# STOCKHOLM 1.0

#=GS            GCA_000004655.2_ASM465v1_rm.out79 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out1018 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out1031 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out2465 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out2500 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out3484 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out3485 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out4118 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out4663 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out4993 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out5800 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out5801 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out5833 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out7343 DE    SINE
#=GS   GCA_000576065.1_Oryza_nivara_v1.0_rm.out74 DE    SINE
#=GS  GCA_000576065.1_Oryza_nivara_v1.0_rm.out146 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out1879 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out2178 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out2192 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out3594 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out4445 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out5007 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out5510 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out6583 DE    SINE

GCA_000004655.2_ASM465v1_rm.out79             --GAGAACCGTGCCTAGCTCGGTTGGTATGGGTTGATTGCTTTCGCC---
GCA_000004655.2_ASM465v1_rm.out1018           -----------------------------GGGTTGGTTGCTTTTTCCC--
GCA_000004655.2_ASM465v1_rm.out1031           --------------------------------------------------
GCA_000004655.2_ASM465v1_rm.out2465           --GAGAACCATGCATAACTCGGTTGGCAAGGGTTGGTGGCGTTACCTCGT
GCA_000004655.2_ASM465v1_rm.out2500           --------------------------------------------------
GCA_000004655.2_ASM465v1_rm.out3484           --GAGAACCATGACTTGCTCGGTTGGCAATGGTTTGGTGACTTTCACTA-
GCA_000004655.2_ASM465v1_rm.out3485           -------CCATGACTTGCTCGGTTGGCAATGGTTTGGTGACTTTCACTA-
GCA_000004655.2_ASM465v1_rm.out4118           GAGAACCATATGCCTAGCTCGGTCGATACGACCAGTTG-ATTTCGCT---
GCA_000004655.2_ASM465v1_rm.out4663           --GAGAACTGTGCCTAGCTCGGTTGGTATGGGTTGATTGCTTTCACC---
GCA_000004655.2_ASM465v1_rm.out4993           --GAGAACCGTGCCTAACTCGGTTGGTATGGGTTGATTGCTTTCACC---
GCA_000004655.2_ASM465v1_rm.out5800           ----------------------TTGGTACGGGTTGATTGCTTTCGTC---
GCA_000004655.2_ASM465v1_rm.out5801           ----------------------TTGATACGGGTTGATTGCTTTCGTC---
GCA_000004655.2_ASM465v1_rm.out5833           --------------------------TATGGGTCGATTGCTTTCATCTTA
GCA_000004655.2_ASM465v1_rm.out7343           --------------------------------------------------
GCA_000576065.1_Oryza_nivara_v1.0_rm.out74    --GAGAACCGTGCCTAGCTCGGTTGGTATGGGTTGATTGCTTTCGCC---
GCA_000576065.1_Oryza_nivara_v1.0_rm.out146   --GAGAACCATGCATAACTCGGTTGGCAAGGGTTGGTGGCGTTACCTCGT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out1879  --GAGAACTGTGCCTAGATCGGTTGGTATGGGTTGATTGCTTTCACC---
GCA_000576065.1_Oryza_nivara_v1.0_rm.out2178  -----------------TCGATTTGTCAAGGGTTGGTTGCTTTTTCCC--
GCA_000576065.1_Oryza_nivara_v1.0_rm.out2192  --------------------------------------------------
GCA_000576065.1_Oryza_nivara_v1.0_rm.out3594  --------------------------------------------------
GCA_000576065.1_Oryza_nivara_v1.0_rm.out4445  -------CCATGACTTGCTCGGTTGGCAATGGTTTGGTGACTTTCACTA-
GCA_000576065.1_Oryza_nivara_v1.0_rm.out5007  GAGAACCATATGCCTAGCTCGGTCGATACGACCAGTTG-ATTTCGCT---
GCA_000576065.1_Oryza_nivara_v1.0_rm.out5510  --GAGAACTGTGCCTAGCTCGGTTGGTATGGTTTGATTGCTTTCACC---
GCA_000576065.1_Oryza_nivara_v1.0_rm.out6583  --------------------------------------------------

