CITATION.cff
License.txt
MANIFEST.in
Readme.md
changelog.md
pyproject.toml
setup.cfg
setup.py
.napari/DESCRIPTION.md
.napari/config.yml
package/PartSeg/__init__.py
package/PartSeg/__main__.py
package/PartSeg/changelog.py
package/PartSeg/launcher_main.py
package/PartSeg/version.py
package/PartSeg.egg-info/PKG-INFO
package/PartSeg.egg-info/SOURCES.txt
package/PartSeg.egg-info/dependency_links.txt
package/PartSeg.egg-info/entry_points.txt
package/PartSeg.egg-info/requires.txt
package/PartSeg.egg-info/top_level.txt
package/PartSeg/_launcher/__init__.py
package/PartSeg/_launcher/check_version.py
package/PartSeg/_launcher/main_window.py
package/PartSeg/_roi_analysis/__init__.py
package/PartSeg/_roi_analysis/advanced_window.py
package/PartSeg/_roi_analysis/batch_window.py
package/PartSeg/_roi_analysis/calculation_pipeline_thread.py
package/PartSeg/_roi_analysis/image_view.py
package/PartSeg/_roi_analysis/main_window.py
package/PartSeg/_roi_analysis/measurement_widget.py
package/PartSeg/_roi_analysis/partseg_settings.py
package/PartSeg/_roi_analysis/prepare_plan_widget.py
package/PartSeg/_roi_analysis/profile_export.py
package/PartSeg/_roi_mask/__init__.py
package/PartSeg/_roi_mask/batch_proceed.py
package/PartSeg/_roi_mask/image_view.py
package/PartSeg/_roi_mask/main_window.py
package/PartSeg/_roi_mask/segmentation_info_dialog.py
package/PartSeg/_roi_mask/simple_measurements.py
package/PartSeg/_roi_mask/stack_settings.py
package/PartSeg/common_backend/__init__.py
package/PartSeg/common_backend/abstract_class.py
package/PartSeg/common_backend/base_argparser.py
package/PartSeg/common_backend/base_settings.py
package/PartSeg/common_backend/except_hook.py
package/PartSeg/common_backend/load_backup.py
package/PartSeg/common_backend/partially_const_dict.py
package/PartSeg/common_backend/progress_thread.py
package/PartSeg/common_backend/python_syntax_highlight.py
package/PartSeg/common_backend/segmentation_thread.py
package/PartSeg/common_gui/__init__.py
package/PartSeg/common_gui/about_dialog.py
package/PartSeg/common_gui/advanced_tabs.py
package/PartSeg/common_gui/algorithms_description.py
package/PartSeg/common_gui/channel_control.py
package/PartSeg/common_gui/collapse_checkbox.py
package/PartSeg/common_gui/colormap_creator.py
package/PartSeg/common_gui/custom_buttons.py
package/PartSeg/common_gui/custom_load_dialog.py
package/PartSeg/common_gui/custom_save_dialog.py
package/PartSeg/common_gui/equal_column_layout.py
package/PartSeg/common_gui/error_report.py
package/PartSeg/common_gui/exception_hooks.py
package/PartSeg/common_gui/flow_layout.py
package/PartSeg/common_gui/icon_selector.py
package/PartSeg/common_gui/image_adjustment.py
package/PartSeg/common_gui/label_create.py
package/PartSeg/common_gui/lock_checkbox.py
package/PartSeg/common_gui/main_window.py
package/PartSeg/common_gui/mask_widget.py
package/PartSeg/common_gui/multiple_file_widget.py
package/PartSeg/common_gui/napari_image_view.py
package/PartSeg/common_gui/napari_viewer_wrap.py
package/PartSeg/common_gui/numpy_qimage.py
package/PartSeg/common_gui/qt_console.py
package/PartSeg/common_gui/qt_modal.py
package/PartSeg/common_gui/searchable_combo_box.py
package/PartSeg/common_gui/searchable_list_widget.py
package/PartSeg/common_gui/select_multiple_files.py
package/PartSeg/common_gui/show_directory_dialog.py
package/PartSeg/common_gui/stack_image_view.py
package/PartSeg/common_gui/stacked_widget_with_selector.py
package/PartSeg/common_gui/universal_gui_part.py
