAAGAGTTGCCG------GCT-CAGTTTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out970   GTCAATCTCTCAAGAT-CTGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out971   GTTAATCTT----TTAAGATCTGC---CGGCTCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out972   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out973   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out974   ---------------AAGATCTGC---CGTCTCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out975   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out976   GTCAATCTCTCAAGATCTACCG------GCT-CATTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out977   ----------------AATT-------ATGAGACGTCTTTGGT----G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out978   ----------GATCGGCCGG-------TGGCTCAGTTTCTCGGAGGTA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out979   GTTGATATCAAGATGTTCCG------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out980   GTCAATCTCAAGATGATCGGCCAG---GGGCTTAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out981   GTCAATCTCTTAAGATCTGCCG------GCT-CAATCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out982   GTCAATCTTCCAAGATCGC------G---TGTTGTGAGGGT---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out983   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out984   -----GATT--AAGATCTGA-------CGGTTCAGTCTCTCGAAGATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out985   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out986   GTCAATCTTAAGATGATGTGCCGG---AC---CAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out987   GCCAATCTCTCAAGATCTGCCA------GCT-CCACCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out988   ---------------AAGATCTGC---CGGCTCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out989   GTCAATTT----CAAGATGATCTGC--CGGACCAGTCTCTCGGAGGGGTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out990   GCCAATCTTTTAAGATCTGT-------CGGTTCATTCTTTCGAAGATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out991   -----AATCTCACGATCTGT-------CGGCTCAGTTTCTCAGATGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out992   ---------------------------------------TCGGAGTTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out993   GTCA---ATCTCAAAATGATGTGC---CAGACCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out994   GTCAATCTCAAGATGATATGCCGG---AC---CAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out995   GTCAATCT----CAAGATGATGTGC--CGGACCAGTCTTTCGAAGATGCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out996   GTCAATCTCAAGATAATGTGTCGG---AC---CAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out997   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out998   ---------------AAGATCTGC---CGGCTTAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out999   GTCAATCT----CAAGATGATGTGC--CGGACCAGTCTCTCGGAG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1000  ---------------AAGATCTGT---CGGTTCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1001  GACAATT-CTCAACATCTGCCGG-------CTCAGTCTTTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1002  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1003  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1004  GTCAACCTCAAGATT-----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1005  --TCTCAAGACCCGCTGGCC-------CGACCCAGTCTCTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1006  TCAATC---TCAAGATATGC-------GGGCTCAGTCTCTCGAAGATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1007  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1008  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1009  CTCAACTTGATCTGC----------------CGGCCCTCTCGAAAATGCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1010  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1011  GTCAATCTCTCAGGATCTGCCG------GCC-CAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1012  ----------------CTGC-------TGACTCAATCTCTCGGAGATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1013  GTTAATCT----CAAGATGATCTGT--CGGCGGCCGGGTTTCTTAGAGAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1014  GTCAATCTCAAGATGATGTGC--T---GCACAGGT---------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1015  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1016  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1017  AAA-----------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1018  ATGAACCCCAAAATTTGCC------G---GCTCAGTCCCTCGGAGCTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1019  -----TCCC----TTAAGAACCGT---CGGCTCAGACTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1020  GTCAAACTCTCAAAAACTGCCG-------ACTCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1021  -----TCTTAAGATC-TGTCG--------G----CCGGCCCAAAGATGCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1022  TCGTCAATCTCAAAATATGT--TGCC-TGGCTCAGTCTCTCAAACGTA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1023  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1024  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1025  ATCGATCTGTCAACGTCTT--------------------TCGAAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1026  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1027  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1028  ---------------------------GACGTTGTTCTCTCGAA------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1029  GGTGCTCA------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1030  GTCAATCTCTCAAGATCTGTCG------ACT-CAGTCTTGC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1031  AA------------GATGATGTGC---CGGGCCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1032  GTCAACCTCAAGATGATGTGCCGA---AC---CAGTCTCTT---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1033  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1034  ---------------AAGAACTGC---CGGCTTAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1035  ---------------AAGATCTGC---CGGCTCAATCT-TC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1036  ATCAATCTTAAGA---CTTCG--C---GACCCCGATCT-TCTATAGGCGA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1037  --------------------------------------------GGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1038  GTCA---ATCTGAAGATGATGTGC---CGGACCAGTTTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1039  GTCAATATCAAGATGATCG---GTCGGTGGTTCAGTCTCTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1040  GTCAAACT----CAAGATGATCGGC--CGGTGGCTCAGTCTCTCGGAG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1041  GTCAATCTCTCA----AGA---TCTGCCAGCTCAGTTT-TTCAGA-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1042  GTCAATCT----CAATATGATCTGC--TGAC-CCGTCTTTCGAAG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1043  --------------ATCTGC-------CGGCTCAATCTCTCCGAGATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1044  ---------------AAGATCTGC---CGGCCAGTCTT-TC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1045  ---------------AAAACCCGC---CGACCCGACTCG----G------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1046  GTCAATCTGTCAAGACTCTGTCG-GCTCAG------TCTT----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1047  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1048  -------TTTCAAGATCTACTGG-------TCCAGTCTTTCGGAAGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1049  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1050  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1051  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1052  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1053  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1054  GTAGGTGTTCATAAAGGAA------G---CGTGTGTACGTT---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1055  CAATATCTCAAAATC-----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1056  ------------------------------TCGGTCTTTCA---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1057  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1058  GTCAACCT----CAAGATCCATTAA--TTGACTCAGTCTCTT--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1059  GTCAATCTCAAAAT--CTTCT--------AACTTATCTTTCGGAGGTGCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1060  -----TCTC--GAGATCTAC-------CGGTTCAATCTCCCTAAGTTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1061  ATCAATTT----CAAGATGATGTGC--CGGACCAGTCTTTCGAAGGTGTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1062  GCGTT------CATAGGGT------G---AGTGTT-----C---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1063  ------------------------------AGGCG---------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1064  GTCAATCTCAAGATGATGTGCCGA---AC---CAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1065  -----------------------------CT-CAGTTTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1066  GTCAATCTCAAAATCTACCGGCTCAG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1067  GTCGCTCTCTCA----AGA---TCTGCC----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1068  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1069  ---------------AAGATCTGC---CGGCTCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1070  ATCG--ATCTCAAAATCTTCCAG-------CTCAACCTTTCGGCGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1071  GTCAATTT----CAAGATGATCTGC--CGGCGGCACAGTCTCTCGGAGAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1072  -------------------------------TCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1073  ATCAATCT----CAAGATGATCGGC--CTGTGGCTCAGTCTCTCGGAGGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1074  --------------TAAGATCTGC---CGGCTCAGTATTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1075  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1076  GTCAATCT----CAAGATGATGTGC--CGGACCAGTCTATCGGAA-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1077  -TCACGATCTCAAA-ACTTCA--C---GATTCCGGTCT-TCTGTAGATGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1078  GTCAATCTCAAGATGATGTGCCAT---AC---CAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1079  GTCATTCTCGTGACGGCTTCA--T---GACTCCGATCT-TCTATATGTGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1080  AAAAATACTCAAGC--GTCCG--C---C----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1081  AAAAATACTCAAGC--GTCCG--C---CAATCTTATTT-ATT--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1082  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1083  -------------------CTTGT---CGGTTCAGTCTCTT---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1084  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1085  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1086  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1087  ----------------TTGC-------CGGCTATGTCTTTCGGAAGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1088  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1089  -----ACCC--ATCATCTGT-------GAGCACAGTTTCTCGAAGATA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1090  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1091  -------------------------------------------AGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1092  GTCAATCTCTCGAGATTGGCCG------GCT-TGGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1093  GCCATTATCTGAATACTTGT-------CGGCTCAGTCTTCGGAGTGCC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1094  GTCAATCTCAAG----ATC---TATCGGCTCAGTCCTT-CGGAGATGC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1095  GTCAATCT----AAAGATGATGTGC--CAAACCAGTCTTTCGAAG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1096  GTCAATCTCTCAAGAACTGCCGG-------CTCAGTCTCTCGAAAGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1097  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1098  GTAAATCTCAAGATGATGTGCCGG---AC---CAATCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1099  GTCAATCTTTCAAGATCTGTCA------GCC-CAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1100  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1101  GTCAGTCTCAAGATGATGTACCGG---AC---CAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1102  GTCAATCTCTCAAGATCTGTCG------GCT-CAGTTTTTA---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1103  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1104  GTCAATCTCTCA----AAA---TCTGCCGGCTCGGTTT-T----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1105  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1106  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1107  ---------------------------------------TCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1108  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1109  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1110  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1111  GTCA---ATCTCAAGATGATATGT---CGGACGAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1112  GTCAA---------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1113  ---------------AAGATCTGC---CGACTCAGTCTTTA---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1114  ---------------AAGATCTGC---CGGCCTAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1115  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1116  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1117  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1118  ---------------------------------------AA---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1119  ------------------------------GT--AGGGTGT---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1120  GTCA---ATCTCAAGATGATGTGT---CGGACCAGTTTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1121  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1122  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1123  ---------------AAGATCTGC---CGGCTCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1124  GTCGATCTCAAGATGATGTGCCGG---AC---CAGTATCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1125  GACCCTTCAAAATGATACGC-------CAGACCAGTCTTTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1126  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1127  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1128  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1129  ATCA---ATTTAAG----ATATGT---CGGTCCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1130  G-------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1131  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1132  ------TCTCAGATTTAACG-------TGGCTCAGTCTTTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1133  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1134  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1135  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1136  GTCAATCT----CAAAATGATGTGC--CAGACCAGTCTCTCAGAG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1137  -----ATTG--AAGATTTGT-------CAGCTCAGTCCTTCAAAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1138  GTCAATTTCAAGATGATGTGCCGG---AC---CAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1139  CAAGACCCGTCGA----CC------C---GGCTT----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1140  -------TCTAAAGAACTGC-------CGGATCAGTCTCTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1141  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1142  ----------------------------GGCTCAGTCTCTCGAAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1143  ---------------------------------------------GCG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1144  CTTTAAAATTTGTAGGCTCGA--------AGGTGCTCATAG---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1145  GTCAA---------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1146  GTCAATCTC----TCAAGAACTAC---CGGCTCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1147  ---------------AAGATGTGC---CGGTTCAGTCTTCGA--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1148  GTCAATCTCAAGTTGATCGGCCGG---TGGCTCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1149  ---------------AAGAACTGC---CGGCTCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1150  GTCAATCTCAGAATAATCTGCCGGCGACT---TGATCTCTCGAAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1151  GTCAATCTCAAGACACTCCGC--------AACTCCAGTCTCTGTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1152  -GTCAGTCTCTCAAATCTGACG------GTT-CAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1153  CAATGTC-------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1154  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1155  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1156  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1157  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1158  --------------------------------------TTTAAAAATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1159  GTCAATCT----CAAGATGATGTGC--CGGACCAGTCTCTCGGAGGTGCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1160  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1161  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1162  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1163  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1164  GTCAATCTCAAGATGATCGGCCGG---TGGCTTAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1165  GTCAATTA----TAAGATCTATCAA--CGACCTAGTCTCTCGAATGTGCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1166  GTCAACCTCAAAATGATGTGCTGG---AC---CAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1167  G--------------------------------------CATCTGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1168  ATCCATCTCACAAAGTC---------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1169  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1170  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1171  TGCGTT--------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1172  GTCAATATGTCAATATCCGCTG------GCT-CAGTATTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1173  -----------------------------------------------G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1174  -----TCTCAAGATGATCTGCCAGCGGC----TAGTCTGTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1175  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1176  GTCATTCTGTCAAGATCAGCCG------GTT-CAGTTTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1177  -----CTTC--AAGATTTGC-------CGGCTTAATCTCGGAG--GTA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1178  ---------------AAGATCTGC---CGGCCCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1179  GTCAATCTCAAGATGATCA---GCTCATGGCTCAGTTTCTCGGAGATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1180  GTGAATCTATCAAGATCTTCCG------ACT-CAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1181  G-------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1182  ---------------AAGTCGGCC---GTCCCAGTTTTTCA---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1183  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1184  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1185  ------------------------------------------GAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1186  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1187  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1188  GCCAATCTCTTAAGATTGGCCG------GTT-CAGTCCTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1189  ATCTCAATCTCAAGATCTGT-------CAGCTCAGTCTTTCGGAATTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1190  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1191  TTCATTCTTTTAAAATCTGT-------TGGCTCAGTTTTTCAGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1192  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1193  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1194  ---------------AAGATCTCC---TCTTTC-----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1195  GTCA---ATCTCAAGATGATGTGC---CGGATCAGTCTCTT---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1196  ATCAATCTCTCAAGATCTGTCG------GAT-CAGTTTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1197  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1198  ATCAACATCAAGATA-TGTCG--------GATCAGTTTCTCGAAGATGCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1199  ----------------CGAGGCAC---CAGCTCAGTTTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1200  GTCAACTTTAAGATTTGCT------G---ACTC-----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1201  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1202  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1203  ---------------------------------------------GTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1204  TCGTCTATATCAAGAGTTGC--CGG-----TTCCGTCTCACAAAGATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1205  -----------------------------------------------G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1206  GCGCAT-------------------GTTTCGTCAATCTCTCAAGACCC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1207  TCAATCT-----------------------CTCAAGACCCGCCGACCC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1208  -----TTCATCAATCTC--------------TCAAGACCCGCCGACCT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1209  C--------------------------------------TAAGAGG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1210  -----------------------------------TCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1211  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1212  ---------------AAGAACTGC---CGGCTCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1213  GTCAATTTC----TCAAGAACTGC---CGGCTCGGTCT------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1214  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1215  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1216  GTCAATCT----CAAGATGATGTGC--CGGACCAGTCTGTCGAAGGCGAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1217  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1218  ---------------------------------------------ATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1219  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1220  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1221  ---------------AAGAACTGC---CGGCTCAGTCCTTT---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1222  ---------------------------CGGTCCAGTCTTTAGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1223  ---------------AAGACCCGC---CGACCCGATTCA----G------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1224  GTCAATCTCAAGATGATGTGCCGG---AC---CAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1225  ATACATCTTAAGG---CTTCG--C---CACTCTAGTCT-TCCGAT-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1226  GTCAATTTCAAGATGATCGGCCGG---TGGCTCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1227  ---------------------------CAGCTTAGTCTCTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1228  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1229  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1230  GATA---ATCTCAAGATGATGTGG---CGGGCCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1231  GACAATTTTTTAAGATCTGCCGG-------CTCACTTTCGCAGAAGTA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1232  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1233  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1234  ATCAATCTCTCAAGACTCGC-------CGATTCAGTTTCTATGAGATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1235  GTAAC-CTCTCAAGA-----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1236  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1237  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1238  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1239  -------------GATGTGC-------CGGACCAGTCTCTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1240  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1241  ---------------------------------------GC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1242  ---------------AGGATCTGC---CGGCCCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1243  GTCAATCTCAAGATGATCTGCCGG---CGGCCCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1244  ------------------------------CTCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1245  ATCAATTTC--A----AGA---TTTGACGGCTCTGTCTCTCCGAATGG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1246  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1247  ATTA---ATCTCAAGATGATGTGC---CGGACCAGTCTCTT---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1248  GTCAATCTC----TCAAGAACTGC---CGGATCAATCGGAG---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1249  GTCAATCTCAATCTCTCAAAATCTGC-TAACTCAGTCTCTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1250  --------------------------------CAATCTCTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1251  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1252  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1253  GTCAATTTC----TCAAAAACTGC---CGGTTCAGTTTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1254  GTCAATTTC----TCAAAAACTGC---CGGTTCAGTTTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1255  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1256  ---------------AATATCTGC---CTGCTCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1257  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1258  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1259  ---------------AATACTCGC---CGA-CCGACTCA----G------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1260  GTCATTCTCAAGATGATTG---GCGGGTGGCTTAATGTGTAGGATGAG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1261  ------------------------------TAGGGGTAGGG---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1262  GTCAACCTCAAGTTG-TTGTG--C---CGGACCAATCT------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1263  GTCAATTT----CAAGATGATCGGC--CGGTAGCTCAGTCTCTCGGAGGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1264  -------------------------------------------AGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1265  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1266  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1267  ATCGATCTCTCAAGAT-CTGTCGGCTCAGT------C-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1268  ATCAATCTCACGATGATCGGCCGG---TGGCTCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1269  GTCAATTTCAAGATGATGTGTCGGAC------CAGTCTCTTGGAGATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1270  ---------------AAGATCTGC---CGGTTTAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1271  GTCA---ATCTCAAGATGATGTGC---CGGACCAATCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1272  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1273  -----CCTC--AAGATCTGT-------CATATCAGTCTCTCGGAGATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1274  GTCAATCTC----TCAAGATCTAT---TGGTTCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1275  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1276  ---------------AAGATCTGC---CGGCCCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1277  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1278  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1279  -------------GATGTGC-------CGGACCAGTCTCTCGGAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1280  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1281  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1282  GTCAATCTCTCAAGATCTGCCG------GCC-CAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1283  GTCAATCTCTCAAT--------------------------CGAAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1284  GTCAATTTTTTAAGATCTGT-------CGGCTTAGTTTTCCGGTTCTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1285  GTCAATCTCAAAATGATGTGCCGG---AC---CAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1286  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1287  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1288  ---------------ACGATCTGT---TGGCTCGGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1289  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1290  ------------------------------C--AGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1291  --TAGGGG---------GTGAGTGTACGC---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1292  GTCAACCTC-----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1293  ATCAATCTCTCAAGATCTGCCG------GCT-CAGTTTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1294  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1295  ------------------------C--CGACTCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1296  ATAGGAGTA----GGGTGTGGGGT---GAGCTCAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1297  ---------------AAAATCTGT---CGACCCAATCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1298  TCGTCAATCTCAAGATCC-----CGC-TGGCTCGGTCTCTCGAAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1299  GTCAATCT----TAAGATGATGTGT--CGGACTAGTCTCTCCGAG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1300  GTCAATCTCTCAAGTTCTGCCG------GCT-CAATCATTT---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1301  GTCAAT--------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1302  ------------AAATCTGT-------CGGTTCAGTCTTCCGTCGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1303  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1304  GTCAATCTCTTAAAAATTGT--CTG-----CTCAGTCTCTCAGAGCTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1305  GTCAATCTCAAGATGATCGGCCGG---TGGCTCAGTCTCTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1306  GTCAATCTCTCATGAT-CTGCCGGCCCAGT------TTTTCGAAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1307  GTCAATCTCTCATGATCTGCCG------GCT-CAGTCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1308  ------------------------------CTCCGTGTCTT---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1309  TCGTCAATTTCAAGACCTGT--CGGC-TAATTCTATTGGA----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1310  GCCAGCCTCGAGATCTGTCGA--C---G----CATTCTCGCGGAGGTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1311  GTCAACCTAAAGATCTGTTGT--G---TCGGT-CTCTCGAAGGTGCTC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1312  ---------------AAGATTTGC---ATGTTCAATCTTTT---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1313  -----------------------------------------------G--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1314  ----------------------------------GGAAG-------TG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1315  GTCAATCTCAAGATCTGTT---------AAAACAAG--CTTTGAGGTA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1316  ------------------------------CTCAATCTTTC---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1317  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1318  --------------------------------------------GGTA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1319  GTCAATCT----CAAGATGATCTGC--CGGCCGTCCAGT-------CTCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1320  GCTCATAAGGGTAAGTTGTGTGTGTGTGAC------TTTATAGGGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1321  GTCAATGT----CAAGATGATGTGT--CGGACAAGTCTCTCGAGG-----

GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out0     -----------------------------------C--TCATAGGGAT-A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1     --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out2     CATAG----------------------G-----GGT--GA----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out3     -----------------------------------C--TCGTAGGGGTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out4     -----------------------------------C--TCATGGAAATA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out5     ----------------------------------GT--GGCTCAATCT-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out6     GCTCATAGG------------------------------------AGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out7     --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out8     -----------------------AGAAA-----TGC--TCATAGGAGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out9     --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out10    -----------------------TGCAT-----GCG--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out11    ---------------------------G-----TGC--TGATAGGATAGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out12    -----------------------GGAAG-----TGG--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out13    -----------------------CGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out14    -----------------------------------C--TCAAAA-GGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out15    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out16    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out17    -----------------------------------C--TCATA-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out18    ---------------------------------------CGTAAGGGTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out19    ---------------------------------------------GGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out20    -----------------------AGAGA-----TGC--TCATGAGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out21    -----------------------------------C--TCATAGGGGT-A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out22    -----------------------GAAGG-----TGC--TCATATGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out23    -----------------------GAAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out24    -----------------------GGAGG-----TGC--TCGTAGGGTAGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out25    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out26    -----------------------GAAGG-----TGC--TCATAGGGTTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out27    -----------------------GAAGA-----TGC--TCGTAGTGGTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out28    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out29    -----------------------GAAAA-----TGC--TCACAGG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out30    -----------------------------------C--TCATAGGGGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out31    -----------------------GAAGG-----TGC--TCATAGGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out32    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out33    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out34    -----------------------------------C--TCATAGGGGT-A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out35    ---------------------------G-----TGC--TCTTAGAGGTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out36    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out37    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out38    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out39    ------------------------------------------TGTGTGAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out40    -----------------------GGAGG-----TGC--TCA---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out41    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out42    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out43    -----------------------------------C--CGACAGGGAC-A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out44    -----------------------------------C--TCATAT-GGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out45    -----------------------GGAGG-----TGC--TCTTAAGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out46    GCTCATAGG------------------------------------GGTAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out47    -----------------------------------C--TCACAGAGAT-A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out48    -----------------------GGAGG-----TGC--TCATAGGGGTGA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out49    -----------------------GAAGG-----TGC--TTATAGGAATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out50    -----------------------AAAGG-----TGC--TCATAACGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out51    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out52    -----------------------------------T--TCACGGTAATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out53    -----------------------GGAGA-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out54    -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out55    -----------------------GAAGC-----TGC--TCATAGG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out56    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out57    ---------------------------A-----TGG--TCATAGGAATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out58    -----------------------------------C--TCATAGGTGTAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out59    -----------------------------------T--CCATAGGGCTGA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out60    -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out61    -----------------------------------C--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out62    -----------------------------------C--TCATAGGGAT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out63    -----------------------------------C--TCATAAGTGC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out64    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out65    -----------------------GGAAT-----TGC--TCATAAAAGTAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out66    -----------------------GGAGG-----TGC--TCACAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out67    CGGAG----------------------G-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out68    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out69    -----------------------------------C--TCA---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out70    -----------------------------------C--TCATAAGACTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out71    -----------------------------------C--TCATAAGAGC-A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out72    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out73    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out74    --------------------------------------TCATAGGGGT-A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out75    -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out76    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out77    -----------------------------------C--TCATAAGAGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out78    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out79    -----------------------------------A--TCATTAGGATA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out80    -----------------------GAAGG-----TGC--TCATAGTGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out81    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out82    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out83    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out84    -----------------------------------G--TGTGT--GTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out85    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out86    -----------------------------------C--TCATGGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out87    -----------------------GTAGG-----TGC--TCATAAGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out88    -----------------------GAAGG-----TGC--TCATAAGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out89    ---------------------------------------CATAGGGGT-A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out90    -----------------------------------C--TCATAAAGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out91    -----------------------GGAGG-----TGC--TCATAGGAGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out92    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out93    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out94    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out95    -----------------------GAAGG-----TGC--TCCTAGGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out96    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out97    ---------------------------------------GCTACTGACTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out98    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out99    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out100   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out101   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out102   -----------------------GAAGG-----TGC--TCATAGGGATGA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out103   -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out104   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out105   -----------------------GGAGG-----TGC--TCATAGAGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out106   -----------------------GAAGG-----TGC--TCATAAGGTAGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out107   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out108   -----------------------GGAGG-----TGC--TCATAGAGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out109   ---------------------------------------------CG---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out110   -----------------------------------C--TCATAAGGGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out111   ---------------------------G-----TGA--TCATAGAGGTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out112   -----------------------GGAGG-----TGC--TAATATG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out113   -----------------------------------C--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out114   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out115   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out116   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out117   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out118   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out119   -----------------------GGAGG-----TGC--TCATAGAGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out120   -----------------------------------C--TCATAGGG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out121   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out122   ----------------------------------------------GCGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out123   -----------------------------------C--ACATAGGAAT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out124   -----------------------------------C--TCATAGGG-GTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out125   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out126   -----------------------ATGTG-----C----TCATAGAGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out127   -----------------------GGAGG-----TGC--TCATAAAGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out128   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out129   -----------------------------------C--TCATAGGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out130   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out131   -----------------------GAAGA-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out132   -----------------------GGAGG-----TGC--TCATAGG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out133   -----------------------------------C--TCATAGGGAT-A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out134   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out135   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out136   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out137   -----------------------GGAGG-----TGC--TCATAGGGGTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out138   -----------------------GGAGT-----TGT--GCGTGTTGTGAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out139   -----------------------------------G--GTGTGCGTGCGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out140   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out141   -----------------------------------C--TTATGAAGATGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out142   -----------------------GGAGG-----TGC--TCATAGG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out143   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out144   ---------------------------------------GACAGAGACAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out145   ---------------------------------------TATAGAGACAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out146   --------------------------------------TCATAGGAATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out147   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out148   -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out149   ---------------------------------------CGCATCAGTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out150   -----------------------------------C--TCATAG-GGG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out151   -----------------------------------C--TCATAAGAAT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out152   -----------------------GGAAG-----TGG--TCATAAGAGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out153   -----------------------------------C--TTATAGGGGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out154   -----------------------GGAGG-----TGC--TCGTAGGAGTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out155   -----------------------------------C--TCATAGGGTAGA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out156   -----------------------------------T--TTATAAGGAT-A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out157   -----------------------GGAGG-----TGT--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out158   -----------------------GAAGA-----TGC--TCATAAGAGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out159   -----------------------GGAGG-----TGA--TCCTATGGATAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out160   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out161   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out162   ---------------------------------------CATAATGGTAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out163   -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out164   -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out165   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out166   -----------------------TGCCA-----GCT--CAATCTTTCGGA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out167   -----------------------------------C--TCATAAGGAT-A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out168   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out169   -----------------------GAAGG-----TGC--TCATAGTGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out170   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out171   -----------------------TGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out172   -----------------------------------C--TCATAGGGGT-A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out173   -----------------------------------C--TCATAT-GAT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out174   -----------------------TCTCG-ATG-GTG--TTCACAGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out175   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out176   -----------------------------------G--ATAGGATAGGG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out177   ---------------------------------------CATATGGGTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out178   --------------------------------------TCATAGGGGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out179   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out180   -----------------------------------T--TTATATGGGTGA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out181   -----------------------------------C--TCATATGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out182   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out183   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out184   -----------------------------------C--TCGTA-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out185   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out186   ---------------------------------------TATAGAGGTGA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out187   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out188   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out189   -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out190   -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out191   -----------------------------------C--TCATA-GGGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out192   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out193   ----------------------CGAAGG-----TGC--TTATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out194   -----------------------------------T--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out195   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out196   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out197   -----------------------------------C--TCAAAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out198   -----------------------GGAGG-----TGT--TCATAAGA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out199   -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out200   CATAGGATAGGATGTG-CGTGCGTTT------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out201   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out202   ----------------------------------------------GCGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out203   T--------------------------------------CGAAGGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out204   -----------------------------------T--GGGTGACGTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out205   ------------------------------------------TGTGTGAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out206   ----------------------------------AG--GAATAAGGTG-T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out207   -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out208   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out209   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out210   -----------------------AAAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out211   -----------------------------------C--TCATAGGGATAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out212   -----------------------------------A--TCATAT---GC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out213   -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out214   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out215   -----------------------------------T--TCATAGGGGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out216   -----------------------AGATG-----TGC--TCATAAGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out217   ---------------------------A-----CAC--TCATAGGGATA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out218   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out219   -----------------------------------T--TCATAAGGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out220   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out221   -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out222   ----------------------------------------------GCGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out223   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out224   -----------------------GAAG------TGC--TCATAG-GGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out225   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out226   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out227   ---------------------------------------------GGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out228   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out229   -----------------------GAAAG-----TGC--TTATAAGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out230   -----------------------GGAGG-----TGC--TCATAAGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out231   -----------------------------------C--TCATAAAAGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out232   -----------------------------------C--TCGTAAAGTT-A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out233   ---------------------------------------CATAGGAGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out234   GCTAATAGGGATT-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out235   -----------------------------------G--AG----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out236   -----------------------------------T--ACTGTGTTTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out237   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out238   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out239   -----------------------GGAAG-----TGC--TCATAGGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out240   -----------------------------------C--TTAGAGGGGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out241   -----------------------------------T--TTATAGGGGTGA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out242   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out243   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out244   -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out245   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out246   --------------------------------------------GC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out247   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out248   ---------------------------------------CATAG-GGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out249   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out250   -----------------------------------A--TCGTTTGTACGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out251   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out252   -----------------------AAAGG-----TGC--TCACATGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out253   -----------------------------------T--TCATAGGTAT-A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out254   -----------------------GGAGG-----TGC--TC----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out255   -----------------------------------C--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out256   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out257   -----------------------------------C--TTATAGAGAT-A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out258   ACTCATATGG------------------------------------GTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out259   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out260   --------------------------------------GAGTGTATGCGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out261   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out262   -----------------------------------G--TCATAGTGGGAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out263   -----------------------GGAGG-----TGT--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out264   ---------------------------------------CATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out265   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out266   -----------------------GGAGG-----TGC--TCATAGAGGAAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out267   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out268   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out269   -----------------------------------C--TCATTGGGGGAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out270   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out271   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out272   -----------------------GGAGA-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out273   -----------------------------------A--TCTTT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out274   CCTAGGGAT---------------------------------------AG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out275   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out276   -----------------------GGAGG-----TGC--TCATAGGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out277   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out278   -----------------------GGAAG-----TGC--TCATAGGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out279   -----------------------------------C--TCATA-AGGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out280   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out281   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out282   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out283   CGGAG----------------------A-----TGC--TCATAGGAGTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out284   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out285   -----------------------AGAGG-----TGC--TCATAAGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out286   -----------------------GGAGG-----TGC--TCATAGGGGCAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out287   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out288   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out289   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out290   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out291   -----------------------AGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out292   -----------------------------------C--TCCTAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out293   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out294   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out295   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out296   -----------------------TTAGA-----TGC--TAATAGGGATAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out297   -----------------------AGAGG-----TGC--TC----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out298   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out299   -----------------------------------T--GAGTGTACGTGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out300   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out301   -----------------------GGAAG-----TGC--TCATAGG-GTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out302   -----------------------GGAAG-----TGT--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out303   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out304   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out305   ---------------------------------------CATAGGG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out306   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out307   -----------------------GAAGG-----TGC--TCATAGAGTTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out308   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out309   ------------------------GGAG-----TGC--TCATAGGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out310   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out311   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out312   -----------------------------------C--TCGTAGGATTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out313   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out314   -----------------------------------C--TCATAGGGAT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out315   -----------------------GGAGG-----TGC--TCATATATAGGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out316   -----------------------GGAGG-----TGC--TCGTGAGCGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out317   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out318   -----------------------------------C--TTATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out319   -----------------------GGATG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out320   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out321   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out322   -----------------------------------C--TCATAGGGGC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out323   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out324   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out325   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out326   ---------------------------G-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out327   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out328   -----------------------GCGTGTGTGCATT--CAT-AGGGG---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out329   ---------------------------G-----TGC--TCATGAGGGTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out330   -----------------TCTTTCGAAGG-----TAC--TCATAGGGATAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out331   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out332   -----------------------------------C--TCACATGAGCAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out333   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out334   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out335   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out336   -----------------------GGAGG-----TGC--TCATAGG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out337   -----------------------------------C--TCAGTCTCTCG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out338   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out339   -----------------------GGAGG-----TGC--TC----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out340   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out341   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out342   -----------------------------------C--TCATAAGGGT-A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out343   -----------------------------------A--TCATATAGAT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out344   -----------------------GGAGC-----TGC--TCATAGGGATAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out345   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out346   -----------------------------------C--TCATAAAGATAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out347   -----------------------GAAGA-----TGC--TCATAGGAGTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out348   -----------------------GGAGG-----TGC--TCATAGGGATGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out349   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out350   -------------------TCTCGTAGG-----TGC--TCATAAGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out351   -----------------------GGAGG-----TGC--TC----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out352   ----------------------------------------------TTCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out353   -----------------------------------C--TTGTAGAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out354   -----------------------------------C--TCATAATCATGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out355   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out356   AGGAG----------------------------------------GTAAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out357   -----------------------------------C--TTGTAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out358   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out359   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out360   -----------------------------------C--TCATATGTGTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out361   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out362   -----------------------GAAGG-----TGC--TCATAAGGATAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out363   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out364   -----------------------------------C--TTATAGAGGT-A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out365   -----------------------------------C--TCATAGCGGT-A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out366   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out367   -----------------------------------C--TCATATGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out368   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out369   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out370   ---------------------------------------CATAGGAGTGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out371   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out372   -----------------------------------C--TCACAAAGGTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out373   ----------------------------------AC--CCGTCAACAG-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out374   ---------------------------------------CGATAAAGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out375   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out376   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out377   -----------------------GGAGA-----TGC--TCATAGA-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out378   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out379   -----------------------------------C--TCTGCTCATAG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out380   -----------------------------------C--TCATATATAG-G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out381   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out382   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out383   -----------------------GAGGT-----GG---TGCTCATAGGAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out384   -----------------------------------C--TCAT--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out385   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out386   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out387   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out388   -----------------------------------C--TTGTAGCCGT-T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out389   -----------------------------------G--TCAA--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out390   -----------------------GAAAG-----TGC--TCGCAAGGGCTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out391   -----------------------GGAGG-----TGT--TCATAGGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out392   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out393   -----------------------------------C--TC----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out394   -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out395   -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out396   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out397   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out398   -----------------------CTAGG-----TGT--GCGTGCGTGTGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out399   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out400   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out401   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out402   -----------------------AGGTG-----CTC--ATACGGGCAG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out403   -----------------------GAAGG-----TTA--TTGTGC------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out404   -----------------------GGATG-----TGC--TCTTAAGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out405   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out406   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out407   -----------------------------------C--TCATAG------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out408   ---------------------------------------CATAGGGGT-A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out409   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out410   -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out411   -------------------------------------------ATACT-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out412   -----------------------------------C--CAACCTATCG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out413   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out414   -----------------------GGAGG-----TTC--TCGTAGGAGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out415   -----------------------------------C--TGAGGTAGGA-T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out416   -----------------------------------C--TTACGGGGGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out417   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out418   -----------------------GGAGG-----TGC--TCATAAGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out419   -----------------------------------C--TCATAGTGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out420   CATAGGAGTATGGTGT----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out421   -----------------------------------T--TCATAGGTAT-A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out422   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out423   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out424   -----------------------GAAGG-----TAC--TCGTAGAGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out425   ---------------------------A-----TGC--TCATAGAGTTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out426   -----------------------------------T--TAATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out427   -----------------------GAAGG-----TGC--TCACAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out428   -----------------------GAAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out429   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out430   -----------------------TCGGA-----GGTGATCACGGGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out431   -----------------------GGAGG-----TCC--TCATAGGTGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out432   -----------------------------------C--TCATAGAGATCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out433   -----------------------------------T--TCATAGGGGT-A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out434   -----------------------------------C--TCATTGAGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out435   ------------------------------------------TGAGTGAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out436   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out437   -----------------------------------C--TCATAAGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out438   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out439   -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out440   ---------------------------------------CATAGAGGTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out441   -----------------------GGAGG-----TGC--TCATAGATAGGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out442   -----------------------------------C--TCATAG------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out443   -----------------------GGAGG-----TGC--TCATAGGAATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out444   -----------------------GGAGG-----TGC--TCATGGGGTAAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out445   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out446   ----------------------------------------ATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out447   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out448   -----------------CCTCTTGGAGG-----TGC--TCATAAAGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out449   -----------------------GCGTGTGTGCGTT--CATAGGGGG---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out450   -----------------------GGAGG-----TGC--TCATAGGGTAGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out451   -----------------------GGAGG-----TGC--TCATAGGGATAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out452   ---------------------------------------CATATGAATAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out453   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out454   ------------------------GAGT-----TGC--TCATA-----GG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out455   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out456   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out457   -----------------------------------C--TCGTATGGGT-A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out458   -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out459   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out460   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out461   -----------------------GGATG-----TGC--TCATAGAGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out462   -----------------------------------C--TCATAAGAAT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out463   -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out464   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out465   ---------------------------------------------TGC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out466   -----------------------GAAGG-----TGC--TCATTAGGGTAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out467   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out468   -----------------------------------C--TCATAGGG-GTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out469   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out470   -----------------------AAAGG-----TGC--ACTTAAGGACAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out471   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out472   -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out473   -----------------------------------G--TCCAGTGGGAGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out474   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out475   -----------------------------------------------GGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out476   -----------------------------------C--TCATAGGGGTGA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out477   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out478   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out479   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out480   -----------------------------------T--TCACAGGAGT-A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out481   -----------------------------------C--TCATA-GGAA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out482   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out483   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out484   -----------------------------------C--TTACAAGAATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out485   -----------------------------------C--TCATGTGAATAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out486   -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out487   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out488   -----------------------------------C--TCATATGG---G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out489   ----------------------------------------------ACAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out490   -----------------------GAAGG-----TGC--TCATAGAGATAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out491   -----------------------GGTGG-----GT---------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out492   GCTCATAGG------------------------------------GGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out493   ----------------------------------------------AGAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out494   ------------------------GGGG-----TGC--TCATAGGTGTAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out495   -----------------------GGAGG-----TGC--TCATAGGGGCAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out496   -----------------------------------G--TCATAGGGGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out497   -----------------------AGAGG-----TGC--TCTTAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out498   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out499   -----------------------GAAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out500   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out501   -----------------------------------C--TCATACGGTTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out502   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out503   AGGGA----------------------T--------------------AG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out504   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out505   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out506   -----------------------------------C--TCATAGGG-GTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out507   -----------------------GAAGA-----TGC--TCATAAGGATAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out508   -------------------------------------------AAGAT-A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out509   -----------------------------------T--TCACAGACGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out510   -----------------------AGGTG-----CTC--ATAGGGG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out511   ---------------------------------------AAATCAACAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out512   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out513   -----------------------GGAGG-----TGC--TCATAGGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out514   -----------------------------------C--TCATAAGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out515   -----------------------AGAGA-----TGC--TCAGAGGGCGGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out516   -----------------------------------C--TCATAGAGATAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out517   -----------------------------------A--TCATAGGGTAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out518   ---------------------------G-----TGC--TCATAAGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out519   -----------------TCTCTCGAAGG-----TGT--TCATAAGGGTAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out520   -------------------------------------------AATGT-G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out521   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out522   CATAGGGGTAGGGTGTGC--------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out523   -----------------------GTCGG-AAG-TGC--TCATAAGGGAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out524   -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out525   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out526   --------------------------------------------GGGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out527   -----------------------------------C--TCATAGGGAT-A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out528   -----------------------GGAGG-----TGA--TCATAAGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out529   -----------------------------------C--TCATAGGG-GTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out530   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out531   -----------------------GGAAG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out532   -----------------------------------G--TGCTGGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out533   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out534   -----------------------GG--------TGC----TCATAAGGGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out535   -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out536   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out537   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out538   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out539   -----------------------------------C--TCGTAGGGAT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out540   -----------------------------------C--TCACAAG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out541   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out542   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out543   ----------------------------------------------TGCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out544   -----------------------GGAGG-----TGC--TCATAGGGGTCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out545   -----------------------------------C--TTATAGGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out546   -----------------------GAGGT-----GCT--CATATGGGGTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out547   -----------------------------------C--TCATAGAGGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out548   -----------------------------------C--TCGT--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out549   -----------------------GGAGG-----TGC--TC----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out550   -----------------------------------T--TCATAAGAGA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out551   -----------------------------------A--TCATATGGAT-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out552   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out553   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out554   -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out555   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out556   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out557   -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out558   GCTCGTAGGATGC-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out559   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out560   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out561   -----------------------GGAGG-----TGC--TCCTAAGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out562   GT------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out563   -----------------------------------C--TCAGGGTTTAGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out564   -----------------------------------C--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out565   -----------------------GGAGG-----TGC--TCATAGGGCTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out566   -----------------------AGATG-----CTC----ATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out567   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out568   -----------------------------------C--TCATAGGGGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out569   -----------------------GGAGA-----TGC--TCATATAGGGGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out570   ----------------------------------------ATAGGGGC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out571   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out572   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out573   GATAGAGGTAGAG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out574   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out575   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out576   -----------------------------------C--TCATAAAAATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out577   AGGGT----------------------A-----TGC--GT----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out578   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out579   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out580   ---------------------------G-----TGC--TCATAGGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out581   -----------------------------------C--TCGTAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out582   -----------------------------------C--TCTTAAGGGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out583   -----------------------------------C--CCATAGAAAT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out584   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out585   -----------------------------------C--TCATAGGGAT-A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out586   -----------------------------------T--TCGCAGGGGC-A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out587   -------------------------AGG-----TGT--TCATAAGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out588   -----------------------GGAGG-----TGC--TCACAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out589   -----------------------------------C--TCACTGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out590   -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out591   -----------------------GGAAA-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out592   -----------------------------------C--TCATACGAGATA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out593   ---------------------------------------TATAAGGATAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out594   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out595   ---------------------------G-----TGC--TCATAGAGATA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out596   -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out597   -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out598   -----------------------GGAGG-----TGG--TTCTAAGGGTGA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out599   -----------------------GTGTG-----AGC--GTCT--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out600   -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out601   -----------------------GGAGG-----TGC--TTATAAGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out602   -----------------------GAAGG-----TGC--TCATAAGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out603   GGGAG----------------------G-----TGT--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out604   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out605   -----------------TCTTTCGAAGA-----TGC--TCATAGGGATAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out606   -----------------------GCGTGTGTGCGTT--CAT-AGGGA---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out607   -----------------------AGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out608   ----------------------------------------------TGTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out609   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out610   ATGATGTGTCGGACCAGTCTTCCAGAGT-----TGT--TCATTGGGGTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out611   -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out612   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out613   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out614   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out615   -----------------------------------C--TCAAAGGAGTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out616   -----------------------------------C--TCATAAAGAT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out617   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out618   ----------------------------------TC--GGCTCGGTCT-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out619   ------------------------------------------AATGAAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out620   -----------------------GAAGG-----TGC--CCATAGGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out621   -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out622   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out623   -----------------------------------C--CCGTTGGGAT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out624   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out625   CCTAGGGGTAGGGTGAATGTGCATGCGT-----ACT--TA----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out626   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out627   -----------------------------------T--TCATAGAGATA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out628   -----------------------------------C--TCATAGAGATAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out629   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out630   -----------------------------------G--GGATAGGTGTGA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out631   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out632   GCTCATATGGGTAG------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out633   -----------------------------------C--TCATAGGGGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out634   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out635   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out636   -----------------------------------T--CTATA-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out637   -----------------------------------C--TCGT--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out638   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out639   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out640   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out641   -----------------------GGAGG-----TGC--TCGTAGGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out642   -----------------------TGAGA-----TGC--TCATAAGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out643   -----------------------------------C--TCATAAGAGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out644   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out645   CAGAG----------------------A-----TGC--TCATAAGAGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out646   -----------------------GAATG-----TGC--TCATAGGGGTGA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out647   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out648   -----------------------------------T--TCATAGG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out649   -----------------------------------T--TTACGG-GGC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out650   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out651   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out652   -----------------------GTAGG-----TGC--TCATAATGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out653   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out654   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out655   CTCATAGAGATAGTGCGT-------GCA-----TGT--TCATT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out656   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out657   -----------------------------------C--TCATAAGAGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out658   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out659   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out660   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out661   -----------------------------------C--TCATAGGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out662   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out663   -------------------------AGG-----TGC--TCACAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out664   -----------------------------------C--TCATAAGGCTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out665   -----------------------------------C--TCAT--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out666   -----------------------GGAGG-----TGC--TCATAAGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out667   -----------------------------------C--TCATAGGAGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out668   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out669   -----------------------------------C--TCAT--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out670   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out671   -----------------------CTCTCGAAGTGCT--CATAAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out672   -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out673   -----------------------------------C--TTATAAGAGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out674   GCTCATAAGGGTAGG-----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out675   -----------------------------------C--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out676   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out677   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out678   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out679   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out680   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out681   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out682   -----------------------GGAGG-----TGC--TCATAGGGGCAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out683   ---------------------------------------------ATT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out684   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out685   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out686   CATAGGGGGAGGGTGTGC--------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out687   -----------------------------------T--TCATAGGGT-AG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out688   -----------------------GGAAG-----TGC--TCATAGGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out689   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out690   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out691   -----------------------AGAGA-----TGC--TCATAGAGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out692   -----------------------------------T--TCATAGGGGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out693   -----------------------------------C--TCATAAGGAT-A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out694   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out695   -----------------------------------G--AGTATAGGGG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out696   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out697   -----------------------------------C--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out698   -----------------------GTAGG-----TGT--TCGTAAGAGTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out699   -----------------------GAAGG-----TGC--TCATACGGTTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out700   ----------------------------------------ACAGGGGT-A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out701   -----------------------GGAGG-----TAC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out702   -----------------------GAAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out703   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out704   -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out705   ------------------------------------------TGATGTAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out706   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out707   -----------------------AGAAG-----TGT--CCATGAGGATAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out708   -----------------------GGAGG-----TGC--TCAT-GGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out709   -----------------------GAAAA-----TAC--TCTTTGGGCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out710   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out711   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out712   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out713   ---------------------------G-----TGC--TCATAGGGAAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out714   -----------------------------------C--TCATAGGGGTGA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out715   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out716   -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out717   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out718   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out719   -----------------------------------C--TCACAGGAGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out720   -----------------------------------C--TCACAGGAGCAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out721   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out722   ---------------------------------------AGATGTGCGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out723   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out724   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out725   -----------------------GGAGG-----TGC--TCATAGGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out726   -----------------------CGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out727   -----------------------GGAGG-----TGC--TCATATGGGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out728   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out729   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out730   GCTCATAAAG------------------------------------ATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out731   -----------------------GGATG-----TGC--TCATATGGGTGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out732   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out733   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out734   -----------------------GAAGG-----TGC--TCATAGG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out735   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out736   -----------------------------------C--TCAGTTGGTAC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out737   ---------------------------------------CATAGGGAT-A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out738   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out739   -----------------------------------C--TCATAGGGGTAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out740   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out741   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out742   -----------------------------------C--TCATATGAGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out743   -----------------------GGCGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out744   -----------------------GGAGG-----TGC--TCATAAGCATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out745   CATAGGGGTGAGT-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out746   ------------------------------------------TCCGTATG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out747   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out748   -----------------------------------C--TTATAGGGAT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out749   GCTCATAGG------------------------------------GATCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out750   CATAAGGGTAGGGTC-----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out751   -----------------------GGAGG-----TGC--TTATAAGACTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out752   -----------------------GGAGG-----TGC--TCATAGGGGTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out753   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out754   -----------------------------------C--TCATAGG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out755   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out756   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out757   -----------------------GGAGG-----TGC--TCGTAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out758   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out759   -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out760   -----------------------GGAGG-----TGC--TCATAGTCTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out761   -----------------------------------G--TTCTTGCGTA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out762   -----------------------------------C--TCAT--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out763   -----------------------------------C--TCATAGAACAGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out764   -----------------------AA-------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out765   -----------------------------------A--TCATAGGGGT-A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out766   -----------------------GGAGG-----TGA--TCATGGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out767   ---------------------------------------TATATAAAGGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out768   -----------------------GGAGC-----TGC--TCATAGG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out769   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out770   -----------------------GGAGA-----TGC--TCATGGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out771   -----------------------GGAAG-----TGC--TCATAGGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out772   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out773   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out774   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out775   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out776   -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out777   -----------------------------------C--TCATAGGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out778   ---------------------------G-----TGC--TCATAGTAGTAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out779   -----------------------------------C--TCGT--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out780   -----------------------------------C--TCGT--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out781   -----------------------------------C--TCGTAAGGGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out782   ---------------------------------------AGTTGCTCATT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out783   -----------------------------------C--TCATAAGGTAGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out784   -----------------------GGAGA-----TGC--TCAT-GGTGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out785   -----------------------------------T--TCATAGGATAGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out786   -------------------------------------------ATGTTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out787   -----------------------AGAAA-----TGC--TCATAGGAGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out788   -----------------------------------T--TCATAGAGAT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out789   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out790   -----------------------GTAGA-----TGT--TCATAGGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out791   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out792   ---------------------------------------CTCTTGAGATT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out793   -----------------------GGAGG-----TGT--TCCTAAGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out794   ---------------------------G-----TGC--TCCTAGGTGTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out795   -----------------------CGTAG-----GGG--TAGAATGCGCG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out796   ----------------------------------GC--TCACAAGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out797   -----------------------------------C--TCACAAGGAT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out798   -----------------------AGAGG-----TGC--TCATAGG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out799   -----------------------------------C--TCATGTGGTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out800   -----------------------GGAGG-----TGC--TCATAAGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out801   -----------------------------------T--CCAGT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out802   -----------------------------------C--GTACG-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out803   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out804   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out805   -----------------------GGAGA-----TGC--TTATAGGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out806   -----------------------------------C--TCATAGGG-GTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out807   -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out808   -----------------------AGGAG-----ATG--TTCATAGGGATA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out809   -----------------------------------C--TCATAAGGAT-A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out810   -----------------------GGATG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out811   -----------------------------------A--TCAAAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out812   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out813   --------------------------GG-----TGC--TCATAGGAATAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out814   ---------------------------------------AACATGAATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out815   ------------------------------------------TAAG-TGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out816   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out817   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out818   -----------------------------------C--TCATAGGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out819   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out820   -----------------------------------C--TCATAGGGGT-A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out821   -----------------------GGAGG-----TGC--TCATATGCGTTC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out822   -----------------------GGAAG-----TGC--TCACAAGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out823   -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out824   -----------------------GAATG-----TGC--TCATAGGGGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out825   ---------------------------------------GATAAGGATGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out826   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out827   -----------------------GGAGG-----TGC--TGATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out828   -----------------------GGAGG-----TGC--TCATCGAAGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out829   -----------------------------------C--TCATGAAATGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out830   CGTAG----------------------G-----TGC--TCATACGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out831   -----------------------------------C--TCATCAGG-GTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out832   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out833   ---------------------------A-----TGC--TCACAGCGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out834   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out835   -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out836   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out837   -----------------------GAAGG-----TAC--TCATATGGGCAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out838   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out839   -----------------------GGAGG-----TGC--TCATAGTGGTAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out840   ---------------------------G-----TGC--TCATAGGGATAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out841   ---------------------------------------------GATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out842   -----------------------GAAGG-----TGC--TTATAGG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out843   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out844   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out845   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out846   -----------------TCTCTCGGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out847   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out848   -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out849   -----------------------ATAGG-----TGC--TCTTAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out850   ------------------------------------------TGTGTGAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out851   -----------------------------------C--TCATAGGAGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out852   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out853   -----------------------------------C--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out854   ----------------------------------------ATAGGTGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out855   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out856   -----------------------GGAGG-----TGC--TCAATGTGAGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out857   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out858   -----------------------------------C--TCAT--AGGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out859   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out860   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out861   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out862   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out863   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out864   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out865   -----------------------TGTGT-----TTC--TCAAAAAAAA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out866   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out867   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out868   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out869   -----------------------------------C--TCAT--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out870   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out871   -----------------------GGAGG-----TGC--TCTTAGCTAGG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out872   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out873   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out874   -----------------------------------C--TCATAGCGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out875   -----------------------GGAGA-----TGC--TCATAGAAGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out876   -----------------------GGAGG-----TGC--TCATAGA-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out877   -----------------------GGAGG-----TGC--TCATAGGAATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out878   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out879   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out880   -----------------------------------C--TCACAGGGCA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out881   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out882   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out883   ---------------------------------------CCCTCGATAGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out884   -----------------------------------C--TCATAGGGAC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out885   -----------------------------------C--TCATAGGGAC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out886   ---------------------------------------CATAAAAATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out887   ---------------------------------------CATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out888   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out889   -----------------------GAAGG-----TAG--TAACGTGTACGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out890   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out891   ----------------------------------------ACAGGAAT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out892   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out893   -----------------------------------T--TCATAGGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out894   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out895   -----------------------------------G--GGTAGGGTGAGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out896   -----------------------------------C--TCATAAGAATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out897   --------TCGGTTCAGTCTCTCAGAGA-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out898   -----------------------CTCTCGGAGGTGC--TCATAGGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out899   -----------------------------------C--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out900   -----------------------------------C--TCACGAGGATAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out901   CATAAGGACAGGGTGTGC--------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out902   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out903   -----------------------------------C--TCATAGGGGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out904   -----------------------GGAGG-----TGT--TCATAGGAGTT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out905   -----------------------------------C--TAAAAAAA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out906   -----------------------GGAGG-----TGC--TCATAGGAGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out907   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out908   -------------------------------------------AAGAT-G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out909   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out910   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out911   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out912   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out913   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out914   --------------------ATCGGAGG-----TTC--TCATAGGGGGTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out915   -----------------------GGAGG-----TGC--TCATAGGGGTAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out916   -----------------------AGATG-----TGC--TCATAAGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out917   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out918   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out919   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out920   -----------------------GGATG-----TGC--TCATAAGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out921   -----------------------------------T--TCATA-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out922   -----------------------------------C--TCATTGCTGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out923   -----------------------------------T--TGTGAGCATCTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out924   -----------------------------------C--TCATAAGAGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out925   -----------------------AGAAG-----TGC--TCACAGGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out926   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out927   -----------------------GAAGG-----TGC--TCATAGGAGATA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out928   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out929   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out930   -----------------------GGAGG-----TGC--TCATTGGAGGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out931   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out932   -----------------------------------T--TCATAGGGGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out933   -----------------------AGGGG-----TAG--GGTGTGCGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out934   -----------------------AAGAT-----CTA--TCGGCGGCTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out935   -----------------------------------C--TCATAGAG--GT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out936   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out937   -----------------------------------C--TCATAGGGGT-A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out938   ------------------------------------------AATATGAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out939   -----------------------GAAGG-----TGC--TCATATGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out940   -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out941   -----------------------------------A--TCATATGGGGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out942   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out943   -----------------------GAAAG-----TGA--TCATATGTGTAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out944   -----------------------------------C--TCATATGGGTGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out945   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out946   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out947   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out948   -----------------------------------C--TCATAGAGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out949   -----------------------------------C--TCATAGGGAT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out950   -----------------------GAAGG-----TGC--TCATATGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out951   -----------------------------------T--TCATATGAGG-A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out952   -----------------------GAGTG-----TGC--TCATAGGGATAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out953   -----------------------GAAGG-----TGC--TCATAGTGGTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out954   ---------------------------------------------GGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out955   -----------------------------------C--TCACAGAGATAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out956   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out957   ---------------------------------------TAGTAGAAGAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out958   -----------------------------------C--TCATAGGTGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out959   -----------------------------------C----CCATGGAT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out960   -----------------------GGAGG-----TGC--TCATAGAAGTAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out961   -----------------------------------C--TCACAAAGGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out962   -----------------------------------C--TCGTAAGGAT-A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out963   -----------------------GAAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out964   -----------------------GGAGG-----TGC--TCATAGAGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out965   -----------------------------------C--TCATAGGGGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out966   -----------------------------------C--TCATAGTGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out967   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out968   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out969   -----------------------GGAGG-----TGC--TCATGGG-GTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out970   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out971   -----------------------GAAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out972   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out973   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out974   -----------------------AGAGA-----TGC--TCTTAAGGTAGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out975   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out976   -----------------------AGCGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out977   -----------------------------------A--TTCGTCAACCT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out978   -----------------------------------C--TCAAAGAGGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out979   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out980   -----------------------GGAGG-----TGC--TCATAGG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out981   -----------------------GGAGG-----TAC--TCACAGTGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out982   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out983   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out984   -----------------------------------T--GCATGCGTGCGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out985   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out986   -----------------------GGAGG-----TGC--TCATAGAAATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out987   -----------------------GAATG-----TGC--TCGTAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out988   -----------------------GGAGG-----TGC--TCATAGGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out989   G-------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out990   -----------------------------------C--TCGTAAGGGA-G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out991   -----------------------------------C--TCATAGAGGTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out992   -----------------------------------C--TCATAGAAAAAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out993   -----------------------GAAGA-----TGC--TCATAGGAGTTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out994   -----------------------GGAGG-----TGC--TCATAAGGTAGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out995   CATAGGGGTAGCGTATCCGTGGTACTTG----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out996   -----------------------GGAGG-----TTC--TCATAGTGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out997   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out998   -----------------------GAATG-----TGA--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out999   ---------------------------G-----TGC--TCCTAGGAGTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1000  -----------------------GGAGG-----TGT--TCATAAGGGTAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1001  -----------------------------------C--TCATAAGAGTGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1002  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1003  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1004  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1005  -----------------------------------C--TCATAGGGGC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1006  -----------------------------------T--CCCTAGGGGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1007  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1008  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1009  ---------------------------------------CATGTCAGCAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1010  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1011  -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1012  -----------------------------------T--TCATAAAAATA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1013  GCTCA------------------------------------TAGAGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1014  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1015  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1016  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1017  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1018  -----------------------------------C--TCATAAGGGTGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1019  -----------------------GGAGG-----TGG--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1020  -----------------------GGAGG-----CGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1021  ---------------------------------------CACAAGGGTAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1022  -----------------------------------C--TCATAGGATAGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1023  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1024  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1025  -----------------------------------C--TCACGAAGA---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1026  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1027  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1028  --------------------------------------AGTGTTCATAG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1029  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1030  -----------------------GGGGT-----TGT--TCGTAGGGTAG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1031  -----------------------GGAGG-----TGT--TCATATGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1032  -----------------------GGAGT-----TGT--TCATATGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1033  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1034  -----------------------GGATG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1035  -----------------------GGAGG-----TGC--TCATCGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1036  ------------------------------------------TAAAGTGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1037  -----------------------------------C--TCATAGGGGC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1038  -----------------------GGAGG-----TGC--TCATAGAGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1039  -----------------------------------C--TCATATGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1040  ---------------------------A-----TGC--TCATAGAGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1041  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1042  ---------------------------A-----TGC--TTATAGGGGTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1043  -----------------------------------C--TCATGTG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1044  -----------------------GGAGG-----TGC--TCATAAGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1045  -----------------TCTCTCGCAGG-----TGC--TCATAGG-GTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1046  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1047  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1048  -----------------------------------C--TCATACGGTAGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1049  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1050  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1051  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1052  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1053  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1054  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1055  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1056  -----------------------TAGGT-----TCT--CATAGGGAT-G-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1057  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1058  -----------------------GGAGG-----TGT--TCATAAGGGTAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1059  ---------------------------------------TAGGTAAAATG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1060  -----------------------------------C--TCATAGAGGTAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1061  CATAACGGTAGGATGTCCGTTCGTATTT-----GTG--AGCGT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1062  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1063  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1064  -----------------------GAAGG-----TGC--TCATAGGGGTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1065  -----------------------GAAGG-----TGC--TCATAGGAATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1066  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1067  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1068  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1069  -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1070  -----------------------------------T--TCACA-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1071  GCTC------------------------------------ATAAGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1072  -----------------------GAAAG-----TGA--TCATGAGAGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1073  GCTCATAAG------------------------------------GGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1074  -----------------------GGAAG-----TGC--TCATAGGGCCAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1075  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1076  ---------------------------G-----TGC--TTATAGAGGTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1077  ------------------------------------------T-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1078  -----------------------GTGGG-----TGC--TCATAGGCGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1079  ------------------------------------------TGTGTGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1080  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1081  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1082  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1083  -----------------------GGAGA-----TGC--TCATAGGAATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1084  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1085  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1086  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1087  -----------------------------------C--TC----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1088  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1089  -----------------------------------C--TCATAAGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1090  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1091  -----------------------------------C--TCACTAAGTTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1092  -----------------------AGAGG-----TGC--CGATAAGGGTAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1093  -----------------------------------C--AT--AACGA---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1094  -----------------------------------T--CA----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1095  ---------------------------G-----TGC--TCATCGGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1096  -----------------------------------C--TCATAGGGTAGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1097  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1098  -----------------------GGAGG-----TGC--TCTTAGGGGTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1099  -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1100  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1101  -----------------------GGAGG-----TGC--TCATAGGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1102  -----------------------GGAGG-----TGC--TCATAGGAGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1103  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1104  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1105  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1106  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1107  -----------------------------------C--TCATAATAAT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1108  -----------------------------------C--TCATAAAGAT-A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1109  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1110  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1111  -----------------------GGAGA-----TGC--TCCTAGGTGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1112  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1113  -----------------------GGAGA-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1114  -----------------------GGAGA-----TGC--TCATAAGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1115  -----------------------------------------------GTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1116  ----------------------------------------------GT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1117  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1118  -----------------------TAACG-----AGG--CGCCTGGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1119  -----------------------GCGTGTGTGCATT--CAT-AGGGG---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1120  -----------------------GAAGA-----TGT--TCATAGACGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1121  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1122  -----------------------------------------TAGGGGT-A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1123  -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1124  -----------------------GGAGG-----TGC--TCTTAGAGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1125  -----------------------------------C--TCATAGGGGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1126  -----------------------------------------TAGGCCTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1127  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1128  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1129  -----------------------GGATG-----TGC--TCATATGGGTGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1130  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1131  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1132  -----------------------------------T--TCATAGGGGCGA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1133  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1134  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1135  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1136  ---------------------------G-----TGC--TCATAGGGGTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1137  -----------------------------------C--TCGTAGAAATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1138  -----------------------GGAGG-----TGC--TCGTAGGAGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1139  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1140  -----------------------------------C--TCATAGGG-ATA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1141  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1142  -----------------------------------C--TCATAGGGAT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1143  -----------------------------------T--TCATATGGATGA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1144  ----------------------------------------------GATT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1145  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1146  -----------------------GGAGA-----TGC--TCATAGGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1147  -----------------------AGGTG-----C----TCATAGGAGTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1148  -----------------------GGAGG-----TGC--TCACAGGGG---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1149  -----------------------AGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1150  -----------------------------------T--TCATAAAAGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1151  ----------------------------------------------ATGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1152  -----------------------GGAGG-----TGC--TCATAGAGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1153  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1154  --------------------------GA-----TGC--TCACAGAGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1155  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1156  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1157  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1158  -----------------------------------C--TCATAGGGATAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1159  CATAGGG---------------------------------------GTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1160  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1161  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1162  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1163  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1164  -----------------------GGAGA-----TGA--TCATAGA-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1165  CATAGTGGT---------------------------------------AT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1166  -----------------------GGAGA-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1167  ---------------------------------------------GGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1168  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1169  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1170  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1171  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1172  -----------------------GGATG-----TGC--TCATAAGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1173  -----------------------------------C--GTACAGGGGT-A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1174  -----------------------------------T--TCATATGTGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1175  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1176  -----------------------ACAGG-----TGT--TCATATGGGTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1177  -----------------------------------C--TCATAGGTGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1178  -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1179  -----------------------------------C--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1180  -----------------------GGAAG-----TGC--TCATATGTATAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1181  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1182  ------------------------GAAG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1183  -----------------------------------------------T--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1184  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1185  -----------------------------------C--TCGTAGGGGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1186  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1187  ---------------------------------TGC--TCATAGGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1188  -----------------------GGAGG-----TGT--TCATAAGAGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1189  -----------------------------------C--TCAT--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1190  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1191  -----------------------------------T--TCAGAA------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1192  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1193  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1194  -----------------------AGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1195  -----------------------GGAGA-----TGC--TCTTAGGGGTGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1196  -----------------------GAATG-----TA---------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1197  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1198  ---------------------------------------CATACGGAGTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1199  -----------------------GGAGG-----TGT--TCATATGGACAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1200  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1201  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1202  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1203  -----------------------------------A--TCATAGGGTAGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1204  -----------------------------------C--TCATTGGGTAGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1205  -----------------------------------T--TCCTAGGGGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1206  -----------------------------------G--TCTCAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1207  -----------------------------------G--GCTCAGGGG---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1208  -----------------------------------G--GCTCAGGAGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1209  ---------------------------------------------CG---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1210  -----------------------GAAGG-----TGC--TCATAACAGTAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1211  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1212  -----------------------GAAGG-----TAC--TCATAGGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1213  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1214  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1215  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1216  CATAG----------------------G-----GGT--GA----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1217  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1218  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1219  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1220  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1221  -----------------------GAAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1222  -----------------------------------C--TCATAAAGACAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1223  -----------------TCTCTCGGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1224  -----------------------GAAGG-----TGC--TCATAAGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1225  --------------------------------------------ATGTGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1226  -----------------------AGAGA-----TGC--TCGTAAGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1227  -----------------------------------C--TAATATGAGTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1228  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1229  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1230  -----------------------AGACG-----TGT--GCATGCTGCACT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1231  -----------------------------------C--TCGTAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1232  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1233  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1234  -----------------------------------T--TCGTAGGAGT-A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1235  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1236  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1237  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1238  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1239  -----------------------------------C--TCATAGGGAT-A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1240  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1241  -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1242  -----------------------GGAGA-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1243  -----------------------GAAGG-----TGC--TC----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1244  -----------------------GGACA-----TGC--TCATGGGGTGGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1245  -----------------------------------C--TCATAGGAGAAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1246  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1247  -----------------------AGAGG-----TGC--TCGTAGTGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1248  -----------------------G---------TTC--TCATAGGGATAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1249  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1250  -----------------------------------C--TCCTA-GGGG-T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1251  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1252  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1253  -----------------------AAAGG-----TGC--TAATAAGGACAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1254  -----------------------AAAGG-----TGC--TAATAAGGACAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1255  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1256  -----------------------GGAGG-----TGC--TCATATGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1257  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1258  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1259  -----------------TCTCTCGGAGG-----TGC--TCGTAGAGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1260  -----------------------------------T--GTGTGTGCGTGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1261  -----------------------GGTGT-----GCG--TG----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1262  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1263  GCTCATAAGA------------------------------------GTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1264  -----------------------------------C--TCGCAAAGGT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1265  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1266  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1267  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1268  -----------------------GGAGG-----TGT--TC----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1269  -----------------------------------C--TCCTAGAAATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1270  -----------------------GGAAG-----TGC--TCATAGGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1271  -----------------------GGAGG-----TGC--CTATAGGAGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1272  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1273  -----------------------------------C--TCGTAGAGGTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1274  -----------------------TTAGA-----TGC--TAATAGGGATAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1275  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1276  -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1277  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1278  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1279  -----------------------------------C--TCATAAGGGT-A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1280  -------------------------------------------TCATA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1281  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1282  -----------------------GGAGG-----TGC--TCATAGTGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1283  -----------------------------------C--TCATAGGGGTGA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1284  -----------------------------------A--TAGGAATAGAGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1285  -----------------------AGAGG-----TGC--TCATAGAGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1286  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1287  -------------------------------------------------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1288  -----------------------GGAAA-----TAC--TGATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1289  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1290  -----------------------GGAAG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1291  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1292  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1293  -----------------------GGAGG-----TGC--TCATAGGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1294  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1295  -----------------------GGAGG-----TGC--TCATAGGCGTGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1296  -----------------------GAAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1297  -----------------------GGAGG-----TGG--TCATAGGGATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1298  -----------------------------------C--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1299  ---------------------------G-----TGC--TCATAGGGATAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1300  -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1301  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1302  -----------------------------------C--TCATACGGAT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1303  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1304  -----------------------------------T--TTATAGGGTAGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1305  -----------------------GGAGA-----TGC--TCATAAGTGTAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1306  -----------------------------------C--TCATAGTGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1307  -----------------------GGAGG-----TGC--TCATAGGGGTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1308  -----------------------TCGGA-----GGT--GCTCATAGGATA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1309  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1310  -----------------------------------G--CGGTA--GGA-G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1311  -----------------------------------------GTAGGGT-A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1312  -----------------------GAAGA-----TGC--TCATAGGAATAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1313  -----------------------------------C--TCATAGGGGC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1314  -----------------------------------C--TCGTGGTGGT-A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1315  -----------------------------------C--T-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1316  -----------------------GGAGG-----TGT--TCATAAGAGTGA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1317  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1318  -----------------------------------C--ACTTAAGTGG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1319  CGAAG----------------------A-----TGC--TCATAGGGATAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1320  -----------------------------------A--GTGTACACGCGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1321  ---------------------------G-----TGC--TCATAGAAGTAG

GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out0     ATA----TGTGCGT-----GCCT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1     --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out2     --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out3     -GA----TGAGTGTG-CGTGT-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out4     TTT-GGCCATAAGT-----GCGT-----TCAT------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out5     TTG----AAGGTGT-----TCAT-----AAGG------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out6     -GG----TGTGCGTG-CGTGCGT-----TCAT------------AG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out7     ----------CTCTC-GAGGTGTTCA------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out8     -GG----TGT--------------------------GTGTGCGTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out9     --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out10    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out11    -G---------TGTG-CATGCAT-----GTAT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out12    -GG----TGTCC-----GTGTGT-----GCGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out13    -CG----TGT--------------------------TCGTGTGTGC-GTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out14    -AGGG--TGTGCGT-----T------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out15    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out16    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out17    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out18    -GA----TATGCATG-CATGCAT-----TCAA------------AAGAG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out19    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out20    -GG----TGT--------------------------GCATGCGTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out21    GGATG--T--ACGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out22    -GG----TGTGCGTG-CGTTC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out23    -GG----TGT--------------------------GCGTGTGTGC-GTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out24    GTG----TGTGTATG-CGTTCATAG-------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out25    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out26    -CG----TGT--------------------------GCGTGCGTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out27    -GG----TGTTCGTG-GGTGCGA-----TCAT------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out28    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out29    -------------GG-TAGCGTG------------TGCGTGCGTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out30    -AGG----------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out31    -AG----TGTGC-----GTATAT-----GCGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out32    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out33    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out34    GGGTG--CGCGTGT------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out35    -G-------GATGTG-CGTGCTT-----GTGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out36    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out37    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out38    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out39    -TG----TGTGAG---TCCAGT-------------------------GG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out40    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out41    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out42    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out43    GGG----TGTGCG---------T---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out44    -AGTG--TGTGCGT-----T------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out45    -AG----TGTGCGTG-TGTGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out46    -GA----TGTGCGTG-CGTGCAT-----TCAT------------AG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out47    AGG----TATGCGT-----GTGT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out48    -GC----GTA--------------------------CGCG---CGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out49    -GG----TGT--------------------------GCCTTTGTGC-GTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out50    -GG----TGTGT---------GC-----ACGT------------GC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out51    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out52    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out53    -AG----TGT--------------------------GCGTGCATA----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out54    -GG----TGT--------------------------GCGTGCGTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out55    -------------GG-TAGGATG------------TGCGTGCATG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out56    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out57    -TA----TGTACGTG-----TGT-----GCAT------------TT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out58    GAT-TTGCGTGCGT--------------TCAT------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out59    ---------GTATT-----GTCA-----GCG-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out60    -GG----TGTGCGTG-TGTGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out61    ---------GGTGT-----GCGT-----GCG-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out62    -AGCG--TGTGCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out63    --------------------------------------------TCATAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out64    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out65    -GG----TGTGCGCA-CGTGTCT-----TCAT------------AA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out66    -GG----TGA--------------------------GTGTGCGTG----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out67    -GG----TGAGCGTG-CGTGCGC-----GTGT------------GT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out68    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out69    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out70    ACT-A--TGTGTGTG-TGTGCGT-----TCATAGAAGTGAGTGTACTTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out71    GGG----TATGCGT------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out72    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out73    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out74    GAGTG--T--GCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out75    -GG----TGTGCGTG-TGT-------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out76    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out77    -AAAG--TGTGCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out78    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out79    GGA-TGT-GCATGT-----GTGT-----TTTC------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out80    -GG----TGT--------------------------GCGTGCGTG----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out81    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out82    ----------GTGAC-TTTGT-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out83    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out84    -GATG--CGTGCGT-----T------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out85    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out86    ---------TGTGC-----GT-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out87    -GG----TGT--------------------------GCGTGTGTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out88    -AC----TAC--------------------------TGTGCGTGC----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out89    GGGTG--C--GTGT-----A------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out90    ---------GATGT-----GCGT-----GTG-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out91    -GG----TGTGTGTG-TGCGCGC-----GTTC------------AT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out92    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out93    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out94    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out95    -GG----TGT--------------------------GCGTGCTTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out96    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out97    -CG----CT---ATC-TACTGGT-----TCAT------------AGCGGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out98    ----------GCGAC-TGTGCGTGCG-------------TGTGTGTGCGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out99    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out100   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out101   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out102   -GT----------------------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out103   -TG----TGT--------------------------GCGTGTGTGC-GTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out104   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out105   -GG----TGTGCG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out106   --G----TGCGT-----GTGTGT-----GC--------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out107   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out108   -AA----T------------------------------GTGCGTACGTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out109   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out110   -AGGA--TGTGCAT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out111   -G-------AGTGTG-CGTGCTT-----GTGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out112   -------------AG-TAGGGTG------------TGCGTGCGTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out113   -GG----CGTGCGTG-T---------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out114   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out115   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out116   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out117   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out118   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out119   -GG----TGTGAGTG-TGTG------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out120   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out121   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out122   -TG----TGTGAGTG-TGTGCG----------------------CGAAG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out123   -AGAG--TGTGCGT-----T------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out124   GGATG--T--GCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out125   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out126   -GG----TGTGCGT------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out127   -GG----T------------------------------GTGCATCCATA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out128   ----G--TGTACGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out129   ---------TGT--------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out130   ----------GTGCG-CGTGTTTACA---------AGTGTGAGTGTAAGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out131   -T-------------------------------------AGTGTGTGTT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out132   -------------GG-TAGGATG------------TGCGTGCGTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out133   GGGTG--T--GCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out134   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out135   --GGG--TGTGTGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out136   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out137   -GG----TGT--------------------------GCGTGCGTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out138   -CG----TCT--------------------------GCGTTTG-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out139   ACATTCATAAGGCTG-ATTGTG----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out140   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out141   -GG----TGTGCGTG-TGT-------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out142   -------------GG-TAGGGTG------------TGCGTGCGTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out143   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out144   -GA----TATGTGCG-TGTGATA-----GAAG------------TGAGA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out145   -AG----TTGCATGG--CTACGT-----TCAT------------AGGGG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out146   -GG----TGTGCATG-TGTGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out147   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out148   -AG----TGTGCATG-TGTGT-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out149   -GG----TACGCGTG-CGTGCGT-----TCGT------------AAGAT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out150   -GTGG--TGTGTGT-----GCG----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out151   -AGGA--CGTGCAT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out152   -AG----TGT--------------------------GCGTTCGTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out153   -AGGA--TGTGCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out154   -AG----TGT--------------------------GCGTGTGTGGCTGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out155   ---------GGTGA-----GCGT-----ATG-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out156   GAG----GGTGGGT-----GGGC---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out157   -GG----TGTGC-----GTGTGT-----GCGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out158   -GA----TGT--------------------------GCGTGCGTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out159   -AA----TGT--------------------------GTGTGCGTG----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out160   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out161   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out162   -GG----AATGAGTG-TGTGTGT-----CGTG------------CATGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out163   -GG----TGTGCGTG-TGTGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out164   -GG----TGTGCGTG-CGTGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out165   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out166   -GG----TGT--------------------------GCGTGTG-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out167   CAGTG--TG----C-----T------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out168   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out169   -GG----TGT--------------------------GCGTGCGTG----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out170   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out171   -GG----TGTGC-----GTGTGT-----GCGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out172   GGGTG--T--GCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out173   -AGAA--TGTGCGT-----ACG----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out174   -GG----T------------------------------GTGTGTGTCTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out175   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out176   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out177   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out178   -AGGG--TGTACGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out179   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out180   -G-------------------------------------TGTATGCACGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out181   -GT----AATGTGTT-TATG------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out182   --------ATAGGG-----GTAG-----ACAT------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out183   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out184   --------AGGTAG-----GATG-----GTGA------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out185   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out186   -GT----GGAC-ATG-CGAGTT----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out187   ----------CAGTG-GTGACGTACC---------GTCAACAGCGAGGGA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out188   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out189   -GG----TGTGCGTG-TGTGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out190   -GG----TGT--------------------------GCGTGCGTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out191   -AGTG--TGTGCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out192   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out193   -GG----TGTGCATG-CGTGCGT-----TCAC------------AG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out194   ---------GATGT-----ACGT-----ACG-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out195   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out196   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out197   -GA----TGTGCGTG-----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out198   -----------TGTG-CGTGTGT-----GCGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out199   -GA----ATCTCTCA-AGATCTGCGGACTCAATCTTTCGGAGGTGCTCAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out200   ---------------------------------------------C----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out201   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out202   -TG----TGTGAGTG-CGTACA----------------------TGTGG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out203   -GG----AGTGCGTG-CGTGTGT-----TCAT------------GC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out204   GGT-GTGCACGTGT-----GCGT-----TTAT------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out205   -CT----CGTGTGTG-CGGTGG-------------------------TG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out206   GTG----CGCGTGT-----TCAC-----G---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out207   -GG----TGTGCGTG-TGTGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out208   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out209   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out210   -GG----TGTGCGTG-TCTGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out211   GTG-T-GCGTGTGTG-TGTGTTT-----TCATAGGAGTGATTGTACGCGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out212   GTA-GTGCGTGCGT-----GCAT-----TCAC------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out213   GTG----TGCGTGTG-TGCGTTTA--------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out214   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out215   -AGTG--AATGTTT-----A------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out216   -GG----TGT--------------------------GCGTGTGTGC-ATT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out217   -G-------TGTGTG-CGGGTGT-----GTGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out218   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out219   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out220   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out221   -AG----TGTACGTG-TGTGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out222   -CG----TGTGAGTG-TGTGTG----------------------CGT---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out223   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out224   -GA----TGTGC-----GTGTGT-----GCAT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out225   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out226   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out227   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out228   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out229   -TG----TGTGC-----ATGTGT-----GTGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out230   -TG----TGT--------------------------GTGCACGTGT-GTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out231   -AGGG--TGTGCAT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out232   GGG----TGTGCG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out233   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out234   ------------GTG-CGTGCGT-----ACAT------------AG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out235   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out236   -AA----AAAA---------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out237   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out238   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out239   -AG----TGTGC-----GTGTGT-----GCGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out240   -CGGG--TGTGTGT-----G--------CGCG------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out241   ---------GTGTG-----CGT------GTG-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out242   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out243   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out244   -GA----GTGAGTGT--ATGCGT-----G---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out245   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out246   ----------GTCTA-TT-------------------------TTTGTAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out247   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out248   -AGGG--TG-----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out249   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out250   CAACTATGAGGTGCA-TGTGGTA-----TGGT------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out251   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out252   -AA----TGTGCGTG-TGTGCGT-----CATA------------AG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out253   GTG----TGTGTGC-----GTAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out254   --------ATAGAGA-TAGGGTG------------TGCGTGCGTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out255   -GG----TCTGCGTC-TGTAC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out256   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out257   GTA----TATGCGT-----GTGT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out258   -GG----CGTGCGTT-CATGAGG-----C---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out259   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out260   ---------ATGTT-----GTAA-----CCG-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out261   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out262   GGT-G--C--ACATG-TGTTCAT-----GGTAGTGAGTGTACGTACGTGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out263   -GG----TGTGCGTG-TGTGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out264   -AG----TGTGCGTA-CGTACGT-----TCAT------------AG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out265   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out266   -GG----TGCGC-----GTGTGT-----GCGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out267   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out268   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out269   -AG----AGTGTATG-TCACTT----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out270   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out271   ------------------CG------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out272   -GG----TGT--------------------------GCGTGCGTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out273   --C----AAAATCT-----GCTC-----GTAT------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out274   -GG----TGAGTG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out275   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out276   -GG----TGTAC-----GTGTGT-----GCGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out277   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out278   -TG----TGTGCGTT-CATAAGG-----GTGA------------GT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out279   -AGGG--TGTGCGC-----A------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out280   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out281   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out282   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out283   -GG----TGTGCGTG-CGTGCGT-----TCAT------------AG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out284   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out285   -GG----TGT--------------------------GCGTGCATG----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out286   -GG----TGTGC-----GTGTGT-----GCGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out287   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out288   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out289   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out290   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out291   -GG----TGTACATG-TGTGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out292   -AA----TGAGTGTG-CGTGCGTGTTCCTTGC-CTGATCCGTCTCTATGA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out293   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out294   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out295   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out296   -CT----AGG--------------------------GTGTGCGTGTGTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out297   --------ATAAAGG-TAGGGTG------------TGCGTGCGTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out298   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out299   ---------GTGTG-----T------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out300   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out301   -GG----TGTGC-----GTGTGT-----GCGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out302   -GA----TGTGCGTG-CGTGA-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out303   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out304   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out305   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out306   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out307   -GA----ATG---TG-CGTGTGT-----GCGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out308   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out309   -AA----TGTGC-----GTGTGT-----ACAT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out310   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out311   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out312   -GG----TGTGCGTG-CTTGT-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out313   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out314   -AGGG--TGTGTGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out315   -GT----AGGGTGTG-CGTGTGT-----CCGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out316   -GG----TGT--------------------------ACCTATG-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out317   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out318   -GG----TATGCGTT-CATAG-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out319   -GG----TGTGAGTG-TGTGCATTC-------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out320   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out321   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out322   -AACG--TGTGCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out323   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out324   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out325   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out326   -GG----TGTGCGTG-CATGCGT-----GCGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out327   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out328   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out329   -G-------GACGTG-CATGCAT-----GTGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out330   -GA----TGCGTGCG-CGTGCAA-----TCAC------------AC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out331   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out332   ---------GGTAT-----TCGT-----GTG-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out333   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out334   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out335   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out336   -------------GG-TAGGATG------------TGCGTGCGTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out337   GAA-----CTTGTG-----TGTT-----TCAT------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out338   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out339   --------ATAGGGG-TAGGGTG------------TGCGTGCTTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out340   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out341   ---------------------------------------TGAGTTACTGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out342   GAGTG--T--GCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out343   -AGGG--TGTGTGT-----T------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out344   -GG----GGT--------------------------GAA----TG----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out345   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out346   -GG----TGCGTGAG-CTTGTT----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out347   -AG----CGT--------------------------GTGTGCGTG----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out348   -GT----GTGCGTGT-GTGTGAA------------TGCTTG---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out349   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out350   -AG----GGTGCGTG-C---------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out351   --------ATAGGGG-TAGAGTG------------TGCGTGCGTG----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out352   -CA----AATCGAGT-CTTTAG----------------------AGG---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out353   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out354   -AA----GCGAGTGT-ACGTGC----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out355   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out356   -GT----TGTGTATG-TGTGCGT-----TCAC------------AC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out357   ---------TTG-T-----GCGT-----GCG-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out358   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out359   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out360   ---------------------GT-----GTGT------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out361   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out362   -GA----TAT--------------------------GCGTG---C----A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out363   -TC----ATAGTGTG-CACGCAT-----TCAC------------AGGGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out364   GTGTG--T--GCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out365   GGGTG--T--GCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out366   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out367   -GG----TGTGCGTC-TGTGCG----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out368   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out369   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out370   -GA----TGTGGATT-CATAGGG-----TAAG------------TGT---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out371   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out372   GGTATGCGCTCAGT-----ACAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out373   G-----------AG-----GCGC-----CTAC------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out374   -GA----TGTCCTTA-CGCGCGT-----CCAT------------AAAG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out375   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out376   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out377   -------------GG-TAGAGTA------------TGCGTGCGTGCGTGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out378   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out379   TGA-TAGGGTGTTT-----GTGT-----AAAT------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out380   GGT----CGGATGT-----GTGT-----GCGT------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out381   ----------------------C-----ATGG------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out382   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out383   TAG----GGTGTACG-CGCG------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out384   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out385   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out386   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out387   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out388   AGG----TTTGCGT-----GTGT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out389   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out390   -GG----GTC--------------------------TGCGTGCATGAGTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out391   GGA----TAG-GGTG-TG--------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out392   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out393   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out394   -GG----TGTGCGTG-TTTGCGTTCATAG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out395   -AC----TGT--------------------------GCGTGCGTG----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out396   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out397   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out398   -T------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out399   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out400   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out401   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out402   --------------------------------------GTG--TGTGTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out403   -----------------GTGTGT-----GCAT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out404   -GA----TGT--------------------------GCGTGTGTG----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out405   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out406   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out407   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out408   GGGTA--A--ACGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out409   -------TGATTGT-----ATG----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out410   -GG----TGTGC-----GTGTGT-----GCAT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out411   C-------GTAGAT-----GCTT-----ATA-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out412   -AA----TG--------TGCTT----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out413   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out414   -GG----TGT--------------------------GCGTTTG-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out415   GTG----CGCGTGT-----GTGT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out416   -AGGA--TTTACGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out417   -------------------TGC----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out418   -GA----CGTGCGTG-CGTTCAAA--------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out419   ---------ACGGT-----GCGT-----GTT-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out420   ----------GCATG-CGTGCGT-----GCGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out421   AAG----CGTGCGT-----GTAA---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out422   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out423   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out424   -GG----TGT--------------------------GCGTGCATA----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out425   -GA--------TTTG-CGCGCGT-----ACAT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out426   -GG----TTTGAGT------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out427   -AG----TGT--------------------------GCGTGTGTGC-GTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out428   -TC----TGTGCGTG-TGTGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out429   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out430   -GA----TGT--------------------------GCGTGCGCG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out431   -GG----TGA--------------------------GTGTGTGAG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out432   GGT-GTGAGCACGT-----GCGT-----TCGT------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out433   AGG----TTTGCGT-----TTGC---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out434   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out435   -TG----TGTGTGTG-TG--------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out436   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out437   -GA----TGCGCGTG-TCTGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out438   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out439   -AG----TGTGCGTG-TGTGCGT-----TCTT------------AG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out440   -AA----TATGCTGA-GCGTGTG-----CTTC-------------TCAT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out441   -TG----TGCGTGTG-CGTTCTTAGGAGG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out442   -AGGT--ACGACGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out443   -AG----TGTGCGTG-TGTG------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out444   --G----TGT--------------------------GGATGCGTA----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out445   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out446   -GG----TGT--------------------------GCG---TTC----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out447   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out448   -GT----TGTGCATG-CATGCGT-----TCAT------------AG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out449   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out450   -A-------------------TG------------TGCGTGCG----TGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out451   -G------------------GTG---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out452   -GC----TGTGTGTG-CGTTCAT-----AGGA------------TGAATG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out453   --------------------------------------------T----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out454   -GT----TGA--------------------------GCGTGCGTGC-GTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out455   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out456   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out457   GGT----GTTGTGT-----T------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out458   -GG----TGTGCGTG-TGTGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out459   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out460   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out461   -GG----TGTGC-----GTGTGT-----GCGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out462   -AGAG--TGTGCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out463   -GA----TGT--------------------------GCGTGCATG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out464   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out465   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out466   -GA----------------------------------TTTGTGTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out467   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out468   GAGTG--T--GCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out469   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out470   -AA----TATGC-----GTGTGT-----GCGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out471   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out472   -GG-----------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out473   -GA----CGTACGGC-ACA--------------------TCAGTCTCTCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out474   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out475   TGAGG--TGTGCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out476   -GT----GTACGTG------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out477   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out478   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out479   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out480   GAG----AGTTGCG-----ACGA---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out481   -TAGG--TGTGTGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out482   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out483   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out484   -CG----TGTGCATG-C---------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out485   -AG----TTTGCGTA-CATAGTT---------------------ATAAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out486   -AG----TGTGCGTG-TGTCC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out487   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out488   TAGGG--T--GTGC-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out489   -TG----TATGGTTG-CATACA----------------------TGTGG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out490   -GG----TAT--------------------------GCG----TG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out491   -------------------------------------------GTGCGCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out492   -GG----TGTGCGTG-CGTGCGT-----TCAT------------AG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out493   -TG----CATGAATG-CGTTTG----------------------GGCAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out494   -GG----TGT--------------------------GAGTGTGTGTATTC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out495   -GG----TGT--------------------------GCGTGTATAC-GTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out496   -AAGG--GGTGTGC-----GTGA-----ATTT------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out497   -GG-----CTGCGTG-TGTGG-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out498   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out499   -GG----TGTGCGTG-TGTGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out500   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out501   ---------GATGT-----GCGT-----GTG-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out502   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out503   -GA----CGTGCGAG-TG----C-----GCGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out504   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out505   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out506   GGGTG--T--GCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out507   -GA----TGT--------------------------GCATGTGTAC-ATT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out508   G-----------GG-----TGTG-----CGTG------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out509   ---------GATGT-----GGGT-----GTG-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out510   