.gitattributes
.gitignore
CHANGES
LICENSE
MANIFEST.in
README.md
setup.py
tobias_env.yaml
figures/BATF_footprint_comparison_all.png
figures/BATF_footprint_comparison_subsets.png
figures/BATF_heatmap.png
figures/IRF1_footprint.png
figures/atacorrect.png
figures/bindetect.png
figures/chr4-119628321-119629356.png
figures/chr4-163701830-163702617.png
figures/footprinting.png
figures/network.png
figures/tobias.png
tobias/TOBIAS.py
tobias/__init__.py
tobias/parsers.py
tobias.egg-info/PKG-INFO
tobias.egg-info/SOURCES.txt
tobias.egg-info/dependency_links.txt
tobias.egg-info/entry_points.txt
tobias.egg-info/not-zip-safe
tobias.egg-info/requires.txt
tobias.egg-info/top_level.txt
tobias/scripts/S3_Downloader.py
tobias/scripts/TFs2genesOfInterest.sh
tobias/scripts/cluster_sites_by_overlap.py
tobias/scripts/filter_important_factors.py
tobias/scripts/s3_tobias_data_config.yaml
tobias/tools/__init__.py
tobias/tools/atacorrect.py
tobias/tools/atacorrect_functions.py
tobias/tools/bindetect.py
tobias/tools/bindetect_functions.py
tobias/tools/cluster_tfbs.py
tobias/tools/create_network.py
tobias/tools/download_data.py
tobias/tools/filter_fragments.py
tobias/tools/format_motifs.py
tobias/tools/log2table.py
tobias/tools/maxpos.py
tobias/tools/merge_pdfs.py
tobias/tools/motif_clust.py
tobias/tools/plot_aggregate.py
tobias/tools/plot_changes.py
tobias/tools/plot_heatmap.py
tobias/tools/plot_tracks.py
tobias/tools/score_bed.py
tobias/tools/score_bigwig.py
tobias/tools/subsample_bam.py
tobias/tools/tfbscan.py
tobias/utils/__init__.py
tobias/utils/logger.py
tobias/utils/motifs.py
tobias/utils/ngs.c
tobias/utils/ngs.pyx
tobias/utils/regions.py
tobias/utils/sequences.c
tobias/utils/sequences.pyx
tobias/utils/signals.c
tobias/utils/signals.pyx
tobias/utils/utilities.py