GimmeMotifs v0.13.1+200.g740911a.dirty

GimmeMotifs_1 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0024 2.14e-14
nynrCCAsyAGrkGGCrsyn	Database match

Significance and enrichment

gc enrichment 71.25 p-value 0.00 ROC_AUC 0.973 MNCP 9.470

Positional Preference Plot

(Fullscreen)

GimmeMotifs_2 (Gimme)

Motif and consensus

	GM.5.0.THAP_finger.0005 3.53e-04
CCAGCGmCCyCTrCwG	Database match

Significance and enrichment

gc enrichment 11.75 p-value 0.00 ROC_AUC 0.703 MNCP 3.095

Positional Preference Plot

(Fullscreen)

GimmeMotifs_3 (Gimme)

Motif and consensus

	GM.5.0.Mixed.0079 6.63e-04
CTGCCATCTTGTGGnGGmTy	Database match

Significance and enrichment

gc enrichment 9.25 p-value 0.00 ROC_AUC 0.652 MNCP 2.401

Positional Preference Plot

(Fullscreen)

GimmeMotifs_4 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0254 7.77e-16
CmTCTAGT	Database match

Significance and enrichment

gc enrichment 8.57 p-value 0.00 ROC_AUC 0.722 MNCP 3.064

Positional Preference Plot

(Fullscreen)

GimmeMotifs_5 (Gimme)

Motif and consensus

	GM.5.0.THAP_finger.0005 1.72e-06
GCGCTGCG	Database match

Significance and enrichment

gc enrichment 8.00 p-value 0.00 ROC_AUC 0.684 MNCP 2.305

Positional Preference Plot

(Fullscreen)

GimmeMotifs_6 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0243 5.31e-06
GGyGGCGCCG	Database match

Significance and enrichment

gc enrichment 3.50 p-value 0.00 ROC_AUC 0.623 MNCP 1.691

Positional Preference Plot

(Fullscreen)

GimmeMotifs_7 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0199 2.56e-08
CGGCAG	Database match

Significance and enrichment

gc enrichment 1.75 p-value 0.13 ROC_AUC 0.693 MNCP 1.806

Positional Preference Plot

(Fullscreen)

GimmeMotifs_8 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0283 2.13e-05
CTAGCGGC	Database match

Significance and enrichment

gc enrichment 10.24 p-value 0.00 ROC_AUC 0.682 MNCP 2.765

Positional Preference Plot

(Fullscreen)

GimmeMotifs_9 (Gimme)

Motif and consensus

	GM.5.0.HSF.0009 1.36e-09
ssAGCG	Database match

Significance and enrichment

gc enrichment 3.17 p-value 0.00 ROC_AUC 0.647 MNCP 1.689

Positional Preference Plot

(Fullscreen)

GimmeMotifs_10 (Gimme)

Motif and consensus

	GM.5.0.Mixed.0100 1.84e-12
GCGTTT	Database match

Significance and enrichment

gc enrichment 3.56 p-value 0.00 ROC_AUC 0.596 MNCP 1.459

Positional Preference Plot

(Fullscreen)

GimmeMotifs_11 (Gimme)

Motif and consensus

	GM.5.0.Unknown.0031 4.65e-10
CGCGCATGCG	Database match

Significance and enrichment

gc enrichment 2.75 p-value 0.01 ROC_AUC 0.595 MNCP 1.501

Positional Preference Plot

(Fullscreen)

GimmeMotifs_12 (Gimme)

Motif and consensus

	GM.5.0.Unknown.0183 4.11e-07
CnGCAGCA	Database match

Significance and enrichment

gc enrichment 1.32 p-value 0.25 ROC_AUC 0.561 MNCP 1.230

Positional Preference Plot

(Fullscreen)

GimmeMotifs_13 (Gimme)

Motif and consensus

	GM.5.0.Mixed.0096 1.29e-03
GCwGCwGCwGCwGCwGCw	Database match

Significance and enrichment

gc enrichment 2.25 p-value 0.03 ROC_AUC 0.550 MNCP 1.227

Positional Preference Plot

(Fullscreen)

GimmeMotifs_14 (Gimme)

Motif and consensus

	GM.5.0.bZIP.0032 0.00e+00
TGTGCAAA	Database match

Significance and enrichment

gc enrichment 2.20 p-value 0.02 ROC_AUC 0.550 MNCP 1.190

Positional Preference Plot

(Fullscreen)

Result Files

• Results
• Cluster report
• Weight matrices
• Parameters
• Log

Identified Motifs

• GimmeMotifs_1
• GimmeMotifs_2
• GimmeMotifs_3
• GimmeMotifs_4
• GimmeMotifs_5
• GimmeMotifs_6
• GimmeMotifs_7
• GimmeMotifs_8
• GimmeMotifs_9
• GimmeMotifs_10
• GimmeMotifs_11
• GimmeMotifs_12
• GimmeMotifs_13
• GimmeMotifs_14

Reference

Please cite:
van Heeringen, SJ and Veenstra, GJC, Bioinformatics.