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out511   -GA----CGTATTAG-CGGTGA-------------------------TT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out512   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out513   -TG----TGT--------------------------CCG----TG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out514   -GA----TGTGTGTG-CGTTCA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out515   GTG----TGCTTTCA-TT--------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out516   GGT-GCGCGTGTAC--------------TCAC------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out517   ---------ATGAG-----TGCA-----TGT-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out518   -GG----T----ATG-CGTGTCT-----GCAT------------TT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out519   -GG----TGTGCGTG-TG--------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out520   T-------CGAGGT-----GCTC-----ATAT------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out521   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out522   ------------GTG-CGTATGT-----TCAG------------AG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out523   -GA----TGC--------------------------GCATATTACC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out524   -AG----TGTAC-----ATGTGT-----GCGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out525   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out526   -AGCG--TGTGC--------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out527   TGGTG--T--GCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out528   -AG----TGT--------------------------GTATACTTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out529   GGGTG--T--GCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out530   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out531   -GA----TGTGCGTG-TGTGCGT-----TCAT------------A-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out532   -AG----TGTGCGTG-TGTGT-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out533   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out534   -AT----TGT--------------------------GTGAGTGTTTGTT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out535   -AG----TGCGT-----GTGTGT-----GTTC------------AT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out536   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out537   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out538   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out539   -AGAA--CGTGCAT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out540   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out541   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out542   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out543   -CA----TATGGG-------------------------------TAAGGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out544   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out545   -GG----TGTGCGT--GCATG-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out546   -GG----TATGCGTG-TGTGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out547   -AGGA--TGTGCGT-----GTGT-----GC--------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out548   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out549   --------ATAGGGG-TAGGGTG------------TGCGTGCGTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out550   -AGGT--TGTGCAT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out551   GGA----TGTGCGG-----GTGT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out552   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out553   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out554   -GG----TGTGC-----GTGTGT-----GCGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out555   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out556   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out557   -TG----TGT--------------------------GAGTGTGCG----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out558   ------------------------------AT------------TG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out559   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out560   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out561   -GG----TGT--------------------------GCGTGCGTA----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out562   ----------GCGTG-CTAGTGT-----TCAT------------AG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out563   GTGTG--CGTGTGT-----GCGT-----CTG-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out564   ---------TATAT-----GTGT-----GCG-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out565   -AG----TGTGC-----GTGTAT-----GCGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out566   -GA----TGTGCATG-----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out567   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out568   -AGCC--AGTAGGA--------------TATG------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out569   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out570   -AGGG--TATGCAT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out571   --------------------GGT-----GAG-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out572   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out573   -------TATGCATG-CGTGCGT-----TCAT------------AT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out574   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out575   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out576   -GG----TTTGCGTT-CATGAC----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out577   -------------------GCGT-----GTGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out578   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out579   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out580   -GC----TATACGTG-CATGCAT-----GCGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out581   -GG----CGTGCGTG-TGTGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out582   -AGGG--TGTGCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out583   -AGGA--TGTGT--------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out584   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out585   GGGTG--TGCGTGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out586   GGA----TGTGTGT-----GCGT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out587   -GG----TGTGCGTG-CGTGCGT-----TCAT------------AG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out588   -AA----TGTGC-----GTGCGT-----GCGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out589   -AG----TGTGCGTG-TGT-------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out590   -GT----CGTGCGTG-GGTGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out591   -GG----TGTGCGTG-TGTGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out592   TGACGTATGTG---------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out593   -GA----TGCGTGTG-CAGGCCT-----TCAT------------AAAGG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out594   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out595   -G-------GGTGTG-CGT--GT-----GTGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out596   -GG----TGT--------------------------GCGTGTGTGCGTTC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out597   -GA----TGT--------------------------GCGTGAGTG----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out598   -G-----------------------------------TGTGCGTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out599   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out600   -GG----TGTGCGGT-GTGCATT-----T---------------AT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out601   -GA----GTG--------------------------TGCGTGTATTCGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out602   -GG----TGA--------------------------GTGTGTGTG----A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out603   -GG----TGTGCGTG-TGTGCGT-----GCGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out604   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out605   -GA----TGTGCGTG-TG--------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out606   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out607   -GA----TGTGCGTG-TGTGT-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out608   -CA----TAGGATTA-CATGCG----------------------TGCGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out609   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out610   -AG----TGTGCGTG-CGTGCGT-----TCAT------------AG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out611   -GG----TGTGCGTG-TGTGA-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out612   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out613   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out614   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out615   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out616   -AGGG--TGTGTGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out617   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out618   TCG----GAGGTTC-----TCAT-----AAGG------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out619   -TA----TGCATGTG-TGGTGG-------------------------GG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out620   -GA----TGTGCCTA-TGTGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out621   -GG----TGTGC-----GTGTGT-----GCGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out622   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out623   -AGGG--T--------------------GTGT------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out624   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out625   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out626   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out627   TGA-TTT---GTGT-----CAAT-----AAAA------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out628   GGT-GTGCGTGGATG-CGTTCAT-----TGAG------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out629   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out630   -CT----GTACGCGC-GTGAG-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out631   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out632   -------GGTGCGTG-CGTGCGT-----TCAT------------AG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out633   -AGCG--TGTCTGT-----T------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out634   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out635   -GT-GTGTGGCTGT-----GCGT-----TCAG------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out636   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out637   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out638   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out639   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out640   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out641   -GA----CGTGCGTG-TGTGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out642   -GG----CGTGCGTG-TGTGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out643   -GG----CGTGTGCG-TTCA------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out644   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out645   -CA----TGTGCATC-CGTGCGT-----TCTT------------AG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out646   -GT----ATA--------------------------TGCG---CGC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out647   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out648   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out649   -AGTC--TGTTCGT-----GCG----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out650   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out651   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out652   -GG----TGT--------------------------GTATGTGTGC-GTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out653   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out654   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out655   -GA----GGTGCGTG-C--ATGT-----TCAT------------TG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out656   --------GTGCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out657   -ACGG--TGTGCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out658   -----------CAT-----T------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out659   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out660   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out661   -GG----TGTGCGTG-CGTGCT----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out662   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out663   -GT----TG-----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out664   ---------GGTAA-----GTGT-----ACG-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out665   -------AAAAAAA-----TGAC-----GTGC------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out666   -GG----CAT--------------------------G--TGTG-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out667   -AAGT--TTGCGCG-----T------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out668   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out669   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out670   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out671   -GG----TGT--------------------------GCGTGTGTGCGTT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out672   -AG----TGTGCGTA-----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out673   ---------ATGCA-----TGAG-----TGT-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out674   -------GGTGCGTG-ACTGCGT-----TCAT------------AG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out675   -GG----TGTGCGT--GTGTGT----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out676   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out677   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out678   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out679   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out680   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out681   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out682   GGG----TGTGGGGG-TGTGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out683   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out684   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out685   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out686   ------------GTG-CTT---------GCAT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out687   ---------GATGT-----ACGT-----GCG-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out688   -TG----TGTGCGTG-TGTGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out689   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out690   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out691   -GG-----------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out692   -AG-----------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out693   GGGTG--T--GCGT-----A------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out694   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out695   -TGAG--TGTTCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out696   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out697   ----------AACG-----TAGG-----CTGT------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out698   -GG----TGT--------------------------GCATGCGTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out699   -GG----TGT--------------------------GCATGCGTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out700   GG------TTGCGT-----GTGT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out701   -------------------------------------CCTGTGTGCGTTC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out702   -AA----TGT--------------------------GCG---TGC----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out703   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out704   -GG----TGTGCGTG-TGTGCGTCCATAG---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out705   -GA----GGTGTCTG-TGATGA-------------------------CT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out706   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out707   -GG----TGTGCGTG-TGTG----------GT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out708   -GG----TGTGCGTG-TATGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out709   -GA----TGT--------------------------GTGT---GA----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out710   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out711   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out712   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out713   -G-------GGTGTG-CGTGCGT-----GTGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out714   GGGTG--T--GCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out715   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out716   -GG----TGT--------------------------GCAT---TCATAGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out717   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out718   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out719   -AGAG--TGTGCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out720   -GA----TGTGCGTG-CGTAC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out721   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out722   -CA----TGTGGGTG-TGCACGG-----TTCG------------TAGGGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out723   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out724   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out725   -GG----TGT--------------------------GCGTGCGTG----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out726   -GG----TGT--------------------------GCGTGCGTT----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out727   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out728   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out729   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out730   -AA----CGTGCGTA-CGTGCGT-----TCAT------------AG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out731   -G-------T--------------------------GCGTGCCTA----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out732   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out733   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out734   -------------GG-TAGGGTG------------TGCGTGCGTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out735   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out736   TCA-TA--GGGGTA-----GGGT-----GTGT------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out737   GGG----TCGGTGT-----GCGT-----GC--------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out738   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out739   -GT----GGGGTGCG-CGTTCAT-------------------------AG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out740   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out741   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out742   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out743   -GG----TGTGA-----GTGTGT-----GCGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out744   -AG----TAT--------------------------GCGT-GTGTGCGTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out745   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out746   -TA----CGTGCTTT-CATAGA-------------------------GG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out747   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out748   -AGTG--TGTGCGT-----C------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out749   -GG----TGTGCGTG-CGTGGTT-----TATA------------GG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out750   ---------TGCGTG-CGTGCGT-----TCAT------------AA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out751   -TA----TGTGTG---------T-----GCCT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out752   ------------------GGGTG------------TGCGTTCA-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out753   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out754   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out755   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out756   ---------A--------------------------GTGTGCGTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out757   -GG----TGTGCGTG-TTATG-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out758   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out759   -GG----TGTGCGTG-TGTGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out760   -GA----ATTGCCGG-CTCGG-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out761   --T----TTGTAAGC-GACTGC----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out762   ---------AGAAC-----AGGG-----TCTC------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out763   -GT----CTGCTTGC-GTGCGT----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out764   ------------------------------------------GTGCTCA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out765   GGGTG--T--GCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out766   -GA----TGT--------------------------GCGTGTGTGCGTTC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out767   -AG----AGTGTC-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out768   -------------GG-TAGGGTG------------TGCGTGCGTC----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out769   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out770   -AG----TGT--------------------------GCGTGCGTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out771   -GG----TGT--------------------------GCGTGTGCCTTCAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out772   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out773   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out774   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out775   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out776   -AG----TGT--------------------------GCGTGCGTA----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out777   ---------TGTAT-----GTGT-----GTA-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out778   -GG----TGTGCGTG--------------CGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out779   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out780   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out781   -AGTG--TATGCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out782   -GA----GGTGGGGG-TGCGCGT-----TCAT------------A-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out783   GTGTATGCGAGAGG-----GCGT-----TTAT------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out784   -GA----TGT--------------------------GTGTGTGTGC-ATT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out785   -GT----GTGCGTGC-GT--------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out786   -GG----TGT--------------------------GCCTTTGTGC-GTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out787   -TG----TGTGC-----GTGTGT-----GCGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out788   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out789   --------GTGTGT-----CGTT-----GTG-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out790   -GA----TGT--------------------------GTGT-GCGTTCATA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out791   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out792   -TG----CCGGTCA-----------------G------------TGAAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out793   -AG----TGT--------------------------GCGTGTATG----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out794   -G-------GGTGTG-CGTGCGT-----GTGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out795   --------------------------------------------TGTGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out796   -GA----TGTATGTG-TGTGCAG-----TCTC------------TCAGA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out797   -GGCA--TGTGT--------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out798   -------------GA-TAGGGTG------------TGCGTGCGTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out799   -AGGA--TGTGCGT------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out800   -GG----TGTGCGTG-TGTGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out801   -------CTCTCGA-----CACT-----ATGT------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out802   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out803   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out804   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out805   -GG----T------------------------------GTGCTTGTGTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out806   GTATG--T--GTAT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out807   -GG----TGTGCATG-TGTGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out808   -GG----TGT--------------------------GCGTGTGTAC-GTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out809   GAGCG--T--GCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out810   -GG----TGTATGT---GTGT-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out811   ---------GGCGT-----GCGT-----GTG-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out812   -------------G-----T------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out813   -GG----TTTGCGTG-CGTGCGT-----TCAT------------AG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out814   -TA----TGTGCATG-CATGGTT-----TCA-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out815   -GG----TGTCGTAG-TGTACA-------------------------TG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out816   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out817   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out818   ---------CATGT-----ATAC-----GTT-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out819   -----------------------------AAT------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out820   GAGTG--T--GCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out821   -AT----AGG--------------------------GGTG---AGTTTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out822   CGT----TCATAGG------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out823   -AG----TGT--------------------------GCGTGTTCA----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out824   -----------------AGGGTG------------TGTGTGCGTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out825   -GC----GTGTGTTC---------------AC------------AAGAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out826   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out827   -GG----TGTGCGTG-TATGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out828   -GG----TGT--------------------------GTGTGCGTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out829   ---------TGCGT-----GCGT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out830   -CG----TGTGCGTG-TGTGCCT---------------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out831   GGATG--T--GCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out832   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out833   -TG----T----GTG-TGTGCAT-----GCAC------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out834   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out835   -GA----TGTGCGTG-TGTGCGT-----TCAT------------A-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out836   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out837   -GG----TGTGC-----GCGTGT-----GCGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out838   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out839   -GA----TGT--------------------------GCGT-GTGTGCGTC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out840   -G-------GGTGTG-CGTGTGT-----GTGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out841   -GG----TGTGC-----GTGTGT-----GCAT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out842   -------------GG-TAGGGTG------------TGCGTGCGTGCGTGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out843   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out844   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out845   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out846   -GG----TGT----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out847   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out848   -GG----TGTGTGTG-CGCGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out849   -GG----TGT--------------------------ACGTGCGTG----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out850   -CG----CATGTATA-TATAGT-------------------------GG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out851   -AGAA--TGTGCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out852   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out853   TACAG--TGTGAGT-----T------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out854   -AGGG--CGTGCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out855   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out856   -TC----TGTGTTTG-TACTGTG-----TTCT------------CA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out857   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out858   -AGGG--TGTCCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out859   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out860   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out861   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out862   -AGGG--TGTGCGC-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out863   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out864   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out865   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out866   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out867   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out868   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out869   -------AGGGATA-----GGGT-----GAGT------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out870   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out871   ------------------GGTAG------------GGTGTGTGTGCATGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out872   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out873   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out874   ---------TGTGT-----GACT-----AAG-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out875   -GG----TGT--------------------------GCGTGCGTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out876   -------------GG-TAGGGTG------------TACGTGCGTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out877   -TG----TGT--------------------------GCGTGCATG----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out878   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out879   ---------CGCATG-TGGTAAC-----AGGG------------TGAGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out880   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out881   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out882   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out883   -GA----GGTGCCAA-TGATG-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out884   -AGGG--TGTGCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out885   -AGGG--TGTGCTT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out886   -TA----CGGCCGTG-CATCCAT-----TCAT------------ATAGGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out887   -GA----TGTTCGTG-----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out888   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out889   -GT----------------------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out890   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out891   -AGGG--TTTGCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out892   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out893   ---------AATAT-----GCGT-----GTT-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out894   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out895   --G----TACACGCG-T---------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out896   -GG----CG-----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out897   -GG----TTTGCGTG-CGCGCGT-----TTAT------------AG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out898   -AG----TGT--------------------------GCGTGTGTGTTCA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out899   -GG----TGTTGTGA-ACGTT-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out900   GAT-GTGCGTACGT-----ACGT-----TCGT------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out901   ------------GTA-CGTGTGT-----TCAT------------AG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out902   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out903   -AGTA--TGTGCAT-----GT-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out904   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out905   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out906   -AA----TGTGCATG-------T-----GCAT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out907   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out908   C-------CCATAG-----GAGT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out909   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out910   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out911   ---------TGAGTA-AGTTCAT-----AGGG------------TGAGGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out912   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out913   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out914   GGG----TGTGCGCG-TGTGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out915   -GG----TGCGT-----GTGTGT-----GCGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out916   -GG----TGT--------------------------GCGTGCGTG----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out917   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out918   --------GTACAT-----GTGT-----TTAT------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out919   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out920   -GG----CGT--------------------------GTGTACCTT----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out921   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out922   -AAAG--CGTGC--------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out923   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out924   -GG----TGT----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out925   -GA----TGTTC-----GTGTGT-----GCGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out926   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out927   -GT----GTGT-----------G------------CGT--GCGTG----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out928   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out929   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out930   -TT----CATTGGGG-TAGGGTG------------TGCGTGCGTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out931   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out932   -AGAA--TGTTCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out933   -TG----CGTTCATA-GGGGGTA------------AG-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out934   -TC----TTT--------------------------CGGTGTG-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out935   AGGTG--T--GCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out936   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out937   AGGTA--T--GCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out938   -TG----TGTGCGT----TGGT-------------------------GG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out939   -GG----CATGC-----GTGTGT-----GCGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out940   -GT----CGG--------------------------TAGGGTGTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out941   ---------GATGT-----ACGT-----GAG-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out942   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out943   -GT----TGTGCGTG-TGTTCAT-----ACGG------------GT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out944   -GA----GTTCATAG-AGT--------------------TGAATGTATG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out945   ----G--T--GCGA-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out946   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out947   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out948   -AG----TGTGCG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out949   -AGAC--TTTGCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out950   -TG----TGT--------------------------GCGTGTGCAC-ATT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out951   AGG----TGTGTAT-----GCAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out952   -GG----TGTGCATG-TGTGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out953   -AG----TGT--------------------------GTGT-GCGCGCGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out954   -AGAG--TATGCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out955   GCT-GTGCGTGCGTG-TGCACGT-----TTAT------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out956   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out957   -AA----TACGTGTG-TTCGCGC-----TCAG------------AGGCG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out958   -G------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out959   -GCAG--GGTGT--------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out960   -GG----TGTGCGTA-CGTG---------CAT------------TT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out961   -AGGG--TATGCGT-----T------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out962   TGG----TATGCGT-----GTGT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out963   -AG----TGT--------------------------GTGTGCGTG----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out964   -GG----TGTGCGTG-TGTGCGT-----TCAA------------TA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out965   -AGGG--TCTGCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out966   ---------GATGT-----GCGT-----GCG-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out967   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out968   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out969   -GG----TGTGC-----GTGTGT-----GCGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out970   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out971   -GG----T--------------------------------ATGCGTTCAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out972   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out973   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out974   -GT----CTT--------------------------AAGGTAGGGG-GTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out975   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out976   -GG----TGAGTGTA-CGTGCGT-----GTT-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out977   AGC-TTAACTCGAA-----GATG-----CTCA------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out978   -AGAG--TGTGCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out979   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out980   -------------AG-TAGTCTG------------TGCGTGCGTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out981   -GG----TGTGCGTG-TTTGCGT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out982   ----------CTGCA-TT--------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out983   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out984   TCACGGTTTAAA--------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out985   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out986   -GG----TGT--------------------------GCGTGCGTG----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out987   -GG----TGTGC-----GTGTGT-----GCGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out988   -GG----TGTGCGTG-TGTGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out989   -GG----TGTGCGTG-CGTGCGA--------T------------CT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out990   GGT-----GTGCGT-----GTTT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out991   GGT-GCGTGTGCGT--------------TCTT------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out992   -AA----TGAGTGTA-CGTGCCT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out993   -GG----TGT--------------------------ACGTGCGTG----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out994   -GT----GTGC-----------G------------TGCGTGCGTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out995   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out996   -GG----TGT--------------------------GTGTGCGTA----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out997   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out998   -GA----TGTGCGTG-TGTGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out999   -G-------CA--TG-TGCGTGT-----GTGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1000  -GA----TGT----G-TGTGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1001  ---------CGTGT-----GTGT-----GCG-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1002  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1003  ---GA--GCATATG-----T------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1004  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1005  -AGGG--TGTGCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1006  -AGTG--TGTGCAT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1007  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1008  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1009  -AC----G-CGCGTG-CGTGTG----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1010  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1011  -AG----TGTGCGTC-CATAGAG-----GTGA------------GT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1012  AGT-----TGGCGC-----GCGT-----TCAA------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1013  -GA----TTTTCGTG-TGTGCGT-----TCAG------------AG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1014  -------CTATGGG-----TAGT-----GTAT------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1015  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1016  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1017  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1018  -GG----TGTACGTG-CATTCGCGCG---------TTCATAAATCTCAGA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1019  -GA----TGT--------------------------GCGTGTCTACATCC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1020  -AA----TATGC-----GTGTGT-----GCGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1021  -GA----TTGTTTATGCGTGCGT-----TCAT------------AGAGA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1022  ---------GT---------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1023  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1024  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1025  ----A--AATGTGT-----GAGT-----GTG-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1026  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1027  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1028  GGA---TAGATTTT-----GCGT-----GTGT------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1029  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1030  -GA----TGTGC-----GTGTGT-----GCGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1031  -GA----TGT--------------------------GCGTGCGTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1032  -GA----TGT--------------------------GCATGCGTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1033  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1034  -GG----TGT--------------------------GCGT-GTGTGCGTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1035  -GG----TGTGCGTG-TGTGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1036  -GG----TGTCGTAG-TGTACA-------------------------TG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1037  -AGGG--TGTGCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1038  -GG----TGT--------------------------GCGTGCGTG----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1039  -AG----TGTGCGT--GCGT------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1040  -GG----TGTGCGTG-CGTCCGT-----TCAT------------AG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1041  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1042  -GG--------TGTA-TGTGCTT-----GTGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1043  -------GCTGCGT-----T------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1044  -GG----TGCGTGTG-TGTGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1045  -GC----TGTGCCTG-CG--------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1046  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1047  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1048  ---------GTGGG-----TGTG-----TCT-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1049  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1050  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1051  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1052  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1053  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1054  ----------CACAG-GACGAG--------------------------TG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1055  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1056  ------------------------------------TGCATATGTGCATT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1057  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1058  -GT----TGTGCATG-ACTGCGT-----TCAT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1059  -CA----TGTGCG-------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1060  GGT-G--C--ATTTG-TGTGTGT-----TTATGTAGGAGGTGCTCATAGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1061  --------CTGTGTC-TGT-------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1062  ----------ACGCG-TG-----------------------TTTGTGAGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1063  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1064  -GG----TGT--------------------------GCGTGCGTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1065  -TG----TGTAC-----GTTTGT-----GCAT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1066  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1067  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1068  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1069  -GA----TGTGCGTG-TGTGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1070  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1071  -GG----TGTGCGTG-CGTGCGT-----TCTT------------AG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1072  -GG----TGT--------------------------GCGTGTGTGC-GTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1073  -GG----TGTGCGTG-TGTGCGT-----TCAT------------AG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1074  -AA----CGT--------------------------GCGTGCATGC-GTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1075  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1076  -G-------ATTGTG-CGTGCGT-----GCGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1077  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1078  -GG----TGT--------------------------ACGTGCGTG----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1079  -TG----TGAGTGAG-TGCGTG-------------------------CG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1080  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1081  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1082  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1083  -GG----TGT--------------------------GCGTGTT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1084  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1085  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1086  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1087  -----------GTA-----GAAA-----TACG------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1088  ----A--TATGGAT-----AAAA-----TATG------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1089  TAT-G--T--GCGTT-CAT-------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1090  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1091  GGTATGCGTT-AGT-----ACAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1092  -GG----TGTGC-----GTGTAT-----GCGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1093  ----T--AGGGTGT-----GCGT-----GTG-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1094  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1095  -AG----TGTACATG-CGTGCCT-----GTGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1096  ---------GTGTG------CGT-----TCA-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1097  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1098  -GA----TGT--------------------------GCGTGCGTG----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1099  -GT----TGTGC-----GTGTGT-----GCGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1100  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1101  -GG----TGT--------------------------GCGTGTGTG----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1102  -AG----TGTAC-----ATGTGT-----GCGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1103  GGGTG--T--GCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1104  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1105  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1106  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1107  -AGAA--TATGTGT------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1108  GGGTG--T--GCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1109  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1110  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1111  -GG----TGT--------------------------GCGTGTGTG----A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1112  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1113  -AG----TGTGCGTG-TGTGT-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1114  -GC----TGTGCGTG-TGTGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1115  GGGTG--T--GCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1116  -AGGG--TGTGCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1117  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1118  -GG----TGC--------------------------ATGTGTGTGC-GTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1119  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1120  -GG------T--------------------------GTGCGTGTG----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1121  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1122  GGATG--T--GCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1123  -GG----TGTGCGTG-TGTGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1124  -GG----TGT--------------------------GCGTGCGTG----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1125  -AGAG--TGTGCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1126  -AA----TTT--------------------------GCG---TGC----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1127  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1128  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1129  -GA----TGT--------------------------GTGTGCGTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1130  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1131  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1132  GCG----TCTGCGT-----TTG----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1133  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1134  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1135  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1136  -G-------AGTGTG-CGTGCGT-----GTAT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1137  AATTTACTGCGTGTA-TT--------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1138  -GG----TGT--------------------------GCGTGCGTG----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1139  ---------------------------------------AGTCTCTCGAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1140  GGGTG--T--GCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1141  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1142  -AGGA--TGTGCAT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1143  GTA----TATGCGC-----GTGT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1144  -AG----TGTTCGTG-TGTGTT----------------------TGGGA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1145  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1146  -AG----T------------------------------GTGCGTTTGTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1147  -GG----TGTGCGTG-----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1148  ----------------TAGGGTA------------TACGTGCGTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1149  -AG----TGTGCCTG-TGTGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1150  ---------GGTGT-----CGTC-----TGT-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1151  -TG----TGTAAGTG-CATGTG----------------------CGATG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1152  -GA----TGTGC-----GCGTGT-----TCGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1153  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1154  -GA----TGT--------------------------GCGTGTGTGCGTTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1155  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1156  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1157  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1158  -TA----TGTGCGTG-TGTGTG----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1159  -GG----TGTGCGTG-CGTGCGT-----CCAT------------AG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1160  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1161  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1162  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1163  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1164  -------------GA-TAGGGTG------------TGCGTGTGTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1165  -GT----TGTGCGTG-CGT---------GCAT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1166  -GA----TGT--------------------------ACGTGCGCG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1167  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1168  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1169  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1170  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1171  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1172  -GA----TGTGCGTG-TGCGTTC-----GTAG------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1173  CTGTG--T--GACT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1174  ---------GATGT-----GCGT-----GTG-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1175  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1176  -GG----TGTGAGTG-TACGCGC-----GTGT------------T-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1177  GAT-A--T--GCCTG-TACGTTC-----ATAAAAATGAGCGCGTATGA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1178  -GG----TGTGCGTG-TGTGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1179  -GG----TGAGTGT--ACGTGC----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1180  -GA----TGTGT-----GTATAT-----GTAT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1181  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1182  -GA----TGTGCGTG-TGTTC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1183  -AGGG--TGTGCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1184  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1185  -TCGG--TGTGCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1186  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1187  -GG----TGT--------------------------GCGTGCGTGCGTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1188  -AG----TGTGC-----GTGTGT-----GCGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1189  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1190  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1191  -TGAG--GAGTGCA-----T------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1192  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1193  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1194  -GG----TGTGCGTG-TGTGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1195  -G-----------------------------------TGTGTGTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1196  -GG----TAGGGGTG-AGTACGT-----GCAT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1197  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1198  -AG----ATGCACAC-ACATTCA-----CATA------------GACGA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1199  -GG----TGT--------------------------GCGTGTGTGC-GTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1200  ---------------------------------------GGTCTCTTGAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1201  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1202  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1203  -G------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1204  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1205  -AGTG--TGTGCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1206  -GG----TGTGCGTG-TGTGCG----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1207  TAGGG--TGTGCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1208  -AGGG--GGTGTGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1209  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1210  -GA----TTT--------------------------GCG---TAC----A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1211  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1212  -TG----TGTGCGTG-TGTAC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1213  --------------------------------------------CTCGG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1214  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1215  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1216  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1217  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1218  ---------ATCACG-TATTTA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1219  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1220  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1221  -TG----TGT--------------------------GTGTTCATAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1222  GGCGCG-----CGT-----GCGT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1223  -CG----TGTGCGTG-TG--------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1224  -AG----TGT--------------------------GAGGGCGTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1225  -GG----TGTGGTAG-TGTACA-------------------------TG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1226  -AG----CGT--------------------------GCG----TG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1227  TGT-CTTTTGGAAG-----TGCT-----AATA------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1228  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1229  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1230  -GT----CAT--------------------------AGGGGTGAG----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1231  ---------GACGT-----GCG----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1232  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1233  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1234  GGG----TGTGCGT-----GTAT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1235  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1236  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1237  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1238  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1239  GCGTG--T--GCAT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1240  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1241  -GT----TGT--------------------------GCGTGTG-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1242  -GG----TGTGCGTG-TGTGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1243  --------ATAGGGG-TAGGGTG------------TGCGTGCGTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1244  -TG----TGC--------------------------GTGC---GTGCATT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1245  -TA----GGGCGTAC-ACGTGT----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1246  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1247  -GG----TGT--------------------------GCGTGCGTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1248  -GA----T------------------------------ATACGTGTGTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1249  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1250  GGGTG--T--GCTT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1251  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1252  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1253  -GA----T------------------------------GTGCGTGTGTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1254  -GA----T------------------------------GTGCGTGTGTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1255  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1256  -GG----TGTGCGTG-CGTGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1257  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1258  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1259  -GG----TGTGCGTG-TG--------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1260  -GT----GTGTGAGT-CCTTGT----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1261  ------------------------------------------TGCACATT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1262  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1263  -GG----TGTGCTAG-GGGTGAG-----TGTA------------AC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1264  -AGAG--TATGCGT-----T------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1265  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1266  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1267  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1268  --------ATAGGGG-TAGGGTG------------TGCGTGCGTG----T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1269  ---------GATGT-----GTGT-----G---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1270  -GG----TGTGCGTG-TGTGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1271  -GA----TGT--------------------------GCGTTCTTG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1272  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1273  GATGTATGTGCG--------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1274  -CT----AGG--------------------------GTGTGCGTGTATG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1275  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1276  -GG----TGTGCATG-TGTGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1277  -------------------CGC----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1278  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1279  GGGTG--T--GCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1280  -GGGG--TGAAT--------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1281  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1282  -GG----TGTGCGTG-TGTGCGC-----GTGT------------TG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1283  -G-----TGTATGCG-CGTGTG-----------------TGAGCGTCTGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1284  GTGAT--AGAATGT-----GCGT-----GTG-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1285  -AG----TGT--------------------------GCGCGCATG----C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1286  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1287  GGGTG--T--GCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1288  -GG----TGT--------------------------GCGTTGGTAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1289  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1290  -GG----GGTGAGTG-TACGC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1291  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1292  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1293  -GA----TGTGCGTT-CATAGGG-----GTGA------------GT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1294  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1295  -GT----GCGTT-----TGTAC----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1296  -GG----TGT--------------------------GCGTGTGTGC-ATT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1297  -AG----TGT--------------------------TCGTTCATAG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1298  ---------GGTGA-----CTAT-----TCG-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1299  -GA----TGTGCGCG-CGTTCGT-----CG--------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1300  -GA----TGTGC-----CTGTGT-----TCGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1301  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1302  -AAGG--TGTATGT-----T------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1303  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1304  ---------GT---------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1305  -GG----TGT--------------------------GCG----TG----G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1306  -G------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1307  -GT----GTG-C-----GTGTGT-----GCGT------------TC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1308  -GG----TG-----------------------------------CTTGTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1309  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1310  TAG----CCGAATA-----GGAT-------GT------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1311  GGA----TATTTGT-----GTGC-----GCAT------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1312  -GG----TCT--------------------------ATGTGTA-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1313  -AGGG--TGTCCGT-----G------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1314  AGA----TGTGTGT-----GCAC---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1315  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1316  -GT----GTA--------------------------CGCG---CGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1317  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1318  -TAGG--GTGTGCG-----T------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1319  -GA----TGTGCGTG-CATGCGT-----TCAT------------AG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1320  -GT----TGT----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1321  -GC----TGTGTGTG-CGTT---------CAT------------AA----

GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out0     ----G--C-GT--TCACGAGGATGAG----TT-CCAC----------GTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1     --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out2     ------------------------------GT-C----T----GCGTGCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out3     --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out4     --------------------------AGAGTC-AAGTGTA---C--TTGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out5     ----GTAGGAT--GTGCGTGCGTGCGT------TGGTGT----ACGT---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out6     -----G----------ACGA-----------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out7     --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out8     GTTCATAG-----------------G---GGT-GAGTGT----GTATACG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out9     --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out10    ----------------------TTCA---TAG-GGGTGA----GTGTACG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out11    -----T----------TAGTGGTGA-----GA-GTACGT----GTGTA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out12    -----A----------TAGGGATGA-----GT-GTGCGC----TCGTGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out13    CATAGGAATGA------------GTG---TAC-ACGCGT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out14    --------------CATAAAAGTGAG---TGT-ACA----CGCATGTTTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out15    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out16    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out17    ------------------GGGATGAG---TGT-ACG----CTTGTGTTTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out18    -----TTGAGT--AT--ACG-----------T-GTG--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out19    ---------------------------------GCTCAT----CGGTGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out20    CTTCATAG----------GGGTGAGT---GT--ACG--------TGTGTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out21    ----CT-----------------------------------GT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out22    ---------------------ATAGG---GGT-GAGTGT----AATCG-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out23    CATATGGGTGA------------GTG---TTT-GCGCGT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out24    -------------------------G---GAT-GAGTGT----ACGCA-T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out25    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out26    GTTCATAG-GG------GTGAGTGTG------------------CGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out27    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out28    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out29    GTTCATAT-TG------GTGAGTGTA---G---------------GTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out30    -------------------------------------ATTAGTGTACGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out31    -----A----------CAGGGATGA-----GT-GTACGC----GCGTGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out32    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out33    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out34    -----GTGCGT--TCATAG-------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out35    -----A----------TAGGGGTGA-----GT-GTGCGT----GCGTACT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out36    ------TGCGT--TTTTAGA---------GAT-GAGTGT----ACAA-GC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out37    CATACGTGTTT--TTATATGGGTAAA---TGT-A-C----TGTGTGTTTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out38    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out39    -----T-GTGC--GTGGGAG--TG-------T-ATG--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out40    -TAGGGATAGG------GTGTGAGTG---TAC-CCGCGT----GT-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out41    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out42    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out43    ----G--C-CT--GCATTC---GTAGG--TTC-GAATGT----ACGTACG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out44    --------------CATAGGAGTGAG---CAT-ACA----CGCGTGTTAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out45    -----------------GTTCATAGG---GGT-GAGTGT----ACGCG-T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out46    -----G----------GATG---AG-----TG-T----A----ACGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out47    ----G--C---------GTTCATAAG----AT-GA-ATA----TACGCGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out48    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out49    CATAAGGGTGA------------GTG---TAC-GCGCAT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out50    -----A----------TAGAGGTGA-----AT-GTATGC----GCGTGG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out51    --------------------------------------T----ACGC-AT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out52    -------------------GGTTTACATTTGT-GTATTCA--GAGAAGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out53    GTTCATAG-GG------ATGAGTGTG------------------TGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out54    GCTCTTAG-AG------GTGAGTGTG------------------TGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out55    GTTCATAG-GG------GTGAGA----------------------GTGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out56    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out57    -----A----------TAGAGGTGA-----GT-ATTCAC----GCGTGTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out58    --------------------------AAGAAG-GAGCGTG---C-GTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out59    ------TCTGC--GTTTGTA------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out60    -----------------GTTCATAGG---GGT-GAGTGT----ACCCA-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out61    ------TGTGT--TCATAGGGACGAG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out62    ----CATGTGT--TCATAGGAGT----------GTGTGC--GT------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out63    GGTTAGGATAC--GCGTGTTTACAGT--------CATAG----GCACGAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out64    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out65    -----G----------GATACTC------------------------GCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out66    GTTTT---------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out67    -----G----------AGT-------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out68    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out69    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out70    GTATTGCGTTT--A------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out71    ----G--C-GT--GTGTTC---ATATG--AAT-AAATGC----ACGTGCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out72    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out73    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out74    ----CATACAT--TCATAGGGGTGAG---TGT-GAGTGCGCGT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out75    ---------------GCGTTCATAGG---GGT-GAGTGT----ATGC--G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out76    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out77    ----CGTGTGT--TCATAAGGGTGAG---TGT-GCGTGC--GT------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out78    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out79    --------------------------ATAGGG-AAAAGTG---T-ATGAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out80    GTTCTTAGAAG------TGGATGTGT---T---GTGAGC-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out81    ------------------------------------TGT----GCGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out82    -----------------CAACCTTAT---GCT-ATGTCG----CCTTAGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out83    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out84    --------------CATAGGGGTGAG---TGG-GCA----TGCATGTGTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out85    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out86    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out87    GTTCATAG----------GGTGACTG----T--GCG--------TGCGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out88    TGCGTTCA--------------TATG---GGT-GAGTGT----GCGT---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out89    ----CGTGCGT--TCATAGGGGTGGG---TGT-ACGTGCGTGT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out90    ------AGCGT---------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out91    -----A------------GATGTGA-----GT-ATATGC----ACGTGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out92    -------GTGC---GGTCATAGGGAG---CGT-ACGTGAGTGTGTGTGAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out93    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out94    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out95    GTGTGTTC-----------ATAAGGG---T---GAGTGT----GCGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out96    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out97    ATAATGCATGC--GTGCGTGCTTG-------T-GTT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out98    G-------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out99    -------------------------------------------ACGT-GC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out100   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out101   -------------------------------------------CATG-TG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out102   TACGTGCG--------------TGTG---T--------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out103   CATAGGGGTGA------------GTG---TAC-ACGCGT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out104   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out105   ------------------TTCATAGG---GAT-GAGTGT----ACGCG-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out106   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out107   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out108   CGTTC--ATA------GGGATGAGTG---TGT-GAG-CG-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out109   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out110   ----CGTGCGT--TCATAGGGATGAG---TGT-ATGTACGCGGGGA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out111   -----T----------TAGAGGTGA-----GT-GTGCGT----GCGTGCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out112   GTTCATAG-GG---------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out113   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out114   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out115   -----TGTGGT--TCACAGG---------TGT-GGGTGT----ACGT-GC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out116   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out117   ------------------GAAGTGAG---TGG-ACG----CTCGTGTTTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out118   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out119   ----------------CGTTCATGGG---GGT-GAGTGT----ACGCG-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out120   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out121   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out122   -----CTGTGT--GTATGTCTA---------T-GTT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out123   --------------CATAGGGGCGAG---TGT-ACG----CGCGTGTTGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out124   ----TGTGCGT--TCATAAGGATGAG---TGT-ATGCGCATGT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out125   --------------------GGATGA---GTG-ACG----CGCGTGTTTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out126   ---------GT--GTGCGTTCATAGG---GGT-GAGTGT----ACGCG-T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out127   ATGGT--GA------------GTGTA---CAT-GTG-TG-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out128   ----CGTGCGT--TCATAGGG------------------------ATGAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out129   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out130   GAATGCCGTAA--GCGTTTGCGTTGT---ACT-GTGTTA----CTAAAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out131   CATTT--ACA------GGGGTG---------------AG-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out132   GTTCATAG-GG------ATGAGTGTA---AC------------GTGCGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out133   ----TGTCCGT--TCATACGGGTCAG---TGT-ACACGCGTGT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out134   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out135   ----CGTGCAT--TCATAGGGGTGAG---TGT-TCGTGCAT----GTTTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out136   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out137   GTTCTTAG----------GGGAGAGT---GTA-CCG--------TGGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out138   TACTGTGTTCC------TCAAAAAAA---AA-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out139   ----CGCGTGT--GTGTTTTTTTTGAAACGGT-GCG----------TGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out140   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out141   -------------------------------------GC----ATTCAT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out142   GTTCATAG-GG------GTGAGTGTA---C---------------GTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out143   --------------CATAGGGGTGAG---TAT-ACATGCGTGTGTGTGAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out144   ---------GT--AC--G--------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out145   -----TGAGTT--GT--GTG-----------C-ATA--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out146   -----------------GTTCTTAGG---GGT-GAGTGT----TCAGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out147   --------------TCATAGGGTGAG---TGT-TCA----AGCAGGTTTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out148   -----------------GTTCATAGG---GGT-GAATGT----TTGCA-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out149   -----GAATGT--AT--GAC-----------C-ACG--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out150   ------CGCGC--GCGCGTTCAGGGG---TGA-GTGTTCGTGGGTGTTCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out151   ----CGTGTGT--TCATATGGGTGAG---TGT-GCGTGC--GT------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out152   GTTCATAG----------CGTGAGTG---TAC-GT---------CGTGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out153   ----TGTGCGT--TCATAGAGTGAGT---ATA-TG-CGC--GT------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out154   GTGCGTTCATA------GGGGTGAGT---GTA-CGCGCG-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out155   ------CGCGT--GTTGTGAG---------------CGT----------C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out156   ----C--C-GT--GCGTTC---ATAGA--GGT-AGGCGC----ACTTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out157   -----A----------TAGGGGCGA-----GT-GTACAT----GCGTGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out158   AGTTCGTA----------GGGGTGAG---TGT-GCG--------TGCGGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out159   ATTCATAG-----------------G---GGT-GAGTGT----GCGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out160   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out161   -GTGTGTTGCG--TTCACAGGATAAG---TGT-ACG----TGCTTGTGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out162   -----TTGCGA--GC--ATT-----------T-GTG--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out163   -----------------GTTCATAGG---GGT-GAGTGT----ACGCA-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out164   -----------------GTTCATAGG---AGT-GAGTGT----ACGCG-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out165   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out166   TGCGTTCATAT------GGGTGACCG---TAC-GCGCGT----GT-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out167   ----TGTGTGT--TCATAGGGTTGAG---TGA-ACGCGCGTGT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out168   --------------------------------------TA---C-ACGGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out169   GTTCATAG-GG------GTGAGTGTG------------------CGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out170   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out171   -----A----------TAGTGGTGA-----GT-GTACGC----GCGTGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out172   ----CGTGCGT--TCATAGGGGTGAG---TGT-ACGTGCGTGT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out173   ------GCGTT---CATATGGGTGAG---TGT-ACGTGCGTGTGTGTGAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out174   CGTTT--ACA------GGAATGAGTG---TAC-GTGGAT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out175   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out176   ---TTACATGT--GTGCGTTCATA-AAGATGA-GTGTTCT------TGCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out177   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out178   ----TGCGTGT--TCATATGGGTGAG---TGT-ACGCGCGT---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out179   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out180   GTTGTGAGTG------------------------TCTGG----ATTTGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out181   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out182   ----GTGTGTG--TCCATAGGGTGACC------GTATGT----GCAT---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out183   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out184   ----G-----T--GTGCGTGCATGT-------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out185   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out186   ----------------------TG-------T-GAG--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out187   GATGCTCATAT--GG--GTAGATGGA---CTT-GTGTGC----ATTCAT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out188   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out189   -----------------GTTCATAAG---GGT-GAGTGT----ACGCA-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out190   ATTCATAG-GG------GTGAGTGTG------------------TGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out191   ----TGTGCGT--TCGTAGGGGCGAG---TGT-ACGCGC-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out192   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out193   -----G----------GGTGAGTGT-----AC-G------------TGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out194   ------TGTG----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out195   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out196   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out197   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out198   -----A----------TAGGGGTGA-----GT-GTATGC----GCGTGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out199   AGGGATAGGAT--GCGCGTTCATATG---GGT-GAGTGT----ATGTG-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out200   -----A----------TAGGGATGA-----GT-G----T----ACGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out201   -----------------------------------GTGT----AAGC-GC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out202   -----TACTGT--GTGGATGTG---------T-GTG--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out203   -----G--------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out204   --------------------------GCGGGT-GAGTGTA---C--ACGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out205   -----T-GCGG--GCATGCATGTG-------T-GCG--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out206   ------------------AAGGTGAGT------GTACAT----GTGTGTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out207   -----------------GTTCATAGG---GGT-GAGTGT----ACGCA-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out208   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out209   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out210   -----------------GTTCTTAGG---GGT-GAGTGT----ACGCA-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out211   GTGGTGTGCGT--ATCTGTGTTTGCACAGTG-------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out212   --------------------------AAAGAT-GAGTGTA---C--ATGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out213   ----------------------TAGG---GGT-GAGCGT----GCGCG-T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out214   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out215   ----CA----------------GGGG---TGA-GTGTACCCGC------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out216   CATAGAAGTGA------------GTG---TAC-GCACGC-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out217   -----A----------TAGGGGTGA-----GT-GTGCGT----GCGTATT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out218   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out219   ---------------------------------GATTTA----CATGCT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out220   --------------------------------------------GCA-CG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out221   -----------------GTTCATAGG---GGT-GAGTGT----ACGTG-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out222   -------------------CTA---------C-GTT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out223   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out224   -----A----------TACGGATGA-----GT-GTACGC----GTGTTT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out225   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out226   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out227   ---------------------------------AAC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out228   -------------------------------------------CGTG-CG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out229   -----A----------TAGGGGTGA-----GT-GTACGC----GCGTGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out230   CATT------------GGGATGAGTG---TAC-GCGCGT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out231   ----CGTTCCT--AGAGCTGAGTGCA---CGT-TCGTAT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out232   ----------T--GCGTTT---GTAGA--GCT-GAATGT----ACGTTTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out233   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out234   -----G----------GGT----GA-----GT-G----T----ACATGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out235   ----------------------------------ATTGTA---C-ATGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out236   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out237   --------------CGTAAGCGTGAG---TGC-ATG----CGCATGTTTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out238   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out239   -----A----------TAGGGGTGA-----GT-GTTCCC----ACGTGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out240   TGCGCGGGCGT--TAATAAGGGTGAG---TGT-ACA----CACGTCTCTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out241   ------T-------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out242   ---------------------GTGAG---TTT-ACG----CGTGTATTTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out243   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out244   -----------------------------------------------TG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out245   -----------------------------------GTGA----GTGTACG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out246   GATGTTTCTAA--AAAAAA-------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out247   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out248   --------------TGCATACGTGGG---TTA-GTGTGTGTGTGTGTGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out249   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out250   ---TTGCGTGT--GTGCGTTCATA-ATAGTGA-GTGTATGTCAATGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out251   ---------------ATAGG---------GGT-GAGTGT----ACGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out252   -----G---------------ATGA-----GT-GTACAT----GTGTTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out253   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out254   CTTCATAG-GG------GTGAGTGTA---C---------------TTTCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out255   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out256   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out257   ----G--C-CT--TC------ATGAC----GA-GT------------GTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out258   -----------------------GA-----GT-G----------TACGTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out259   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out260   ------TCTAC--GTTTGTA------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out261   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out262   GCTGTG--------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out263   -----------------GTTCATAGG---GGT-GAGTGT----ACGCA-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out264   -----G----------GGTGAGTGT-----CT-G------------TGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out265   --------------------------------------G----AGACAC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out266   -----A----------TATGGGTGA-----GT-GTACCT----GCGTATT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out267   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out268   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out269   -----------------CATAGG-------GT-GAGTGT----GTGC---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out270   --TGTGTGAGT--TCATAGG---------GAT-GAGTGT----ATGC--G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out271   --TGTGTGCGT--TCTTAGG---------GGT-GAGTGT----ACGC-GC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out272   GTTCATAT----------TGGTGAGT---GTG-TG---------TGCTTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out273   ----GGGT-GT--TCGCGTTCATAGG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out274   --------------------------------------A----GCGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out275   ----------------------------------TCCG------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out276   -----A----------TATGGGTAA-----GT-GTGCGC----GCGTGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out277   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out278   -----GTACGT--TCATAAGGGTGA-----GT-GTACGT----GCGTGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out279   ----TGTGCAT--TCATACGGGTGAG---CTT-AAACGT--GT------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out280   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out281   ---------------ATGAG---------GAT-GAGTGT----ACGC-GC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out282   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out283   -----G----------GGT----GG-----GT-G----T----ACGCCCC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out284   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out285   GTTCATAG-GG------GTGAGTGTG------------------CGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out286   -----A----------TAGGGGTGA-----GT-GTACGC----ACGTGC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out287   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out288   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out289   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out290   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out291   -----------------GTTCATAGG---GGT-GAGTGT----ACGCG-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out292   GGTGCTCATAG--GGGTAGAG-------------TGTGT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out293   ---------GC--TCATAGG---------GGT-GAGCGT----ATGC-GT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out294   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out295   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out296   CGTTC--CTC------GGGTG-AGGG---TAT-GAG-CG-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out297   GTTCATAG-GG------GTGAGTGTA---C---------------GTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out298   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out299   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out300   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out301   -----A----------TAGGGGTGA-----GT-GTACGT----GCGTGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out302   -----------------GTTCATAGG---GAT-GAGTGC----ATGCG-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out303   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out304   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out305   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out306   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out307   -----A----------TAGGGGTGA-----GT-GTACGC----TCGTGTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out308   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out309   -----A----------TAGGGACGA-----GT-GTATGC----ACGTAT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out310   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out311   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out312   -----------------GT-------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out313   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out314   ----TGCGCGT--TGATAGGGGTGAT---TGT-ACGCGTGTGTCG-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out315   -----A----------TAGGGTGA------GT-GTATGC-----GCGTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out316   TGTGTTCATAG------GAGTGAGTG---TAC-GCGCGT----GT-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out317   ------------------------------GT-GAGTGT----ACGC-GC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out318   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out319   ---------------------TTAGA---GAAGGAGTGT----ACGCG-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out320   ----------------------AGTG---TAT-GCG-TG-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out321   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out322   ----CGTGCGT--TCATAGGG--------------GTGAGTGTATGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out323   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out324   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out325   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out326   -----T----------TTGGGATGA-----GC-GTACGT----GCGTGTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out327   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out328   --------------------TGATTG---TTC-ACG------------CG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out329   -----A----------TAGGGGTGG-----GT-GTGCGT----GCGTACT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out330   -----G----------GGCGAGTGT-----A-------------CGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out331   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out332   ------TTCGT--TCGTGTATGCGTGT--GTT-GCGAGT----------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out333   -----------------------------GAT-GAGTGT----ATGT-GC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out334   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out335   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out336   GTTCATAG-GG------GTGAGTGTA---C---------------GTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out337   --------------------------ATGCGT-GACTGTA---C-ATGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out338   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out339   GTTCATAG-GG------GTGAGTGTA---C---------------GTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out340   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out341   GTTTT---------------------------------------TCAAT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out342   ----TGTGTGT--TCGTAGAGGTGAG---TGT-GCGTGCGTGC-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out343   ----CGTCTGT--TTTTAGGAATGAG---TGT-TTGTGT----------T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out344   A-----------------------CG---TGG-GTACGT----GCGCATG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out345   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out346   -----------------CATATG-------GG-GTGA-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out347   ATTCATAG-GG------GTGAGTGTG------------------TGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out348   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out349   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out350   -----------------GTTCATAGA---GGT-GAGTGT----GTGCG-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out351   ATTCATAG-GG------GTGAGTGTA---T---------------GTGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out352   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out353   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out354   -----------------GTTCATAGA---AAC-GAGTTT----ACGCGC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out355   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out356   -----A----------GGA----CT-----GA-G----T----GGGTGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out357   ------TG------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out358   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out359   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out360   --------------------------GTGCAC-CTTCATA---C-TGCTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out361   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out362   AGCGTTCA--------------T-AC---GTG-TGATTT----ATGTGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out363   -----GAGTGT--CC--GTA-----------T-GTA--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out364   ----TGTGCGT--TCATAAAGGTAAG---TGT-ACGCGCGTGT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out365   ----CGTGCAT--TTATGGGGATTAG---TGT-GCGTGCGTGT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out366   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out367   --------------------------------------------TTAGG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out368   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out369   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out370   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out371   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out372   -------------TTATAGTGGTGAGTTT------GCATG--C-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out373   ----GTGACGT--TTATAGGGATGAGC------GTACGC----GCGT---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out374   -----------------CTGAA---------T-GTG--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out375   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out376   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out377   GTTCATAG-GG------GTGAGTATA---CGT-GCGT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out378   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out379   --------------------------ACGAAT-GACTGTA---C-GCATG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out380   ----CAGT-GC--TTGCGCTCATAGG---GAT-GAGTGT----GCGTG-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out381   --------------------------GTGAGT-GAACATG---C-GTACG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out382   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out383   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out384   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out385   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out386   ----------------TAGG---------GGT-GAGTGT----GCGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out387   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out388   ----G--C---------CTTCATATG----GG-TG-AGT----GCAGCGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out389   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out390   CATATGGGTGA------------GTG---TAC-GCACGT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out391   ------CGTGT--GTGCGTTTATAGG---GAT-GAGTGT----ATAT--G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out392   ---------TT--CTTAGGG---------AGT-GAGTGT----GCGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out393   ----------------------------------AGTGCA---C-GTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out394   -------------------------G---GGT-GACTGT----ATGTG-T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out395   GTTCATAG-GG------GTGAGTGTG------------------CGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out396   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out397   -------------------------G---TGT-ATG----TGCGTGTTGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out398   ---CATAG-----------------G---GGT-GAGTGT----GCGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out399   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out400   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out401   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out402   TGCGT--TCA------TAAGGGTGAG---TGT-ATG-CG-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out403   -----T----------TAGGGAAGA-----GT-GTATGC----GCGTGTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out404   GTTTATAG-----------------T---GGT-GAGTGC----GTGCCTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out405   ----------------------------------ATCG------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out406   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out407   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out408   ----TGTGCGT--TCATAGGGGTGAG---TGT-ACGTGCGTGT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out409   ------GGTAG---GATGTGCGTATA---CAA-ATGTATGTGTGTGTTTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out410   -----A----------TAGGGGTGA-----GT-GTACGC----ACGTGC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out411   -----GAGAGA--GGGTTTGTGTACGT----------GC----AT-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out412   -----------------GTTCTTATG---AAC-GAGTGT----ACGTGC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out413   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out414   TGCGTTCATAA------GGGTGAGTG---TAC-GTGCGT----GT-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out415   ---------TC--ATGGGTGATTACG---TGT-GACGAC----TA-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out416   ----CGTGCGT--ATTGATGAGGGT--------------------ACGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out417   ------GCGTT---CATAGGGGTGAG---TGT-ACA------TACTTGGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out418   -------------------------G---GGT-GAGTGT----ACGCG-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out419   ------TGTGT--GTGTTCGT-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out420   -----A----------CAGGGGTGA-----GT-GTACAT----GTGTGTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out421   ----G--T-GC--AT-----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out422   ------------------------------------TGT----ACATGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out423   -----------------------------GAT-GAGTGT----TTGC-AT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out424   TTGTGAGT----------GTCTGCGT---CTG-TA---------CTGTGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out425   -----A----------TAGGAATGA-----GT-GTGCGT----GCGTATT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out426   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out427   CATAGGGGTGA------------GTG---TAC-GTACGT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out428   -----------------GTTCGTAGG---GAT-GAGTGT----ACGCG-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out429   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out430   GTACATAT-----------------G---GGT-CAGTCT----GCGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out431   GTCTGCGT----------CTGTACTG---TGT-TT---------CATA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out432   --------------------------ACAGAC-GATTATA---G-GTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out433   ----A--T-GC--ATACGTTTATAAG----GA-TG-AGT----GT--ACG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out434   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out435   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out436   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out437   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out438   --------------------------------------T----GTGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out439   -----G------------GTTGAGT-----GT-TTGCGC----TTGTGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out440   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out441   ---------------------------------GAGTGT----ATGCG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out442   ---CG-----T--TCTGATGTTTG-----------------CGTATTTGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out443   ----------------CCTTCATAAG---GAT-GAGTGT----TCGCG-T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out444   GTTCATAG-----------------G---GGT-GAGTGT----GTGTCGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out445   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out446   TGCATTCA--------------TAGG---GAT-GAGTGT----ACGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out447   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out448   -----G----------GTTGAATGT-----GC-G------------TACG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out449   --------------------TGATTG---TTC-ACG------------TG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out450   GTTCATAG-GG------GTGAATGTA---CGT-GCGCGT----GTG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out451   --------------------AGTGCA---T---------------GTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out452   T----ATGTGC--GTTCA----TA-------G-GAT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out453   TGCGTTCA--------------CAGG---GGT-GAGTGT----ACGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out454   CGTAGAGATGA------------GCG---TAC-GTGCGT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out455   ------------------------------GG-TGAGCG----TAAC-GC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out456   ------------------GG---------GGT-GGGTGT----ACGC-GC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out457   ----------------CATATATAG----GTT-GAGTGT----AT-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out458   -----------------GTTCATAGG---GAT-GAGTGT----ATGCG-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out459   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out460   -----GTGTGT--TCATAGG---------GGT-GAGTGT----ACGC-GC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out461   -----A----------TAGGGGTGA-----GT-GTACGC----GCGTGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out462   ----TATGCAT--TTATAGGGGTGAG---TGT-ACGTGTG----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out463   GTTCATAG----------GGAT-GAG---TGC-ACG--------CGCGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out464   --------------------------------------------CAC-GC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out465   ---------------------------------G----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out466   GTCCATAA-----------------G---GTT-GAGTGT----GCGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out467   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out468   ----TGTGCGT--TCATAGGGGTGAG---TGT-TTGCGCGTGT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out469   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out470   -----A----------TAAAAATGG-----GT-ATACCC----GCACTTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out471   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out472   --TGTGCGTGT--GTGCGTTCATAGG---GGT-GAGTGT----ATGCG-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out473   GAG--------------------GGT---GCT-CATAGG----GGTAGG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out474   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out475   ----TTTGCAT--TCATAGAAATGAG---TAT-GCATGCATG--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out476   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out477   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out478   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out479   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out480   ----G--T-GT--GC--GTGTA-------------------------TGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out481   ----CGTGCAT--TCATAAGAGTGAG---TGG-TCGTGT--TG------T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out482   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out483   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out484   -----------------GTTCATAGC---AGT-GAGTGT----ACG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out485   AAATGAGATAC------------------------CTGT----GTACGG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out486   -----------------TTTCATAAG---GGT-GAGTGT----ATGCG-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out487   ---------------------------------------------ACGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out488   ----TGTGCGT--TCGTAGGGATGAG---TGT-ATGCGCGTGT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out489   -----TGATAT--GTGTGGGTG---------T------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out490   ATATGTTC--------------ATAG---GTG-TGATGT----GAGTGAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out491   CGTAAGGGTGA------------ATG---TAC-GCGCGT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out492   -----G----------GGTG---AG-----TG-T---------ACGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out493   TTAGTTTACGT--GCATATTTG---------T-GAG--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out494   ATATGAG-------------TGAGTG---TAC-GCGCGT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out495   CATAGGGGTGA------------GTG---TAC-GCGCGT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out496   TTTTCATAGGG--GTGACCGGGTGAG---TGT-GCG----TTTGTATTTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out497   -----------------GTTCATAAG---GAT-GAGTGT----ATGCG-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out498   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out499   -----------------GTTCATAGG---GGT-GAGTGT----ACGCA-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out500   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out501   ------AGCGT---------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out502   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out503   -----A----------CAGGGGTGA-----GT-G----T----GGGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out504   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out505   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out506   ----TGTACCT--TCATAAGGTTGAG---TGT-ATGTGCGTGT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out507   CGTAA--GTGA------------GTG---TAC-ACACGT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out508   ----TGTGTCT--TCGTAGGGGTGAGT------GCATGC----ACGT---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out509   ------TGCGT--TTATATGGGTGAG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out510   ---------------------TAGTG---TAT-GCG-CG-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out511   -----TTGTCA--ATCTGAAACTC--------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out512   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out513   GGCGTTCA--------------TAAG---GGT-GAGTAT----ATGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out514   -----------------CAAGGG--------T-GATTGT----AC-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out515   ------------------------GG---GGT-GAATGT----ACGCG-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out516   --------------------------AAGGGT-GAGTGTA---C-GTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out517   ------TTATT--AAGGTGAA---------------TGT----------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out518   -----A----------TAAGGATGA-----GT-GTGTGT----GCGTATT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out519   --------------TGCGTTCATAGA---GAT-GAATGT----TCACGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out520   ----GTGTAGT--TTGCATGTGTGCAT----------AG----GTGTGAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out521   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out522   -----G----------AT-----GA-----GT-G----T----TAGTGGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out523   ---TC--ACA------GGGGTGAGTG---TAC-ACA--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out524   -----A----------TAGGGTTGA-----GT-GTATGC----GCGTGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out525   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out526   -----ATGTGT--TCATAGGGAT-GG---TGT-ACATG--CTT------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out527   ----TGTGCGT--TCATAAGGGTGAG---TGT-ACGTGCGTGT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out528   GTTCATTA----------GGGTGAAT---GTG-TA---------CGTGTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out529   ----TGTGCGT--TCATAGGGGTAGG---TGT-ATGCGCGTGT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out530   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out531   -----------------------GG-----GG-TGATGT----GCGTGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out532   -----TCATAG----------------------GAATGG----ACATACG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out533   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out534   -CATA------------AGGTGAGTG---TTC-ACG------------CG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out535   -----A-----------TGGATGAG-----TG-TTCACG----CGTGTT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out536   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out537   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out538   ----------------------------------------------CGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out539   ----TGTACGT--TCATATGGGG-------------TGTGTGTGCCCGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out540   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out541   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out542   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out543   TTGCGTTCTAC--GT-----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out544   ----------------------------------GGTGT----ACGTTCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out545   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out546   -----------------CTTCATAGG---GGT-GAGTGT----TCGCG-T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out547   --GTTCACATT--TCATACGTGTGAG---TGT-GCA----CGTGTATTTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out548   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out549   GTTCATAG-GG------GTGAGTGTA---C---------------GTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out550   ----TGTGCAT--TCATAATTAAGAG---TTA-GCGCACGCGT------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out551   ---------TC--ATAAAGGATGAGT---GTG-CGTGTG----TGTTTGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out552   ---------------------GTGAG---CGT-GCG----TGCATTTTGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out553   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out554   -----T----------TAGGGGAGA-----GT-GTACGC----GCGT---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out555   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out556   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out557   GCGTACTC----------GTGAGCGT---CTG-CA---------TCTGGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out558   -----A----------TAGGAGTGA-----GT-G----T----ACGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out559   -------------------------------------------TGTA-CC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out560   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out561   TTATGAGC----------GTCTACGT---CTG-TG---------TTTCCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out562   -----G----------GGTGAGTGT-----GC-G----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out563   ------TGAGT--GTATGCGCGTGTAT--G------AGC----------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out564   --------CTC--ATAGTGGTG----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out565   -----A----------AAGGGGTGA-----GT-GTACGT----GCGTGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out566   ----------T--GTACGTTCATAAG---GGT-AAGTGT----ACGCG-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out567   --------GTT---CATACCGGTGAG---TGT-ACGTAAGTGTGTGTGAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out568   CGTGTGTACGT--TCATAACGGTGAG---TGT-CCG----TGCGTGTTTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out569   ---------------------------------GAGTGT----ACGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out570   ----CACGCGT--TCTTAGG---------------GTGAGTGTACGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out571   ----------------------------------TGTACG---T-GTAAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out572   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out573   -----G----------GGT----GA-----GT-G----T----GCGTGAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out574   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out575   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out576   -----------------TTCGTAGGG---GTT-GTCTGT----ACGTTT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out577   -----T----------TAAGGATGA-----GT-G----T----GCGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out578   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out579   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out580   -----T----------TAGGGGTGA-----GT-GTGCGT----GCGTGTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out581   -----------------ATTCATAAG---AGT-GTTTGT----GA-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out582   ----CGTGGGT--TCATAGAGGTGAG---TGT-GTGTGTGCGT------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out583   GTGCGCGCGCG--TTCATAGGATGAG---TGT-A-C----GGGCGTGTTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out584   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out585   ----TGTGCGT--TCATAGGGTTGAG---TGT-ACGCGCGTAT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out586   ----G--T-TT--TTGTAGGAGTGAGT--TTA-CGTGTG----TGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out587   -----A----------GATGAGTTT-----AC-G------------TGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out588   -----A----------TAGGGATGA-----GT-ATATGC----GCGTGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out589   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out590   -----------------ATTCATGGG---GGT-AAGTGT----ATGCG-T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out591   -----------------ATTCATAGG---GAT-GAGTGT----ACGCC-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out592   ----------C--AGGCCTTCAT---AAACGA-GTGT------ATGGACG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out593   -----TGA------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out594   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out595   -----A----------TAGGGGTGA-----GT-GTGCGT----GCGTACT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out596   ATAGGGGTGAG------TG----------TAT-GAAC-A-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out597   GTTCATAG-GG------GTGAGTGTG------------------CGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out598   ATACTTGT-----------------G---AGC-GGCTGG----ATGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out599   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out600   -----A------------CCTGTGA-----GT-GTACGC----GCGTGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out601   TGTCTAGGGGTGTGAGTGTACGTATG---T--------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out602   GTGTTTAT-----------------G---AGC-ATCTGC----ATCTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out603   -----A----------TAGGGGTGA-----GT-G----T----GTCTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out604   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out605   --------------TGCGTTCATAGG---AAG-GAATGT----TCACGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out606   --------------------TGAGTG---ATT-ACG------------TG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out607   -----------------GTTCGTAAG---GGT-GAGTGT----ACACG-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out608   AGGATTCATGG--GTGAGTATG---------T-AC---------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out609   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out610   -----G----------AA----TGA-----GT-G----T----GCGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out611   -----------------ATTCATATG---AGT-GAGTGT----ATGCA-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out612   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out613   -ATAGGGGTGA------------GTG---TAC-GCACAT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out614   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out615   -------------------------G---TGT-GTGCGCGTGT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out616   ----CGTGCGT--TCATAGGG--------------GTGAGTGTACGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out617   -----------------AGA---------GGT-GAGTGT----AAGC-GC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out618   ----GTAACGT--TTATAGGAGTGTGC------GTACAC----GTGG---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out619   -----T-ATAT--GTAGGTGTGTG-------T------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out620   -----------------GTTCATAGG---GGT-GAGTGT----ACACA-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out621   -----A----------TAGGGGTGA-----GT-GTATGC----GCGTGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out622   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out623   GTGCGTGCATT--TATAAAGGATGAG---TGT-ATG----TGCGTATTTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out624   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out625   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out626   -----------------------------------GTGT----GTGCGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out627   --------------------------ATGAAT-ATCTGTG---C--ATAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out628   --------------------------ATGGGT-GCGTGTT---G-GTGAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out629   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out630   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out631   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out632   -----G----------GG----TGA-----AT-G----T----AC--GTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out633   ----GGTGCGT--CCAAAGGGGTGAG---TGT-GCGTGC--AT------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out634   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out635   --------------------------AGGTGT-GAGTGCA---C----G-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out636   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out637   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out638   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out639   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out640   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out641   -----------------GTTCATAGG---GGT-GAGTGT----ACGCG-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out642   -----------------ATTCATAGG---GGT-GAGTGT----ACTCG-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out643   ----------------------TATT---GGT-GAGCGT----ATGCAC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out644   ------------------------------GC-GAGTGT----ACGTGAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out645   -----G----------TGTGAGTGC-----AT-G----T----GCATGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out646   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out647   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out648   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out649   ------TGAG----TTCACGGAGACG---AGT-ATACGTGTGTGTGTGAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out650   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out651   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out652   CATAGGGATGA------------GTG---TTC-GCGTTT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out653   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out654   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out655   -----A----------GAT----CA-----GT-G----T----ACGTTCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out656   ----TGTGCGT--TCATAGGGATGAA---TGT-ACGCGCGTAT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out657   ----CGTATAT--TCATAGAAGTG--------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out658   --------------CATAGGAGCGAG---TGC-ATA----CGCGTGTTGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out659   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out660   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out661   -----------------TT-------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out662   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out663   --------------------------------------A----GTATGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out664   ------TGCGT---------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out665   ----GTGT-GT--GCGTCTTCACATG---AGT-GAATGT----AAGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out666   CGCGTTCATAG------TTGTAAGTG---CAC-GCGCGT----GT-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out667   ---GCATGCGT--TCATATGGGTGAA---TGC-ACG----TGCACGTTGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out668   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out669   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out670   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out671   -CATA------------GAGTCAGTG---TTC-ACG------------CA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out672   ----------T--GTGTGTTCATACA---GGT-GAGTGT----ACGCG-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out673   ------TCTAG--GG------GTGAG------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out674   -----G----------GGT--GAGT-----GT-A----C----ACGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out675   -----------------G--------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out676   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out677   ---------AG------------GTG---TGC-GCGCGT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out678   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out679   ---------------ATAGA---------TGT---GAGT----GTAC-GC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out680   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out681   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out682   -----------------GTTCATAGG---GGT-GAGTGT----ATGCG-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out683   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out684   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out685   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out686   -----T----------TAGGGGTCA-----GT-A----T----GTATGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out687   ------TGCGT---------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out688   -----------------GTTCATAGG---GAT-GAGCGT----CTGCG-T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out689   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out690   --CTTTCATG---------------------T-GGGTGA----GTGTAAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out691   ------------------------TG---AGT-CTACGT----GCGCGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out692   ------------------AGT--------------GAGTGTACGTGCGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out693   ----CGTGCGT--TCATAGGGATGAG---TGT-ACGTGCATGT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out694   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out695   ----CGTGCGT--TCATA------------------GGTGTGAGTGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out696   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out697   GCCTGCGTGCT--TAATAAGGGTGAG---TGT-TCG----TGCGTCTTTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out698   GTTCATAG----------GGGTGAGT---GGC-ATG--------CGTGCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out699   GTTCATAG-GT------CTGAGTTTA------------------CGTAGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out700   ----A--C-AT--TTATACGGATG------AC-TGCGCA----CACGTAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out701   ATAGGGG-------------TGAGTG---TAT-GCGCGT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out702   TGCATTTA--------------TAGG---GGT-GAGTGT----GCGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out703   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out704   -------------------------G---GGT-GAGTGT----GTGTG-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out705   -----TTGTCA--ATCTCAAGATCA------T-GGC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out706   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out707   -----A----------TAGGAGTGA-----GT-TTATGT----GTGTGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out708   -----------------GTTCATAGG---GAT-GAGTAT----ATGCA-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out709   TACGTTGG--------------GATG---AGT-GTGATT----ACGTGTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out710   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out711   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out712   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out713   -----A----------TAGGGGTGA-----GT-GTGCGT----GCGTCCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out714   ----TGTGCGT--TCATAAGGGTGAG---TAT-ATGCGCGTGT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out715   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out716   G------GTGA------------GTG---TAC-GCGCGC-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out717   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out718   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out719   ----CATACAT--TCACAAGGGTGAG---TGT-CCATGCGTGTATG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out720   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out721   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out722   CGAGTATACTT--CCATGTTTG---------T-GAG--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out723   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out724   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out725   GTTCATAAAGG------GTGAGTGTG------------------CGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out726   GTTCATAG---------------------GGT-GAGTGT----GCCTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out727   ---------------------------------GAGTGT----ACGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out728   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out729   ------GTGCT--CATAGGG---------ATA-GAGTGT----GTGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out730   -----G----------GGT----AA-----GT-G----T----A-TCGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out731   ATTCATAG-----------------G---AGT-GAGTGT----ATGTGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out732   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out733   ----------------------------------T---------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out734   GTTCATAG-GG------GTGACTGGG---TGA-GTGTAC----GTGCGTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out735   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out736   --------------------------GTGCCT-GTATTCA---T-AGGGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out737   ------GAGTG--TTCATAGGGTGAGT------GTTCGT----GCAC---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out738   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out739   G-------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out740   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out741   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out742   -----------------ATGTGTGCA---CAT-GTGCGT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out743   -----A----------TAGGGGTGA-----GT-GTACGC----GCGTGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out744   CATAAGGACGAGCGTAGCTTCTGCG-------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out745   -------------------------------------------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out746   -----C-GAGC--G-----------------T-ACG--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out747   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out748   ----TGTACAT--TCATAAGGATGAG---TGC-TCGCGCAT---------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out749   ----------------G----GTGA-----GT-G----------TACGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out750   -----G----------AGTGAGTGT-----AT--------------GTGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out751   -----G----------TAGGAATGA-----GT-GTACGC----GCGTGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out752   -----TAG-GG------ACGAGT----------------------GTACG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out753   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out754   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out755   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out756   GTTCTTAG-----------------G---GGT-GAGAGT----GCGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out757   ------------------TTCATAGG---GGT-GAATGT----ACGCG-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out758   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out759   -----------------GTTCATAGG---GGT-GAGTGT----ACGCA-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out760   -----------------TCTTTCGGA---GGT-GCTCAT----AGGGG-T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out761   -----------------GTCTGTAC-----TC-TATTTT----AAAAAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out762   CTTGCGTGCGT--GCATTAGTGTCAG---TAT-GTG----TGCGTGCTTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out763   -----------------ACATTAGGG---TTA-GTG--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out764   -TGCG------------GAAAGGGTG---TGC-GTG------------CG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out765   ----TGTGCGT--TCATAAGGGTGAG---TGT-ACGCGCGTGT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out766   ATAGGGA-------------CGAGTG---TAC-GCGCGT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out767   ---------AT--TG--GGA-----------T-GGG--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out768   GTTCATAG-GG------GTGAGTGTG---CG-----------------TG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out769   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out770   GTAC----------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out771   AGGAG---------------TGAGTG---TAA-GCGCGT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out772   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out773   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out774   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out775   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out776   TTATGAGC------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out777   ------CGTTC--ATAGGGGTG----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out778   -----G----------TA--GGGGT-----GA-GTGTGT----GCGTACT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out779   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out780   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out781   ----TGTGCGT--GGGGAGTGTATGC---TCA-T----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out782   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out783   --------------------------AGGGAC-GTACATA---CGTATGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out784   TATAGGTATGG------------GTG---TAT-ACGCAT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out785   -----------------GTTCATAGA---GAT-GAGTGT----GCGTGC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out786   CACAACGAGAA------------GTG---TAC-GCGTCG-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out787   -----A----------TATGGATGA-----GT-GTACGT----GCATGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out788   ---------------------------------GAATGT----GTGCGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out789   -----TAGATC--GGTCACGTGTGCGC----------GC----GTGTTTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out790   GGAGCGAGTGCAGACGCGTTGTGAG-------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out791   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out792   -----TGTTAT--AA--GGG-----------T-GAG--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out793   GTTCATAG-GG------GTGAGTG--------------------TGTGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out794   -----A----------TAGGGGTGA-----GT-GTGCGT----GCATACC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out795   TTCATGGGTGA------------GTG---TAC-GCGTGT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out796   -----GGTG-----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out797   ---GTGCGCGT--TCGAAGAGGCGAG---TGT-ACG----TGCGTATTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out798   GTTCATAG-GG------TGAGTGTAA---C---------------GTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out799   ------GCGTA--TGTTCATGTTGAG---TGA-GCA----TGTGTGTTTC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out800   -----------------GTTCATAGG---GGC-GAGTGT----ACGTG-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out801   ----GCTT-GT--GTGCATTTACATG---TGT-GAGTGT----TGGCG-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out802   ----------T--TTTTAGGGGAGAG---TGT-ACG----CGTGTGTTGC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out803   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out804   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out805   TGGAT-------------------------TG-CATGCG-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out806   ----TGTGCGT--TCATAGGGGTGAG---TGT-ATGCACGTGT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out807   -----------------GTTCATAGG---GGT-GAGTGT----ACGCG-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out808   CATGTGGGTGA------------GTG---TAC-GCGCGT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out809   ----TGTATTT--TCATAAGGGTGAG---TAC-AAGCGCGTGT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out810   -----------------GTTCATAGG---GTT-GAGTGT----ACGCA-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out811   ------TGC-----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out812   ----GTTGCGT--TCATAGGATTGAG---TGT-ACACGAGTGTTGT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out813   -----G----------GATGAGTA--------------T----GCGTGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out814   ----------------------CA-------T-GTT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out815   -----T-GTG----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out816   -----GGATGT--GCGGCTGCATTCG---TAG-GGT----TGAGTGTTTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out817   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out818   ------TGTGA--GT-----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out819   ----GGAT-GC--GCATAT-------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out820   ----CG----T--TCATAGGGATGAG---TGT-GTGTGCGTGG-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out821   -------------------------------C-GCATGT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out822   -----------------------------GGT-GAGTGT----ACGCA-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out823   AGGG-------------GTGAGTGT------------------GCGTCCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out824   GTTCATAG-GG------ATGAGTGTA---CGT-----------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out825   -----T-GAGT--AT--A---------------TAT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out826   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out827   -----------------GTTCATAGG---GGT-GAGTGT----ACGCA-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out828   GTTCATAG----------GCGTGATT---GTA-CG---------TGCGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out829   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out830   -----A----------TAGGTGTGA-----GT-G----T----GCGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out831   ----TGTGCGT--TCATAGGGATGAG---TGT-CCGCGCGTGT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out832   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out833   -----A----------TAGGGATAA-----GT-GTGCGT----GCATATT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out834   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out835   ------------------GGGGTGA-----TT-GTACGT----GCGTGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out836   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out837   -----A----------TAGGGGTGC-----GT-GTGCTC----GCGTTTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out838   ----------------------------------AGTGT----ATGC-GC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out839   CATAGGGGTGAGTGT-----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out840   -----A----------TAGTGGTGA-----GT-GTGCGT----GCGTACT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out841   -----T----------TAGGGGTGA-----GT-GTACGC----GCGTTT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out842   GTTCTTAG-GG------GTGAGTGTA---T---------------GTGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out843   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out844   --------------------------------------------CGC-GC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out845   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out846   -----GCGTGT--GTGCGTTCGTAGG---GGT-GAGTGT----TCACGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out847   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out848   -----------------GTTCATAGG---GGT-GAGTGT----ACGCG-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out849   GTTCATAG-AG------GTGAGTGTG------------------CGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out850   -----T-GTGT--GT-----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out851   ----CGTTCAT--ACGGCG-----AG---TGT-GCGTGC--GT------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out852   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out853   ----TGTGCGT--TCATAGGGATGAG---TCT-ACGTGC-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out854   ----CGTGTGT--TCATAGGGATAAG---TGT-ACGTGC--GT------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out855   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out856   -----A----------AAA-AAA------------------------A--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out857   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out858   ----TGTCCGT--TCATAGAGGTGAG---TGT-ACGTACATGT------T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out859   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out860   ----------------TATG---------GGT-GAGTGT----ACGCGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out861   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out862   ----TGTGTGC--TCATAGGGGTGAG---TGT-GCGTGC-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out863   -------------------------------T-ACG----CGCATGTTGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out864   ----------T--TTATAGG---------AAT-AAGTGT----CCGC-GC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out865   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out866   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out867   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out868   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out869   ----GTAC-GC--GCGTAT-------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out870   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out871   GCTCATAG-GG------ATGAGTGTA---C---------------GTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out872   ---------------------------------GTGTGC----GCGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out873   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out874   ------GTACT--CATAGGTG---------------TAG----------T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out875   GTTCACAA----------GGAT-GAG---TGT-ACG--------TAAGTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out876   GTTCATAG-AG------CGAGTGT---------------------GCGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out877   GTTTATAG-GT------GTGAGTGTG------------------CGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out878   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out879   T----GCATGC--CATTG----TG-------A-GT---------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out880   ---------------------------------GAACGT----GCATGC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out881   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out882   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out883   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out884   ----TGTGCGT--TCACAGGGCG-----------------AGTGTATGCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out885   ----TGTGCGT--TCACAGGGCG-----------------AGTGTATGCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out886   TTAGGATGTGC--CTACA--------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out887   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out888   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out889   CGCGTTCA--------------TAGG---GAT-GAGTGT----ACATGCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out890   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out891   ----CGTGCGT--TCATAGAG--------------GTGAGGATACGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out892   --------------------------------------T----GTGCGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out893   ------TCCGT--TCAT---------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out894   -------------------------------------------ACGC-GC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out895   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out896   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out897   -----G----------GGTGAGTGT-----AC-G------------TGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out898   -AATG------------GA-TGAGTG---TTC-ACG------------CG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out899   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out900   --------------------------AGAGGT-GAGTGCA---C-ATTGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out901   -----G----------AAT----AA-----GT-G----T----GCGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out902   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out903   ------ATCCG--T--TCATACGGGG---AGT-GTA----TGCGCATGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out904   ----------A------------GTG---TAC-GCGCGT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out905   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out906   -----A----------TAGGGATGA-----GT-GTATGC----ATG-TG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out907   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out908   ------AGGGT--GAGCATGTGTTCTTGGGTG-TGACTT----GTGAGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out909   ---------------ATAGGGTAGGA---TGT-ACG----CGCGTGTTGA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out910   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out911   T----ACATGC--GTGTT----CG-------T-GAC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out912   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out913   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out914   -----------------GTTCATAGG---GGT-GAGTGA----GCACG-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out915   -----A----------TAGGGGTGA-----GT-GTATGC----GCG-TG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out916   GTTTATAT-----------------G---GAT-GAGTGT----GCATGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out917   ------------------------------GT-GAGTGT----ACGTGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out918   --------------------------AAAGGT-GAGTATA---C-ACACG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out919   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out920   ATAAGCGC-----------------G---AGT-GCGTAT----TATTGAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out921   -------G-GG--GTACTTTATAAAA---GGT-GAGTGT----ATCAGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out922   ---------GT--TTATAGGGACGAG---TGT-ATGCACGTGT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out923   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out924   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out925   -----A----------TAGAGGTGA-----GT-GTGCGT----GCGTCT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out926   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out927   GTTCATAT-----------AGGTGAG---T---GTGTGT----GCGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out928   -------------TCGTAGG---------GAC-GAGTGT----GCGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out929   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out930   GTTCATAG-GG------ATGAGTATA---C---------------GTGCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out931   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out932   ----TGTGCTT--TCATAGAGGTGAG---TGG-GTGAGTATATGCACGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out933   ------------------------------------TGT----ACTTGCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out934   TGCGTTCATAA------GAGTGAGTG---TAC-GCACGT----AT-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out935   ----TGTACGT--TCATAGGAACGAG---TGT-ACGCGTCTGT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out936   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out937   ----TGTGCGT--CCATAGGGGTGAG---TGT-ACACGCGTGT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out938   -----T-GCAT--GTGTGTTTGTG-------T-GCG--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out939   -----A----------TAGGATGAA-----CG-TTCACG----ATTGTT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out940   GTGCATGT----------GTTCATAG---GGA-TA---------AGTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out941   ------TG------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out942   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out943   ------------------------------GA-GTGTGC----GCGTGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out944   --------------------------------------------TGCGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out945   ----TGTGCGT--TCATAAGAGTGAG---TGT-ACGTGCGTGT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out946   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out947   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out948   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out949   ----CGTTCAT--AAGAACGAGT-------TT-ACGTACATGT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out950   CATAAGGATGA------------GTG---TAC-GCACGT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out951   ----G--C-GT--ATATAGTGATGATG--GGT-GTACGT----GTGTAAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out952   -----------------GTTCATATG---GGT-GAGTGT----ACACG-T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out953   CGCGCGTTCATAGGTGTGAGTGTAC-------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out954   ----CGTGCAT--TCATAAGGGCAAA---TGT-ACGTGC--GT------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out955   --------------------------AGAGGT-GAGTGCA---C-GCTCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out956   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out957   -----AGGTGT--AC--CTA-----------T-GTG--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out958   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out959   GGATGTATGCG--TTCATAGGAGGTG---AGT-G-T----ATGCGTGTTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out960   -----T----------CAGGGGTG--------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out961   ----CGTACAT--TTATAGGGGTGAG---TTT-GCATGTT----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out962   ----G--C---------GTTTATAGG----AT-TG-AGT----ATATGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out963   GTTCATAG-GG------ATGAGTGTA------------------TGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out964   ------------------GGGGTGA-----GT-GTACGC----ACGTGC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out965   ----CGTGCGT--TCACAGGG--------------GTGAGTGTACGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out966   ------TGCGT--TCAAGGGG---------------TGA----------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out967   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out968   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out969   -----A----------TAGGGGTGA-----GT-ATACGT----GCGTGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out970   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out971   AGAAG---------------TAAGTG---TAC-GCATGT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out972   -----GTGCAT--TCATTTG---------GGT-GACTGT----ATGCGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out973   ---------------------------------------------GC-GC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out974   CGTGTGTACGTTCATAGGGATGAGTG---TAC-GCGCGT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out975   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out976   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out977   --------------------------TAGGAT-GAATGTG---C-ATACG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out978   ----TGTGCGT--TCATAGAGGTGAG---TGT-ACATGCGTGTGTGTGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out979   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out980   GTTCATAG-GG------ATGAGTGTT---TGT-GCGCGT----G------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out981   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out982   -----------------------TGT---ATT-GTATTT----CTTAAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out983   ----------------------------------------------C-GC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out984   --------------TG--------------------------------AG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out985   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out986   GTTCACAG-GG------GTGAGTGTG------------------CGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out987   -----A----------TAGGGATGT-----GT-GT---------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out988   -----------------ATTCATAAG---AGT-GAGTGT----ACGCA-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out989   -----T----------AGGGGTAGA-----AT-G----T----GCGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out990   ----G--C---------ATTCATAGA----GA-TAAATG----CACGCAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out991   --------------------------AGGGGT-AAGTGTA---C-GTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out992   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out993   GTTCACAG----------GGGTGAGT---GTG-CG---------TGCGTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out994   GTTCATAG-GG------ATGAG--------------TGT----GTGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out995   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out996   GAGTGAGT-----------------------------GT----GTGTTTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out997   -------------------------A---GGG-GTG----AGTATGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out998   -----------------GTTCATAAG---GAT-GAGTGT----TCACA-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out999   -----A----------TAGGGATGA-----AT-GTGCGT----GCGTACT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1000  -----------------ATTCATAGG---GGT-GAGTGT----ACGCG-T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1001  ------CGCGC--GCGTTCGTA----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1002  ---------------------GTGAG---CAT-GCA----TGCATGTAGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1003  ---GCGTGCGT--TCATTGGGGTGAG---TGT-GCG----TCCCTGTTTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1004  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1005  ----TGCGCGT--TCATAGGGGT--------------GAGTGTTCATGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1006  ----TGTGCGT--TCATAGGGGTGAG---TGT-GCGTGGGTGTGAACGTC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1007  -------------------G---------GGC-GAGGTC----ACGC-GC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1008  ----------------------------------AGTGT----GCGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1009  ----------------------------------T---------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1010  ----------------------AGTG---TAT-GGG-CG-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1011  -----G----------CAC-GCA------------------------CGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1012  --------------------------AGACGT-GGTTGTG---C-GTGGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1013  -----T----------GGCG----A-----GG-G----T----ACGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1014  ----GCGT-TC--TTGCGTTCGTAGG---GGT-GAGTGT----GCGT--G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1015  --GTGTGTGCG--TTCATAGCGTGAG---TGT-ACA----CGTGAGTTTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1016  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1017  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1018  GGTGCACGTAG--CGACAG-GGTGTG---CAT-GCATGC----ATTTAT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1019  ATAGGGGTAGG------GTGCGTGTT---TAC-ACGCGT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1020  -----A----------TAAGGGTGA-----GT-GTATGC----GCGTGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1021  -----AATGGC--AC--GTG-----------T-GTG--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1022  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1023  ----------------TAGG---------GGT-GAGTGT----ACGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1024  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1025  ------T-------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1026  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1027  -------GTGC--TTATAGGGGTGAG---TGT-ACG----TGCGTGTTGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1028  --------------------------TCATAA-TGGTGAG---A-GTGCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1029  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1030  -----A----------TAGGG-TGA-----GT-GTGCAC----GCATGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1031  TTTCAAAA----------GGGTGAGT---GT--AGG--------TGCGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1032  CTTCATAGAAT------GAGTGT--------------------GCGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1033  ----------T--TCATAGG---------GAT-GAGTGT----ATGC-GC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1034  CATAGG--------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1035  -----------------GTTCATAGG---GAT-GAGTAT----ACGTG-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1036  -----T-GTG----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1037  ----CGTGCGT--GCGTCGTCGTAGG---GTT-GAGTGTACGTGCACGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1038  GTTCATGG----------GGTGAGTG---TGC-GT---------GCGTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1039  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1040  -----G----------GAT----GA-----GT-G----T----GCGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1041  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1042  -----A----------TAGGATGGA-----GT-GTGCGT----GCGTGTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1043  ----CA----------------TGGG---TGA-GTGTACGTGT------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1044  -----------------GTTCATAGG---GAT-GAGTGT----ACGCG-T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1045  --------------TGCGTTCATAGG---GGT-GAGTGT----TCACGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1046  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1047  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1048  ------ACGT----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1049  -----------------------------------GTGT----ATAC-AC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1050  -----------------------------------ACAC----GTGT---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1051  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1052  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1053  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1054  TATGCGC-------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1055  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1056  CATAGGGGTGA------------GTG---TAC-GTGCAT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1057  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1058  -----A----------TGAGGGTGA-----GT-T----T----TCGTACA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1059  ------CTAAT--AG--GAG-----------T-GAT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1060  GGTAGGTGCGT--ATGTGTGTATCATAAGTGT-GAATTTA---C-GAGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1061  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1062  GTTT----------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1063  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1064  GTTCATAGGGA------T-GAATGTG---T---GCGCG------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1065  -----A----------TAG-------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1066  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1067  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1068  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1069  -----------------GTTCATAGA---GAT-GAGTGT----TCGCG-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1070  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1071  -----G----------GGTGAGTGT-----AC-GTG--C----ATATGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1072  CA------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1073  -----G----------ATGA---GT-----GT-A----C----GTCCGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1074  TGTAAGGTGAG------------A-G---TAC-GTACAT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1075  ---------------------------------ATG----CGTGTGTTGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1076  -----A----------TAGGGAAGA-----GT-GTGTGT----GCGTGCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1077  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1078  GTTCATAG-AG------GTGAGTATG------------------CATGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1079  -----T-GTGC--ATCTACG------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1080  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1081  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1082  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1083  TGAGTTCATAG------GAGTGAGTG---TAC-GACTGT----ACATGCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1084  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1085  ----------------------------------------------C-GC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1086  -------------------GGGTGAA---AGT-A-C----ACGCGTGTTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1087  --------------------------ATGTGC-GTGCATA---C-GTTCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1088  CGTGCGTACTC--TCATATGGGTGGG---TGT-ATG----TGCGCGTTAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1089  --------------------------AAAGGT-GAGTGTA----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1090  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1091  -------------TTATAGGGGTGAGTTGAGT-GTACATG--CATGT---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1092  -----A----------TAGGGATGA-----GT-GTACGC----ACGTGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1093  ------T-------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1094  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1095  -----A----------TAGGGGTGG-----GT-GAGTGT----GCGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1096  ------TAGGG--GTGAGCGTT----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1097  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1098  GTTCATAG-GG------GTGAGTGTG---C---GTGCGT----GCGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1099  -----A----------TAAGGGTGA-----GT-GTACGC----ACGTGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1100  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1101  GTTCATAA-GG------ATGAGTGTG---C---GTGTG------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1102  -----A----------TAGGGGTGA-----GT-GTACGC----ACGTGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1103  ----TGTGCGT--TCATAGGGGTGAG---TGT-ATGCATGTGT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1104  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1105  ----------T--TTATAAGGGTGAG---TGT-ATG----CACATGTTTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1106  -----------------AAG---------GCT-GAGTGT----GCGC-GC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1107  ---GTTTACGT--TCATAAGGGTCTG---TGT-ACG-----TGTTTCTTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1108  ----CGTGCGT--TCATATGGATGAG---TGT-GTGTGCGTGC-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1109  ------------------------GG---GAT-GAGTGT----ACGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1110  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1111  GCGTCTGC----------TTCTGTAC---T--------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1112  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1113  -----------------GTTCATAGG---GGT-GAATGT----ACGCG-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1114  -----------------GTTCATAGC---GAT-GAGTGT----ACGCG-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1115  ----TGTGCGT--TCATAGCGATGAG---TGT-ACGCGCTTGT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1116  ----TGTGCGT--TCATAT-------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1117  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1118  CATAGGGGTGA------------GTG---TAC-GTGCGT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1119  --------------------TGAGTG---TTC-ACG------------CG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1120  GTTCGTAG-----------------G---GGT-GAGTGT----GCGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1121  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1122  ----CGTGCGT--CA-TAGGGGTGAG---TGT-G----TGCGC-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1123  -----------------ATTCACAGG---GGT-GAGTTC----ACGCG-T
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1124  GTTCATAG-GG------GTGAGTGTA------------------CGTGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1125  ----CGTGTGT--TCATACAGACGAG---TGT-GCGTGC--GT------A
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1126  TACGTTCA--------------TAAA---TGT-GAGCGT----GCATGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1127  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1128  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1129  GTGCATTC----------ATATATAG---GGT-GAGTGT----GCATCGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1130  ----------------------------------TGCT------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1131  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1132  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1133  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1134  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1135  -----------------------------GGT-GACGTA----CCCG-TC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1136  -----A----------TAGGGCTGA-----GT-GTGCGA----GCGTGTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1137  --------------------CTTAGGGATGAA-TGG----------TGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1138  GTTCATAG-GC------GTGAGTGTG------------------CGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1139  AGTGCTCATAT--GG--GTAGGTTGT---GCG------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1140  ----TGTGAAT--TCATAGGGTTGAG---TGT-ATGCGCGTGT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1141  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1142  ----CATGCGT--TCATAGGG--------------GTGAGTGTACGTCCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1143  ----G--T-----GACCGTTCATATG----GG-TG-AGT----ATATGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1144  ---------------------------------GTG--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1145  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1146  CGTTC--GTG------CGTTCATAGG---ATT-GAG-TG-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1147  ----------T--GTGCGTTCATACG---GAT-GAGTAT----ACGCG-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1148  GTTTATAG-GG------GTGAGTGTG---CGT-----------------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1149  -----------------GTTCATAGG---GGT-GAGTGT----ATGCG-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1150  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1151  -----TTGTGT--AAGTGCATG---------T-GC---------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1152  -----A----------TAGGAGCGA-----GT-GTACGT----GCGGGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1153  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1154  TATGTTTATAA------GGATGAGTG---TGC-CCGCGT----GT-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1155  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1156  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1157  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1158  --------------------------------------------CGTTC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1159  -----G----------GATGAGTAT-----AT-G----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1160  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1161  -------------------G---------GGT-GAGCGT----GCGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1162  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1163  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1164  ATTCATAG-GG------GTGAGTCTA---C-----------------GTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1165  -----A----------TATGGGTGA-----GT-G----T----ACATACG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1166  GTTCATAG-GC------GTGAGTGTG---T---GTGCG------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1167  ---------------------------------GA---------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1168  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1169  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1170  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1171  ----------------------------------------------CAT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1172  -------------------TAATGA-----TT-ATACGC----AAATGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1173  ----TGTGCGT--TCATAAGGGTGAG---TGT-ACGCGCGTGT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1174  ------T-------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1175  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1176  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1177  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1178  -----------------GTTCGTAGG---GGT-GAGTGT----ACGCG-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1179  -----------------GTTTGTA--------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1180  -----A----------TAAGGATGA-----GT-GTACGC----ACGTGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1181  ----------------------------------AG--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1182  -----------------GTTCTTAGA---GGT-GAGTGT----ACGCG-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1183  ----CGTACGT--TCACAGGGGT-------------GAGTGTAACGTACG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1184  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1185  ----CGTTCAT------CTGAG--------------TGAGTGTACATGGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1186  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1187  CGTTC--ATA------GGGG-----------------TG-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1188  -----A----------TAAGGTGA------GT-GTACAT----GTGTGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1189  -----------------AGTGGTGAG---TAT-ACG----TGTGTGTTGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1190  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1191  ---GTGTGCGC--TCATAGATGTGAG---TGT-TCG----CGCGTGTTGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1192  -------GTGT--TCATAGG---------GAT-GAGTGT----GCGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1193  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1194  -----------------GTTAATAGG---GGT-GAGTGT----ACTCG-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1195  GTGCTTGT-----------------G---AGC-GTCTGC----GTCTG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1196  -----A----------TAAAAATGA-----GT-GTACAC----GCGCGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1197  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1198  -------GTGT--AC--TTA-----------T-GTA--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1199  AGTA-------------------------TAC-GCACGT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1200  GATGCTCATAG--GGGTAGGATAAGT---GTG-ATGTGT----GTT----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1201  -----------------------------------GTGT----GCGC-GT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1202  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1203  --T--T--------------CATAAA---AAT-GAGTGC----GTGCGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1204  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1205  ----TGTGCTT--TCATAAGGGTGAG---TGT-GGTGTGT----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1206  --------------------------------------------TTCAT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1207  ----TGTGCGT--TCATAGGGGTGAG---TGT-TCACGCGTGTT------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1208  ------TGTGT--TCATAGGGGTGAG---TGT-TCA----CGCGTGTTTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1209  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1210  TGCGTTCA--------------TATA---GAT-GGGTGT----AGG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1211  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1212  -----------------GTTCATAGG---GGT-GAGTGT----ATGCG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1213  AGATG--CTC------ATAGGGGTAG---GGT-GCG-CG-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1214  ------TTCTT--AGGGCTGAGTGTA---GGT-ACG----CGCGTGTTGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1215  ----------T--CCATGGGGGCGAG---TGT-ACA----TGCATGTTTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1216  ------------------------------GT-C----T----GCGTGCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1217  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1218  ----------------------TT-------A-CAA--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1219  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1220  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1221  -----------------GAGTGAGTG---TAT-GGGCGT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1222  -------------TTATAGAGATGA----------GTATG--CATGT---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1223  --------------TGCGTTCATAGG---GGT-GAGTGT----TCACGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1224  GTTCATAG-CG------GTGAGTGTG------------------TGGGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1225  -----T-GTGT--G------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1226  GTGCG-----------------TTCA---CAT-GGGTGA----GCGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1227  --------------------------TGGGTA-GGGTGTA---C-ATGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1228  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1229  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1230  GTGCGTGC-----------------G---TGT-TG---------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1231  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1232  ----TGTGCGT--TCATAGG---------GAT-GGGTGT----ATAT-GC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1233  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1234  ----G--T-GT--TCACAGAAGTGAT----TG-TT-----------CACG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1235  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1236  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1237  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1238  ----------------TAGGAGTGAA---CGT-ACA----TGCGTGTTTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1239  ----CGTGTGT--TCATCGGGGTGAG---TGT-GCGTGCGTAT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1240  -----------------AAGGGTGAG---TGT-ACG----CGTGTTTTGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1241  TGCGTTCATAA------GGGTGAGTG---TAT-GCGCGT----GT-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1242  -----------------GTCCATAGA---GGT-GAGTGT----ACGCA-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1243  GTTCATAG-GG------GTGAGTGTA---T---------------GTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1244  CATAGGGGTGA------------GTG---TAT-GCGCGT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1245  -----------------GCATGC-------GT-ATTTTT----GATTGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1246  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1247  GTCATAGG----------GATGAGCA------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1248  CCTTC--ATA------ATGTCGAGTG---TAT-GCG--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1249  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1250  ----CGTGTGT--TCATAGGGATGAG---TGT-GCGTGCGTAC-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1251  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1252  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1253  CATTC--ATA------AAAATCATTG---TAT-GCT-CG-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1254  CATTC--ATA------AAAATCATTG---TAT-GCT-CG-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1255  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1256  -----------------GTTCATAGG---GAT-GAGTGT----ACGGG-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1257  -------TGCG--TACAAAAGATGAA---TGT-A-A----GCGCGTGTTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1258  ---------GT--ACATAAG---------GGT-GAGTGT----ATGC-AC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1259  --------------TGCGTTCATAGG---GGT-GAGTGT----TCACTCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1260  -----------------GTCTGTACG---GTG-TTTCTT----AAAAAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1261  CATAGGGATGA------------GTG---TAC-GCTTGT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1262  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1263  -----G----------TGC----GC-----GT-G----T----GTGTGA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1264  ----CGTACAT--TTATAGGGGTGAG---TTT-GCATGTT----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1265  -------------------------------------GT----ACGT-GC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1266  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1267  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1268  GTTCATAG-GC------GTGAGTGTA---C---------------GTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1269  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1270  -----------------GTTCATAGG---GGT-GAATGT----ACGCG-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1271  GTTCATAG-----------------G---GAT-GAGAAT----GCGCGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1272  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1273  --------------TGTGTTTATA-AAAGGGG-ATGTATGTG------CG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1274  CGTTC--ATA------TGGATGAGTG---TAT-GAG-CG-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1275  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1276  -----------------GTTCATAGG---GGT-GAGTAT----ATGCA-C
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1277  ------TCATA---GGGTATGGTGAG---TGT-ACGTGTGTGTTTGTGAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1278  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1279  ----CGTGCGT--TCATAGGGATAAG---TGT-TGTGCGTGTT-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1280  GTCCGT-GCGT--TCGTATAGGTGAG---TGT-ACG----TGCATGTTTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1281  ----------------------------------GTGTG----CGTG-AG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1282  -----T--------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1283  GTTT----------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1284  ------TGCGT--TCATATAGGGGTGA-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1285  GTTCATTG-GG------GTGAGTGTG------------------GGTACG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1286  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1287  ----CGTGCGT--TCATAGGGATGAG---TGT-GTGTGCG----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1288  -----------------GGGTGAGGG---TAC-CCGCGT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1289  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1290  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1291  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1292  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1293  -----G----------TAC-GTG------------------------CAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1294  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1295  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1296  CGTAGGGATAA------------GTG---TAT-GCGCGT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1297  -----------------GGATGAGTG---TAC-GCGTGT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1298  ------TGCGT--G------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1299  -------------------TAGGAT-----GA-GTGTGC----GTGTGTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1300  -----A----------TAGGGGTGA-----GT-GTACAC----GCGTGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1301  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1302  ----CGTGCGT--TCAAAGAGTTAGT---GTA-TG-TAC--GT------G
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1303  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1304  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1305  GTGCG-----------------TTCA---TAG-GAGTGA----GTGTGTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1306  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1307  -----A----------T---------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1308  AATAGGGGTGA------------GTG---TAT-GGGCGT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1309  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1310  ----ACGC-GT--GTAACTTAAAAAAT--ATG-AGTGGT----ATGTGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1311  ----ATTCATA--TTCATATGATGAGT------GTATGT----GCGT---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1312  TGCATTCATAA------GGGTGAGTG---TGC-GCACGT----AT-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1313  ----CTTGCGT--TCTTATGGATAAG--------------TATACGCGCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1314  ----G--C-AG--TTATAGGGGTGAGT--GTA-CGTGCG----TGTTGGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1315  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1316  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1317  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1318  ---GTATACGT--TCATATGGGTGAG---TGT-ACG----CGCGTGTTGT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1319  -----T----------TGTGAGTGC-----AG-G----T----GCGTGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1320  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1321  -----G----------GGTGAGTGT-----GT-GTGTGC----GCGTGCT

GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out0     T-GTGTGTTTG---T--GAGAGC-ATT----TGTACTGCG--TTTCT---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1     --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out2     T-ACTTGTGAGC-----GTCCGC-GTC----TGTATTTTG--TTTCCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out3     -----------------------G-TT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out4     G-TGCGA---G---C--GTCTGC-ATT----TCTACCGTG--TTTTCAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out5     --GCGTATGTG---T--GAGTGC-TTG----CGTTGTGTT--TTCTTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out6     T-GTACGTGAGT-----GGTTGC-GTC----TGTACTGTG--TTTCGTGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out7     --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out8     T-ATTTGTGAG---A--GTTATT-GTA----TTTTCT-----------A-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out9     --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out10    T-GTGTGTGAG---T--GCTTGC-GTC----TGTACCGTG--TTTCCTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out11    -----------C-----ATATGC-ATC----TGTACTGTG--TTTAATTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out12    ---TGAGAGCG-------TCTGC-GTT----TGTACCGTG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out13    ---GTTGTGAG---G--GTCTGC-GTT----TGTAC----------TGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out14    C-------GAG---C--GTCTGT-GTT----TGTACCATG--TTTTAAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out15    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out16    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out17    GAGCGTTTG-----------C---GTT----TGTACCGTG--TTACTTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out18    T---TTGTAA--G-T--GT-------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out19    A-GCA-----------------------------TGTACG--TGTATG--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out20    T-GTGAGCGTC---T--G-------------------------TATTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out21    --GTTTGTGAG---C--GTCTGT-GTT----TGTATTGTG--TTTCCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out22    A-TGTTGTGAG---C--TTCTGC-GTT----TGTACTATA--TTCCTCA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out23    ---GTTGTGAG---C--GCATGC-GTC----GTTTGTACC--CTATTCT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out24    G-TGTTATGAG---C--ATCTAC-GTT----TGTATTTTG--TTGCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out25    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out26    T-GCCTGTGAG---C--GTCTGC-GTC----TGTACTGTA--TTTTCTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out27    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out28    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out29    T-GTGTGTGAG---T--GTGTT----------------------TCCTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out30    C-GTGTGTGAA---T--GCTTGC-GTC----TGTATTGTG--TTTTTTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out31    ---TGTGAGCG-------TCTAT-GTT----TATACTGTA--TTTCTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out32    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out33    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out34    --GGT---GAG---T--GTCTGC-GTT----TGTACTGTG--TTCCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out35    T-----GTGAGC-----ATCTGC-GTC----TGTATTGTG--TTTCCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out36    G-TGTTTTGAA---C--GTCTGC-ATT----TGTATTGTG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out37    T-------GAA---C--ATCTGC-ATT----TCTACCATG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out38    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out39    C---GTTTAC--A-A--TGTAA------------TCGATG--TTTTTTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out40    -----TGTAAG---C--GTCTAC-TTT----CGTACTTGT--TACTCAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out41    ----TTGTGAG---C--GTCTGC-GTT----TGTACCGTG--TTTCCTCC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out42    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out43    T-GTTTGTGAA---A--GTCCAG-TTT----TATAT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out44    G--------AG---C--ATCTGT-GTT----CCTACTGTG--TTTGTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out45    G-TGTTGTGAG---C--GTATGT-GTT----TGTACTGTG--TTCCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out46    T-GTGTGTGAGT-----GCTTGC-GTA----TGTACTGTG--TTTCCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out47    G-TGTTGTGAA---C--GTCTGC-G-------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out48    ---GTTGTGAG---C--GTTTTGCGTT----TGTACTGTG--TTTAAAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out49    ---GTTGTGAG---C--GTCT-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out50    ---TGTGAGCG-------TCTGC-GTT----TGTACTGTG--TTTAAAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out51    G-TGTTGTGAG---C--GTCTGC-GAT----TGTACTGTG--TTCCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out52    A-GTGTGCTCG---C--GTTTGT-GAG----CGTACTTTG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out53    T-GCTTGTGAG---C--GTCTGC-GTT----TCTTCTGTG--TTTTCTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out54    T-GCTTGTGAG---C--GTCTGT-GTT----CGTACTGTG--TTTCCTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out55    T-GTGTGTGAG---T--GCTTGC-GTT----TGTACTGTG--TTTCCTC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out56    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out57    T-----GTGAGC-----GTTTGA-TT-----TGTACTGCG--TTTCTTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out58    T-ATTTGTGAG---T--ATTTGC-GCT----TGTACT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out59    -----------------------------------CCGTG--TTTTTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out60    G-TGTTGTGAG---C--GTCTGC-ATT----TGCACCGTG--TTTCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out61    -------T------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out62    C-TTGTGAGCG---T----CTGC-GTC----TGTGCCGTG--TTTCCTCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out63    G-ATACGTGCC---T--ATTTGTG-AT----CGTCCGCTG--TTTTTGAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out64    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out65    T-TTGTGAACG-------TCTGC-GTT----TGTACTACG--TTACTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out66    ---TGTGAT-----C--ATCTGC-GTG----GTACTGTG---TTTTCTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out67    -----------------ACTTGC-GTC----TTTACTCTG--TTTCCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out68    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out69    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out70    ---------------------------------TACCGCG--TTTATAAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out71    T-GTTTGTGAG---C--GTCCGT-ATT----TATACAGGG--TTTGCAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out72    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out73    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out74    --TTGTAAG-----C--GTCTGC-GTT----TGTACTATG--TTTCCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out75    T-GTGTGTGAG---C--GTCTGC-GTT----TGTACTATG--TTTCAAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out76    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out77    C-TTGTTAGCA---T----TTTC-GTT----TGTATTGTA--TTTGTTCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out78    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out79    T-GTGTATGCT---A--GTCTGT-TTT----TATATTTTT--GTTTCTTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out80    -----------------GTGTGC-GTT----TGTACTCTG--TTTCCTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out81    T-ACTTGTGAG---C--GTTTGC-GTC----TGTATTGTA--TTTTCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out82    C-TTTCAAAGG---T--GCTCATA-TG----GGTAGAGTG--TAC-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out83    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out84    GT------GAG---C--ATCTGC-GTT----TGTACTGTG----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out85    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out86    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out87    T-TTGTGA------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out88    ----------G---C--GTGTGC-GTG----CGTACTGTG--TTTCCCA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out89    --GTGTGAG-----T--GCTTGC-GTT----TGTACTGTG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out90    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out91    ---TGTGAGTA-------TCTGC-GTT----TGTACTGCG--T-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out92    T-------GAT---T------GC-ATA----TGTACTGTG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out93    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out94    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out95    T-AATTGTGAG---C--GTTTGC-GTC----TGTACTGTG--TTTCCTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out96    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out97    C---ATAGAAGGT-G--ATCGGC-GTA----TG-TGCGTG--TTTGTGA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out98    --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out99    G-TGTTGTGAG---T--GTCTGC-GAT----TGTACTGTG--TTCTAAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out100   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out101   T-GTTCGTAAG---C--GTCTAC-GTT----TGTACCGTG--TTTCTTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out102   ----GTGTGAG---T--GCTTGC-GTT----TGTACTGCG--ATTCCTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out103   ---ATTGTGAA---C--GTCTGC-ATT----TGTACTGTG--TTTCTCA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out104   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out105   G-TGTTGTGAC---C--GTCTGC-GTT----TGTACCGTG--TTTCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out106   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out107   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out108   ---TCTGCGTT---T--AACTGT-GTT----TTTT----T--TTATAAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out109   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out110   ---------GA---G--TGCTTG-CGT----TGTACTGCG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out111   T-----ATGATC-----ATCTGC-GTC----TGTACTACG--TTTTCTCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out112   T-GAGTGTGAG---T--GCTTGC-GTC----TGTACTGTG--TTTCCTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out113   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out114   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out115   G-TTTTGTGAG---C--ATTTGC-GTT----CGTACTGTG--TTTCAAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out116   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out117   TGAACTC-------------TGT-GTT----TGTATCGTG--GTTTCCCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out118   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out119   C-TGTTGTGAG---C--GTTTAC-GTT----TGTACCGTG--TTTCTTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out120   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out121   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out122   G---T---------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out123   G--------AG---C--ATCTGC-TTT----TGTATTTTT--TACATGAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out124   --G-T---CAG---C--GTCTGC-GTT----TGTACCGTG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out125   T-------GAG---A--GTATAT-GTT----TGTACTATG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out126   G-TGTTGTGAG---C--GTCTGT-GTT----TGTACTGTG--TTTTTGA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out127   ---TTCGTGAG---T--GGTTGC-GTT----TGTACCGTG--TTTCTTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out128   T-GCGTGTGAA---T--GCTTCC-GTC----TGTATCATG--TTTCTTTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out129   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out130   --AAAA--------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out131   ---TGTACGTG---C--GTTTGT-GTT----TGTAGTGCG--CTTTTCA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out132   T-GTGTGTGAG---T--GCTTGC-GTC----TGTACTGTG--TTTTCTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out133   --TGT---GAG---C--GTCTGC-GTT----TCTACTGTG--TTCCTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out134   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out135   T-GAGCGTCAG---C--GACTGC-GTC----TCTACTGTG--TTTCTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out136   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out137   T-GTACGTAAG---T--GCTTGC-ATA----TGTGCTATG--TTTCCTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out138   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out139   T-GTTTGTGAC---C--G--TTG-CGC----CGTACTGTG--TTTACTCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out140   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out141   --AAGGGTGAG---T--GTACGTG-CT----TGTT---------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out142   T-GTGTGTGAG---T--GCTTGC-GTC----TGTACTGTG--TTTCCTC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out143   T-------GCT---T------GC-GTC----TCTACTCTA--TTTCCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out144   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out145   T---TTGTGA--A-C--GGTGT------------ACCATG--TTTTTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out146   T-GTTTGTGAG---C--GTCTTC-GTT----TGTACTGTG--TTTCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out147   T-------AAG---C--GTCTGC-CTT----TGTACCGTT--TTTCTCAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out148   C-TGTTGTGAG---T--GTCTGC-GTT----TGTACTGTG--TTCTAAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out149   T---ATT-------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out150   T-------GAA---C--GTCTGC-GTC----TGTTGT------TTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out151   C-TTGTGAGTG---T----CTGC-GTC----TATTCTGTG--TTTCCTCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out152   T-GTCTGAG-----T--GTTT-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out153   T-TTGTAAACG---T----CTGC-ATT----TGTACTGTG--TTTCTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out154   ---TGTGTGAG---C--GTCTGC-GTT----TGTGATGTA--CGTGTTC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out155   T--G---TGTT---T--GTACTG-TGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out156   T-ATTTATGAG---C--GTCTTC-ATT----TGTACGGTG--TGTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out157   ---TGTGAGCG-------TCTGC-GTT----TGTACCGTG--TTCCTGAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out158   T-GTGA--------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out159   T-GTTTGTGGA---C--AACTAC-GCC----TTTAGTGTG--CTTCCTC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out160   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out161   T-------GAC---C--GTTTGT-GTA----TGTATTTTG--TTTTCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out162   T---TATA------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out163   G-TGCTGTGAG---C--GTCTGC-GTT----TGTACTGTG--TTTCTCA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out164   G-TGTTGTGTG---C--ATCTGC-GTT----TGTACTGTG--TTCTAAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out165   -----TGTGAG---C--GTATGC-ATT----TGTACTGTA--TTCCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out166   -----TGTGAG---C--GTCTAT-GTT----TATATTGTG--TTCTAAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out167   --TAT---GAG---C--GTCTGC-GGT----TGTACTGTG--TTCCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out168   T-GTGTGTGAG---C--GTCTAC-ATT----TTAC-TGTG--TTTCTTTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out169   T-ACTTGTGAG---T--GTCTGC-GTC----TGTACTGTG--TTTCCTC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out170   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out171   ---TGTGAGCG-------TCTGC-GGT----TGTACCGTG--TTCCTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out172   --GTGTGAG-----T--GCTTGC-GTC----TGTACTGTG--TTTGAAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out173   T-------GCT---T------AC-GTC----TGTACTGTA--TTTCCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out174   ---ATTGTGAT---A--GTTTGC-GTT----TGTATTGTG--TTTCTAT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out175   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out176   T-GTTGGTGAG---C--GTCTGC---------GTA----T--TTTCTTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out177   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out178   --GTTAT-GAC---C--TTCTTC-GTT----TGTCCGTGG--TTTTCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out179   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out180   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out181   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out182   --GGTCGTGAG---A--CTC--T-ACG----TGTACTGTG--TTTCTTGA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out183   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out184   ----TTGTGAG---C--GTCTGC-GTC----TATACGGTG--TTATCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out185   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out186   C---AG--TAGGG-G-----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out187   --AGGGATATG---T--GAACACG-TG----TGTTGTACG--TGT-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out188   ---------AG---C--GTCTAC-GTT----TGTACTGTG--TTTCTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out189   A-TATTGTGAG---C--GTCTGC-GT------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out190   T-GCTTGTGAG---C--GTCTGC-GTC----TGTACCGTG--TTTCCTC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out191   ----------G---T----CTGC-ATT----TGTACTGTG--TTACT---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out192   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out193   T-GTGTGAGTGC-----TTGCGT-CTG----TGTACTATG--TTTCCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out194   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out195   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out196   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out197   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out198   ---TGTGAGCG-------TCTGC-GTT----TGTACTGTG--TTCTAAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out199   G-TGTTGTGAG---C--GTCTGC-GTT----TGTACTGTG--TTCCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out200   T----TGTGAAC-----GGCTGC-GTC----TGTACCGTG--TTTCCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out201   G-TGTTGTTAA---C--ATCTGT-GTT----TGTACTGTG--TTCTAGAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out202   C---ATCTAC--A-A--TAAAA------------TCGACG--TTTCTCA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out203   T-GTTTGTGAAT-----GTCTGT-GTT----TGTATTGTA--TTTCTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out204   G-TGTTGTGAG---T--GCCTGT-GTT----T------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out205   T---GTCTTC--A-C--CGTAA------------TCGATG--TTTCTTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out206   G-TGTTTGTGA---CGTATACGT-GTC----TATACCATG--TTTCTCTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out207   A-TGTTGTGAG---C--GCCTGC-GT------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out208   ---------AG---C--GTCTGC-GTT----TGTACTGTG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out209   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out210   G-TGTTGTGAG---C--GTCTGC-GTT----TGTACTGTG--TTTCTCA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out211   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out212   G-TAATT---G---T--GAATGT-AAC----TCTATATTG--TGTTT---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out213   G-TGTTGTGAG---C--ACCTGC-GTT----TGTATTTGT--TTCTAAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out214   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out215   T-GTTTGTGAG---C--GTGTGC-GTT----TGTATCGTG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out216   ---GTTGTGAG---C--GTCTGC-GTT----TATACTGTG--TTATAAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out217   T-----GTGAAC-----GTCTGT-GTC----TGTACTGTG--TTTTTTCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out218   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out219   T-GTTTGTGAG---C--GAGT-------------ACAATG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out220   T-GTTTGCGAG---C--GTCTGC-GTT----TGTATTGTG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out221   G-TGTTGTGAA---C--GTCTGC-ATT----TGTACCGTG--TTTCTCA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out222   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out223   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out224   -----TGAGCG-------TCTGC-GTT----AGCACTGGG--TTCTCGAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out225   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out226   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out227   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out228   T-GTTTGTGAT---C--GTCTAA-GTT----TGTACTGTG--TTTCCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out229   ----TGTGACG-------TCTGC-ATT----TATACTGTG--TTTCTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out230   ---CTTGTCAA---C--ATTGTG-T-A----ATGTGTTTC--T-----A-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out231   --TTACGAGCG---T------CT-GAC----TATACTATG--TTTCCTGA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out232   T-ATTTACGAG---C--GTGTGC-GAT----TATGCTATG--TTCCCAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out233   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out234   T---GTGTGACT-----GTTTGT-GTC----TGTACTATG--TTTCCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out235   T-GTTTGTAAA---T--GTCTAC-ATC----TATACTACG--TTTCTCGA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out236   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out237   T-------GAG---C--ATCTGC-GTG----TATACCGTG--CTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out238   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out239   ---TGTGAGCG-------TCTGC-ATT----TGTGTTGTG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out240   T-------AAG---C--GTTTGG-GTT----TGTACAGTG--TTTCTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out241   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out242   T-------GAG---C--TTCTGT-GTT----TTTACGGTG--TTTCCTCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out243   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out244   ---TGTGAGCG-------TCTGC-GTT----TGTACTGTG--TTTCTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out245   G-ATGTGTTTG---C--AAGCATA-TG----CGTTTATAC--TGTATTTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out246   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out247   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out248   T-------GAG---T--GTTTAC-GTC----TGTAACGTG--TTTTAAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out249   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out250   T-ATTTATGAG---A--GTCTGC-CTT----TGCACCGTG--TTTCTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out251   T-GTGTGTGAG---T--GCTTGC-GTC----TGTACTGTG--TTTTCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out252   ---TGAGCGTC-------TGTGT-TTT----TGTACTGGG--TTACTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out253   ----TTGTGAA---C--GTCTGC-GTC----TGTAGCGTG--TGTTTGCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out254   T-GCGTGTGAG---T--GCTTGC-GTC----TGTACTGTG--TTTCCAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out255   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out256   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out257   C-GCGCGTGAG---C--GTCTGC-CTT----TGTACTCAC--GTGTCCTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out258   C-GTGTATGAGT-----GCTTGC-GTC----TATACTATG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out259   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out260   -----------------------------------CTGTG--TTCTCAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out261   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out262   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out263   G-TGTTGTGAG---C--GTCTGC-GTT----TGTACTGTG--TTTCTCA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out264   T-GCTTGTGAGC-----GTCTGT-GTC----TATACTGTA--TTTCCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out265   C-TATGGTG-----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out266   A-TGAGCATCT------ACTTGC-GTT----TGTACCGTG--TTTCTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out267   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out268   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out269   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out270   C-GCGTGTGAG---C--GTCTAC-GTT----TGTACCGTG--TTTCCAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out271   A-AGTTGTGAG---C--GTCTGC-GTT----TGTACTGTG--TTTCTCTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out272   T-TTGTGAG-----C--GTCTAC-GTC----TGCAGTGTG--TTTCTCA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out273   -----GGTGAG---C--GTCTTC-GTT----TGTGTTATG--TTTCTCAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out274   T-ACTTGTGAGC-----GTCTGC-GTC----TGTACTGTG--TTTTCTCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out275   ------------------------------------------T-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out276   ---TGTGAGCG-------TATGC-GGT----TGTACTATG--TTCCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out277   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out278   ---TGTGAGCA-------TTTAC-GTT----TGTAGTGTG--TACCTA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out279   T-TTGTGAGCG---T----CTGC-GTT----TGTACTGTG--TTTCTTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out280   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out281   G-TGTTGTGAG---C--GTCTGC-GTT----TGTACTGTG--CTTTTCTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out282   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out283   T-GTGTACGAGT-----GCTTGC-GTC----TGTACTGCG--TTTCCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out284   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out285   T-GCTTGTGAT---C--GTCTGC-GTA----TGTACTGTG--TTAATAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out286   ---TGTGAGCG-------TCTGC-GT------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out287   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out288   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out289   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out290   ---------AG---C--ATCTGC-GTT----TGTACTGTG--TTTCTGAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out291   G-TGTTGTGAG---C--GTCTGC-GTT----TGTACCGTG--TTCCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out292   --GTGCGTGCG---T--GTTCGTG-AG----CGTCTATTG--TTTCCTCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out293   G-TGTTGTGAG---C--GTCTGC-GTT----TGTACTGTG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out294   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out295   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out296   ---CTTTTGTG---A--GC-------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out297   T-GTGTGTGAG---T--GCTTGC-GTC----TGTACTGTG--TTTCCTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out298   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out299   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out300   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out301   ---TGTGAGCA-------TCTGC-ATT----TGTACTGTG--TTTCTTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out302   G-TGTTGTGAG---C--GTCTAT-GTT----TGTACTGTG--TTTAAAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out303   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out304   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out305   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out306   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out307   G-TGTTGTGAGT-----GTTGGG-TTT----TGTACCGTG--TTCTTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out308   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out309   ----GTGAACG-------TCTAT-GTT----TGTAATGTG--TTTCTCAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out310   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out311   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out312   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out313   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out314   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out315   ---TGTGAGTG-------TCTGC-GTT----TGTACCGTG--TTCCAAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out316   -----TGTGAG---C--GTCTGC-GTT----CGCAATATA--TATC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out317   A-TGTGTTGTG---C--GTCTGC-GTT----TGTACTGTG--TTTCTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out318   -----------------------G-GG----TGAAT--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out319   G-TGTTGTGAG---C--GTCTGC-GTT----TTTACTGTG--TTTATAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out320   ---TGTGTGAG---C--GTCTGC-GTT----TGTACCGTG--TTTTTTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out321   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out322   C-GTGTGTGAG---T--GCTCAC-GTC----TGTGCTGTG--TTTCCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out323   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out324   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out325   -------------------------------GAGAC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out326   T-----GTGAGC-----GTCGAC-ATT----TGTACCGTG--TTTCCTCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out327   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out328   T-GTTTGTGAG---C--GTCTGC-GTT----TGTATTGTA--TTTCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out329   T-----GTGAGT-----GTCTGC-GTC----TATGCTGTG--TTTGCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out330   T-GTTTGTGAGC-----GTCGGC-ATC----TGTACATGT--TTTCAAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out331   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out332   T--CTG-CTTT---T--GTATTG-TGT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out333   G-TGTTGTGAG---C--GTCTGC-GT----------TACG--TTTCTTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out334   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out335   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out336   T-GTGTGTGAG---T--GCTTGC-GTC----TGTACTGTG--TTTTCTC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out337   A-GTTTGTGAA---T--GTCTAC-ATA----TGTCTTTTT--TTTAATAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out338   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out339   T-GTGTGTGAG---T--GCTTGC-GTC----TGTACTGTG--TTTCCTC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out340   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out341   --AAAAA-------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out342   --TTGTGAA-----C--GTCTGC-GTC----TGTACCGTG--TTTCCTCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out343   T-TTGTGAGCG---T--CTATTT-GTA----TGTAGTCCA--TTTAAAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out344   T-GTGTGTGAG---T--GCTTTT-GTC----TGTAGTGTT--TCCTCAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out345   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out346   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out347   T-ACTTGTAAG---T--GTCTGC-ATC----TGTACTGTG--TTTCCTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out348   ----------------------C-GTC----TGTACCGTG--TTTTCTC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out349   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out350   G-TGTTGTGAA---C--GTCGGC-GTT----TGTACTGTG--TTTTTCA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out351   T-GTGTGTGAG---T--GCTTGC-GTC----TGTACTGTG--TTTCCTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out352   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out353   ------ATGAG---T--GTAAGTG-TG----TG-----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out354   --GTGTGTGAG---T--G--------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out355   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out356   T-GTTTATGAAC-----GCCTAT-GTT----TGTATTGTG--TTTTCTCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out357   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out358   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out359   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out360   A-TTGTACGCG---C--ATGTTG-TGA----GTTACTGTG--TTACTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out361   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out362   T-CTTTGTGAG---C--TTCTGC-TTT----TGTATTATA--GTTCTTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out363   T---TGTG------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out364   --TGT---AAC---C--GTCTGC-GTT----TGTACTGTG--TTTCTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out365   --TGT---GAG---C--GTTTGC-GTC----TGTACTGTG--TTTCGTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out366   ---GTTGTGAG---C--GTCTGC-GTT----TGTACTGTG--TTTCTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out367   --GTGAGTGTA---C--GTGCGTG-T------TGTGAG------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out368   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out369   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out370   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out371   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out372   ----TTGTGAG---C--GTC------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out373   ---GTTGTGAG---C--GTCTGC-GTT----TGTATTGTG--TTCTCATA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out374   C---ATATGT--G-T--TTTGT------------G---AG--TGTCT---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out375   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out376   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out377   ------GTGAG---T--GCTTGT-GTA----TGTCCTGTG--TTTCCTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out378   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out379   T-GTTTGTGAG---C--GTCCGA-GTT----TTTATCGTG--TTTCTCAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out380   A-TATTGTGAA---C--TTCTGT-GTC----TGTAGCGTG--TTTCTTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out381   T-ATTTTTTAA---C--ATATGC-AAC---------TGTG--TTTCATAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out382   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out383   --TGTTGTGAG---C--GTCTGC-GTT----TGTACTGTG--TTTCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out384   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out385   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out386   T-ATTTATGAG---C--GTCTGC-GTC----TGTACTGTG--TTTTCTCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out387   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out388   G-TGTTGTGAG---C--ATTTGC-ATT----TGTACTGTG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out389   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out390   ---GTTGTGAA---C--ATTTGC-GTT----TGTATTGTG--TTTGTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out391   C-GCGTGTGAG---C--GTCTGC-GTT----TGTACTGTG--TTAAAAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out392   T-GTTTGTGGG---C--GTCTGC-GTC----TGTATTGTG--TTTTCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out393   T-GTTTCTGAG---C--ATCTGC-GTT----TGTACTGTG--TTTTCTTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out394   G-------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out395   T-ACTTGTGAG---T--GTCTAC-GTC----TGTATTGTG--TTTCCTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out396   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out397   AATCGTC-------------TGT-GTT----TGTACTGTT--GTGTTTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out398   ----------------------C-GTC----TATACTGTG--TTTCCTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out399   -----TGTGAG---C--GTCTGC-GTT----TGTACTCTG--TTCCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out400   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out401   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out402   ---TGTGTGAG---C--GTCTGT-GTT----TGTACCGTG--TTCTTCA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out403   T-TGA----GTT-----GTATGC-ATT----TGTACTGTG--TTTCTTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out404   C-CTGTGAGTG---T--CTGCGT---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out405   ------------------------------------------TTAAC---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out406   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out407   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out408   --TTGTGAGCG---T--ATTTG---TT----TGTACGGTG--TTTCCTCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out409   T-------GAG---C--GTTCAC-GTT----TGTATTGTG--TTTTTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out410   ---TGTGAGCG-------TCTGC-GTT----TGTACTGTG--TTTCTTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out411   --ATTTGTGAG---C--GTCTGT-GTT----TGTGCCGTG--TTTGGAAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out412   --GTGTTTGTG---A--AGCCTCCGTC----TGTACTATT--TCTGCTTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out413   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out414   -----TGTCAA---C--GTCTGC-GTT----TGTACTGTA--TT------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out415   --------------------------C----TGTGTTTCT--AAAAAAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out416   C-GTTTGTGAA---T--GTATGC-GTT----TGTATTTGT--GTTTCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out417   T-------GAA---A--GCTTAT-GTC----TTTAGTGTG--TTTACTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out418   G-TGTTGTGAG---C--GTCTGC-GTT----TGTATTGTG--TTTTTTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out419   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out420   T-ATTTGTAAGT-----GTCTCC-GTC----TGTACCGTG--TTTTCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out421   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out422   T-GTTTGTGAG---T--GTTTGC-GTT----TGTACCATG--TTTGCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out423   G-TGTTGTGAG---C--GTCTGC-GTT----TGTACTGTA--TTTCTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out424   T-TCCTAAA-----A--AAA------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out425   T-----GTGAAC-----GTCTCC-ATT----TGTACTGTT--TTTCTTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out426   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out427   ---GTTGTGAG---C--GTCTGT-GTT----TGTATTATG--TTCCTCG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out428   G-TGTTGTGAG---G--TTCTGT-GTT----TGTACTGTT--CCTAAAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out429   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out430   T-GTTTGTGAT---C--TTCTGC-GTC----TATAC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out431   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out432   C-GTGTGTGAG---T--GGTGCG-TCT----TGTATTGTG--TTTCCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out433   T-GTTTGTGAA---C--GTCTGC-GTT----TGTACCGTG--TT------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out434   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out435   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out436   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out437   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out438   T-GTTTGTGAA---C--GTCTGC-GTT----TGTACTGTG--TTTTCTCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out439   ------GGGCG-------TCTGC-GTT----TGTACCGTG--TGTCTGTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out440   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out441   T-GTTTTTTAG---C--GTCTGC-GTT----TGTACCGTG--TTTTTCA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out442   TGGCGTTTG-----------C---GTT----TGTACGGTA--TTTCTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out443   G-TCTTGTGAG---T--GTCTGC-GTT----TGTACTGTG--TTTCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out444   G-CTTGTGAG----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out445   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out446   T-GTGTGTGAA---T--GCTTGT-GTC----TATACTGTG--TTT-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out447   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out448   T-TTTTGTAAGC-----ATCTGC-GTT----TGTACTGTC--GTTTTCTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out449   T-GTTTGTGAG---C--GTTTGC-GTT----TGTATTTTC--TAAAAAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out450   ---TGCTTGCG---C--CTGTAC-TGC----TGTACTGTG--TTTCCTT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out451   T-GTGTGTGAG---T--GCTTGC-GTC----TGTATTGTG--TTTCCTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out452   G---AATGTATGG-G--CGTGT------------TGTGA-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out453   T-GTGTGTGAG---T--GCTTGC-GTC----TTTACTGTG--TTTCCTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out454   ---GTTCTGAG---T--GACTGC-GTT----TTTACTGTG--TTCTAAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out455   G-TGTTGTGAG---C--GTCTGC-GTT----TGTACCGTG--TTTCTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out456   G-TGTTGTGAG---C--GTCTGT-ATT----TGTATTGTG--TTTGTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out457   ---TTGTGAGC---C--GTCTAC-GTA----CGTGCTTTGCTTTTCTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out458   G-TGTG-TGAG---C--GTCTGC-GTT----TGTACTGTG--TTTCTCA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out459   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out460   G-TGTTTTGAA---T--GTCTGC-GTC----TGTACTGTG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out461   ---TGTGAGCG-------TCTGC-GGT----TGTACTATG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out462   ---TGTGAACG---T----CTGC-GTT----TATACTGTG--TTCTCAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out463   T-GTGTGAG-----------TGA-TTA----CGT----CG--TTTCCTT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out464   G-TGTTGTGAG---G--GTCTGT-GTC----TGTACTGTG--TTTCCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out465   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out466   T-GTTTATGAG---C--GTTCAC-GTT----TCTACTGTG--TTTCCTC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out467   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out468   --TGT---GAG---G--GTCTGC-GTT----TGTACTGTG--TTCTCAAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out469   -----TGTGAG---C--GTTTGC-GTC----TGTACTGTG--TTTCCTCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out470   T-TTGTGAGCG-------TTTGG-ATT----TGTATCTTG--TTTTCTCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out471   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out472   G-TGTTGTGAG---C--GTCTGC-GTT----TGTACTGTG--TTCTAAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out473   --GTGTGTGAG---C--GTCTGCG-TC----TGTACTGTG--TTTTCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out474   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out475   ---TTTGCAAG---C--GTCTGA-GTC----TGTAC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out476   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out477   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out478   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out479   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out480   T-GTTAGTGAG---C--GTCTGC-GTT----TGGACTGTA--TTTTT---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out481   T-TTGTGAACG---T----ATGC-GGT----TGTACTATG--TTTTCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out482   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out483   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out484   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out485   --GGTTGTGAG---C--GTTTGCA-TC----CATAGCGTG--TGTTTTT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out486   G-TGCTGTGAG---C--ATCTGC-GTT----TGTACTGTG--TTCTAAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out487   T-GTTTGTGAA---C--GTCTAC-GTC----TGTACTGTG--TATTTCAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out488   --TGT---GAG---C--GTCTGC-GTT----TGTACTGTG--TTCTAAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out489   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out490   T-GTGTC-------------------------GAACTGTG--TTTTCTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out491   ---GTTGTGAG---C--GTCAGC-GGT----TGTACCGTG--TTTCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out492   T-GTGTGTGAGT-----GGTTGC-GTA----TGTACTGTG--TTTTTCCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out493   C---ATTTAT--T-C--AAAGT------------ACTGCG--TTT-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out494   ---GTTGTGAG---C--GACTGC-GTT----TGTACTGTG--TTTTAAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out495   ---GTTGTGAG---C--GTCTGT-GTT-----------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out496   T-------GAG---C--GTCTAC-TTT----TGTACCGTG--TTTCCTTG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out497   G-TGTTGTGAG---C--GTCTGC-GTT----TGTACCATG--TTCTAAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out498   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out499   G-TGTTGTGAG---C--GTCTGT-GTT----TGTACTGTG--TTTCTCA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out500   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out501   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out502   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out503   T-GTTTGTGAGC-----GTC-----------TGTTATGTG--TTTCCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out504   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out505   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out506   --G-T---GAA---C--GTCTGC-GTT----TGTACTACG--TTTCTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out507   ---GTTATGAG---C--GTCTGT-TTT----TGTACCGTG--TTTTTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out508   ---GTTGTGAC---C--GTCTGC-GTT----TCTACCGTG--TTCTCAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out509   -------TGCT---C--GTGTGC-GCG----CGCGCTTGC--GTTGTACT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out510   ---TGTGTGAA---C--GTCTGC-GTT----TGTACTGTG--TTTCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out511   ----------------------------------------------TCC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out512   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out513   T-GTGTACGAG---T--GTTTGC-GTT----TATACTGTG--TTTCTTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out514   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out515   C-TGTTGTGAG---C--GGCGT----T----TGTACTGTG--TTCCTCG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out516   T-GTTTGTGAG---C--GTCAGT-GTT----TGTATTGT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out517   T--ATGCATGT---T-----------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out518   T-----ATGAGC-----GTCTAC-GTC----TATATTGTG--TTTCCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out519   T-GTTTGTGAG---T--CTCTGC-GTT----TGTACTATG--TTTCTCA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out520   C-GTGTGTGAT---C--ATCTGT-GTT----TGTACTTTG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out521   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out522   T-GTTTGTGAGC-----GTCTAC-GTA----TGTACTGTT--TTTTTTTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out523   -----CATGCT---C--GTGAG----T----GTTTGCGTG--TTTCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out524   ---TGTGACGG-------TCTGC-GTT----TGTACTATG--TTCTCATA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out525   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out526   T-TTGTGAGCG---T----CTGC-GTC----TGT----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out527   --TGT---GGG---C--GTCTGC-CTT----TGTATTGTG--TTCCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out528   ---TGTGAG-----C--GTCTGC-GTG----TGTGCTATG--TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out529   --TGT---GTG---C--GTCTGC-GTT----TGTACCGTG--TTCTCAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out530   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out531   ---TGTGAGCA-------TCCGC-GTT----TGTATTGTG--T-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out532   --CGCGTGTTG---T--GAGCGTC-AC----TTGTACTGT--TTTTCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out533   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out534   T-GCTTGTGAA---C--GTCTAT-GTT----TCTATTGTA--TTTCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out535   ---TGTGAGCG-------TCTGC-TTT----TGTACTGTG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out536   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out537   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out538   T-ACTTGTGAG---C--GTCTGC-GTC----TGTACTGTG--TTTCCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out539   T-GTTTGTGAA---C--ACCTGT-GTT----TGGACTGTG--TT------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out540   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out541   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out542   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out543   -------------------------------------------T------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out544   T-GTGTGCAAG---T--GATTGC-GTC----TGTACTATG--TTTCCTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out545   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out546   G-TTG--TGAG---C--GTCTGC-GTT----TGTGCTATG--TTTCTCA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out547   T-------GAA---C--TTCTAT-GTT----CATACTATG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out548   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out549   T-GTGTGTGAG---T--GCTTGC-GTC----TGTACTGTG----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out550   T-GTTTGTGAG---C--GTCCGC-GTT----TGTGTTGTG--TTTCTCCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out551   G-AATTATAAG---C--GTCCGT-GTC----TGTGTTTCC--TAAAGTGA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out552   GAGTGTCTG-----------A-C-GTT----TGTACCGTG--TTTCTTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out553   G-TGTTGTGAG---T--GTCTGT-GTT----TGTACTGTG--TTTGTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out554   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out555   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out556   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out557   T-TTCCTAA-----A--AAAA-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out558   T-GT--GTGAGT-----GCTTGC-GTT----TGTGCTGTG--TTTTCTGA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out559   G-TATTGTGAG---C--GTCTGC-GTT----TGTACTGTG--TTCTAAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out560   ----------------------------------AC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out561   T-AAAAAAA-----A--A--------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out562   T-GCCTGTGAGC-----GTTTGC-GTT----TGTAATGTG--TTTCAAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out563   T--CTG-CGTT---T--CTCATG-TTT----CACCGATGT--TTTTGAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out564   --------------------AGT-GTA----CGCGCTGTT--GTGA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out565   ---TATGAGCG-------TCTGC-GGT----TGTAAGGTG--TTCCTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out566   G-TGTTGTGAG---C--ATCTGC-GTT----TGTACTGTA--TTTTTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out567   T-------GCT---T--GCGTGC-GTC----TGTACTGTT--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out568   C-------GAG---C--GTCTGT-GCC----TGTAATCTG--TTTTCTCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out569   T-GTGTGCAAG---T--GCTTGC-GTC----TATACTGTG--TTTAAAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out570   T-GTTTGTGAG---T--GTTTGT-GTT----TGTACTGAG--TTTCTTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out571   G-TGTTGCGAG---G--GACTGC-GAT----TGTAATGTG--TGTTCTGA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out572   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out573   T-GTTTGTGAAC-----TTTTGT-GTT----TGTACTGTG--TTTGCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out574   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out575   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out576   --TTGTGA--G---C--GCCATTG-T-----------ATT--T-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out577   T-GCTTGTGAGC-----GTTGCG-T-C----CGTACTGTG--TTTACTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out578   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out579   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out580   T-----GCGAGC-----GTCTGC-GTC----TATACTGTG--TTTCCTTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out581   ----------G---C--G--------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out582   C-TTGTGAGCG---T----ATGC-GTC----TGTGTTTCC--TAAAAAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out583   T-------GAG---C--ATCTGC-GTT----TGTACTGTG--ATTCTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out584   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out585   --TGT---GAG---C--GTCCGC-GTT----TGTATTGTG--TTCCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out586   ---GTTATGAG---C--GTCTGC-TTT----TGTACTGTG--TTCGTCA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out587   T-GTGTGTGAGT--G--CTTTGC-GTC----TGTACTGTG--TTTTCCCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out588   ---TGTGAGCG-------TCTGC-GTT----TGTAGTGTA--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out589   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out590   G-TGTGT-GAG---C--GTCTGC-GTT----TGTATTGTG--TTCTAAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out591   G-TGTTGTGAG---C--GTCTGC-GTT----TGTACTGCG--TTTCTGA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out592   T-GTTTGCGAG---T--AGATGT-GTT----CGTA--GTG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out593   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out594   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out595   T-----GTGAGT-----GTCTGC-GTC----TGTACTGTG--TTTCCTCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out596   ---TGTGTGAG---C--GTCTGC-GTT----TGTACCATG--TT------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out597   T-GCTTGTGAG---C--ATCTGC-GTC----CGTACTGTG--TTTCCTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out598   ---------------------------------TACTGTG--TTTCTTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out599   ---------------------GC-GTT----TGTACTGTG--TTTCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out600   ---TGTGAGCG-------TATGC-GTT----TGTACTATG--TTCTAA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out601   -------TGTG---A--GC--AG-T-T----TGTAATGTG--TTTTTTT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out602   ---------------------------------TACTGT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out603   T-GTTTGTAAGC-----GTCTGC-GTT----TGTACTATG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out604   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out605   T-GTTTGTGAG---T--GCTTGC-GCT----TGTACGGTG--TTTCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out606   T-GTTTGTGAA---C--GTCTGT-GTT----TGTACTGTG--TTTCTCA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out607   G-TGTTGTGAG---C--GTCTGC-GTT----TGTACTGTG--TTCCTCA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out608   ---------------------------------------G--TATCTGT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out609   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out610   T-GC----TTGT-----ACCAGC-GTT----TGTACTGTG--TTTAAAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out611   G-TGTGT-GAG---C--GTCTGT-GTT----TGTATTGTG--TTTCTCA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out612   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out613   ---GTTGTGAG---C--GTCTGC-GTT----TGTACTGTG--TTTCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out614   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out615   --TGT---GAG---C--GTCTGC-GTT----TGTA---------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out616   T-GTGTGTGAG---T--GCTTGC-GTC----TGTACCGTG--TTTCCTTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out617   G-TGTCGTGAG---C--GTCTTC-GTT----TGTACTGTG--TTTCTCAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out618   ---GTTGTGAG---C--ATCTGC-GTT----TGTACTATG--TT------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out619   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out620   G-TGCTGTCAG---C--GTTCGC-GTT----TGTATTGTG--TTACTTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out621   ---TGTGAGCG-------TCTGC-GTT----TGTACTGTG--TTTCTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out622   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out623   T-------GAG---C--GTCTTC-GTC----TATACTGTA--TTTACTTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out624   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out625   -------TGAGC-----GTTTGC-GTC----TGAACTGTG--TTTCCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out626   T-GATTGTGAG---C--GTTTGC-GTC----TGGACTGTG--TTTCCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out627   T-T---ACGAG---C--ATATGT-GTT----TGTACCGTC--TTTCTAAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out628   C-GTCGGTGTT--------------------TGTATTGTG--TTTTTTTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out629   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out630   -----------------------C-TT----TGTACTGT---GTTACTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out631   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out632   T-GTGTGCGACT-----GCTTGA-GTC----TGTACTGTG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out633   T-TTGTGAGCG---T----CTGT-GTC----TGTAATGTG--TTTTTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out634   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out635   --TGTTGTGAG---C--GTCT-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out636   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out637   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out638   -----TGTAAG---C--GTCTGT-GTT----TGTATTGTG--TTTCTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out639   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out640   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out641   G-TGTTGTGAG---C--GTTTGC-GTT----TATACTGTG--TTTCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out642   G-TGTTGTGAG---C--GTCTGT-GTT----TGTACTGTG--TTCCTCA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out643   --GTGTGTGAG---C--GTCTGCA-TT----TGTACCGTG--TTTCTAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out644   T-GTTTGCGAG---C--GTCTGC-GTT----TGTACCGTG--TTCGTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out645   T-GCTTGCGTCT-----GTAC----------TGTACTGTG--TTTTAAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out646   ---GTTGCGAT---C--TTCTGC-GTA----TGTACTGTG--TTAAAAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out647   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out648   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out649   T-------G---------CTTGC-GTC----TGTACTGTA--TTTTCTTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out650   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out651   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out652   --------------------------------TTACCGTG--TTTTTGA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out653   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out654   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out655   T-GTGTGTGTGC-----GCTTGT-GTT----TGTACCGTG--TTTCTGAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out656   --TGT---GAG---T--GTCTGC-ACT----TCTATTGTG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out657   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out658   G--------AA---C--GTTTGC-ATT----TGTA---------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out659   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out660   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out661   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out662   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out663   T-GTTTGTGAGT-----GTATGT-GTC----TGTACTGTG--TTTCCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out664   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out665   -----CATATT---T--GTGAGC-GTT----TGTACTATG--TTCCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out666   -----TGTAAG---T--GTCTGT-GCC----------GTG--TTTCTTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out667   GAGTGTT--------------GC-GTC----TGTATTGTG--TTTAAAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out668   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out669   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out670   -----------------GTTTGT-GTT----TGTACTGTG--TTTCTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out671   T-GTTTGTGAG---C--GTCTGC-GTT----CGTGC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out672   G-TGTTGTGAG---C--ATCTGC-ATT----TGTACCGTG--TTTATAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out673   -------TGTA---C--GTG------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out674   T-GTGTGTGAGT-----GCTTGT-GTA----TGTATTGTG--TTTCCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out675   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out676   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out677   ---GTTGTGAG---C--GTCTGC-GTT----TGTACAGTG--TTTAAAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out678   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out679   G-TGTTGTGAC---C--GTCTAC-TTT----TGTACTGTG--TT------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out680   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out681   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out682   G-TGTTGTGAG---A--GTCTGC-GTT----TGTACTGTG--TTCTAAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out683   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out684   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out685   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out686   T-GTTTATGAGC-----GTCCGC-GTC----TGTACTGTG--TTTACTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out687   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out688   T-TGCACTGTG---T--TTCTAA-AAA----AAA----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out689   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out690   T-GCGTATTTG---T--GAGTGTT-TG----GGTATACAT--GTTTCTTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out691   T-GTGTGTGAG---T--GTTTGC-GTC----TGTACTGTG--TTTCCTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out692   T-GTGTGTGAG---T--GCTTGC-GTC----TGTACCGTG--TTTCCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out693   --GTGTGTGAG---T--GCTTGC-GTC----TGTACTGTG--TTTTCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out694   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out695   T-GTGTGTGAG---T--GCTTGC-GTC----TGTATTGTG--TTTTCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out696   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out697   T-------GAG---C--GTTTGT-GTT----TGTACCGTA--TTTTCTTC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out698   T-GTGTGAAC-------GTCTCT-ATA----TGTACTGTG--TTTCTTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out699   T-GTTTGTGAG---C--GTCCGC-GTC----TGTATTGTG--TTTCTCA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out700   G-TATTGTAAG---C--GTCTGT-GTT----TGTAATGAG--TTTCGAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out701   ---GTTGTGAG---C--GTCTGC-GTT----TGTATTGTG--TTCTAAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out702   T-GTTTGTGAG---C--TTCTGC-AAT----CGTACTATG--TTTCCTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out703   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out704   G-TGTGTGAG-------GTCTGT-GTT----TG-----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out705   T---GCTCAG--T-T--TCTCA------------AAGGTG--CTCATAG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out706   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out707   ---TGTGAGCG-------TCTAC-ATT----TGTACTGTG--TTCTAAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out708   G-TGTGT-GAG---C--GTCTGT-GTT----TGTACCGTG--TTTCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out709   T-GTGAGCATC---G--GTGGGT-GTT----TGTACCGTG--TTTCCTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out710   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out711   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out712   ------GTGAG---T--GCTTGC-GTC----TGTACTGTG--TTTCCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out713   T-----GTGAGT-----GTCTGC-GTT----TGTACCGTG--TTTCCGGA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out714   --TGT---GAG---C--GTCTGC-GTT----TGTACTGTG--TTTCCAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out715   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out716   ---ATTATGAC---C--GTCTGC-GTC----TGTAGTGTT--TCTCAAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out717   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out718   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out719   -------TGAG---T--G-------------CTTGCTGTG--TTTCAAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out720   -----------------------A-TT----CATAAAGG---TG------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out721   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out722   C---ATTTGT--A-A--TGTGT------------T---CC--T-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out723   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out724   