package/PartSeg/common_gui/waiting_dialog.py
package/PartSeg/plugins/__init__.py
package/PartSeg/plugins/itk_snap_save/__init__.py
package/PartSeg/plugins/modeling_save/__init__.py
package/PartSeg/plugins/modeling_save/save_modeling_data.py
package/PartSeg/plugins/napari_widgets/__init__.py
package/PartSeg/plugins/napari_widgets/_settings.py
package/PartSeg/plugins/napari_widgets/mask_create_widget.py
package/PartSeg/plugins/napari_widgets/measurement_widget.py
package/PartSeg/plugins/napari_widgets/roi_extraction_algorithms.py
package/PartSeg/plugins/napari_widgets/search_label_widget.py
package/PartSeg/plugins/napari_widgets/simple_measurement_widget.py
package/PartSeg/plugins/napari_widgets/utils.py
package/PartSeg/plugins/old_partseg/__init__.py
package/PartSeg/plugins/old_partseg/old_partseg.py
package/PartSegCore/__init__.py
package/PartSegCore/_old_json_hooks.py
package/PartSegCore/algorithm_describe_base.py
package/PartSegCore/autofit.py
package/PartSegCore/channel_class.py
package/PartSegCore/class_generator.py
package/PartSegCore/convex_fill.py
package/PartSegCore/custom_name_generate.py
package/PartSegCore/image_operations.py
package/PartSegCore/io_utils.py
package/PartSegCore/json_hooks.py
package/PartSegCore/mask_create.py
package/PartSegCore/mask_partition_utils.py
package/PartSegCore/project_info.py
package/PartSegCore/register.py
package/PartSegCore/roi_info.py
package/PartSegCore/state_store.py
package/PartSegCore/universal_const.py
package/PartSegCore/utils.py
package/PartSegCore/analysis/__init__.py
package/PartSegCore/analysis/algorithm_description.py
package/PartSegCore/analysis/analysis_utils.py
package/PartSegCore/analysis/calculate_pipeline.py
package/PartSegCore/analysis/calculation_plan.py
package/PartSegCore/analysis/io_utils.py
package/PartSegCore/analysis/load_functions.py
package/PartSegCore/analysis/measurement_base.py
package/PartSegCore/analysis/measurement_calculation.py
package/PartSegCore/analysis/save_functions.py
package/PartSegCore/analysis/batch_processing/__init__.py
package/PartSegCore/analysis/batch_processing/batch_backend.py
package/PartSegCore/analysis/batch_processing/parallel_backend.py
package/PartSegCore/color_image/__init__.py
package/PartSegCore/color_image/base_colors.py
package/PartSegCore/color_image/color_data.py
package/PartSegCore/image_transforming/__init__.py
package/PartSegCore/image_transforming/interpolate_image.py
package/PartSegCore/image_transforming/swap_time_stack.py
package/PartSegCore/image_transforming/transform_base.py
package/PartSegCore/mask/__init__.py
package/PartSegCore/mask/algorithm_description.py
package/PartSegCore/mask/history_utils.py
package/PartSegCore/mask/io_functions.py
package/PartSegCore/napari_plugins/__init__.py
package/PartSegCore/napari_plugins/load_image.py
package/PartSegCore/napari_plugins/load_mask_project.py
package/PartSegCore/napari_plugins/load_masked_image.py
package/PartSegCore/napari_plugins/load_roi_project.py
package/PartSegCore/napari_plugins/loader.py
package/PartSegCore/napari_plugins/save_mask_roi.py
package/PartSegCore/napari_plugins/save_tiff_layer.py
package/PartSegCore/plugins/__init__.py
package/PartSegCore/segmentation/__init__.py
package/PartSegCore/segmentation/algorithm_base.py
package/PartSegCore/segmentation/border_smoothing.py
package/PartSegCore/segmentation/mu_mid_point.py
package/PartSegCore/segmentation/noise_filtering.py
package/PartSegCore/segmentation/restartable_segmentation_algorithms.py
