LICENSE
README.md
setup.py
AnnoSINE/AnnoSINE_v2.py
AnnoSINE/SINEFinder.py
AnnoSINE/TSD_Searcher_multi.js
AnnoSINE/__init__.py
AnnoSINE/paf2blast6_chunking2_parallel3_ordered_parts.py
AnnoSINE/Dfam_hmm/DF0000001_MIR/DF0000001_MIR.hmm
AnnoSINE/Dfam_hmm/DF0000007_AluJb/DF0000007_AluJb.hmm
AnnoSINE/Dfam_hmm/DF0000034_AluJo/DF0000034_AluJo.hmm
AnnoSINE/Dfam_hmm/DF0000039_AluSg/DF0000039_AluSg.hmm
AnnoSINE/Dfam_hmm/DF0000051_AluSz/DF0000051_AluSz.hmm
AnnoSINE/Dfam_hmm/DF0000067_AmnSINE1/DF0000067_AmnSINE1.hmm
AnnoSINE/Dfam_hmm/DF0000068_AmnSINE2/DF0000068_AmnSINE2.hmm
AnnoSINE/Dfam_hmm/DF0000073_BC200/DF0000073_BC200.hmm
AnnoSINE/Dfam_hmm/DF0000142_FAM/DF0000142_FAM.hmm
AnnoSINE/Dfam_hmm/DF0000143_FLAM_A/DF0000143_FLAM_A.hmm
AnnoSINE/Dfam_hmm/DF0000144_FLAM_C/DF0000144_FLAM_C.hmm
AnnoSINE/Dfam_hmm/DF0000147_FRAM/DF0000147_FRAM.hmm
AnnoSINE/Dfam_hmm/DF0000368_LFSINE_Vert/DF0000368_LFSINE_Vert.hmm
AnnoSINE/Dfam_hmm/DF0000974_MIR3/DF0000974_MIR3.hmm
AnnoSINE/Dfam_hmm/DF0000975_MIRb/DF0000975_MIRb.hmm
AnnoSINE/Dfam_hmm/DF0000976_MIRc/DF0000976_MIRc.hmm
AnnoSINE/Dfam_hmm/DF0000996_MamSINE1/DF0000996_MamSINE1.hmm
AnnoSINE/Dfam_hmm/DF0001253_MIR1_Amn/DF0001253_MIR1_Amn.hmm
AnnoSINE/Dfam_hmm/DF0001353_CELE45/DF0001353_CELE45.hmm
AnnoSINE/Dfam_hmm/DF0001423_LmeSINE1c/DF0001423_LmeSINE1c.hmm
AnnoSINE/Dfam_hmm/DF0001522_SINE1_CE/DF0001522_SINE1_CE.hmm
AnnoSINE/Dfam_hmm/DF0001733_B1_Mm/DF0001733_B1_Mm.hmm
AnnoSINE/Dfam_hmm/DF0001734_B1_Mus1/DF0001734_B1_Mus1.hmm
AnnoSINE/Dfam_hmm/DF0001735_B2_Mm1a/DF0001735_B2_Mm1a.hmm
AnnoSINE/Dfam_hmm/DF0001736_B2_Mm1t/DF0001736_B2_Mm1t.hmm
AnnoSINE/Dfam_hmm/DF0001737_B2_Mm2/DF0001737_B2_Mm2.hmm
AnnoSINE/Dfam_hmm/DF0001738_B3/DF0001738_B3.hmm
AnnoSINE/Dfam_hmm/DF0001739_B3A/DF0001739_B3A.hmm
AnnoSINE/Dfam_hmm/DF0001740_B4/DF0001740_B4.hmm
AnnoSINE/Dfam_hmm/DF0001741_BC1_Mm/DF0001741_BC1_Mm.hmm
AnnoSINE/Dfam_hmm/DF0001792_ID_B1/DF0001792_ID_B1.hmm
AnnoSINE/Dfam_hmm/DF0001979_PB1D11/DF0001979_PB1D11.hmm
AnnoSINE/Dfam_hmm/DF0002197_RSINE1/DF0002197_RSINE1.hmm
AnnoSINE/Dfam_hmm/DF0002409_B1_Mur2/DF0002409_B1_Mur2.hmm
AnnoSINE/Dfam_hmm/DF0002616_B1_Mur4/DF0002616_B1_Mur4.hmm
AnnoSINE/Dfam_hmm/DF0002622_SINE2-5_DR/DF0002622_SINE2-5_DR.hmm
AnnoSINE/Dfam_hmm/DF0002805_SINE2-1_DR/DF0002805_SINE2-1_DR.hmm
AnnoSINE/Dfam_hmm/DF0002884_SINE2-1B_DR/DF0002884_SINE2-1B_DR.hmm
AnnoSINE/Dfam_hmm/DF0002911_SINE3-1a/DF0002911_SINE3-1a.hmm
AnnoSINE/Dfam_hmm/DF0003037_SINE_DR1/DF0003037_SINE_DR1.hmm
AnnoSINE/Dfam_hmm/DF0003101_PB1/DF0003101_PB1.hmm
