bedtools
configparser
dinamo
diskcache
feather-format
gadem
genomepy >=0.8.3
homer
ipywidgets  # Necessary for progress bar in Jupyter notebook
jinja2
logomaker
loguru
matplotlib >=2.0
meme >=5
ncurses
numpy
prosampler
pillow
pyarrow >=0.16.0
pybedtools
pysam
python
python-xxhash
pyyaml >=3.10
qnorm
scikit-learn >=0.23
scipy >=1.4.1
seaborn
statsmodels
tqdm >=4.27.0
trawler
ucsc-bigbedtobed
ucsc-genepredtobed
weeder
xdg
xgboost >=0.71
xxmotif
iteround

# development-specific
black=21.5b1  # same as in .pre-commit-config.yaml
flake8=3.9.2  # same as in .pre-commit-config.yaml
flake8-bugbear
pre-commit
pytest
pytest-cov
twine
