Metadata-Version: 2.1
Name: BIO-PEPPA
Version: 1.1.8
Summary: Phylogeny Enhanded Prediction of PAn-genome https://doi.org/10.1101/2020.01.03.894154
Home-page: https://github.com/zheminzhou/PEPPA
Author: Zhemin Zhou
Author-email: zhemin.zhou@warwick.ac.uk
License: UNKNOWN
Description: 
        About PEPPA
        PEPPA (Phylogeny Enhanced Pipeline for PAn-genome) is a pipeline that can construct a pan-genome from thousands of genetically diversified bacterial genomes. PEPPA implements a combination of tree- and synteny-based approaches to identify and exclude paralogous genes, as well as similarity-based gene predictions that support consistent annotations of genes and pseudogenes in individual genomes.
        
        Citation
        If you use GrapeTree please cite the pre-print in BioRxiv:
        
        Z Zhou, M Achtman (2020) "Accurate reconstruction of the pan- and core- genomes of bacteria with PEPPA" bioRxiv, doi: `https://doi.org/10.1101/2020.01.03.894154 <https://doi.org/10.1101/2020.01.03.894154>`_
        
        * `installation <docs/source/usage/installation.rst>`_
        * `quickstart <docs/source/usage/quickstart.rst>`_
        * `parameters <docs/source/usage/parameters.rst>`_
        * `inputs <docs/source/usage/inputs.rst>`_
        * `outputs <docs/source/usage/outputs.rst>`_
        
Keywords: bioinformatics,microbial,genomics,MLST,pan-genome
Platform: UNKNOWN
Classifier: Development Status :: 5 - Production/Stable
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Operating System :: OS Independent
Description-Content-Type: text/markdown
