anndata==0.7.6
click==8.0.3
# deepcell==0.11.0  # install manually first, to avoid version conflicts
fcswrite==0.6.1
h5py==3.2.1  # cellprofiler 4.2.1 requires 3.2.1 (note: deepcell 0.11.0 requires tensorflow ~=2.5.1, which requires ~=3.1.0)
imageio==2.10.2
networkx==2.6.3
numpy==1.21.4  # note: deepcell 0.11.0 requires <1.20.0
pandas==1.3.4
pyyaml==6.0
readimc==0.4.2
scikit-image==0.18.3
scipy==1.7.1
tifffile==2021.11.2
xtiff==0.7.7
