CMakeLists.txt
LICENSE
MANIFEST.in
README.md
build.sh
requirements.txt
setup.py
docker/Dockerfile
docker/pepper_wrapper.sh
img/.DS_Store
img/PEPPER_chemistry.png
img/PEPPER_error_rate.png
img/PEPPER_pipeline.svg
img/pip_logo.svg
img/terminal.svg
pepper/__init__.py
pepper/pepper.py
pepper/pepper_train.py
pepper/version.py
pepper/modules/python/AlignmentSummarizer.py
pepper/modules/python/DataStore.py
pepper/modules/python/DataStorePredict.py
pepper/modules/python/FileManager.py
pepper/modules/python/ImageGenerationUI.py
pepper/modules/python/Options.py
pepper/modules/python/Stitch.py
pepper/modules/python/StitchV2.py
pepper/modules/python/TextColor.py
pepper/modules/python/__init__.py
pepper/modules/python/call_consensus.py
pepper/modules/python/download_model.py
pepper/modules/python/make_images.py
pepper/modules/python/perform_stitch.py
pepper/modules/python/polish.py
pepper/modules/python/run_hyperband.py
pepper/modules/python/test_models.py
pepper/modules/python/train_models.py
pepper/modules/python/helper/__init__.py
pepper/modules/python/helper/generate_pileup_from_reads.py
pepper/modules/python/helper/hyperband_result.py
pepper/modules/python/models/ModelHander.py
pepper/modules/python/models/Seq2Seq_atn.py
pepper/modules/python/models/__init__.py
pepper/modules/python/models/dataloader.py
pepper/modules/python/models/dataloader_predict.py
pepper/modules/python/models/hyperband.py
pepper/modules/python/models/predict.py
pepper/modules/python/models/predict_distributed_cpu.py
pepper/modules/python/models/predict_distributed_gpu.py
pepper/modules/python/models/resnet.py
pepper/modules/python/models/simple_model.py
pepper/modules/python/models/test.py
pepper/modules/python/models/train.py
pepper/modules/python/models/train_distributed.py
pepper_polish.egg-info/PKG-INFO
pepper_polish.egg-info/SOURCES.txt
pepper_polish.egg-info/dependency_links.txt
pepper_polish.egg-info/entry_points.txt
pepper_polish.egg-info/not-zip-safe
pepper_polish.egg-info/requires.txt
pepper_polish.egg-info/top_level.txt