Metadata-Version: 2.1
Name: gencove
Version: 2.4.6
Summary: Gencove API and CLI tool
Home-page: http://docs.gencove.com
Author: Tomaz Berisa
License: Apache 2.0
Description: # The Gencove CLI
        
        [![PyPI Latest Release](https://img.shields.io/pypi/v/gencove.svg)](https://pypi.org/project/gencove/)
        [![License](https://img.shields.io/pypi/l/gencove.svg)](https://github.com/gncv/gencove-cli/blob/master/LICENSE)
        
        ## What is Gencove?
        
        Gencove is a high-throughput, cost-effective platform for genome sequencing and analysis, enabling a wide array of genomics applications across industries. Furthermore, it is the only enterprise analytics platform for low-pass whole genome sequencing (lpWGS).
        
        
        The Gencove command-line interface (CLI) can be used to easily access the Gencove platform.
        
        ## Main Features
        
        It is most often used for:
        * [Uploading FASTQ files](https://docs.gencove.com/main/the-gencove-cli/#uploading-fastq-files) for analysis
        * [Downloading analysis results](https://docs.gencove.com/main/the-gencove-cli/#downloading-deliverables) which include the following:
          * Sequence (`.fastq.gz`)
          * Alignment (`.bam`, `.bai`)
          * Imputation (`.vcf.gz`, `.vcf.gz.tbi`, `.vcf.gz.csi`)
        * [Assigning metadata](https://docs.gencove.com/main/the-gencove-cli/#assigning-sample-metadata) to Gencove samples
        
        Before filing a bug report, please refer to the following [link](https://docs.gencove.com/main/the-gencove-cli/#filing-a-bug-report-for-the-cli). Bugs should be reported [here](https://resources.gencove.com/hc/en-us/requests/new).
        
        ## Installation
        ```
        # install via PyPI
        pip install gencove
        
        # updating to latest version
        pip install -U gencove
        ```
        
        ## Documentation
        
        Online documentation (with examples) is available at [docs.gencove.com](https://docs.gencove.com/main/introduction/)
        
        API reference for publicly available endpoints: [API Reference](https://api.gencove.com/api/v2/docs/)
        
        Comprehensive CLI Documentation available: [CLI Reference](https://docs.gencove.com/cli/)
        
Platform: UNKNOWN
Requires-Python: >=3.6
Description-Content-Type: text/markdown
