VISUALIZATION TOOL
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	John A.P. Sekar (johnarul.sekar@gmail.com)

The visualize() action and the visualize.pl tool generate GML files. 
They are best viewed using yEd Graph Editor available for free at 
(http://www.yworks.com/en/products_yed_download.html).

Using visualize() action
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   visualize({type=>"TYPE"})                 
  
Using visualize.pl
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   perl visualize.pl --bngl BNGL --type TYPE

Allowed values for TYPE
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   conventional                         conventional rule visualization
   compact                              compact rule visualization (using graph operation nodes)
   regulatory                           rule-derived regulatory graph
   opts                                 options template for regulatory graph
   contactmap                           contact map
   reaction_network                     reaction network
  
Getting help
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Using the visualize() action, try:
    visualize({help=>1})
	
Using visualize.pl, try:
	perl visualize.pl --help

If you have any questions about using this tool, please email us at bionetgen.help@gmail.com