package/PartSegCore/segmentation/segmentation_algorithm.py
package/PartSegCore/segmentation/threshold.py
package/PartSegCore/segmentation/watershed.py
package/PartSegCore/sphinx/__init__.py
package/PartSegCore/sphinx/auto_parameters.py
package/PartSegImage/__init__.py
package/PartSegImage/channel_class.py
package/PartSegImage/image.py
package/PartSegImage/image_reader.py
package/PartSegImage/image_writer.py
package/PartSegImage/tifffile_fixes.py
package/tests/conftest.py
package/tests/test_PartSeg/__init__.py
package/tests/test_PartSeg/conftest.py
package/tests/test_PartSeg/test_analysis.py
package/tests/test_PartSeg/test_base.py
package/tests/test_PartSeg/test_base_widgets.py
package/tests/test_PartSeg/test_channel_control.py
package/tests/test_PartSeg/test_check_release.py
package/tests/test_PartSeg/test_colormap_create.py
package/tests/test_PartSeg/test_common_backend.py
package/tests/test_PartSeg/test_common_gui.py
package/tests/test_PartSeg/test_io.py
package/tests/test_PartSeg/test_label_choose.py
package/tests/test_PartSeg/test_launcher.py
package/tests/test_PartSeg/test_main_windows.py
package/tests/test_PartSeg/test_napari_image_view.py
package/tests/test_PartSeg/test_napari_widgets.py
package/tests/test_PartSeg/test_roi_analysis_batch.py
package/tests/test_PartSeg/test_sentry.py
package/tests/test_PartSeg/test_settings.py
package/tests/test_PartSeg/test_viewer.py
package/tests/test_PartSeg/test_window_import.py
package/tests/test_PartSeg/utils.py
package/tests/test_PartSeg/roi_analysis/__init__.py
package/tests/test_PartSeg/roi_analysis/test_advanced_window.py
package/tests/test_PartSeg/roi_analysis/test_image_view.py
package/tests/test_PartSeg/roi_analysis/test_main_window.py
package/tests/test_PartSeg/roi_analysis/test_profile_export.py
package/tests/test_PartSeg/roi_mask/__init__.py
package/tests/test_PartSeg/roi_mask/test_batch.py
package/tests/test_PartSeg/roi_mask/test_main_window.py
package/tests/test_PartSegCore/__init__.py
package/tests/test_PartSegCore/test_algorithm_describe_base.py
package/tests/test_PartSegCore/test_analysis_batch.py
package/tests/test_PartSegCore/test_base.py
package/tests/test_PartSegCore/test_class_generator.py
package/tests/test_PartSegCore/test_class_register.py
package/tests/test_PartSegCore/test_image_adjustment.py
package/tests/test_PartSegCore/test_io.py
package/tests/test_PartSegCore/test_json_hooks.py
package/tests/test_PartSegCore/test_mask_create.py
package/tests/test_PartSegCore/test_mask_partition.py
package/tests/test_PartSegCore/test_measurements.py
package/tests/test_PartSegCore/test_mso.py
package/tests/test_PartSegCore/test_napari_plugins.py
package/tests/test_PartSegCore/test_pipeline.py
package/tests/test_PartSegCore/test_segmentation.py
package/tests/test_PartSegCore/test_segmentation_proceses.py
package/tests/test_PartSegCore/test_smooth.py
package/tests/test_PartSegCore/test_utils.py
package/tests/test_PartSegCore/segmentation/__init__.py
package/tests/test_PartSegCore/segmentation/test_algorithm_base.py
package/tests/test_PartSegCore/segmentation/test_segmentation_algorithm.py
package/tests/test_PartSegCore/segmentation/test_threshold.py
package/tests/test_PartSegImage/__init__.py
package/tests/test_PartSegImage/test_image.py
package/tests/test_PartSegImage/test_image_reader.py
package/tests/test_PartSegImage/test_image_writer.py
package/tests/test_data/calculation_plan_0.9.2.3.json
package/tests/test_data/measurements_profile.json
