Metadata-Version: 2.1
Name: tibanna
Version: 1.0.0b12
Summary: Tibanna runs portable pipelines (in CWL/WDL) on the AWS Cloud.
Home-page: http://github.com/4dn-dcic/tibanna
Author: 4DN Team at Harvard Medical School
Author-email: duplexa@gmail.com, jeremy_johnson@hms.harvard.edu,carl_vitzthum@hms.harvard.edu, Michele_Berselli@hms.harvard.edu
License: MIT
Description: # Tibanna
        
        [![Python 3.6](https://img.shields.io/badge/python-3.6-blue.svg)](https://www.python.org/downloads/release/python-360/) [![Build Status](https://travis-ci.org/4dn-dcic/tibanna.svg?branch=master)](https://travis-ci.org/4dn-dcic/tibanna) [![Code Quality](https://api.codacy.com/project/badge/Grade/d2946b5bc0704e5c9a4893426a7e0314)](https://www.codacy.com/app/4dn/tibanna?utm_source=github.com&amp;utm_medium=referral&amp;utm_content=4dn-dcic/tibanna&amp;utm_campaign=Badge_Grade) [![Test Coverage](https://api.codacy.com/project/badge/Coverage/d2946b5bc0704e5c9a4893426a7e0314)](https://www.codacy.com/app/4dn/tibanna?utm_source=github.com&amp;utm_medium=referral&amp;utm_content=4dn-dcic/tibanna&amp;utm_campaign=Badge_Coverage) [![Documentation Status](https://readthedocs.org/projects/tibanna/badge/?version=latest)](https://tibanna.readthedocs.io/en/latest/?badge=latest)
        
        ***
        
        Tibanna runs portable pipelines (in CWL/WDL/Snakemake/shell) on the AWS Cloud.
        
        <br>
        
        Install Tibanna.
        ```bash
        pip install tibanna
        ```
        
        <br>
        
        Use CLI to set up the cloud component and run workflow.
        ```bash
        # Deploy Unicorn to the Cloud (Unicorn = serverless scheduler/resource allocator).
        tibanna deploy_unicorn --usergroup=mygroup
        
        # Run CWL/WDL workflow on the Cloud.
        tibanna run_workflow --input-json=myrun.json
        ```
        
        <br>
        
        Alternatively, use Python API.
        
        ```python
        from tibanna.core import API
        
        # Deploy Unicorn to the Cloud.
        API().deploy_unicorn(usergroup='mygroup')
        
        # Run CWL/WDL workflow on the Cloud.
        API().run_workflow(input_json='myrun.json')
        ```
        
        <br>
        
        ---
        Note: Starting `0.8.2`, Tibanna supports local CWL/WDL files as well as shell commands and Snakemake workflows.
        
        Note2: Python2.7 support is deprecated now (`0.7.0` or after)! Please switch to Python3.6!
        
        Note3: Starting `0.8.0`, one no longer needs to `git clone` the Tibanna repo. 
        * Please switch from `invoke <command>` to `tibanna <command>`! 
        * We also renovated the Python API as an inheritable class to allow development around tibanna.
        
        Note4:  Tibanna_4dn (extension of Tibanna) is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna_4dn has moved to its own Github repo since version `0.10.0`.
        
        Nore5: For more details, see Tibanna [**Documentation**](http://tibanna.readthedocs.io/en/latest).
        * Also check out our [**paper in _Bioinformatics_**](https://doi.org/10.1093/bioinformatics/btz379).
        * A preprint can also be found on [**biorxiv**](https://www.biorxiv.org/content/10.1101/440974v3).
        
        
Platform: UNKNOWN
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: POSIX :: Linux
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Description-Content-Type: text/markdown
