Metadata-Version: 2.1
Name: bioimage
Version: 0.0.8
Summary: bioimage - library to make working with biomedical images more comfortable
Home-page: UNKNOWN
Author: antonkulaga (Anton Kulaga)
Author-email: <antonkulaga@gmail.com>
License: UNKNOWN
Keywords: python,utils,files,bioimages,microscopy,imaging,numpy
Platform: UNKNOWN
Classifier: Development Status :: 2 - Pre-Alpha
Classifier: Intended Audience :: Developers
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Operating System :: Unix
Classifier: Operating System :: MacOS :: MacOS X
Classifier: Operating System :: Microsoft :: Windows
Description-Content-Type: text/markdown
License-File: LICENSE


# bioimage
Library for convenient handling of bioimages

Contains the following modules:

## io

Convenient file management, uses pims and pycomfort under the hood.
For example:
* load_bio_image(from_file: Path) that allows loading microscopy images
* load_frame(from_file: Path): that loads first frame of the microscopy image from the system path

## filters

Useful filters to process images.
For example:
* rolling ball filter to fix some issues on the background
* local_contrast filter that can be used together with thresholding to find boundaries of the objects
* gray2color that deals with fluorescent images

## comparisons

When you need to compare multiple conditions
For example:
* show_images that displays images from the whole folder as a grid plot
* folder_to_conditions that allows splitting images in the folder to multiple conditions based on their namings
* 

