HISTORY.rst
LICENSE
MANIFEST.in
Makefile
README.rst
dev-requirements.txt
requirements.txt
setup.cfg
setup.py
test-requirements.txt
galaxy/__init__.py
galaxy/project_galaxy_tool_util.py
galaxy/tool_util/__init__.py
galaxy/tool_util/edam_util.py
galaxy/tool_util/fetcher.py
galaxy/tool_util/lint.py
galaxy/tool_util/loader.py
galaxy/tool_util/loader_directory.py
galaxy/tool_util/output_checker.py
galaxy/tool_util/provided_metadata.py
galaxy/tool_util/biotools/__init__.py
galaxy/tool_util/biotools/interface.py
galaxy/tool_util/biotools/source.py
galaxy/tool_util/client/__init__.py
galaxy/tool_util/client/staging.py
galaxy/tool_util/cwl/__init__.py
galaxy/tool_util/cwl/cwltool_deps.py
galaxy/tool_util/cwl/parser.py
galaxy/tool_util/cwl/representation.py
galaxy/tool_util/cwl/runnable.py
galaxy/tool_util/cwl/runtime_actions.py
galaxy/tool_util/cwl/schema.py
galaxy/tool_util/cwl/util.py
galaxy/tool_util/deps/__init__.py
galaxy/tool_util/deps/brew_exts.py
galaxy/tool_util/deps/brew_util.py
galaxy/tool_util/deps/commands.py
galaxy/tool_util/deps/conda_compat.py
galaxy/tool_util/deps/conda_util.py
galaxy/tool_util/deps/container_classes.py
galaxy/tool_util/deps/containers.py
galaxy/tool_util/deps/dependencies.py
galaxy/tool_util/deps/docker_util.py
galaxy/tool_util/deps/dockerfiles.py
galaxy/tool_util/deps/installable.py
galaxy/tool_util/deps/requirements.py
galaxy/tool_util/deps/singularity_util.py
galaxy/tool_util/deps/views.py
galaxy/tool_util/deps/container_resolvers/__init__.py
galaxy/tool_util/deps/container_resolvers/explicit.py
galaxy/tool_util/deps/container_resolvers/mulled.py
galaxy/tool_util/deps/mulled/__init__.py
galaxy/tool_util/deps/mulled/_cli.py
galaxy/tool_util/deps/mulled/get_tests.py
galaxy/tool_util/deps/mulled/invfile.lua
galaxy/tool_util/deps/mulled/mulled_build.py
galaxy/tool_util/deps/mulled/mulled_build_channel.py
galaxy/tool_util/deps/mulled/mulled_build_files.py
galaxy/tool_util/deps/mulled/mulled_build_tool.py
galaxy/tool_util/deps/mulled/mulled_hash.py
galaxy/tool_util/deps/mulled/mulled_list.py
galaxy/tool_util/deps/mulled/mulled_search.py
galaxy/tool_util/deps/mulled/mulled_update_singularity_containers.py
galaxy/tool_util/deps/mulled/util.py
galaxy/tool_util/deps/resolvers/__init__.py
galaxy/tool_util/deps/resolvers/brewed_tool_shed_packages.py
galaxy/tool_util/deps/resolvers/conda.py
galaxy/tool_util/deps/resolvers/default_conda_mapping.yml
galaxy/tool_util/deps/resolvers/galaxy_packages.py
galaxy/tool_util/deps/resolvers/homebrew.py
galaxy/tool_util/deps/resolvers/lmod.py
galaxy/tool_util/deps/resolvers/modules.py
galaxy/tool_util/deps/resolvers/resolver_mixins.py
galaxy/tool_util/deps/resolvers/tool_shed_packages.py
galaxy/tool_util/deps/resolvers/unlinked_tool_shed_packages.py
galaxy/tool_util/linters/__init__.py
galaxy/tool_util/linters/_util.py
galaxy/tool_util/linters/citations.py
galaxy/tool_util/linters/command.py
galaxy/tool_util/linters/cwl.py
galaxy/tool_util/linters/general.py
galaxy/tool_util/linters/help.py
galaxy/tool_util/linters/inputs.py
galaxy/tool_util/linters/outputs.py
galaxy/tool_util/linters/stdio.py
galaxy/tool_util/linters/tests.py
galaxy/tool_util/linters/xml_order.py
galaxy/tool_util/locations/__init__.py
galaxy/tool_util/locations/dockstore.py
galaxy/tool_util/locations/file.py
galaxy/tool_util/locations/http.py
galaxy/tool_util/parser/__init__.py
galaxy/tool_util/parser/cwl.py
galaxy/tool_util/parser/factory.py
galaxy/tool_util/parser/interface.py
galaxy/tool_util/parser/output_actions.py
galaxy/tool_util/parser/output_collection_def.py
galaxy/tool_util/parser/output_objects.py
galaxy/tool_util/parser/stdio.py
galaxy/tool_util/parser/util.py
