.gitignore
LICENSE
README.md
deploy_commands.sh
logo.png
setup.py
GReNaDIne.egg-info/PKG-INFO
GReNaDIne.egg-info/SOURCES.txt
GReNaDIne.egg-info/dependency_links.txt
GReNaDIne.egg-info/requires.txt
GReNaDIne.egg-info/top_level.txt
docker/Dockerfile
docker/requirements.txt
docker/test.py
docs/Makefile
docs/source/conf.py
docs/source/grenadine.Evaluation.rst
docs/source/grenadine.Inference.rst
docs/source/grenadine.Preprocessing.rst
docs/source/grenadine.rst
docs/source/index.rst
docs/source/modules.rst
docs/source/_static/logo_grenadine.png
docs/source/_static/logo_grenadine_white.png
grenadine/__init__.py
grenadine/Evaluation/__init__.py
grenadine/Evaluation/evaluation.py
grenadine/Inference/__init__.py
grenadine/Inference/classification_predictors.py
grenadine/Inference/inference.py
grenadine/Inference/regression_predictors.py
grenadine/Inference/statistical_predictors.py
grenadine/Preprocessing/__init__.py
grenadine/Preprocessing/discretization.py
grenadine/Preprocessing/rnaseq_normalization.py
grenadine/Preprocessing/standard_preprocessing.py
grenadine/Visualisation/__init__.py
grenadine/Visualisation/visualisation.py
tutorials/DREAM5_NetworkInference_GoldStandard_Network3 - E. coli.tsv
tutorials/Infer_dream5_E_coli_GRN_using_ComplementBayes.ipynb
tutorials/Infer_dream5_E_coli_GRN_using_GENIE3.ipynb
tutorials/Infer_dream5_E_coli_GRN_using_SVM.ipynb
tutorials/net3_expression_data.tsv
tutorials/net3_gene_ids.tsv
tutorials/net3_transcription_factors.tsv
tutorials/ranking_abs_spearmanr_coef.csv
tutorials/test_evaluation.ipynb