Metadata-Version: 2.1
Name: simsalabim
Version: 0.2.0
Summary: Simple Interface for MS Applications
Home-page: https://github.com/kusterlab/SIMSI-Transfer
License: Apache-2.0
Keywords: mass spectrometry,proteomics
Author: Matthew The
Author-email: matthew.the@tum.de
Requires-Python: >=3.9,<4.0
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.9
Requires-Dist: numpy (>=1.23.1,<2.0.0)
Requires-Dist: psims (>=1.0.1,<2.0.0)
Requires-Dist: pyteomics (>=4.5.3,<5.0.0)
Project-URL: Repository, https://github.com/kusterlab/SIMSI-Transfer
Description-Content-Type: text/markdown

# SIMSALABIM: Simple Interface for MS Applications

## Installation

### With ``pip``

```
pip install simsalabim
```

### From source

```
git clone https://github.com/MatthewThe/simsalabim.git
cd simsalabim
pip install .
```


## Usage

### apl to mzML conversion

The `simsalabim.convert` module automatically detects the output format based on the file extension, e.g. to convert to mzML name the output file `spectra.mzML`.

```
python -m simsalabim.split_apl <mq_andromeda_folder> --output_dir <output_dir>
python -m simsalabim.convert <apl_file> --output_fn <mzml_file>
```


