setup.py
test/__init__.py
test/functional/__init__.py
test/functional/test_homologue_download.py
test/functional/test_standalone_prediction.py
test/helpers/__init__.py
test/helpers/helpers.py
test/unit/__init__.py
test/unit/test_clustering.py
test/unit/test_ncbi_parser.py
test/unit/test_ttest_features.py
thoipapy/__init__.py
thoipapy/common.py
thoipapy/predict.py
thoipapy/run.py
thoipapy/utils.py
thoipapy.egg-info/PKG-INFO
thoipapy.egg-info/SOURCES.txt
thoipapy.egg-info/dependency_links.txt
thoipapy.egg-info/requires.txt
thoipapy.egg-info/top_level.txt
thoipapy/ML_model/__init__.py
thoipapy/ML_model/deployment_helper2.py
thoipapy/ML_model/train_model.py
thoipapy/ML_model/tune.py
thoipapy/clustering/__init__.py
thoipapy/clustering/pairwise_aln_similarity_matrix.py
thoipapy/experimental_data/__init__.py
thoipapy/experimental_data/add_experimental_data_to_train_set.py
thoipapy/experimental_data/closest_heavy_atom_dist.py
thoipapy/experimental_data/convert_bind_data_to_csv.py
thoipapy/experimental_data/remove_hetero_contacts.py
thoipapy/experimental_data/ttest_features.py
thoipapy/feature_importance/__init__.py
thoipapy/feature_importance/anova.py
thoipapy/feature_importance/ensemble_rfe.py
thoipapy/feature_importance/mean_decrease_accuracy.py
thoipapy/feature_importance/mean_decrease_impurity.py
thoipapy/feature_importance/merge.py
thoipapy/feature_importance/plots.py
thoipapy/feature_importance/remove_duplicates.py
thoipapy/features/__init__.py
thoipapy/features/combine_features.py
thoipapy/features/entropy.py
thoipapy/features/freecontact.py
thoipapy/features/lipophilicity.py
thoipapy/features/lips.py
thoipapy/features/motifs.py
thoipapy/features/normalise_features.py
thoipapy/features/phobius.py
thoipapy/features/physical_parameters.py
thoipapy/features/preddimer_tmdock.py
thoipapy/features/pssm.py
thoipapy/features/rate4site.py
thoipapy/features/relative_position.py
thoipapy/figs/__init__.py
thoipapy/figs/calc_PREDDIMER_TMDOCK_closedist.py
thoipapy/figs/combine_BOcurve_files.py
thoipapy/figs/create_BOcurve_files.py
thoipapy/figs/create_heatmap_from_merge_file.py
thoipapy/figs/fig_utils.py
thoipapy/figs/retrospective.py
thoipapy/homologues/NCBI_download.py
thoipapy/homologues/NCBI_parser.py
thoipapy/homologues/__init__.py
thoipapy/other/__init__.py
thoipapy/other/get_tmp_lists.py
thoipapy/other/output_parse.py
thoipapy/other/send_email.py
thoipapy/other/sine_curve_fit.py
thoipapy/other/validation_deprecated/__init__.py
thoipapy/other/validation_deprecated/validation_deprecated.py
thoipapy/setting/__init__.py
thoipapy/setting/deployment_helper.py
thoipapy/validation/__init__.py
thoipapy/validation/auc.py
thoipapy/validation/bocurve.py
thoipapy/validation/combine_mult_predictors.py
thoipapy/validation/feature_selection.py
thoipapy/validation/figs.py
thoipapy/validation/gather.py
thoipapy/validation/indiv_validation.py
thoipapy/validation/leave_one_out.py
thoipapy/validation/multiple_predictors.py
thoipapy/validation/precision_recall.py
thoipapy/validation/random_interface.py
thoipapy/validation/roc.py
thoipapy/validation/tenfold.py
thoipapy/validation/testset_trainset.py