Metadata-Version: 2.1
Name: gisaid
Version: 1.0.5b0
Summary: Simplified & efficient GISAID interactions.
Home-page: https://github.com/greysonlalonde/gisaid-uploader
Author: Greyson R. LaLonde
Author-email: greyson.r.lalonde@wmich.edu
License: MIT
Download-URL: https://github.com/greysonlalonde/gisaid-uploader/archive/1.0.5b0.tar.gz
Description: gisaid-uploader
        ===========================
        [![alt text](https://img.shields.io/badge/pypi-1.0.4b0-blue)](https://pypi.org/project/gisaid/) [![alt text](https://img.shields.io/badge/license-MIT-green)](https://github.com/greysonlalonde/gisaid-uploader/blob/main/LICENSE)
          
         Simplified & efficient GISAID interactions.
        
          
        <u><b>** This package is in development **</b></u>
        <br>
        <br>
        Features to be added soon:
        - STARLIMS REST API support for pipelines
        - GISAID API download functionality
        
        ---
        
        1. Register for a [GISAID](https://www.gisaid.org/registration/register/) account
        
        2. Email GISAID & request a client ID  
          
          
        Installation:
        ```python
            >>> pip install gisaid
        ```
        
        Authenticate once: 
        
        ```python
            >>> import gisaid as gs
            >>> gs.GiSaid(authenticate=True, client_id="foo",
            >>>              username="bar", password="foobar", filename="authfile.json")
            "Authentication successful"
        ```
        
        
        CSV + fasta file:
        
        ```python
            >>> import gisaid as gs
            >>> x = gs.GiSaid("upload.csv", "fasta.fa")
            >>> x.upload()
            "93 Successful Uploads"
            "15 Failed Uploads"
        ```
        
        
        Collated CSV:
        
        ```python
            >>> import gisaid as gs
            >>> x = gs.GiSaid("collated", "upload.csv")
            >>> x.upload()
            "93 Successful Uploads"
        ```
        
        Upload to a SQL database:
        
        ```python
            >>> import gisaid as gs
            >>> table_name = "foobar"
            >>> method = "append"
            >>> x = gs.GiSaid("upload.csv", "fasta.fa")
            >>> x.upload_sql(table_name, method, conn)
           
        ```
        
Platform: UNKNOWN
Description-Content-Type: text/markdown
