#!/bin/bash
if [ $# -ne 3 ]; then
    echo "Usage:"
    echo "    $0 in.bed out.gtf source"
    echo ""
    echo "Convert detailed bed format to GTF format"
    exit
fi
bed=$1
gtf=$2
src=$3
#>&2 echo "bedToGenePred $bed /dev/stdout | genePredToGtf file /dev/stdin -source=$src $gtf"
bedToGenePred $bed /dev/stdout | genePredToGtf file /dev/stdin -source=$src $gtf