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out725   T-ACTTGTGAG---C--GTCTGT-GTC----TGTACCGTG--TTTCCTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out726   T-TTTTGTTAG---C--GTCTGA-ATC----TGTATTGTG--TTTCCTT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out727   T-GTGTGTAAG---T--GCTTGC-GTC----TGTACTGTG--TTTCCTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out728   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out729   T-GCTTGTGAG---C--GTCTGC-GTC----TGTGTTGTG--TTTCCTCG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out730   C-GTGTGTGAGT-----GGTTGC-ATC----TGTACCGTG--TTTAAAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out731   T-GTTTGTGAG---C--TTCTGC-GTT----TGTACTGTG--TTTTCTC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out732   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out733   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out734   T-GTGTGTGAG---T--GATTGC-GTA----TGTACTGTG--TTTTTCC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out735   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out736   T-GTTTGTGAG---C--GTTTGT-ATT----TGTACTGTG--TTTCCTCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out737   --ATTTGTGAG---C--ATT--T-GAG----TGTTGTGTT--TCCTCAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out738   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out739   --ATTAGTGTA---T--GCTCGTG-TT----TGTGAACGT----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out740   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out741   ----TCGTGAG---C--GTCTGC-GGT----TGTATTGTG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out742   --GTTTCTGAG---C--ATTTGTG-TC----TGT--AATG--TTTTTCTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out743   ---TGTGAGCG-------TTTGC-GTT----TGTACTGTG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out744   -------T------------------T----AGTACAATG--TCCAAAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out745   T-GTTTGTGAGC-----GTCTGC-GTC----TGTACCGTG--TTTCCTCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out746   T---GTGACC----G--TCCGT------------ACCATG--TTTCTCA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out747   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out748   ---GTTGTGAG---C--GTCTGC-GAT----TGTATTGTG--TTCCTGAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out749   T-GTGTGTGAGT-----GATTGC-ATC----TGTATTGTG--TTCCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out750   T-GTTTGTGAGC-----GTCTGC-GTC----TGTAGTGTG--TTTCCTCC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out751   ---TGTGAGCG-------TCCGG-ATT----TGTAATGTA--TTTTT---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out752   T-GTGTGTGAG---T--GCTTGC-GTC----TGTACTGTG--TTTCCTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out753   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out754   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out755   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out756   T-GTTTGTGAG---C--GTCTGC-GTT----TGTACTGTG--TTTCCTC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out757   G-TGTGTTGAA---C--GTCTGC-GTT----TGTATTCTG--ATTTAAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out758   ---------AG---C--GTTTGC-GTT----TGTACTGTG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out759   G-TGTTGTGAA---C--GTCTGC-GT------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out760   A-GGGTGTGCG---T--CTGTGC-GTT----CATAGGGGT--GAGTGTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out761   --A-----------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out762   T-------GGG---C--GTCTGT-GTT----TGTACCGTG--TCTCATAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out763   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out764   T-GTTTGTGAG---C--GTATGC-GTT----TGTACTGTG--TTCCT---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out765   --TAT---GAG---C--GTCTGC-GTT----TGTACCGTG--TTCCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out766   ---GTTGTGAG---C--GTCTGC-GTT----TGTACCGTG--TTCCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out767   T---GTACCA--------GCG-------------TCTGCG--TTCG----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out768   C-GTGTGTGAG---T--GCTTGC-GTC----TGTACCGTG--TTTCCTC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out769   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out770   --TTGTGAG-----C--GTCTAC-GTC----TGTACCGTG--TTTCCTC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out771   ---GTTGTGAG---C--GTTTGC-GTT----TGTACTGTG--TTTCTAT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out772   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out773   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out774   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out775   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out776   -----------------GTCTGT-GTG----TGTACTGTG--TTTAAAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out777   --------------------AGT-GTA----CGCGCTGTT--GTGA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out778   T-----GTGAGC-----GTCTGC-GTC----TGTACCGTG--TTTTCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out779   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out780   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out781   ---ATTGTGAG---C--TTCTGC-ATA----TGTACTG------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out782   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out783   G-TTTTGTGAG---C--GTCTAC-GTC----TGTACCGTG--TATCTTGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out784   ---GTTGTGAG---C--GTCTGC-GTT----TGTACTGTG--TTTCT---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out785   --TTG---------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out786   --TGTTGTGAA---C--ATCTGC-GTT----TGTTCTTTG--TTTTAAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out787   ---TTCGAGCG-------TTTGC-GTT----TGTACTCTA--TTTTAAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out788   G-T-----------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out789   T-GCATGACTG---C--GTTTGC-GTT----TGTGCCGTG--TTTCTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out790   -------C-GG---C--TG--CG-G-T----TGTACCGTC--TTTCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out791   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out792   T---GTAGTC--C-G--TTTG-------------TATTTT--TTTTTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out793   T-GCTTGTGAG---C--GTCTGC-GTC----TGTATTGTG--TTTCCTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out794   T-----GTAAGC-----GTCCGT-GTC----TGTACTGTG--TTTCCTCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out795   ---GTTGCGAG---C--GTCTGT-GTT----TGTACCATG--CTGCTCA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out796   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out797   T-------AAA---C--GTCTAC-TTG----TATATTGTG--TTTTGAAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out798   T-GTGTGTGAG---T--GCTTGC-GTC----TGTACCGTG--TTTCCTC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out799   T-------GAG---T--GTCCAC-GTC----TGTACCGTT--TTATCAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out800   A-TGTTGTGAG---C--GTCTGC-GTT----TGTACGGTG--TTTCTCA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out801   G-TGTTATGAG---T--GTCTGC-GTC----TGTATCATG--TTTGTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out802   AAGCGTCTA-----------T---ATT----TGTACTGTG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out803   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out804   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out805   ---TTTGTGTG---A--GAGTCT-GTT----TGTAACGTG--TTTCTTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out806   --TGT---GAG---C--GTCTGC-GTT----TGTACTGTG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out807   G-TGTTGTGAG---T--GTCTGC-ATT----TGTACCGTG--TTCTAAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out808   ---GGTGTGAG---C--GCCTAA-TGT----GTTCG----------AAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out809   --TGT---GAG---C--GTCTGC-GTT----TGTATTGTG--TTTCTTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out810   G-TGTTGTGAG---C--GTCTGT-ATT----TGTACTGTG--TTTCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out811   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out812   -------------------------------------GAG--C-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out813   T-GTTTGTAAGT-----ATCTAC-GTT----TGTACTGTA--TTTCCTCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out814   G---AGTGT-----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out815   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out816   T-------GAG---C--GTCTAT-GTA----TGTACTATG--TTTCTCGA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out817   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out818   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out819   -----TATGAT---T--GTCCAC-GTT----TGAACTATA--TTTCTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out820   --TTGTGAG-----C--GTCTGC-GTC----TGTACTGTG--TTTTCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out821   ---GTTGTGAA---C--GTCTGC-GTT----TGTATTGTG--TTTCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out822   T-AGTTGTAAG---C--GTCTGC-GTT----TGTACTGTT--TTTCTTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out823   T-ACTTGTGAG---C--GTCTGC-GTC----TGTACTGTG--TTTCCTC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out824   C-GTGTGTGCG---T--GTTTGC-GTC----TGTACTGTG--TTTCCTC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out825   T---TTATGA--G-C--ATTT----------------GCG--TTTATAC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out826   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out827   G-TGTTGTGAG---T--GTCTGT-GTT----TGTACTGTG--TTTCTCA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out828   T-GTGTGAG-----T--ACTTGT-GTC----TGTACT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out829   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out830   T-GCTTGTGAGC-----GTCTGC-TTC----TGTACTGTG--TTTCTACA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out831   --TGT---GAG---C--GTTTGC-GTT----TGTACTGTG--CTCTCAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out832   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out833   T-----GTGAGC-----GTCTAC-GTC----TGTATTATG--TGTCCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out834   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out835   ---TGTGAGCG-------TCTTC-GTT----TGTACTGTG--T-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out836   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out837   A-ATCTGAGCG-------TCTGC-GTT----TGTGCTATC--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out838   G-TGTTGTGAG---C--GTCTAT-GTT----TGTACGGTG--TTCTTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out839   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out840   T-----GTGAGT-----GTTTGC-GTC----TGTAGTGTG--TTTCCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out841   ---TACGAGCG-------TCTGC-GTT----TGTACTCTG--TTCCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out842   T-GTATGTGAG---T--GCTTGC-GTC----TGTACTGTG--TTTTTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out843   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out844   G-TGTTGTGAG---C--GTCTGC-GCT----TGTATTGTG--TTCTAAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out845   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out846   T-GTTTGTGAG---C--GTCTTC-GTT----TGTACCGTG--TTTCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out847   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out848   A-TGTTGTGAG---C--GCCTGC-GTT----TGTAATGTG--TTTCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out849   T-AATTGTGAG---C--GTGTGC-GTC----TGTACCGTG--TTTCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out850   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out851   T-TTGTGAACG---T----CGGC-ATC----TGTACTGTG--TTTTT---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out852   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out853   G-TGTTGTGAG---T--GTCTAC-GTT----TGTATTGTG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out854   C-TTGTGAGGT---C-----TGC-GTC----TGTATCGTG--TTTCCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out855   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out856   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out857   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out858   G-TGAGCGACT---G--CGTTGC-GTT----TGTATTGTG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out859   -------------------------------------------TCCC---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out860   T-GTTTCTGAA---C--GTCTCT-GTT----TGTATTATG--TTTCTTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out861   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out862   ----------A---T----ACGC-GTC----TGTACTGTG--TTTTCTCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out863   GAACGTC-------------TGT-CTT----TATACGTGT--TTCTAAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out864   G-TGTTGTGAG---C--GTCTGC-TTT----TGTATTGTG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out865   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out866   ----GGGTGAG---T--GTCTGCG-TC----TGTACTGTG--TTTCCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out867   ---CA-----------------------------C---------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out868   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out869   -----TGCGAG---G--GTCTGT-GTT----TGTACTATG--TTTCTCAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out870   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out871   T-GTGTGTGAG---T--GCTTGC-GTC----TATATTATG--TTTTCTC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out872   T-ACTTGTGAG---C--GCCTGC-GTC----TGTACTATG--TTAAAAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out873   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out874   G--TGTGCGTT---C--ATATAG-GTG----AGTGTACG-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out875   C-GTGTGAA-----------TG----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out876   C-GTGTGAGAG---T--GCTTGC-GTC----TGTACTGTG--TTTTCTC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out877   T-ACTTGTGAG---C--GTCTAC-GTC----TTTAGTGTG--TTTTCTC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out878   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out879   ----GTCT----C-C--TCTCT------------ACTGAG--TTTCTGA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out880   T-TATTGTGAG---C--GTCCCCA-TC----TCTACTGTG--TTTTTTAC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out881   ----TTGTGAG---C--GTCTAC-GTC----TGTATTGTG--TTTTCTCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out882   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out883   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out884   C-GTGTGTGAG---C--GTCTGC-TGT----TGTACCGTG--TTTTAAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out885   C-GTGTGTGAG---C--GTCTGC---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out886   ----------------------------------TGTGTG--TTTGTGA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out887   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out888   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out889   T-GTGTGTGAG---T--GCTTGC-GTC----CGTACTGTG--TTTTCTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out890   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out891   T-GTGTGTGAA---T--GATTGC-GTT----TGTACTATG--TTTTCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out892   --GGTTGCGAG---C--GTCTACG-TC----TGTACTGTG--TTTCTTCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out893   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out894   G-TGTTGTGAG---C--GTCTGT-GTT----TGTACTGTG--TTCTGAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out895   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out896   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out897   T-GTTTGTGAAA-----TTTTAT-TTC----TGTACCATA--TTTCTTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out898   T-GTTTGTGA----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out899   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out900   T-GCTTGTTGTGAGC--GTCTGC-GTT----TTGTATATA--CCATGTTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out901   T-GTT------T-----GTAAAC-GTC----TGTACTGTT--TTTCCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out902   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out903   T-------GAG---C--GTCTGC-ATT----TGTATTTTG--TTTGTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out904   ---GTTGTGAG---C--GTCTAC-GTT----TGTTATGTG--TTTCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out905   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out906   ---TGTGAGCG-------CTTGC-GTG----TGTACTGTG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out907   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out908   T-AAGTGTGAG---C--ATCTGT-TTT----TGTATTGTG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out909   GAGCGTTTG-----------C-T-GTT----TGTACCGGG--TTTAAAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out910   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out911   G---TTTGCATTT-T--TATAT------------ACTATA--TTTCCTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out912   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out913   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out914   G-TGTTATGAG---C--GTCTGC-GTG----TGTACTATG--TCTCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out915   ---TGTGAGTG-------TCTGC-GTT----TGTACTCTG--TTTCTTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out916   T-ACTTGTGAG---C--ATTTGC-GTT----TGTACTGTG--TTTAAAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out917   T-GTTTGTGAG---T--G-------TC----TGCACTGTG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out918   T-GTTTATGAA---C--ATCTCC-GTC----CGCATTGTC--TTTTAAGA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out919   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out920   T-GTCTGCGTG---T--TG---C-ATG----TGTACTAAT--TTTCT-C-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out921   T-GTTTGTGAG---C--GTTTAT-GTT----TGTACTATA--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out922   -----TGTGAG---C--GTCTGC---------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out923   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out924   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out925   ---TGTGAGCG-------TCTGC-GTT----TGCATTGTG--TTTCTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out926   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out927   T-ACTTGTGAG---G--GTCTGT-GTC----TGGACTGTG--TTTTCTT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out928   T-GTTTGTGAG---C--GTTTGC-ATT----TGTGTTGTG--TTTTT---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out929   -------------------------TA----TTACCTGAA--TTATTC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out930   T-GTGTGTGAG---T--GCTTGC-GTC----TGTACTGTG--TTTTCTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out931   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out932   T-TGTTAG------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out933   T-CTGTGTGAG---T--GCTTGC-GTC----TGTACTGTG--TTTCCTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out934   -----TGTAAG---C--GTTTGC-GTT----TGTACCGTA--TTTCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out935   --TGT---GAG---C--GTCTGC-GTT----TGTACTGTA--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out936   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out937   --TGT---GAG---C--GTCTGC-GTT----TTTATTGTG--TTTCTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out938   C---GTCTGT--G-T--TGTAA------------TCGGTG--ATTTTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out939   ---TGTGCACG-------TTCTC-GTT----TGTACTGTG--TTTTTTTT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out940   ---TATGTG-----T--GTCTGC-GGC----TGTACTGTG--TTTCCTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out941   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out942   -------TGAG---C--GTCTGC-GCT----TTTACTGTG--T-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out943   ---TGTGAGGA-------TCTGT-GTT----TGTACCGTG--TTTCTA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out944   --GTTTGTGAG---C--GTCT-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out945   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out946   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out947   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out948   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out949   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out950   ---GTTGTG-----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out951   T-ATTTGTGAG---C--CTCTAC-ATT----TGTCCCGTG--TTTATATT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out952   G-TGTTGTGAG---C--GTATGC-ATT----TGTACTGTG--TTTATCT-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out953   -------G-CA---C--GT--C----T----TGGAGCGTC--TGTGTT--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out954   T-TTATGAGCG---T----CTGA-GTT----TATACTGTG--TTTTCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out955   T-GTTTGTGAG---C--GTTTG----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out956   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out957   T---TTGTGA--G-C--ATCT-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out958   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out959   T-------GAG---C--GTCTGC-GTT----TGTACTGTG--TTTCTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out960   ---AATGAGCG-------TCTGC-GTT----TGTATTGTG--TTTGTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out961   ---TGTGTGCG---T----ATGC-GTT----TCTA---------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out962   C-GTGTGCGAG---C--GTCGAC-TGC----GTTTG--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out963   T-GTTTGTGAG---C--GTCTGC-ATT----TGTACTGTG--TTTCCTC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out964   ---TGTGAGCG-------TCTGT-TGT----TGTACTGTG--TTTCTA--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out965   T-GCGTGCGAG---T--GCTTGC-AT------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out966   T--GTGCGTG----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out967   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out968   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out969   ---TGTGAGCG-------TTTGC-GTT----TGTACAATG--TTTCTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out970   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out971   ---GTTGTGAG---C--GTTTGC-GTT----TATACTGAG--TTTCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out972   T-GTTTTGAAA---C--GTTTGC-GTC----TGTACTGTG--TTTCT---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out973   G-TGTTGTGAG---C--ATCTTC-GTT----TGTACTGTG--CTTTAAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out974   ---GTTATGAG---G--GTCTCG-T-T----TGTACTGTG--TTTTAAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out975   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out976   ----GTGAGCG-------TCTGC-ATT----TCTCAATTT--TTTTTATC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out977   T-GCTTGCGAG---C--GTCTGG-ATT----TATACCGTG--TTTCAAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out978   T-GTGTGTGAG---T--GCTTAT-GTG----TGTACTGTG--TTTCCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out979   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out980   ------TGTAG---T--GCTTGT-CTC----TGTACTGTG--TTTCCTC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out981   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out982   --AGAAAA------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out983   G-TGTTGTGAG---C--GTCTGC-GGT----TGTATTGTG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out984   T-GTTTGTG-----------AGC-GTT-----GTACCGTG--TTTCCAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out985   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out986   T-ACTTGTGAG---C--GTCTGA-GTC----TGTAACGTG--TTTCCTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out987   --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out988   G-TGTGT-GAA---C--ATCTGT-GTT----TGTACCGTG--TTTCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out989   T-GCTTGTGAGG-----GTCTGC-ATC----TGTACTGTG--TTTCTTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out990   G-TGTTGCGAG---C--GTCTGC-CTT----TGTGTTGTG--T-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out991   T-ATTTGTGAA---C--TTCTGT-GTC----TGTACT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out992   --GTGTGTGAG---T--GATTGCG-TC----TATACTGTG--TTTTCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out993   T-TTGTGAG-----C--GTCTGC-GTC----TGTAATCTG--TTTCCTC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out994   T-GCTTGTGAG---C--GTCTGC-GTC----TGTACCGTG--TTTCCTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out995   -------TGAGT-----GTCTGT-GTC----TGTACCGTG--TTTCCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out996   T-GGTTGTGAG---C--GTCTGC-GTC----TGTAGTGTG--TTTACTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out997   C-------GAG---C--ATCTGC-GTT----CGTACTGCG--TTTAAAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out998   G-TGTTGTGAG---C--GTCTGC-GTT----TGTACTGTG--TTTCTCA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out999   T-----GTGAGC-----GTATG-----------TACTGTG--TTTTCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1000  G-TGTTGTGAG---T--GTCTGT-GTT----TGTACCGTG--TTCCTCA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1001  --------------------GGG-GTG----AGTGTA-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1002  TAGCGTTTC-----------C---GTT----TGTATTGTG--TTTCTTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1003  TGAAGTC-------------TGC-ATT----TGTACTGTG--TTTTTTCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1004  ----------------------------------TCTCG-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1005  T-GTTTGTGAG---C--GTCTTC-GTT----TGTATTGTG--TTTATCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1006  T-GTGTTTCAA---G--TTCATA-TTG----TGTTCC-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1007  G-TGTTGTGAG---C--GTCTGC-GCT----TGTACTGTG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1008  T-GTTTGTGAA---C--GTCTGC-GTC----CGTATTATG--TTTTCTTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1009  --------------------G-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1010  ---TGTGTGAT---C--GTCTGC-GTT----TGTATTGTG--TTTCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1011  G-TTGTGAGCG-------TCTGC-GTT----TGTACTGTG--TTCCTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1012  T-GTTTG-----------TGAGC-GCA----TGTACCGTA--TTTTTTCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1013  T-GTGCGTGAGT-----GATTGC-GTC----TGTACCGTG--TTTTTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1014  T-GTTTGTGAG---C--GTCGGC-GTT----TGTATCTTG--TTTCCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1015  T-------GAC---C--ATCTGG-GTT----TGTACCGTG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1016  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1017  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1018  --AGGGATGGA---T--GTGCGTA-TG----TGTT---------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1019  ---GTTGTGAG---C--ATCTGC-GTT----TGTACTGTG--TTAAAAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1020  ---TGTGAAT--------------GTT----TGTAATGTG--TTTAA---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1021  C---TTGTGA--G-C--ATAC----------------ACG--TCT-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1022  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1023  T-GTGTGTGAG---C--GTTTGT-GTC----TATACTGTG--TTTTCTTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1024  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1025  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1026  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1027  GAGCGTTTG-----------T---GTT----TTTGTACCG--TGTTTTTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1028  T-GTTTGTGAG---C--GGCTAC-GTT----TGTACTGTG--TTTCCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1029  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1030  ---TGTGAGAG-------TCTAC-GTT----TGCACTGTG--TTTATTTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1031  T-TTGTACTGT---G--T-------------------------TTCATC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1032  T-GTTTGTGAG---C--GTCCGC-GTC----TCTATTGTG--TTTTCTC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1033  G-TGTTGTGAG---C--TTCTGC-GTT----TGTACTGTG--TTCTAAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1034  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1035  G-TGTTGTGAG---C--GTCTGC-GTT----TGTACTGTG--TTCCTCA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1036  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1037  T-GTGTGAGAG---T--GCTTGC-GTC----CGTACTGTG--TTTCCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1038  T----TGAA-----T--GCCTAC-GTT----TGT----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1039  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1040  T-GT--GTAGGT-----GCTTGC-GTC----TGTACTGTG--TTTACTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1041  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1042  T-----GTGATC-----GAAGGC-GTT----TGTACAGTG--TTTCCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1043  T-GTTTGCGAG---C--GTCTGT-GTT----TGT----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1044  G-TGTTGTGAG---C--GTCTGC-GTT----TGTACTGTG--TTCC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1045  T-GTTTGTGAG---C--GTCTGT-GTT----TGTACTGTG--TTTCTTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1046  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1047  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1048  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1049  G-TGTTGTGAT---C--GTCTGC-GTT----TGTACTGCG--TTTTTCAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1050  ---GTTGTGAA---C--GTC--T-GTT----TGTACTGTA--GTCTCAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1051  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1052  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1053  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1054  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1055  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1056  ---GTTGTGAG---C--GTCTGCGTTGCGTTTGTACCGTG--TTTAAAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1057  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1058  T-GTTTGTGAGC-----GACTGA-TTT----TGTGTTGTG--CTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1059  T---GTATGT--------GCG-------------TG--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1060  T-GTTTGTG---------AACAT-TTG----TGTGTTGTG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1061  ----------------------------------ACTGTG--TTTTT---
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1062  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1063  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1064  --TGTTATGAG---C--GCGTGC-GTC----TGTACTTTG--TTTCATA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1065  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1066  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1067  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1068  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1069  G-TGTTGTGAG---C--GTCTGC-GTT----TGTGCCGTG--TTTCTCA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1070  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1071  T-GTGTGTGATT-----GCTTGC-GTC----TGTACTGTG--TTTTCTCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1072  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1073  T-GTGTGTGAGT-----GCTTGC-GTC----TGTACCGTG--TTTTCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1074  --GTTTGTGAG---C--ATCC-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1075  GAGCGTCTGCG---T--GACTGC-GTT----TGTACTGTA--TTTCTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1076  T-----GTGAGC-----GTCGGC-GTC----TGTACTGTG--TTTACTCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1077  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1078  T-ACTTGTGAG---C--GTCAGC-GTC----TTTACTGTG--TTTACTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1079  -----------------------------------TGGTG--TTTCTTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1080  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1081  -----------------------------------TGGTG--ATGCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1082  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1083  T-GTCTGTTAG---C--ATCTGC-GTT----TGTACTGTG--TTTCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1084  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1085  G-TGTTGTGAA---C--GTGTGC-GTT----TGTATTGTG--TTTCTAAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1086  T-------GAC---C--ATTTGT-ATT----TATACTGTG--TTTCCC--
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1087  T-ATGAATGAG---T--GTACAT-GTT----TGTACTGTG--TTTTTTCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1088  T-------GAG---C--GTCTCT-GTT----TGTACAATG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1089  -------CG---------CACGT-GTT----TGTACTATC--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1090  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1091  ----TTGTGTG---C--GTATGC-GTT----T------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1092  ---TGTGAGTT-------TCTCC-GTT----CGTACCGTG--TTTTTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1093  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1094  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1095  T-ACTTGTGATT-----GTCTGC-GTC----TGTGTTTCT--TAAAAAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1096  --------------------TGC-ATC----TGTACTGTG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1097  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1098  T-ACTTGTGAG---C--GTCTGC-GTC----TGTACTGCG--CTTCCTC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1099  ---TGTGAGCG-------TCTGC-GT------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1100  ---------AG---C--GTCTGC-ATT----TGTACTGTG--TTTCTGAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1101  T-TCATATTAA---C-------G-AAT----TGTACTGTG--TTTCCTC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1102  ---TGTGAGCG-------TCTGA-GTT----TGTACCGTG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1103  --TGT---GAG---C--GTCTGC-GTT----TGTACTATG--TT------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1104  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1105  CTGCTTCCG-----------TGT-GTT----TGTACCGTG--CTTCTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1106  G-TGTTGTGAT---C--GTCTGC-GTT----TGTACCGTG--TTTTTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1107  T-------CAG---C--ATCTAC-GTT----TCTATTGTG--TGTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1108  --TTGTGAG-----C--GTCTGC-GTC----TGTACCGTG--TTAAAAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1109  T-GTATGTTAA---T--GATTGC-GTC----TGTACTGTG--TTTCCTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1110  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1111  -------------------------------------GTG--TTTCCTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1112  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1113  A-TGTTGTGAG---C--GTCTAC-GTT----TGTACTGTG--TTCCTCA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1114  T-TGTTGTGAG---C--GTTTGC-GTT----TGTACCGT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1115  --TGT---GAG---C--GTTTGA-GTT----TGTACCGT-----------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1116  ---CGAGAGCG---T----TTGC-GTT----TGTATTGTG--TTCCTTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1117  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1118  ---GTTCTGAG---C--GTCTGC-GGT----TGTACCGTG--TTCCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1119  T-GTTTGTGAG---T--GTCTGC-ATT----TGTCCTGTG--TTTCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1120  T-ATTTGTGAG---C--GCCTGC-GCC----TGTACTGTG--TTTCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1121  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1122  --GCTTGTGAG---C--GTCTGA-GTC----TGTACTGTG--TTTCCTCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1123  G-TGTTGTGAG---C--GTCTGC-GTT----TGTATTGTG--TTTCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1124  T-ACTTGTGGG---C--GTCTGC-TTA----TGTATTGTG--TTTACTC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1125  T-TTGTGAGCG---T----CTGC-GTC----TGTAGTGTG--TTTCCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1126  T-GTTTGTGAG---C--ATTCGT-T-T----TTTACTGTG--TTCTCTC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1127  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1128  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1129  T-GTTTCTAAA---C--ATCTGC-ATC----TGCACTCTC--TTTTCTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1130  ------------------------------------------TTCA----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1131  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1132  ---------------------------------TAGTGTG--TTCTAAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1133  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1134  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1135  G-TGTTGTGAG---C--GTCTGT-GTT----TGTACTATG--TTTCTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1136  T-----GTGAGC-----GTCTGC-GTC----TGTACTGTG--TTTCCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1137  T-GCTTCTGAC---C--G---CC-GTT----TGTACTGTA--TTTTTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1138  T-ACTTGTGAG---T--GTCTGC-GTC----TTTACTGTC--TTTATTG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1139  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1140  --G-T---GAG---C--GTCTGC-GTT----TGTACTATG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1141  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1142  T-GTGTATGGG---T--GCTTGT-AAC----GTGT--------TTCCTGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1143  C-GTGTGTGAC---C--GTATGC-GTT----TGTAGTACT--GTGTTTCT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1144  A---TTGCA-----------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1145  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1146  ---TGTGCGCG---T------GT-GTG----AGTACCGTG--TTTCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1147  A-TGTTGTGAG---C--GTCCGC-GTT----TGTACTATA--TTTCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1148  C-GTGTGTGTG---T--GCTTGC-GTC----TGTACTGTG--TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1149  G-TGTTGTGAG---C--GTCTGC-GTT----TGTGCTGTG--TTCTCAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1150  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1151  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1152  ---TGTGAGCT-------TTTGC-GTT----TCTGGTGTG--TTTATAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1153  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1154  -----TGTGAG---C--GTCTAC-GTT----TATACTGTG--TTCAAAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1155  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1156  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1157  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1158  --GTAGATCTG---A--GTGTACG-G------GTACCGTG--TT------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1159  -----------T-----GTGCGT-ACT----AGTACTGTG--TTTCCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1160  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1161  T-ACTTGTGAG---C--GTCTGC-GTC----TGTGTTGTG--AAAAAAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1162  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1163  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1164  T-GTGTGTGAG---T--GTTTGC-ATC----TGTACCGTG--TTTCCTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1165  T-GTGTGTGAAT-----GATTGC-GTA----TGTACTGTA--TTTCCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1166  T-GGTTGTGAG---G--GTCTGA-GTC----TGAGTCTGT--ACTGAAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1167  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1168  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1169  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1170  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1171  --ATGGATGAA---T--GTACGCA-TG----TATTATG------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1172  ---TGTGAGCG-------TCTGC-GTT----TGTACTGTG--TTCCTAGA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1173  --TGT---GAG---C--GTTTGC-GTT----TGTACTGTG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1174  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1175  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1176  ----GTGAGCG-------TCTG---TT----TGTACTGTG--CTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1177  ------------------------TTT-----TTAACGTG--TTTCCCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1178  G-TGTTGTGAG---C--GTCTGC-GTT----TGTACTGTG--TTTCCAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1179  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1180  ---TGTGAGCG-------TCTGC-GTT----TGTACTTTG--TTTTAAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1181  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1182  G-TGCTGTGAG---C--GTC--T-GTT----TGTACTGTG--TTTATTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1183  T-GTTTATGAG---T--GCTTGC-GTC----TGTACTGTG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1184  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1185  T-GTTTGTAAG---C--GTCTAC-ATT----TGTA---------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1186  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1187  ---AGTGTATG---C--TTCTAC-GTT----TGTATTGTG--TTCCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1188  ---TGTGGGCG-------TCTGG-GTT----TGTTCTGAG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1189  GAGTGTCTC-----------C---TTT----TGTACTAGG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1190  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1191  GAGCGTTTA-----------C---GTT----TGTACTGTG--TTTCTCGA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1192  T-ATTTGTGAG---C--GTCTGC-GTC----TGTACTGTG--TTTTCTCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1193  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1194  G-TGTTGTGAG---C--GTCTGC-GCT----TGT----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1195  ---------------------------------TTTTGTG--TTTTCTC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1196  --TTGTGAGCG-------TCTGC-TTT----TGTACTGTG--CTTTAAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1197  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1198  T---TTGTGA--G-C--ATCT-----------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1199  ---ATTGTGAG---C--GTCTGC-ATT----TGTACTGTG--TT------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1200  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1201  G-TGTTGTGAG---C--GTCTGC-GTT----TGTACCGTG--TTTTTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1202  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1203  --GTTTGTGAG---C--ATCTGCG-TT----TGTATTGTG--TTTTCTGG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1204  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1205  ---TGTGAGCG---T----CTGC-GTT----TGTACTGTG--TTCTTATA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1206  --AGGGGTGAG---T--GTTCACG-C------GTGTT-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1207  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1208  T-------GTG---C--GTCTGC-ATT----TGTACTGTG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1209  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1210  C-GCATGTGAG---C--GTCCGT-GTT----TGAATTGTG--TTTCTTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1211  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1212  C-GTGTGTGAG---C--GACTGC-ATT----TACACTGTG--TTTCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1213  ---TGTGTGAG---C--GTCTGC-GTT----TGTACTGTG--TTTCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1214  GAGCGTC-------------TGC-GTT----TCTACCGTG--TTTCTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1215  T-------TGA---T--GTCTGC-ATC----TGTACCGTG--TTTTCTCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1216  T-ACTTGTGAGC-----GTCTGC-GTC----TGTATTTTG--TTTCCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1217  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1218  G---AT---TTGA-A--CG-------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1219  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1220  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1221  ---TTGTACTA---T--GTTCTA-A-A----AAAAA--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1222  ----GTGAGAG---C--GCTTGC-ATC----TATAGTGTG--TTTCCTCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1223  T-GTTTGTGAG---C--GTATGC-GTC----CGTACTGTG--TTTCTTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1224  T-GCTTGTGAG---C--GTCTGT-GTC----TGTCCTGTG--TTTCCTC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1225  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1226  T-GTGTGTGAG---T--GCTTGT-GTC----TGTACTGTG--TTTCCTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1227  T-GTTTG-----------TTGTC-GTC----TGTATTGTG--TTTCTTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1228  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1229  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1230  --------AAC---G--GTCTAA-GCC----TGTACTGTG--TTTCCTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1231  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1232  G-TGTTGTGAG---C--GTCTGC-GTT----TGTACCATG--TTCTAAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1233  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1234  C-GTGTTTATA---A--GAGTGC-GTT----TGTAC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1235  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1236  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1237  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1238  T-------GAG---C--GTCTGT-TTT----ATAGTTTAT--ACCTAAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1239  --TTGTGAG-----C--GTCTGC-GTC----TGTACTGTG--TTTCCTCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1240  ---CGTC-------------TGC-ATT----TGTATTGTT--TTCTTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1241  -----TGTCAG---C--ATCTGC-GTT----TGTACTGTG--TTT-----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1242  G-TGTTGTGAG---C--GTCTGC-GTT----TGTACTGTG--TTCCTCA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1243  T-GTGTGTGAG---T--GCTTGC-GTC----TGTACTGTG--TTTTCTC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1244  ---GTCCGAG----C--GTCTGG-GTT----TGTACCGTC--TTTCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1245  --CTATA------------------TT----TGCACTGTG--TGTTTTCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1246  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1247  ------------------TCTGC-GTC----TGCACTGTG--TTTTCTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1248  --------------C--GTACGT-GAA----CTTAACGTG--TTTTTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1249  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1250  --TTGTGAG-----C--GTCTGC-GTC----TGTACTGTG--TTTTCTCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1251  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1252  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1253  ---CGTATGAG---G--GTCTAC-GTT----TATCTTGTG--TTTCTCA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1254  ---CGTATGAG---G--GTCTAC-GTT----TATCTTGTG--TTTCTCA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1255  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1256  A-TGTTGTGAA---C--GTCTGC-GTT----TGTACCGTG--TTTCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1257  T-------GAG---C--GTCTTC-GTT----TGTACTGTG--TTTCTCAG
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1258  G-TGTTATGAC---C--GTATGC-GTT----TGTAATGTA--TTTCTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1259  T-GTTTGTGAG---C--GTCTGC-GTT----TGTACTGGG--TTTCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1260  --AA----------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1261  ---ATTGTGAG---C--GTCTTG--TT----TGTACTGTG--TTCCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1262  ------------------CTCG------------GATGCG--TTCATAG-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1263  ----------GT-----GATTGC--GT----TGTACTGTG--TTTCCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1264  ---TGTGCGCG---T----ATGC-GTT----T------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1265  G-TGTTGTTTG---C--GTCTGC-GTT----TGTAATGTG--TTCCTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1266  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1267  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1268  T-GTGTGTGAG---T--TCTTGC-ATC----TGTACTGTG--TTTCCTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1269  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1270  A-TGTTGTGAG---C--GTCTGC-GTT----TGTACTGTG--TTGCTCA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1271  C-GTTTGTAAG---C--GTCTTC-GTC----TGTACTGTG--TTTCCTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1272  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1273  T-GTTTGTG-----------AGC-GGC----TGTATAGTG--TTTAAAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1274  ---CTTTTGTG---A--GC-------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1275  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1276  G-TGTTGTGAG---C--GTGTAC-GTT----TGTATTGTG--TTTCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1277  T-------G---------TTTGC-GTC----TGTGCTTGT--TTCCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1278  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1279  --GTGCG-------C--GTCTGT-GTT----TGTATTGTG--TTTCCTCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1280  T-------AAC---C--GTTTGT-GTT----TCTAGTATG--TTTCCCCC
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1281  T-GTTCATGAG---C--GTCTAC-GTT----TGTATTGTG--TTTCTTCA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1282  ------GAGCG-------TCTGC-GTT----TGTACCGTG--T-------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1283  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1284  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1285  T-GCTTGTGAC---C--ATCTGC-GTC----CGTACTGTA--TTTCCTA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1286  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1287  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1288  ---GTTGTGAG---C--GCTGCG-T-T----TGTACC-AT--GTTTCTC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1289  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1290  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1291  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1292  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1293  G-TTGTGAGCG-------TCTGT-GTT----TGTACTGTG--TTTCTCAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1294  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1295  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1296  ---GTTGTGAG---C--CTCTGC-GTT----TGTACCGTA--TTCCTCA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1297  ---GTTATGTG---C--ATTTGC-A-T----TTGTACTAT--GTTTATC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1298  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1299  T-----GTCAGC-----GTTTGC-GTC----TGTACCGTG--TTTTCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1300  ---TGTGAGCG-------TCTGT-GGT----TGTACTGTG--TTCCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1301  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1302  T-TGGTGAACG---T----CTGC-AAT----TGTACCGTG--TTTGCTAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1303  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1304  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1305  T-GTGAGTGAT---T--GC-----GTT----TGTACCGTG--TTTCCTC-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1306  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1307  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1308  ---GTCGTAAG---C--GTCTAC-GTT----TGTACTGTG--TTTCTAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1309  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1310  T-ATTTATGAG---C--GACTGT-GTT----TGTATTGGG--TTTCTAAT
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1311  --GTTTGTGAG---C--ATC--T-GCG----GTGTGTGTT--TTTAGAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1312  -----TGTGAG---C--GTATGC-GT------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1313  T-GTTTGTGAG---T--GTCTAC-TTT----TGTATTGTG--TTTC----
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1314  A-TGTTGGGAG---C--GTCTGC-GAT----TGTAC--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1315  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1316  ---GTTGTGAG---C--ATGTGC-GTT----TGTAGTGTG--TTCCAAA-
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1317  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1318  GAGTGTC-------------TGC-ATT----TGTATCGTG--TGTTTCTA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1319  T-GAG------T-----ACTTGC-GTC----TGTACTGCG--TTTCTAAA
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1320  --------------------------------------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1321  T-----GTGAGC-----GTCTGC-GTC----CGTACTGTG--TTTCCGAA

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GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out3     ---------------------
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GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out7     ---------------------
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GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out16    ---------------------
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GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out18    ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out19    ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out20    ---------------------
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GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out28    ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out29    AAAAAAAA-------------
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GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out33    ---------------------
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GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out39    ATAAAAA--------------
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GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out42    ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out43    ---------------------
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GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out65    AAAAAGA--------------
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GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out68    ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out69    ---------------------
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GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out73    ---------------------
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GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out83    ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out84    ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out85    ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out86    ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out87    ---------------------
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GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out90    ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out91    -TTCTAAAAAGAAAA------
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GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out93    ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out94    ---------------------
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GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out96    ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out97    GCGTGTGCATCTG--------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out98    ---------------------
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GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out100   ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out101   AAAA-----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out102   AAAAAAAA-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out103   AAAAA----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out104   ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out105   AAAAA----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out106   ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out107   ---------------------
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GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out109   ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out110   AAAAAAA--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out111   AAACAAA--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out112   AAAAAAA--------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out113   ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out114   ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out115   AAAA-----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out116   ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out117   AAAATAAA-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out118   ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out119   AAAAAAAA-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out120   ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out121   ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out122   ---------------------
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GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out127   AAAAAAAA-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out128   AAAAAAAA-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out129   ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out130   ---------------------
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GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1241  ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1242  AAAAAAAA-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1243  AAAAAAAAA------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1244  AAAAATAA-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1245  AAAAAAAA-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1246  ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1247  AAAAACAA-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1248  AAAAA----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1249  ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1250  AAAAAAGA-------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1251  ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1252  ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1253  AAAA-----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1254  AAAA-----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1255  ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1256  AAAA-----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1257  AATAAAA--------------
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GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1259  AAAAAA---------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1260  ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1261  A--------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1262  ---------------------
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GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1264  ---------------------
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GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1266  ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1267  ---------------------
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GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1272  ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1273  AGA------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1274  ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1275  ---------------------
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GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1279  AAAAAAGA-------------
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GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1283  ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1284  ---------------------
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GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1286  ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1287  ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1288  GAAGAAAAA------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1289  ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1290  ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1291  ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1292  ---------------------
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GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1294  ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1295  ---------------------
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GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1298  ---------------------
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GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1301  ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1302  GAGAA----------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1303  ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1304  ---------------------
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GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1306  ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1307  ---------------------
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GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1309  ---------------------
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GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1312  ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1313  ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1314  ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1315  ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1316  GAAAAA---------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1317  ---------------------
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GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1320  ---------------------
GCA_000005505.4_Brachypodium_distachyon_v3.0_rm.out1321  AAAAAAA--------------
//