AnnoSINE/Dfam_hmm/DF0003116_B1_Mur1/DF0003116_B1_Mur1.hmm
AnnoSINE/Dfam_hmm/DF0003164_HE1_DR1/DF0003164_HE1_DR1.hmm
AnnoSINE/Dfam_hmm/DF0003194_SINE3-1/DF0003194_SINE3-1.hmm
AnnoSINE/Dfam_hmm/DF0003224_B1_Mur3/DF0003224_B1_Mur3.hmm
AnnoSINE/Dfam_hmm/DF0003231_DANA/DF0003231_DANA.hmm
AnnoSINE/Dfam_hmm/DF0003372_SINE2-4_DR/DF0003372_SINE2-4_DR.hmm
AnnoSINE/Dfam_hmm/DF0003424_PB1D10/DF0003424_PB1D10.hmm
AnnoSINE/Dfam_hmm/DF0003702_B1_Mus2/DF0003702_B1_Mus2.hmm
AnnoSINE/Dfam_hmm/DF0003798_B1F1/DF0003798_B1F1.hmm
AnnoSINE/Dfam_hmm/DF0003898_SINE2-3_DR/DF0003898_SINE2-3_DR.hmm
AnnoSINE/Dfam_hmm/DF0003927_HE2_DR/DF0003927_HE2_DR.hmm
AnnoSINE/Dfam_hmm/DF0004022_PB1D7/DF0004022_PB1D7.hmm
AnnoSINE/Dfam_hmm/DF0004028_SINE2-2_DR/DF0004028_SINE2-2_DR.hmm
AnnoSINE/Dfam_hmm/DF0004110_PB1D9/DF0004110_PB1D9.hmm
AnnoSINE/Dfam_hmm/DF0004152_ID4_v/DF0004152_ID4_v.hmm
AnnoSINE/Dfam_hmm/DF0004154_B4A/DF0004154_B4A.hmm
AnnoSINE/Dfam_hmm/DF0004164_B1F2/DF0004164_B1F2.hmm
AnnoSINE/Dfam_hmm/DF0004166_SINE_TE/DF0004166_SINE_TE.hmm
AnnoSINE/Dfam_hmm/DF0004188_ID4/DF0004188_ID4.hmm
AnnoSINE/Dfam_hmm/DF0004194_MIR_Testu/DF0004194_MIR_Testu.hmm
AnnoSINE/Dfam_hmm/DF0004237_AFROSINE-1_ChrAsi/DF0004237_AFROSINE-1_ChrAsi.hmm
AnnoSINE/Dfam_hmm/DF0004352_Halyomorpha_halys-1_family-77/DF0004352_Halyomorpha_halys-1_family-77.hmm
AnnoSINE/Dfam_hmm/DF0004437_Halyomorpha_halys-1_family-78/DF0004437_Halyomorpha_halys-1_family-78.hmm
AnnoSINE/Dfam_hmm/DF0004450_Halyomorpha_halys-1_family-121/DF0004450_Halyomorpha_halys-1_family-121.hmm
AnnoSINE/Dfam_hmm/DF0004475_Halyomorpha_halys-1_family-53/DF0004475_Halyomorpha_halys-1_family-53.hmm
AnnoSINE/Dfam_hmm/DF0004512_Halyomorpha_halys-1_family-142/DF0004512_Halyomorpha_halys-1_family-142.hmm
AnnoSINE/Dfam_hmm/DF0004528_Halyomorpha_halys-1_family-56/DF0004528_Halyomorpha_halys-1_family-56.hmm
AnnoSINE/Dfam_hmm/DF0004542_Halyomorpha_halys-1_family-137/DF0004542_Halyomorpha_halys-1_family-137.hmm
AnnoSINE/Dfam_hmm/DF0004592_Halyomorpha_halys-1_family-75/DF0004592_Halyomorpha_halys-1_family-75.hmm
AnnoSINE/Dfam_hmm/DF0005178_Halyomorpha_halys-2_family-62/DF0005178_Halyomorpha_halys-2_family-62.hmm
AnnoSINE/Dfam_hmm/DF0005218_Halyomorpha_halys-3_family-34/DF0005218_Halyomorpha_halys-3_family-34.hmm
AnnoSINE/Dfam_hmm/DF0005385_Halyomorpha_halys-4_family-1734/DF0005385_Halyomorpha_halys-4_family-1734.hmm
AnnoSINE/Dfam_hmm/DF0005505_Halyomorpha_halys-5_family-410/DF0005505_Halyomorpha_halys-5_family-410.hmm
AnnoSINE/Dfam_hmm/DF0005915_Halyomorpha_halys-5_family-1803/DF0005915_Halyomorpha_halys-5_family-1803.hmm