GCA_000004655.2_ASM465v1_rm.out79             ---CAGCAGACCCAGGTTTGACCTCTTGACCTGCTCATATTCCACCTGGA
GCA_000004655.2_ASM465v1_rm.out1018           ---TATAGAACCAGCATCGAAGTCTCGAAC-TGCTCATATTTTACCTAGA
GCA_000004655.2_ASM465v1_rm.out1031           -----------CCAGATTCGATCTCTCAACCTGCTCATATTTCACCTGGA
GCA_000004655.2_ASM465v1_rm.out2465           AGACATATGTT----TCGAAGTCTTCAAAAATGCTCATATTTCACCT---
GCA_000004655.2_ASM465v1_rm.out2500           --------------------------------------------------
GCA_000004655.2_ASM465v1_rm.out3484           ---TGTAGACGCATGTTTCATATTTCAGACTTGATTATATTTCCCTCAGA
GCA_000004655.2_ASM465v1_rm.out3485           ---TGTAGACGCATGTTTCATATTTCAGACTTGATTATATTTCCCTCAGA
GCA_000004655.2_ASM465v1_rm.out4118           ----------------TTCACCTAGCAGATCCAGGTTCAATCGACCTATA
GCA_000004655.2_ASM465v1_rm.out4663           ---CAGCAGACCCAGGTTCAACCCCTCGACCTGCTCATATTCCACCTGGA
GCA_000004655.2_ASM465v1_rm.out4993           ---CAGCGGACCCAGTTTCGACCTCTCAACCTGCTCATATTTCACCTAGA
GCA_000004655.2_ASM465v1_rm.out5800           ---CAGCAAATCCAGGTTCGACCTCTTAACCTGCTCATATTCCATCTGGA
GCA_000004655.2_ASM465v1_rm.out5801           ---CAGCAAATCCAGGTCG---ACCTCAACCTGCTCATATTCCATCTGGA
GCA_000004655.2_ASM465v1_rm.out5833           GACCCAGGTAACCTGGTTGGACCTTTTAACCTGCTTATATTTCACC----
GCA_000004655.2_ASM465v1_rm.out7343           ------CAGACCCAGGTTTGATCTCTCGACCTGCTCATATTCCACCTAAA
GCA_000576065.1_Oryza_nivara_v1.0_rm.out74    ---CAGCAGACCCAGGTTTAACCTCTCGACCTGCTCATATTCCACCTGGA
GCA_000576065.1_Oryza_nivara_v1.0_rm.out146   AGACACATGTT----TCGAAGTCTTCAAAAATGCTCATATTTCACCT---
GCA_000576065.1_Oryza_nivara_v1.0_rm.out1879  ---CAGCAGACCTAGGTTTGACCTCTCGACCCGCTCATATTCCACCTGGA
GCA_000576065.1_Oryza_nivara_v1.0_rm.out2178  ---TATAGAACCAGCATCGAAGTCTCGAACTTGCTCATATTTTACCTGGA
GCA_000576065.1_Oryza_nivara_v1.0_rm.out2192  ----------------TTCGATCTCTCAACCTGCTCATATTCCACCTGGA
GCA_000576065.1_Oryza_nivara_v1.0_rm.out3594  --------------------------------------------------
GCA_000576065.1_Oryza_nivara_v1.0_rm.out4445  ---TGTAGACGCATGTTTCATATTTCAGACTTGATTATATTTCCCTCAGA
GCA_000576065.1_Oryza_nivara_v1.0_rm.out5007  ----------------TTCACCTAGCAGATCCAGGTTCAATCGACCTATA
GCA_000576065.1_Oryza_nivara_v1.0_rm.out5510  ---CAGCAGACCCAGGTTCGACCCCTCGACCTGCTCATATTCCACCTGGA
GCA_000576065.1_Oryza_nivara_v1.0_rm.out6583  ------------CCAGCAAATCCAGGTTCGACCTTCATATTCCATCTGGA

GCA_000004655.2_ASM465v1_rm.out79             TTAAAG-AAGGATTG--GAAAAA--TATGTGGCTTCTCGTATCTTAATAC
GCA_000004655.2_ASM465v1_rm.out1018           TTAAATGAAAGGTTTGAAAATATGTGGCTAGTCCTATCCTATCCTAATTA
GCA_000004655.2_ASM465v1_rm.out1031           TTAAATAAAGGGTTG--AAAAAA--TATCTAGCTTATCCTATCTTAATAC
GCA_000004655.2_ASM465v1_rm.out2465           --------------------------------------------------
GCA_000004655.2_ASM465v1_rm.out2500           ---------------------------TGTGGCTTCTACTATCTTAATAC
GCA_000004655.2_ASM465v1_rm.out3484           TTAAATGAAAGGTTAAAAAATAT---GTCGCACCTCTCCCATCTTAATTT
GCA_000004655.2_ASM465v1_rm.out3485           TTAAATGAAAGGTTAAAAAATAT---GTCGCACCTCTCCCATCTTAATTT
GCA_000004655.2_ASM465v1_rm.out4118           TTAAATGAATGGTTA------AAAGAATGTGGTTTCTCCTATTTTAAATA
GCA_000004655.2_ASM465v1_rm.out4663           TTAAATGAAGGGATG--GAAAAA--TATGTGGCTTCTCCTATCTTAATAC
GCA_000004655.2_ASM465v1_rm.out4993           TTAAATGAAGGGTTG--AAAAAAAATATTTGGGTTCTCCTATCTTAATAC
GCA_000004655.2_ASM465v1_rm.out5800           TTAAACGAAATGAAGGGTTGGAAAAAATGTGGCTTCTCCTATCTTAATAC
GCA_000004655.2_ASM465v1_rm.out5801           TTAAACGAAATGAAGGGTTGGAAAAAATGTGGCTTCTCCTATCTTAATAC
GCA_000004655.2_ASM465v1_rm.out5833           -----------------TGGACTAACTAATGGCTTCTTCTATCTTAATAT
GCA_000004655.2_ASM465v1_rm.out7343           TTAAATGAAGGGTTG--GAAAAA--TAGGTGGCTTCTCCTATCTTAATA-
GCA_000576065.1_Oryza_nivara_v1.0_rm.out74    TTAAAG-AAGGATTG--GAAAAA----TGTGGCTTCTCGTATCTTAATAC
GCA_000576065.1_Oryza_nivara_v1.0_rm.out146   --------------------------------------------------
GCA_000576065.1_Oryza_nivara_v1.0_rm.out1879  TTAAATGAAGGGTTG--GAAAAA--TATGTGGCTTCTCCTATCTTAATAC
GCA_000576065.1_Oryza_nivara_v1.0_rm.out2178  TTAAATGAAAGGTTTGAAAATATGTGGCTAGTCCTATCCTATCCTAATTA
GCA_000576065.1_Oryza_nivara_v1.0_rm.out2192  TTAAATAAAGGGTTG--AAAAAA--TATCTAGCTTCTCCTATCTTAATAC
GCA_000576065.1_Oryza_nivara_v1.0_rm.out3594  ---------------------------TGTGGCTTCTACTATCTTAATAC
GCA_000576065.1_Oryza_nivara_v1.0_rm.out4445  TTAAATGAAAGGTTAAAAAATAT---GTCGCACCTCTCCCATCTTAATTT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out5007  TTAAATGAATGGTTA------AAAGAATGTGGTTTCTCCTATTTTAAATA
GCA_000576065.1_Oryza_nivara_v1.0_rm.out5510  TTAAATGAAGGGATG--GAAAAA--TATGTGGCTTCTCCTATCTTAATAC
GCA_000576065.1_Oryza_nivara_v1.0_rm.out6583  TTAAACGAAACGAAGGGTTGGAAAAAATGTGGCTTCTCCTATCTTAATAC

