MANIFEST.in
README.md
setup.py
SigProfilerTopography/Topography.py
SigProfilerTopography/__init__.py
SigProfilerTopography/version.py
SigProfilerTopography.egg-info/PKG-INFO
SigProfilerTopography.egg-info/SOURCES.txt
SigProfilerTopography.egg-info/dependency_links.txt
SigProfilerTopography.egg-info/not-zip-safe
SigProfilerTopography.egg-info/requires.txt
SigProfilerTopography.egg-info/top_level.txt
SigProfilerTopography/lib/epigenomics/ENCFF065FJK_H3K9me3_breast_epithelium.bed
SigProfilerTopography/lib/epigenomics/ENCFF065TIH_H3K4me3_breast_epithelium.bed
SigProfilerTopography/lib/epigenomics/ENCFF154XFN_H3K27ac_breast_epithelium.bed
SigProfilerTopography/lib/epigenomics/ENCFF291WFP_H3K27me3_breast_epithelium.bed
SigProfilerTopography/lib/epigenomics/ENCFF336DDM_H3K4me1_breast_epithelium.bed
SigProfilerTopography/lib/epigenomics/ENCFF906MJM_H3K36me3_breast_epithelium.bed
SigProfilerTopography/lib/replication/GSM923442_hg19_wgEncodeUwRepliSeqMcf7PkRep1.bed
SigProfilerTopography/lib/replication/GSM923442_hg19_wgEncodeUwRepliSeqMcf7ValleysRep1.bed
SigProfilerTopography/lib/replication/GSM923442_hg19_wgEncodeUwRepliSeqMcf7WaveSignalRep1.wig
SigProfilerTopography/lib/ucscgenome/hg19ChromSizesDict.txt
SigProfilerTopography/lib/ucscgenome/hg38ChromSizesDict.txt
SigProfilerTopography/lib/ucscgenome/mm10ChromSizesDict.txt
SigProfilerTopography/lib/ucscgenome/mm9ChromSizesDict.txt
SigProfilerTopography/source/__init__.py
SigProfilerTopography/source/commons/TopographyCommons.py
SigProfilerTopography/source/commons/__init__.py
SigProfilerTopography/source/nucleosomeoccupancy/ChrBasedSignalArrays.py
SigProfilerTopography/source/nucleosomeoccupancy/NucleosomeOccupancyAnalysis.py
SigProfilerTopography/source/nucleosomeoccupancy/PlotChrBasedSignalArrays.py
SigProfilerTopography/source/nucleosomeoccupancy/__init__.py
SigProfilerTopography/source/plotting/OccupancyAverageSignalFigures.py
SigProfilerTopography/source/plotting/ProcessivityFigures.py
SigProfilerTopography/source/plotting/ReplicationTimeNormalizedMutationDensityFigures.py
SigProfilerTopography/source/plotting/TranscriptionReplicationStrandBiasFigures.py
SigProfilerTopography/source/plotting/__init__.py
SigProfilerTopography/source/processivity/ProcessivityAnalysis.py
SigProfilerTopography/source/processivity/__init__.py
SigProfilerTopography/source/replicationstrandbias/ReplicationStrandBiasAnalysis.py
SigProfilerTopography/source/replicationstrandbias/__init__.py
SigProfilerTopography/source/replicationtime/ReplicationTimeAnalysis.py
SigProfilerTopography/source/replicationtime/__init__.py
SigProfilerTopography/source/transcriptionstrandbias/TranscriptionStrandBiasAnalysis.py
SigProfilerTopography/source/transcriptionstrandbias/__init__.py