AnnoSINE/Dfam_hmm/DF0006270_Halyomorpha_halys-6_family-2057/DF0006270_Halyomorpha_halys-6_family-2057.hmm
AnnoSINE/Dfam_hmm/DF0006319_TguSINE1_Ucy/DF0006319_TguSINE1_Ucy.hmm
AnnoSINE/Dfam_hmm/DF0006941_ZenoSINE1_Avan/DF0006941_ZenoSINE1_Avan.hmm
AnnoSINE/Dfam_hmm/DF0006942_ZenoSINE1_eTal/DF0006942_ZenoSINE1_eTal.hmm
AnnoSINE/Dfam_hmm/DF0006943_ZenoSINE1_hBur/DF0006943_ZenoSINE1_hBur.hmm
AnnoSINE/Dfam_hmm/DF0006944_ZenoSINE1_hDem/DF0006944_ZenoSINE1_hDem.hmm
AnnoSINE/Dfam_hmm/DF0006945_ZenoSINE1_hSar/DF0006945_ZenoSINE1_hSar.hmm
AnnoSINE/Dfam_hmm/DF0006946_ZenoSINE1_hTel/DF0006946_ZenoSINE1_hTel.hmm
AnnoSINE/Dfam_hmm/DF0006947_ZenoSINE1_lDor/DF0006947_ZenoSINE1_lDor.hmm
AnnoSINE/Dfam_hmm/DF0006948_ZenoSINE2_eTal/DF0006948_ZenoSINE2_eTal.hmm
AnnoSINE/Dfam_hmm/DF0006949_ZenoSINE2_hBur/DF0006949_ZenoSINE2_hBur.hmm
AnnoSINE/Dfam_hmm/DF0006950_ZenoSINE2_hDem/DF0006950_ZenoSINE2_hDem.hmm
AnnoSINE/Dfam_hmm/DF0006951_ZenoSINE2_lDor/DF0006951_ZenoSINE2_lDor.hmm
AnnoSINE/Dfam_hmm/DF0006952_ZenoSINE3_eTal/DF0006952_ZenoSINE3_eTal.hmm
AnnoSINE/Dfam_hmm/DF0006953_ZenoSINE3_lDor/DF0006953_ZenoSINE3_lDor.hmm
AnnoSINE/Dfam_hmm/DF0006954_ZenoSINE4_eTal/DF0006954_ZenoSINE4_eTal.hmm
AnnoSINE/Dfam_hmm/DF0006955_ZenoSINE4_lDor/DF0006955_ZenoSINE4_lDor.hmm
AnnoSINE/Dfam_hmm/DF0006956_ZenoSINE5_eTal/DF0006956_ZenoSINE5_eTal.hmm
AnnoSINE/Dfam_hmm/DF0006957_ZenoSINE5_lDor/DF0006957_ZenoSINE5_lDor.hmm
AnnoSINE/Dfam_hmm/DF0289960_CfSE1/DF0289960_CfSE1.hmm
AnnoSINE/Dfam_hmm/DF0289961_CsSE1/DF0289961_CsSE1.hmm
AnnoSINE/Dfam_hmm/DF0289962_CsSE2/DF0289962_CsSE2.hmm
AnnoSINE/Dfam_hmm/DF0289963_EpSE1/DF0289963_EpSE1.hmm
AnnoSINE/Dfam_hmm/DF0289964_LaSE1/DF0289964_LaSE1.hmm
AnnoSINE/Dfam_hmm/DF0289965_LaSE2/DF0289965_LaSE2.hmm
AnnoSINE/Dfam_hmm/DF0289966_MsSE1/DF0289966_MsSE1.hmm
AnnoSINE/Dfam_hmm/DF0289967_MsSE2/DF0289967_MsSE2.hmm
AnnoSINE/Dfam_hmm/DF0289968_ObSE1/DF0289968_ObSE1.hmm
AnnoSINE/Dfam_hmm/DF0289969_ObSE2/DF0289969_ObSE2.hmm
AnnoSINE/Dfam_hmm/DF0289970_PgSE1/DF0289970_PgSE1.hmm
AnnoSINE/Dfam_hmm/DF0289971_PmSE1/DF0289971_PmSE1.hmm
AnnoSINE/Dfam_hmm/DF0289972_PxSE1/DF0289972_PxSE1.hmm
AnnoSINE/Dfam_hmm/DF0289973_PxSE2/DF0289973_PxSE2.hmm
AnnoSINE/Dfam_hmm/DF0289974_PxSE3/DF0289974_PxSE3.hmm
AnnoSINE/Dfam_hmm/DF0289975_PxSE4/DF0289975_PxSE4.hmm
AnnoSINE/Dfam_hmm/DF0289976_PxSE5/DF0289976_PxSE5.hmm
AnnoSINE/Dfam_hmm/DF0289977_PzSE1/DF0289977_PzSE1.hmm
AnnoSINE/Dfam_hmm/DF0289978_SeSE1/DF0289978_SeSE1.hmm
AnnoSINE/Dfam_hmm/DF0289979_SfSE1/DF0289979_SfSE1.hmm
