Metadata-Version: 2.1
Name: ngsfragments
Version: 1.0.0
Summary: Python package for Next Generation Sequencing fragment manipulation
Home-page: https://github.com/kylessmtih/ngsfragments
Author: Kyle S. Smith
Author-email: kyle.smith@stjude.org
License: GPL2
Description: # Next Generation Sequencing fragment manipulation
        
        [![Build Status](https://travis-ci.org/kylessmith/NGSfragments.svg?branch=master)](https://travis-ci.org/kylessmith/NGSfragments) [![PyPI version](https://badge.fury.io/py/NGSfragments.svg)](https://badge.fury.io/py/NGSfragments)
        
        This is a Python package for easy and efficient manipulation
        of Next Generation Sequencing reads.
        
        
        ## Install
        
        If you dont already have numpy and scipy installed, it is best to download
        `Anaconda`, a python distribution that has them included.  
        ```
            https://continuum.io/downloads
        ```
        
        Dependencies can be installed by:
        
        ```
            pip install -r requirements.txt
        ```
        
        PyPI install, presuming you have all its requirements installed:
        ```
            pip install NGSfragments
        ```
        
        ## Usage
        
        ```python
        from NGSfragments import fragments
        import numpy as np
        
        # Create data
        frags = fragments("test_bam.bam", verbose=True)
        ```
        
Keywords: next generation sequencing fragment
Platform: POSIX
Platform: UNIX
Platform: MacOS
Classifier: Development Status :: 4 - Beta
Classifier: Environment :: Console
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: Operating System :: POSIX :: Linux
Classifier: Programming Language :: Cython
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.4
Classifier: Topic :: Scientific/Engineering
Classifier: Topic :: Scientific/Engineering :: Mathematics
Classifier: Topic :: Software Development :: Libraries
Classifier: Topic :: Software Development :: Libraries :: Python Modules
Provides: ngsfragments
Description-Content-Type: text/markdown
