README.md
setup.py
phylofisher/__init__.py
phylofisher/apply_to_db.py
phylofisher/config.py
phylofisher/fisher.py
phylofisher/forest.py
phylofisher/help_formatter.py
phylofisher/informant.py
phylofisher/install_deps.py
phylofisher/matrix_constructor.py
phylofisher/prep_final_dataset.py
phylofisher/select_orthologs.py
phylofisher/select_taxa.py
phylofisher/sgt_constructor.py
phylofisher/sgt_constructor.smk
phylofisher/tools.py
phylofisher/working_dataset_constructor.py
phylofisher.egg-info/PKG-INFO
phylofisher.egg-info/SOURCES.txt
phylofisher.egg-info/dependency_links.txt
phylofisher.egg-info/requires.txt
phylofisher.egg-info/top_level.txt
phylofisher/utilities/SR4_class_recoder.py
phylofisher/utilities/__init__.py
phylofisher/utilities/aa_comp_calculator.py
phylofisher/utilities/astral_runner.py
phylofisher/utilities/backup_restoration.py
phylofisher/utilities/bipartition_examiner.py
phylofisher/utilities/build_database.py
phylofisher/utilities/explore_database.py
phylofisher/utilities/fast_site_remover.py
phylofisher/utilities/fast_taxa_remover.py
phylofisher/utilities/genetic_code_examiner.py
phylofisher/utilities/heterotachy.py
phylofisher/utilities/mammal_modeler.py
phylofisher/utilities/purge.py
phylofisher/utilities/random_resampler.py
phylofisher/utilities/rtc_binner.py
phylofisher/utilities/taxon_collapser.py