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.coveragerc
.gitignore
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.style.yapf
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LICENSE
MANIFEST.in
Makefile
README.md
config.json
github_deploy_key_jni_skan.enc
readthedocs.yml
requirements.txt
setup.cfg
setup.py
.github/workflows/build-docs.yml
.github/workflows/deploy-docs.yml
.github/workflows/make-release.yml
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benchmarks/.gitattributes
benchmarks/bench_skan.py
benchmarks/infected3.npz
doc/Makefile
doc/citing.rst
doc/complete_analysis.ipynb
doc/complete_analysis.rst
doc/conf.py
doc/faq.ipynb
doc/faq.rst
doc/getting_started.ipynb
doc/getting_started.rst
doc/gui.rst
doc/index.rst
doc/install.rst
doc/make.bat
doc/publications.bib
doc/_static/gui-screenshot.png
doc/api/api.rst
doc/api/skan.csr.rst
doc/api/skan.draw.rst
doc/api/skan.pipe.rst
doc/api/skan.pre.rst
doc/example-data/inf1.tif
doc/example-data/inf2.tif
doc/example-data/rbc1.tif
doc/example-data/rbc2.tif
doc/release-notes/index.rst
doc/release-notes/release-latest.md
doc/release-notes/release-v0.10.0.md
doc/release-notes/release-v0.9.md
requirements/default.txt
requirements/doc.txt
requirements/test.txt
src/skan/__init__.py
src/skan/_testdata.py
src/skan/csr.py
src/skan/draw.py
src/skan/image_stats.py
src/skan/io.py
src/skan/nputil.py
src/skan/pipe.py
src/skan/pre.py
src/skan/summary_utils.py
src/skan.egg-info/PKG-INFO
src/skan.egg-info/SOURCES.txt
src/skan.egg-info/dependency_links.txt
src/skan.egg-info/not-zip-safe
src/skan.egg-info/requires.txt
src/skan.egg-info/top_level.txt
src/skan/test/__init__.py
src/skan/test/test_csr.py
src/skan/test/test_draw.py
src/skan/test/test_io.py
src/skan/test/test_pipe.py
src/skan/test/test_pre.py
src/skan/test/test_prune.py
src/skan/test/test_skeleton_class.py
src/skan/test/test_summary_utils.py
src/skan/test/data/retic.tif
src/skan/test/data/skeleton.tif