.gitbook.yaml
.gitignore
LICENSE.txt
README.md
SUMMARY.md
setup.cfg
setup.py
.gitbook/assets/alt_3 (1).png
.gitbook/assets/alt_3.png
.gitbook/assets/alt_5 (1).png
.gitbook/assets/alt_5.png
.gitbook/assets/exon_skipping (1).png
.gitbook/assets/exon_skipping.png
.gitbook/assets/intron_retention (1).png
.gitbook/assets/intron_retention.png
.gitbook/assets/output_10_0.png
.gitbook/assets/output_13_0.png
.gitbook/assets/output_15_0.png
.gitbook/assets/output_16_0.png
.gitbook/assets/output_18_0.png
.gitbook/assets/output_23_0.png
.gitbook/assets/output_27_0.png
.gitbook/assets/output_32_0.png
.gitbook/assets/output_34_0.png
.gitbook/assets/output_36_0.png
.gitbook/assets/output_37_0.png
.gitbook/assets/output_39_0.png
.gitbook/assets/output_5_0.png
.gitbook/assets/output_8_0.png
.gitbook/assets/swan_logo.png
.gitbook/assets/teaching_1 (1).png
.gitbook/assets/teaching_1.png
.gitbook/assets/teaching_10 (1).png
.gitbook/assets/teaching_10.png
.gitbook/assets/teaching_11 (1).png
.gitbook/assets/teaching_11.png
.gitbook/assets/teaching_3 (1).png
.gitbook/assets/teaching_3.png
.gitbook/assets/teaching_8 (1).png
.gitbook/assets/teaching_8.png
.gitbook/assets/teaching_9 (1).png
.gitbook/assets/teaching_9.png
code-documentation/swangraph.md
faqs/file_formats.md
faqs/understanding_swan_vis.md
figures/swan_logo.png
figures/teaching_2.png
figures/teaching_4.png
figures/teaching_5.png
figures/teaching_6.png
figures/teaching_7.png
swan_vis/__init__.py
swan_vis/graph.py
swan_vis/networkx_patch.py
swan_vis/nx_pylab.py
swan_vis/plottedgraph.py
swan_vis/report.py
swan_vis/swangraph.py
swan_vis/talon_utils.py
swan_vis/utils.py
swan_vis.egg-info/PKG-INFO
swan_vis.egg-info/SOURCES.txt
swan_vis.egg-info/dependency_links.txt
swan_vis.egg-info/entry_points.txt
swan_vis.egg-info/requires.txt
swan_vis.egg-info/top_level.txt
testing/Makefile
testing/README.txt
testing/test_adding_datasets.py
testing/test_find_interesting_genes.py
testing/test_graph.py
testing/test_merge_sgs.py
testing/test_plotting.py
testing/test_report.py
testing/test_splice_graph.py
testing/test_utils.py
testing/input_files/annot.gtf
testing/input_files/annot_2.gtf
testing/input_files/annot_3.gtf
testing/input_files/test_abundance.tsv
tutorials/Analysis tools.ipynb
tutorials/Getting started.ipynb
tutorials/README.md
tutorials/Visualization.ipynb
tutorials/analysis_tools.md
tutorials/getting_started.md
tutorials/visualization.md
tutorials/figures/adrm1_browser_ENSG00000130706.12_report.png
tutorials/figures/adrm1_novel_ENSG00000130706.12_report.png
tutorials/figures/adrm1_novel_ENSG00000130706.12_summary.png
tutorials/figures/adrm1_paper_novel_ENSG00000130706.12_report.png
tutorials/figures/multi_gene_ENSG00000130706.12_report.png
tutorials/figures/multi_gene_ENSG00000197746.13_report.png
tutorials/figures/my_gene_summary.png