galaxy/tool_util/parser/xml.py
galaxy/tool_util/parser/yaml.py
galaxy/tool_util/toolbox/__init__.py
galaxy/tool_util/toolbox/base.py
galaxy/tool_util/toolbox/integrated_panel.py
galaxy/tool_util/toolbox/panel.py
galaxy/tool_util/toolbox/parser.py
galaxy/tool_util/toolbox/tags.py
galaxy/tool_util/toolbox/watcher.py
galaxy/tool_util/toolbox/filters/__init__.py
galaxy/tool_util/toolbox/filters/examples.py.sample
galaxy/tool_util/toolbox/lineages/__init__.py
galaxy/tool_util/toolbox/lineages/factory.py
galaxy/tool_util/toolbox/lineages/interface.py
galaxy/tool_util/toolbox/views/__init__.py
galaxy/tool_util/toolbox/views/definitions.py
galaxy/tool_util/toolbox/views/edam.py
galaxy/tool_util/toolbox/views/interface.py
galaxy/tool_util/toolbox/views/sources.py
galaxy/tool_util/toolbox/views/static.py
galaxy/tool_util/unittest_utils/__init__.py
galaxy/tool_util/unittest_utils/sample_data.py
galaxy/tool_util/verify/__init__.py
galaxy/tool_util/verify/interactor.py
galaxy/tool_util/verify/script.py
galaxy/tool_util/verify/test_config.sample.yml
galaxy/tool_util/verify/test_data.py
galaxy/tool_util/verify/wait.py
galaxy/tool_util/verify/asserts/__init__.py
galaxy/tool_util/verify/asserts/_util.py
galaxy/tool_util/verify/asserts/archive.py
galaxy/tool_util/verify/asserts/hdf5.py
galaxy/tool_util/verify/asserts/size.py
galaxy/tool_util/verify/asserts/tabular.py
galaxy/tool_util/verify/asserts/text.py
galaxy/tool_util/verify/asserts/xml.py
galaxy/tool_util/xsd/LICENSE
galaxy/tool_util/xsd/README.md
galaxy/tool_util/xsd/galaxy.jxb
galaxy/tool_util/xsd/galaxy.xsd
galaxy_tool_util.egg-info/PKG-INFO
galaxy_tool_util.egg-info/SOURCES.txt
galaxy_tool_util.egg-info/dependency_links.txt
galaxy_tool_util.egg-info/entry_points.txt
galaxy_tool_util.egg-info/not-zip-safe
galaxy_tool_util.egg-info/requires.txt
galaxy_tool_util.egg-info/top_level.txt
scripts/commit_version.py
scripts/new_version.py
scripts/print_version_for_release.py
tests/__init__.py
tests/tool_util/__init__.py
tests/tool_util/test_conda_resolution.py
tests/tool_util/test_container_resolution.py
tests/tool_util/test_cwl_util.py
tests/tool_util/test_edam_util.py
tests/tool_util/test_output_checker.py
tests/tool_util/test_parsing.py
tests/tool_util/test_required_files.py
tests/tool_util/test_resolution_cache.py
tests/tool_util/test_tool_deps.py
tests/tool_util/test_tool_linters.py
tests/tool_util/test_tool_loader.py
tests/tool_util/test_toolbox_view_parsing.py
tests/tool_util/test_toolbox_view_sources.py
tests/tool_util/test_util.py
tests/tool_util/test_verify.py
tests/tool_util/test_verify_script.py
tests/tool_util/test_wait.py
tests/tool_util/util.py
tests/tool_util/biotools/__init__.py
tests/tool_util/biotools/_util.py
tests/tool_util/biotools/test_edam_parsing.py
tests/tool_util/biotools/test_metadata_source.py
tests/tool_util/biotools/mock_content/data/bwa/bwa.biotools.json
tests/tool_util/mulled/__init__.py
tests/tool_util/mulled/test_get_tests.py
tests/tool_util/mulled/test_mulled_build.py
tests/tool_util/mulled/test_mulled_build_files.py
tests/tool_util/mulled/test_mulled_list.py
tests/tool_util/mulled/test_mulled_search.py
tests/tool_util/mulled/test_mulled_update_singularity_containers.py
tests/tool_util/mulled/test_mulled_util.py
tests/tool_util/tool_directories/r-tool-dir/my_script.R
tests/tool_util/tool_directories/r-tool-dir/other_script.R
tests/tool_util/toolbox/__init__.py
tests/tool_util/toolbox/test_tool_panel.py
tests/tool_util/toolbox/test_toolbox_filters.py
tests/tool_util/toolbox/test_watcher.py
tests/tool_util/toolbox/filter_modules/__init__.py
tests/tool_util/toolbox/filter_modules/filtermod.py
tests/tool_util/verify/test_asserts.py