.all-contributorsrc
.flake8
.gitignore
CODE_OF_CONDUCT.md
CONTRIBUTING.md
CONTRIBUTORS.md
Dockerfile-brian2
Dockerfile-netpyne
Dockerfile-neuron
Dockerfile-pyneuroml
LICENSE
MANIFEST.in
README.md
README.rst
biosimulators-brian2.json
biosimulators-jneuroml.json
biosimulators-netpyne.json
biosimulators-neuron.json
biosimulators-pyneuroml.json
requirements.optional.txt
requirements.txt
setup.cfg
setup.py
.github/workflows/ci.yml
biosimulators_pyneuroml/__init__.py
biosimulators_pyneuroml/_version.py
biosimulators_pyneuroml/core.py
biosimulators_pyneuroml/data_model.py
biosimulators_pyneuroml/utils.py
biosimulators_pyneuroml.egg-info/PKG-INFO
biosimulators_pyneuroml.egg-info/SOURCES.txt
biosimulators_pyneuroml.egg-info/dependency_links.txt
biosimulators_pyneuroml.egg-info/entry_points.txt
biosimulators_pyneuroml.egg-info/requires.txt
biosimulators_pyneuroml.egg-info/top_level.txt
biosimulators_pyneuroml/api/__init__.py
biosimulators_pyneuroml/api/brian2.py
biosimulators_pyneuroml/api/netpyne.py
biosimulators_pyneuroml/api/neuron.py
biosimulators_pyneuroml/api/pyneuroml.py
biosimulators_pyneuroml/cli/__init__.py
biosimulators_pyneuroml/cli/brian2.py
biosimulators_pyneuroml/cli/netpyne.py
biosimulators_pyneuroml/cli/neuron.py
biosimulators_pyneuroml/cli/pyneuroml.py
docs/.nojekyll
docs/about.html
docs/genindex.html
docs/index.html
docs/installation.html
docs/py-modindex.html
docs/search.html
docs/searchindex.js
docs/tutorial.html
docs-src/about.rst
docs-src/conf.py
docs-src/genindex.rst
docs-src/index.rst
docs-src/installation.rst
docs-src/requirements.txt
docs-src/tutorial.rst
docs-src/_static/biosimulators-logo.svg
docs-src/_static/css/biosimulators.css
docs-src/source/biosimulators_opencor.rst
docs/_static/alabaster.css
docs/_static/basic.css
docs/_static/biosimulators-logo.svg
docs/_static/custom.css
docs/_static/doctools.js
docs/_static/documentation_options.js
docs/_static/file.png
docs/_static/jquery-3.5.1.js
docs/_static/jquery.js
docs/_static/language_data.js
docs/_static/minus.png
docs/_static/plus.png
docs/_static/pygments.css
docs/_static/searchtools.js
docs/_static/underscore-1.13.1.js
docs/_static/underscore.js
docs/_static/webpack-macros.html
docs/_static/css/biosimulators.css
docs/_static/css/blank.css
docs/_static/css/index.c5995385ac14fb8791e8eb36b4908be2.css
docs/_static/css/index.ff1ffe594081f20da1ef19478df9384b.css
docs/_static/css/theme.css
docs/_static/js/index.1c5a1a01449ed65a7b51.js
docs/_static/js/index.be7d3bbb2ef33a8344ce.js
docs/_static/vendor/fontawesome/5.13.0/LICENSE.txt
docs/_static/vendor/fontawesome/5.13.0/css/all.min.css
docs/_static/vendor/fontawesome/5.13.0/webfonts/fa-brands-400.eot
docs/_static/vendor/fontawesome/5.13.0/webfonts/fa-brands-400.svg
docs/_static/vendor/fontawesome/5.13.0/webfonts/fa-brands-400.ttf
docs/_static/vendor/fontawesome/5.13.0/webfonts/fa-brands-400.woff
docs/_static/vendor/fontawesome/5.13.0/webfonts/fa-brands-400.woff2
docs/_static/vendor/fontawesome/5.13.0/webfonts/fa-regular-400.eot
docs/_static/vendor/fontawesome/5.13.0/webfonts/fa-regular-400.svg
docs/_static/vendor/fontawesome/5.13.0/webfonts/fa-regular-400.ttf
docs/_static/vendor/fontawesome/5.13.0/webfonts/fa-regular-400.woff
docs/_static/vendor/fontawesome/5.13.0/webfonts/fa-regular-400.woff2
docs/_static/vendor/fontawesome/5.13.0/webfonts/fa-solid-900.eot
docs/_static/vendor/fontawesome/5.13.0/webfonts/fa-solid-900.svg
docs/_static/vendor/fontawesome/5.13.0/webfonts/fa-solid-900.ttf
docs/_static/vendor/fontawesome/5.13.0/webfonts/fa-solid-900.woff
docs/_static/vendor/fontawesome/5.13.0/webfonts/fa-solid-900.woff2
docs/source/biosimulators_opencor.html
docs/source/biosimulators_pyneuroml.api.html
docs/source/biosimulators_pyneuroml.cli.html
docs/source/biosimulators_pyneuroml.html
tests/requirements.txt
tests/test_core_main.py
tests/test_data_model.py
tests/test_utils.py
tests/fixtures/KConductance.channel.nml
tests/fixtures/LEMS_NML2_Ex5_DetCell.omex
tests/fixtures/LEMS_NML2_Ex5_DetCell.xml
tests/fixtures/LeakConductance.channel.nml
tests/fixtures/NML2_SingleCompHHCell.nml
tests/fixtures/NaConductance.channel.nml
tests/fixtures/SED-ML generated by pnml/LEMS_NML2_Ex5_DetCell.sedml