Metadata-Version: 1.1
Name: scipion-em-facilities
Version: 3.0.0
Summary: Plugin for Cryo-EM facilities to be used within Scipion framework
Home-page: https://scipion-em.github.io/docs/docs/facilities/facilities.html
Author: J.M. De la Rosa Trevin, Roberto Marabini, David Maluenda
Author-email: scipion@cnb.csic.es
License: UNKNOWN
Description: ======================
        Scipion for facilities
        ======================
        
        +------------------+------------------+
        | stable: |stable| | devel: |devel|   |
        +------------------+------------------+
        
        .. |stable| image:: http://scipion-test.cnb.csic.es:9980/badges/facilities_prod.svg
        .. |devel| image:: http://scipion-test.cnb.csic.es:9980/badges/facilities_sdevel.svg
        
        'scipion-em-facilities' plugin allows to use different utils for cryo-EM facilities
        (like monitors) within the Scipion framework.
        
        Monitors are used to produce live analysis plots, generate reports or
        raise alerts when some problems are detected. A monitor example is the CTF-monitor,
        that checks the computed defocus values for each micrograph as they are generated.
        CTF-monitor may raise an alert if the defocus values are above or below certain thresholds.
        A special case of this monitors is the monitor summary which encapsulates the CTF Monitor,
        the system monitor and the movie gain monitor and continuously creates a report.
        
        This module contains protocols and utilities related with monitors.
        
        Please, check the `facilities documentation <https://scipion-em.github.io/docs/docs/facilities/facilities.html>`_
        for more details.
        
        
        Installation
        ------------
        
        You will need to use `Scipion 3.0 <https://scipion-em.github.io/docs/release-3.0.0/index.html>`_
        to be able to run these protocols. If you want to use the summary monitor with grafana
        you will need to create the file secrets.cfg in the directory defined by the variable EMFACILITIES_HOME
        (see the above mention web site for details).
        
        To install the plugin, you have two options:
        
        a) Stable version
        
        .. code-block::
        
           scipion3 installp -p scipion-em-facilities
        
        b) Developer's version
        
           * 1st. Download repository
        
           .. code-block::
        
              git clone https://github.com/scipion-em/scipion-em-facilities.git /path/to/scipion-em-facilities
        
           * 2nd. Install the plugin
        
           .. code-block::
        
              scipion3 installp -p /path/to/scipion-em-facilities --devel
        
        Testing
        -------
        
        To check the installation, simply run the following Scipion test:
        
        .. code-block::
        
          scipion3 test --grep emfacilities --mode modules --run
        
        If ``--run`` is not passed, it only shows the available tests to check.
        
Keywords: scipion cryoem imageprocessing scipion-3.0
Platform: UNKNOWN
Classifier: Development Status :: 2 - Pre-Alpha
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Topic :: Scientific/Engineering