GCA_000004655.2_ASM465v1_rm.out79             CATCGGATGGCTAG--CTCTT-TCTAGCCATCCCAACTTTTTTT--
GCA_000004655.2_ASM465v1_rm.out1018           CATCGGATGGCTAG--CTTCT-CCTAATCATCTCAGTTTTTTTTTT
GCA_000004655.2_ASM465v1_rm.out1031           AATTGGATGGCTAA--CTCCT-TCTAGCCATCCCAACAATTTTTTT
GCA_000004655.2_ASM465v1_rm.out2465           ----------------------------------------------
GCA_000004655.2_ASM465v1_rm.out2500           CATTGGATATGACTAGCTGCT-CCTAACCTGCATCCTAAC------
GCA_000004655.2_ASM465v1_rm.out3484           CATCAGATAGCCGGTAATTCTTCCTAGCCATCTCAGCA--------
GCA_000004655.2_ASM465v1_rm.out3485           CATCAGATAGCCGGTAATTCTTCCTAGCCATCTCAGCA--------
GCA_000004655.2_ASM465v1_rm.out4118           CCTTTAGTTGACTA--GTTCCTTATAGCCATCTCAGCTTTTTTTTT
GCA_000004655.2_ASM465v1_rm.out4663           CATTGGAGTGCTAG--TTTTT-TTT---------------------
GCA_000004655.2_ASM465v1_rm.out4993           CATTGGATGGCTAG--CTCCT-TCTAGCCATCCCAACATT------
GCA_000004655.2_ASM465v1_rm.out5800           CATTAAATGGCTAG--TTTCT-TCTAGCTATCCCAACATTT-----
GCA_000004655.2_ASM465v1_rm.out5801           CATTAAATGGCTAG--TTTCT-TCTAGCTATCCCAACATTT-----
GCA_000004655.2_ASM465v1_rm.out5833           TATTGGATGGCTAG--CTTCT-TCTAGCTATCCCAATATTTT----
GCA_000004655.2_ASM465v1_rm.out7343           ----------------------------------------------
GCA_000576065.1_Oryza_nivara_v1.0_rm.out74    CATCGGATGGCTAG--CTCTT-TCTAGCCATCCCAACTTTTTTTT-
GCA_000576065.1_Oryza_nivara_v1.0_rm.out146   ----------------------------------------------
GCA_000576065.1_Oryza_nivara_v1.0_rm.out1879  CATTGGATGACTAG--CTCCT-TCTAGGCATCCCAACATTTTTTTT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out2178  CATCGGATGGCTAG--CTTCT-CCTAATCATCTCAGTTTTTTTTTT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out2192  AATTGGATGGCTAG--CTCCT-TCTAGCCATCCCAACAATTTTTTT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out3594  CATTGGATATGACTAGCTGCT-CCTAACCTGCATCCTAAC------
GCA_000576065.1_Oryza_nivara_v1.0_rm.out4445  CATCAGATAGCCGGTAATTCTTCCTAGCCATCTCAGCA--------
GCA_000576065.1_Oryza_nivara_v1.0_rm.out5007  CCTTTAGTTGACTA--GTTCCTTATAGCCATCTCAGCTTTTTTTTT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out5510  CATTGGAGTGCTAG--TTTTT-TTT---------------------
GCA_000576065.1_Oryza_nivara_v1.0_rm.out6583  CATTAAATGGCTAG--CTTCT-TTTAGCTATCCCAATATTTT----
//