AnnoSINE/Dfam_hmm/DF0289980_SlittSE1/DF0289980_SlittSE1.hmm
AnnoSINE/Dfam_hmm/DF0289981_SlituSE1/DF0289981_SlituSE1.hmm
AnnoSINE/Dfam_hmm/DF2407969_Acol_tSINE_Ele1/DF2407969_Acol_tSINE_Ele1.hmm
AnnoSINE/Dfam_hmm/DF2407970_Acol_tSINE_Ele2/DF2407970_Acol_tSINE_Ele2.hmm
AnnoSINE/Family_Seq/AtSB2/AtSB2
AnnoSINE/Family_Seq/AtSB2/AtSB2-aln-stockholm.txt
AnnoSINE/Family_Seq/AtSB2/AtSB2.hmm
AnnoSINE/Family_Seq/AtSB3/AtSB3
AnnoSINE/Family_Seq/AtSB3/AtSB3-aln-stockholm.txt
AnnoSINE/Family_Seq/AtSB3/AtSB3.hmm
AnnoSINE/Family_Seq/AtSB4/AtSB4
AnnoSINE/Family_Seq/AtSB4/AtSB4-aln-stockholm.txt
AnnoSINE/Family_Seq/AtSB4/AtSB4.hmm
AnnoSINE/Family_Seq/AtSB5/AtSB5
AnnoSINE/Family_Seq/AtSB5/AtSB5-aln-stockholm.txt
AnnoSINE/Family_Seq/AtSB5/AtSB5.hmm
AnnoSINE/Family_Seq/AtSB6/AtSB6
AnnoSINE/Family_Seq/AtSB6/AtSB6-aln-stockholm.txt
AnnoSINE/Family_Seq/AtSB6/AtSB6.hmm
AnnoSINE/Family_Seq/BoSB10A/BoSB10A
AnnoSINE/Family_Seq/BoSB10A/BoSB10A-aln-stockholm.txt
AnnoSINE/Family_Seq/BoSB10A/BoSB10A.hmm
AnnoSINE/Family_Seq/BoSB11/BoSB11
AnnoSINE/Family_Seq/BoSB11/BoSB11-aln-stockholm.txt
AnnoSINE/Family_Seq/BoSB11/BoSB11.hmm
AnnoSINE/Family_Seq/BoSB12/BoSB12
AnnoSINE/Family_Seq/BoSB12/BoSB12-aln-stockholm.txt
AnnoSINE/Family_Seq/BoSB12/BoSB12.hmm
AnnoSINE/Family_Seq/BoSB13/BoSB13
AnnoSINE/Family_Seq/BoSB13/BoSB13-aln-stockholm.txt
AnnoSINE/Family_Seq/BoSB13/BoSB13.hmm
AnnoSINE/Family_Seq/BoSB14A/BoSB14A
AnnoSINE/Family_Seq/BoSB14A/BoSB14A-aln-stockholm.txt
AnnoSINE/Family_Seq/BoSB14A/BoSB14A.hmm
AnnoSINE/Family_Seq/BoSB14B/BoSB14B
AnnoSINE/Family_Seq/BoSB14B/BoSB14B-aln-stockholm.txt
AnnoSINE/Family_Seq/BoSB14B/BoSB14B.hmm
AnnoSINE/Family_Seq/BoSB15/BoSB15
AnnoSINE/Family_Seq/BoSB15/BoSB15-aln-stockholm.txt
AnnoSINE/Family_Seq/BoSB15/BoSB15.hmm
AnnoSINE/Family_Seq/BoSB1A/BoSB1A
AnnoSINE/Family_Seq/BoSB1A/BoSB1A-aln-stockholm.txt
AnnoSINE/Family_Seq/BoSB1A/BoSB1A.hmm
AnnoSINE/Family_Seq/BoSB2/BoSB2
AnnoSINE/Family_Seq/BoSB2/BoSB2-aln-stockholm.txt
AnnoSINE/Family_Seq/BoSB2/BoSB2.hmm
AnnoSINE/Family_Seq/BoSB3/BoSB3
AnnoSINE/Family_Seq/BoSB3/BoSB3-aln-stockholm.txt
AnnoSINE/Family_Seq/BoSB3/BoSB3.hmm
AnnoSINE/Family_Seq/BoSB5A/BoSB5A
AnnoSINE/Family_Seq/BoSB5A/BoSB5A-aln-stockholm.txt
AnnoSINE/Family_Seq/BoSB5A/BoSB5A.hmm
AnnoSINE/Family_Seq/BoSB5B/BoSB5B
AnnoSINE/Family_Seq/BoSB5B/BoSB5B-aln-stockholm.txt
AnnoSINE/Family_Seq/BoSB5B/BoSB5B.hmm
AnnoSINE/Family_Seq/BoSB5C/BoSB5C
AnnoSINE/Family_Seq/BoSB5C/BoSB5C-aln-stockholm.txt
AnnoSINE/Family_Seq/BoSB5C/BoSB5C.hmm