package/tests/test_data/napari_measurements_profile.json
package/tests/test_data/ome.xsd.xml
package/tests/test_data/problematic_profile_dict.json
package/tests/test_data/sample_batch_output.xlsx
package/tests/test_data/segment_profile_0.9.2.3.json
package/tests/test_data/view_settings_v0.12.6.json
package/tests/test_data/workflow.json
package/tests/test_data/notebook/neuron_types_measurment.json
package/tests/test_data/notebook/neuron_types_segmentation.json
package/tests/test_data/notebook/segment_data.json
package/tests/test_data/old_saves/0.10.4/analysis/batch_plans_save.json
package/tests/test_data/old_saves/0.10.4/analysis/segmentation_pipeline_save.json
package/tests/test_data/old_saves/0.10.4/analysis/segmentation_profiles_save.json
package/tests/test_data/old_saves/0.10.4/analysis/segmentation_settings.json
package/tests/test_data/old_saves/0.10.4/analysis/statistic_profiles_save.json
package/tests/test_data/old_saves/0.10.4/analysis/view_settings.json
package/tests/test_data/old_saves/0.13.1/analysis/batch_plans_save.json
package/tests/test_data/old_saves/0.13.1/analysis/segmentation_pipeline_save.json
package/tests/test_data/old_saves/0.13.1/analysis/segmentation_profiles_save.json
package/tests/test_data/old_saves/0.13.1/analysis/segmentation_settings.json
package/tests/test_data/old_saves/0.13.1/analysis/statistic_profiles_save.json
package/tests/test_data/old_saves/0.13.1/analysis/view_settings.json
package/tests/test_data/old_saves/0.13.1/mask/segmentation_settings.json
package/tests/test_data/old_saves/0.13.1/mask/view_settings.json
package/tests/test_data/old_saves/0.13.14/analysis/batch_plans_save.json
package/tests/test_data/old_saves/0.13.14/analysis/segmentation_pipeline_save.json
package/tests/test_data/old_saves/0.13.14/analysis/segmentation_profiles_save.json
package/tests/test_data/old_saves/0.13.14/analysis/segmentation_settings.json
package/tests/test_data/old_saves/0.13.14/analysis/statistic_profiles_save.json
package/tests/test_data/old_saves/0.13.14/analysis/view_settings.json
package/tests/test_data/old_saves/0.13.14/mask/segmentation_settings.json
package/tests/test_data/old_saves/0.13.14/mask/view_settings.json
package/tests/test_data/old_saves/0.13.15/analysis/batch_plans_save.json
package/tests/test_data/old_saves/0.13.15/analysis/segmentation_pipeline_save.json
package/tests/test_data/old_saves/0.13.15/analysis/segmentation_profiles_save.json
package/tests/test_data/old_saves/0.13.15/analysis/segmentation_settings.json
package/tests/test_data/old_saves/0.13.15/analysis/statistic_profiles_save.json
package/tests/test_data/old_saves/0.13.15/analysis/view_settings.json
package/tests/test_data/old_saves/0.13.15/mask/segmentation_settings.json
package/tests/test_data/old_saves/0.13.15/mask/view_settings.json
package/tests/test_data/old_saves/0.8.6/analysis/batch_plans_save.json
package/tests/test_data/old_saves/0.8.6/analysis/segmentation_pipeline_save.json
package/tests/test_data/old_saves/0.8.6/analysis/segmentation_profiles_save.json
package/tests/test_data/old_saves/0.8.6/analysis/segmentation_settings.json
package/tests/test_data/old_saves/0.8.6/analysis/statistic_profiles_save.json
package/tests/test_data/old_saves/0.8.6/analysis/view_settings.json
requirements/dependabot_runtime.txt
requirements/requirements_ci.txt
requirements/requirements_dev.txt
requirements/requirements_pyinstaller.in
requirements/requirements_pyinstaller.txt
requirements/requirements_test.txt