LICENSE
MANIFEST.in
README.md
setup.cfg
setup.py
versioneer.py
src/scip/__init__.py
src/scip/_version.py
src/scip/main.py
src/scip.egg-info/PKG-INFO
src/scip.egg-info/SOURCES.txt
src/scip.egg-info/dependency_links.txt
src/scip.egg-info/entry_points.txt
src/scip.egg-info/requires.txt
src/scip.egg-info/top_level.txt
src/scip/export/__init__.py
src/scip/export/anndata.py
src/scip/export/parquet.py
src/scip/features/__init__.py
src/scip/features/bbox.py
src/scip/features/intensity.py
src/scip/features/shape.py
src/scip/features/texture.py
src/scip/filter/__init__.py
src/scip/filter/threshold.py
src/scip/illumination_correction/__init__.py
src/scip/illumination_correction/jones_2006.py
src/scip/loading/__init__.py
src/scip/loading/czi.py
src/scip/loading/multiframe_tiff.py
src/scip/loading/tiff.py
src/scip/loading/util.py
src/scip/loading/zarr.py
src/scip/masking/__init__.py
src/scip/masking/circle.py
src/scip/masking/sobel.py
src/scip/masking/spot.py
src/scip/masking/threshold.py
src/scip/masking/watershed.py
src/scip/normalization/__init__.py
src/scip/normalization/quantile_normalization.py
src/scip/projection/__init__.py
src/scip/projection/op.py
src/scip/segmentation/__init__.py
src/scip/segmentation/cellpose.py
src/scip/segmentation/watershed_dapi.py
src/scip/utils/__init__.py
src/scip/utils/logging.yml
src/scip/utils/util.py
test/test_cli.py
test/test_main.py