AnnoSINE/Family_Seq/BoSB5D/BoSB5D
AnnoSINE/Family_Seq/BoSB5D/BoSB5D-aln-stockholm.txt
AnnoSINE/Family_Seq/BoSB5D/BoSB5D.hmm
AnnoSINE/Family_Seq/BoSB6A/BoSB6A
AnnoSINE/Family_Seq/BoSB6A/BoSB6A-aln-stockholm.txt
AnnoSINE/Family_Seq/BoSB6A/BoSB6A.hmm
AnnoSINE/Family_Seq/BoSB6B/BoSB6B
AnnoSINE/Family_Seq/BoSB6B/BoSB6B-aln-stockholm.txt
AnnoSINE/Family_Seq/BoSB6B/BoSB6B.hmm
AnnoSINE/Family_Seq/BoSB6C/BoSB6C
AnnoSINE/Family_Seq/BoSB6C/BoSB6C-aln-stockholm.txt
AnnoSINE/Family_Seq/BoSB6C/BoSB6C.hmm
AnnoSINE/Family_Seq/BoSB6D/BoSB6D
AnnoSINE/Family_Seq/BoSB6D/BoSB6D-aln-stockholm.txt
AnnoSINE/Family_Seq/BoSB6D/BoSB6D.hmm
AnnoSINE/Family_Seq/BoSB7A/BoSB7A
AnnoSINE/Family_Seq/BoSB7A/BoSB7A-aln-stockholm.txt
AnnoSINE/Family_Seq/BoSB7A/BoSB7A.hmm
AnnoSINE/Family_Seq/BoSB8A/BoSB8A
AnnoSINE/Family_Seq/BoSB8A/BoSB8A-aln-stockholm.txt
AnnoSINE/Family_Seq/BoSB8A/BoSB8A.hmm
AnnoSINE/Family_Seq/BoSB8B/BoSB8B
AnnoSINE/Family_Seq/BoSB8B/BoSB8B-aln-stockholm.txt
AnnoSINE/Family_Seq/BoSB8B/BoSB8B.hmm
AnnoSINE/Family_Seq/BoSB9A/BoSB9A
AnnoSINE/Family_Seq/BoSB9A/BoSB9A-aln-stockholm.txt
AnnoSINE/Family_Seq/BoSB9A/BoSB9A.hmm
AnnoSINE/Family_Seq/BoSB9B/BoSB9B
AnnoSINE/Family_Seq/BoSB9B/BoSB9B-aln-stockholm.txt
AnnoSINE/Family_Seq/BoSB9B/BoSB9B.hmm
AnnoSINE/Family_Seq/CASINE/CASINE
AnnoSINE/Family_Seq/CASINE/CASINE-aln-stockholm.txt
AnnoSINE/Family_Seq/CASINE/CASINE.hmm
AnnoSINE/Family_Seq/F524/F524
AnnoSINE/Family_Seq/F524/F524-aln-stockholm.txt
AnnoSINE/Family_Seq/F524/F524.hmm
AnnoSINE/Family_Seq/OsSN3/OsSN3
AnnoSINE/Family_Seq/OsSN3/OsSN3-aln-stockholm.txt
AnnoSINE/Family_Seq/OsSN3/OsSN3.hmm
AnnoSINE/Family_Seq/PTr-3/PTr-3
AnnoSINE/Family_Seq/PTr-3/PTr-3-aln-stockholm.txt
AnnoSINE/Family_Seq/PTr-3/PTr-3.hmm
AnnoSINE/Family_Seq/S1_BrN/S1_BrN
AnnoSINE/Family_Seq/S1_BrN/S1_BrN-aln-stockholm.txt
AnnoSINE/Family_Seq/S1_BrN/S1_BrN.hmm
AnnoSINE/Family_Seq/SHANSINE_MT/SHANSINE_MT
AnnoSINE/Family_Seq/SHANSINE_MT/SHANSINE_MT-aln-stockholm.txt
AnnoSINE/Family_Seq/SHANSINE_MT/SHANSINE_MT.hmm
AnnoSINE/Family_Seq/SINE-12_OS/SINE-12_OS
AnnoSINE/Family_Seq/SINE-12_OS/SINE-12_OS-aln-stockholm.txt
AnnoSINE/Family_Seq/SINE-12_OS/SINE-12_OS.hmm
AnnoSINE/Family_Seq/SINE-1_AIp/SINE-1_AIp
AnnoSINE/Family_Seq/SINE-1_AIp/SINE-1_AIp-aln-stockholm.txt
AnnoSINE/Family_Seq/SINE-1_AIp/SINE-1_AIp.hmm
AnnoSINE/Family_Seq/SINE-1_ATr/SINE-1_ATr
AnnoSINE/Family_Seq/SINE-1_ATr/SINE-1_ATr-aln-stockholm.txt
AnnoSINE/Family_Seq/SINE-1_ATr/SINE-1_ATr.hmm
AnnoSINE/Family_Seq/SINE-1_ECa/SINE-1_ECa
