Metadata-Version: 2.1
Name: rmlst_api
Version: 0.1.4
Summary: API to perform rMLST on PubMLST.org
Home-page: https://github.com/domenico-simone/rmlst_api
Author-email: Domenico Simone <dome.simone@gmail.com>
License: UNKNOWN
Project-URL: Homepage, https://github.com/domenico-simone/rmlst_api
Project-URL: Bug Tracker, https://github.com/domenico-simone/rmlst_api/issues
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Requires-Python: <3.10,>3.6
Description-Content-Type: text/markdown
License-File: LICENSE

# rmlst_api

Run rmlst API through python script for species identification of a bacterial assembly.

```bash
usage: rmlst.py [-h] -i INPUT [-l LOG] [--output_tab OUTPUT_TAB]
                [--output_json OUTPUT_JSON]

optional arguments:
  -h, --help            show this help message and exit
  -i INPUT, --input INPUT
                        assembly file
  -l LOG, --log LOG     log file. default is <input>_rmlst.log
  --output_tab OUTPUT_TAB
                        rMLST tab output. default is <input>_rmlst.tab
  --output_json OUTPUT_JSON
                        rMLST json output. default is <input>_rmlst.json
```

API source: https://pubmlst.org/species-id/species-identification-via-api.