AnnoSINE/Family_Seq/SINE-1_ECa/SINE-1_ECa-aln-stockholm.txt
AnnoSINE/Family_Seq/SINE-1_ECa/SINE-1_ECa.hmm
AnnoSINE/Family_Seq/SINE-1_EPa/SINE-1_EPa
AnnoSINE/Family_Seq/SINE-1_EPa/SINE-1_EPa-aln-stockholm.txt
AnnoSINE/Family_Seq/SINE-1_EPa/SINE-1_EPa.hmm
AnnoSINE/Family_Seq/SINE-1_Mad/SINE-1_Mad
AnnoSINE/Family_Seq/SINE-1_Mad/SINE-1_Mad.hmm
AnnoSINE/Family_Seq/SINE-2_Mad/SINE-2_Mad
AnnoSINE/Family_Seq/SINE-2_Mad/SINE-2_Mad-aln-stockholm.txt
AnnoSINE/Family_Seq/SINE-2_Mad/SINE-2_Mad.hmm
AnnoSINE/Family_Seq/SINE-4_Mad/SINE-4_Mad
AnnoSINE/Family_Seq/SINE-4_Mad/SINE-4_Mad-aln-stockholm.txt
AnnoSINE/Family_Seq/SINE-4_Mad/SINE-4_Mad.hmm
AnnoSINE/Family_Seq/SINE-5_Mad/SINE-5_Mad
AnnoSINE/Family_Seq/SINE-5_Mad/SINE-5_Mad-aln-stockholm.txt
AnnoSINE/Family_Seq/SINE-5_Mad/SINE-5_Mad.hmm
AnnoSINE/Family_Seq/SINE-6_CR/SINE-6_CR
AnnoSINE/Family_Seq/SINE-6_CR/SINE-6_CR-aln-stockholm.txt
AnnoSINE/Family_Seq/SINE-6_CR/SINE-6_CR.hmm
AnnoSINE/Family_Seq/SINE16_OS/SINE16_OS
AnnoSINE/Family_Seq/SINE16_OS/SINE16_OS-aln-stockholm.txt
AnnoSINE/Family_Seq/SINE16_OS/SINE16_OS.hmm
AnnoSINE/Family_Seq/SINE1R5_OS/SINE1R5_OS
AnnoSINE/Family_Seq/SINE1R5_OS/SINE1R5_OS-aln-stockholm.txt
AnnoSINE/Family_Seq/SINE1R5_OS/SINE1R5_OS.hmm
AnnoSINE/Family_Seq/SINE1_MT/SINE1_MT
AnnoSINE/Family_Seq/SINE1_MT/SINE1_MT-aln-stockholm.txt
AnnoSINE/Family_Seq/SINE1_MT/SINE1_MT.hmm
AnnoSINE/Family_Seq/SINE1_OS/SINE1_OS
AnnoSINE/Family_Seq/SINE1_OS/SINE1_OS-aln-stockholm.txt
AnnoSINE/Family_Seq/SINE1_OS/SINE1_OS.hmm
AnnoSINE/Family_Seq/SINE1_SO/SINE1_SO
AnnoSINE/Family_Seq/SINE1_SO/SINE1_SO-aln-stockholm.txt
AnnoSINE/Family_Seq/SINE1_SO/SINE1_SO.hmm
AnnoSINE/Family_Seq/SINE2-11_OS/SINE2-11_OS
AnnoSINE/Family_Seq/SINE2-11_OS/SINE2-11_OS-aln-stockholm.txt
AnnoSINE/Family_Seq/SINE2-11_OS/SINE2-11_OS.hmm
AnnoSINE/Family_Seq/SINE2-11_SBi/SINE2-11_SBi
AnnoSINE/Family_Seq/SINE2-11_SBi/SINE2-11_SBi-aln-stockholm.txt
AnnoSINE/Family_Seq/SINE2-11_SBi/SINE2-11_SBi.hmm
AnnoSINE/Family_Seq/SINE2-12_OS/SINE2-12_OS
AnnoSINE/Family_Seq/SINE2-12_OS/SINE2-12_OS-aln-stockholm.txt
AnnoSINE/Family_Seq/SINE2-12_OS/SINE2-12_OS.hmm
AnnoSINE/Family_Seq/SINE2-12_SBi/SINE2-12_SBi
AnnoSINE/Family_Seq/SINE2-12_SBi/SINE2-12_SBi-aln-stockholm.txt
AnnoSINE/Family_Seq/SINE2-12_SBi/SINE2-12_SBi.hmm
AnnoSINE/Family_Seq/SINE2-1_ALy/SINE2-1_ALy
AnnoSINE/Family_Seq/SINE2-1_ALy/SINE2-1_ALy-aln-stockholm.txt
AnnoSINE/Family_Seq/SINE2-1_ALy/SINE2-1_ALy.hmm
AnnoSINE/Family_Seq/SINE2-1_BDi/SINE2-1_BDi
AnnoSINE/Family_Seq/SINE2-1_BDi/SINE2-1_BDi-aln-stockholm.txt
AnnoSINE/Family_Seq/SINE2-1_BDi/SINE2-1_BDi.hmm
AnnoSINE/Family_Seq/SINE2-1_FV/SINE2-1_FV
AnnoSINE/Family_Seq/SINE2-1_FV/SINE2-1_FV-aln-stockholm.txt
AnnoSINE/Family_Seq/SINE2-1_FV/SINE2-1_FV.hmm
AnnoSINE/Family_Seq/SINE2-1_JC/SINE2-1_JC
AnnoSINE/Family_Seq/SINE2-1_JC/SINE2-1_JC-aln-stockholm.txt
AnnoSINE/Family_Seq/SINE2-1_JC/SINE2-1_JC.hmm
AnnoSINE/Family_Seq/SINE2-1_NS/SINE2-1_NS
AnnoSINE/Family_Seq/SINE2-1_NS/SINE2-1_NS-aln-stockholm.txt
AnnoSINE/Family_Seq/SINE2-1_NS/SINE2-1_NS.hmm
AnnoSINE/Family_Seq/SINE2-1_OS/SINE2-1_OS
AnnoSINE/Family_Seq/SINE2-1_OS/SINE2-1_OS-aln-stockholm.txt
AnnoSINE/Family_Seq/SINE2-1_OS/SINE2-1_OS.hmm
AnnoSINE/Family_Seq/SINE2-1_PD/SINE2-1_PD
AnnoSINE/Family_Seq/SINE2-1_PD/SINE2-1_PD-aln-stockholm.txt
AnnoSINE/Family_Seq/SINE2-1_PD/SINE2-1_PD.hmm
AnnoSINE/Family_Seq/SINE2-1_PTr/SINE2-1_PTr
AnnoSINE/Family_Seq/SINE2-1_PTr/SINE2-1_PTr-aln-stockholm.txt
AnnoSINE/Family_Seq/SINE2-1_PTr/SINE2-1_PTr.hmm
AnnoSINE/Family_Seq/SINE2-1_SBi/SINE2-1_SBi
AnnoSINE/Family_Seq/SINE2-1_SBi/SINE2-1_SBi-aln-stockholm.txt
AnnoSINE/Family_Seq/SINE2-1_SBi/SINE2-1_SBi.hmm
AnnoSINE/Family_Seq/SINE2-1_STu/SINE2-1_STu
AnnoSINE/Family_Seq/SINE2-1_STu/SINE2-1_STu-aln-stockholm.txt
AnnoSINE/Family_Seq/SINE2-1_STu/SINE2-1_STu.hmm
AnnoSINE/Family_Seq/SINE2-1_TAe/SINE2-1_TAe
AnnoSINE/Family_Seq/SINE2-1_TAe/SINE2-1_TAe-aln-stockholm.txt
AnnoSINE/Family_Seq/SINE2-1_TAe/SINE2-1_TAe.hmm
AnnoSINE/Family_Seq/SINE2-1_VC/SINE2-1_VC
AnnoSINE/Family_Seq/SINE2-1_VC/SINE2-1_VC-aln-stockholm.txt
AnnoSINE/Family_Seq/SINE2-1_VC/SINE2-1_VC.hmm
AnnoSINE/Family_Seq/SINE2-1_ZM/SINE2-1_ZM
AnnoSINE/Family_Seq/SINE2-1_ZM/SINE2-1_ZM-aln-stockholm.txt
AnnoSINE/Family_Seq/SINE2-1_ZM/SINE2-1_ZM.hmm
AnnoSINE/Family_Seq/SINE2-1a_SBi/SINE2-1a_SBi
AnnoSINE/Family_Seq/SINE2-1a_SBi/SINE2-1a_SBi-aln-stockholm.txt
AnnoSINE/Family_Seq/SINE2-1a_SBi/SINE2-1a_SBi.hmm
AnnoSINE/Family_Seq/SINE2-1c_SBi/SINE2-1c_SBi
AnnoSINE/Family_Seq/SINE2-1c_SBi/SINE2-1c_SBi-aln-stockholm.txt
AnnoSINE/Family_Seq/SINE2-1c_SBi/SINE2-1c_SBi.hmm
AnnoSINE/Family_Seq/SINE2-2_FV/SINE2-2_FV
AnnoSINE/Family_Seq/SINE2-2_FV/SINE2-2_FV-aln-stockholm.txt
AnnoSINE/Family_Seq/SINE2-2_FV/SINE2-2_FV.hmm
AnnoSINE/Family_Seq/SINE2-2_OS/SINE2-2_OS
AnnoSINE/Family_Seq/SINE2-2_OS/SINE2-2_OS-aln-stockholm.txt
AnnoSINE/Family_Seq/SINE2-2_OS/SINE2-2_OS.hmm
AnnoSINE/Family_Seq/SINE2-2_PTr/SINE2-2_PTr
AnnoSINE/Family_Seq/SINE2-2_PTr/SINE2-2_PTr-aln-stockholm.txt
AnnoSINE/Family_Seq/SINE2-2_PTr/SINE2-2_PTr.hmm
AnnoSINE/Family_Seq/SINE2-2_STu/SINE2-2_STu
AnnoSINE/Family_Seq/SINE2-2_STu/SINE2-2_STu-aln-stockholm.txt
AnnoSINE/Family_Seq/SINE2-2_STu/SINE2-2_STu.hmm
AnnoSINE/Family_Seq/SINE2-3_FV/SINE2-3_FV
AnnoSINE/Family_Seq/SINE2-3_FV/SINE2-3_FV-aln-stockholm.txt
AnnoSINE/Family_Seq/SINE2-3_FV/SINE2-3_FV.hmm
AnnoSINE/Family_Seq/SINE2-3_OS/SINE2-3_OS
AnnoSINE/Family_Seq/SINE2-3_OS/SINE2-3_OS-aln-stockholm.txt
AnnoSINE/Family_Seq/SINE2-3_OS/SINE2-3_OS.hmm
AnnoSINE/Family_Seq/SINE2-4B_OS/SINE2-4B_OS
AnnoSINE/Family_Seq/SINE2-4B_OS/SINE2-4B_OS-aln-stockholm.txt
AnnoSINE/Family_Seq/SINE2-4B_OS/SINE2-4B_OS.hmm
AnnoSINE/Family_Seq/SINE2-4_FV/SINE2-4_FV
AnnoSINE/Family_Seq/SINE2-4_FV/SINE2-4_FV-aln-stockholm.txt
AnnoSINE/Family_Seq/SINE2-4_FV/SINE2-4_FV.hmm
AnnoSINE/Family_Seq/SINE2-4_OS/SINE2-4_OS
AnnoSINE/Family_Seq/SINE2-4_OS/SINE2-4_OS-aln-stockholm.txt
AnnoSINE/Family_Seq/SINE2-4_OS/SINE2-4_OS.hmm
AnnoSINE/Family_Seq/SINE6_OS/SINE6_OS
AnnoSINE/Family_Seq/SINE6_OS/SINE6_OS-aln-stockholm.txt
AnnoSINE/Family_Seq/SINE6_OS/SINE6_OS.hmm
AnnoSINE/Family_Seq/SINE8_OS/SINE8_OS
AnnoSINE/Family_Seq/SINE8_OS/SINE8_OS-aln-stockholm.txt
AnnoSINE/Family_Seq/SINE8_OS/SINE8_OS.hmm
AnnoSINE/Family_Seq/SINE9_OS/SINE9_OS
AnnoSINE/Family_Seq/SINE9_OS/SINE9_OS-aln-stockholm.txt
AnnoSINE/Family_Seq/SINE9_OS/SINE9_OS.hmm
AnnoSINE/Family_Seq/SINEX-1_CR/SINEX-1_CR
AnnoSINE/Family_Seq/SINEX-1_CR/SINEX-1_CR-aln-stockholm.txt
AnnoSINE/Family_Seq/SINEX-1_CR/SINEX-1_CR.hmm
AnnoSINE/Family_Seq/SINEX-2_CR/SINEX-2_CR
AnnoSINE/Family_Seq/SINEX-2_CR/SINEX-2_CR-aln-stockholm.txt
AnnoSINE/Family_Seq/SINEX-2_CR/SINEX-2_CR.hmm
AnnoSINE/Family_Seq/SINEX-3_CR/SINEX-3_CR
AnnoSINE/Family_Seq/SINEX-3_CR/SINEX-3_CR-aln-stockholm.txt
AnnoSINE/Family_Seq/SINEX-3_CR/SINEX-3_CR.hmm
AnnoSINE/Family_Seq/SINEX-4_CR/SINEX-4_CR
AnnoSINE/Family_Seq/SINEX-4_CR/SINEX-4_CR-aln-stockholm.txt
AnnoSINE/Family_Seq/SINEX-4_CR/SINEX-4_CR.hmm
AnnoSINE/Family_Seq/SINEX-5_CR/SINEX-5_CR
AnnoSINE/Family_Seq/SINEX-5_CR/SINEX-5_CR-aln-stockholm.txt
AnnoSINE/Family_Seq/SINEX-5_CR/SINEX-5_CR.hmm
AnnoSINE/Family_Seq/SINE_SO/SINE_SO.hmm
AnnoSINE/Family_Seq/TS/TS.hmm
AnnoSINE/Family_Seq/p-SINE1_OS/p-SINE1_OS
AnnoSINE/Family_Seq/p-SINE1_OS/p-SINE1_OS-aln-stockholm.txt
AnnoSINE/Family_Seq/p-SINE1_OS/p-SINE1_OS.hmm
AnnoSINE/Input_Files/rna_database.fa
annosine2.egg-info/PKG-INFO
annosine2.egg-info/SOURCES.txt
annosine2.egg-info/dependency_links.txt
annosine2.egg-info/entry_points.txt
annosine2.egg-info/requires.txt
annosine2.egg-info/top_level.txt
annosine2.egg-info/zip-safe