.cproject
.gitignore
.gitmodules
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.pydevproject
CHANGELOG
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LICENSE
README.md
TODO.md
_config.yml
contributing.md
notes.md
setup.cfg
setup.py
time
time_no_bindings
.github/workflows/build_docs.yml
.github/workflows/build_package.yml
.settings/.gitignore
.settings/org.eclipse.core.resources.prefs
baggianalysis.egg-info/PKG-INFO
baggianalysis.egg-info/SOURCES.txt
baggianalysis.egg-info/dependency_links.txt
baggianalysis.egg-info/not-zip-safe
baggianalysis.egg-info/top_level.txt
docs/Makefile
docs/_config.yml
docs/conf.py
docs/index.md
docs/requirements.txt
docs/build/html/.buildinfo
docs/build/html/genindex.html
docs/build/html/index.html
docs/build/html/objects.inv
docs/build/html/search.html
docs/build/html/searchindex.js
docs/build/html/_sources/index.md.txt
docs/build/html/_sources/core/core.md.txt
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docs/build/html/extending/parser.html
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docs/core/exporters.md
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exec/CMakeLists.txt
exec/bop.py
exec/poresize.py
exec/test_feature.cpp
exec/test_feature.py
extern/glm/CMakeLists.txt
extern/glm/common.hpp
extern/glm/exponential.hpp
extern/glm/ext.hpp
extern/glm/fwd.hpp
extern/glm/geometric.hpp
extern/glm/glm.hpp
extern/glm/integer.hpp
extern/glm/mat2x2.hpp
extern/glm/mat2x3.hpp
extern/glm/mat2x4.hpp
extern/glm/mat3x2.hpp
extern/glm/mat3x3.hpp
extern/glm/mat3x4.hpp
extern/glm/mat4x2.hpp
extern/glm/mat4x3.hpp
extern/glm/mat4x4.hpp
extern/glm/matrix.hpp
extern/glm/packing.hpp
extern/glm/trigonometric.hpp
extern/glm/vec2.hpp
extern/glm/vec3.hpp
extern/glm/vec4.hpp
extern/glm/vector_relational.hpp
extern/glm/detail/_features.hpp
extern/glm/detail/_fixes.hpp
extern/glm/detail/_noise.hpp
extern/glm/detail/_swizzle.hpp
extern/glm/detail/_swizzle_func.hpp
extern/glm/detail/_vectorize.hpp
extern/glm/detail/compute_common.hpp
extern/glm/detail/compute_vector_relational.hpp
extern/glm/detail/func_common.inl
extern/glm/detail/func_common_simd.inl
extern/glm/detail/func_exponential.inl
extern/glm/detail/func_exponential_simd.inl
extern/glm/detail/func_geometric.inl
extern/glm/detail/func_geometric_simd.inl
extern/glm/detail/func_integer.inl
extern/glm/detail/func_integer_simd.inl
extern/glm/detail/func_matrix.inl
extern/glm/detail/func_matrix_simd.inl
extern/glm/detail/func_packing.inl
extern/glm/detail/func_packing_simd.inl
extern/glm/detail/func_trigonometric.inl
extern/glm/detail/func_trigonometric_simd.inl
extern/glm/detail/func_vector_relational.inl
extern/glm/detail/func_vector_relational_simd.inl
extern/glm/detail/glm.cpp
extern/glm/detail/qualifier.hpp
extern/glm/detail/setup.hpp
extern/glm/detail/type_float.hpp
extern/glm/detail/type_half.hpp
extern/glm/detail/type_half.inl
extern/glm/detail/type_mat2x2.hpp
extern/glm/detail/type_mat2x2.inl
extern/glm/detail/type_mat2x3.hpp
extern/glm/detail/type_mat2x3.inl
extern/glm/detail/type_mat2x4.hpp
extern/glm/detail/type_mat2x4.inl
extern/glm/detail/type_mat3x2.hpp
extern/glm/detail/type_mat3x2.inl
extern/glm/detail/type_mat3x3.hpp
extern/glm/detail/type_mat3x3.inl
extern/glm/detail/type_mat3x4.hpp
extern/glm/detail/type_mat3x4.inl
extern/glm/detail/type_mat4x2.hpp
extern/glm/detail/type_mat4x2.inl
extern/glm/detail/type_mat4x3.hpp
extern/glm/detail/type_mat4x3.inl
extern/glm/detail/type_mat4x4.hpp
extern/glm/detail/type_mat4x4.inl
extern/glm/detail/type_mat4x4_simd.inl
extern/glm/detail/type_quat.hpp
extern/glm/detail/type_quat.inl
extern/glm/detail/type_quat_simd.inl
extern/glm/detail/type_vec1.hpp
extern/glm/detail/type_vec1.inl
extern/glm/detail/type_vec2.hpp
extern/glm/detail/type_vec2.inl
extern/glm/detail/type_vec3.hpp
extern/glm/detail/type_vec3.inl
extern/glm/detail/type_vec4.hpp
extern/glm/detail/type_vec4.inl
extern/glm/detail/type_vec4_simd.inl
extern/glm/ext/matrix_clip_space.hpp
extern/glm/ext/matrix_clip_space.inl
extern/glm/ext/matrix_common.hpp
extern/glm/ext/matrix_common.inl
extern/glm/ext/matrix_double2x2.hpp
extern/glm/ext/matrix_double2x2_precision.hpp
extern/glm/ext/matrix_double2x3.hpp
extern/glm/ext/matrix_double2x3_precision.hpp
extern/glm/ext/matrix_double2x4.hpp
extern/glm/ext/matrix_double2x4_precision.hpp
extern/glm/ext/matrix_double3x2.hpp
extern/glm/ext/matrix_double3x2_precision.hpp
extern/glm/ext/matrix_double3x3.hpp
extern/glm/ext/matrix_double3x3_precision.hpp
extern/glm/ext/matrix_double3x4.hpp
extern/glm/ext/matrix_double3x4_precision.hpp
extern/glm/ext/matrix_double4x2.hpp
extern/glm/ext/matrix_double4x2_precision.hpp
extern/glm/ext/matrix_double4x3.hpp
extern/glm/ext/matrix_double4x3_precision.hpp
extern/glm/ext/matrix_double4x4.hpp
extern/glm/ext/matrix_double4x4_precision.hpp
extern/glm/ext/matrix_float2x2.hpp
extern/glm/ext/matrix_float2x2_precision.hpp
extern/glm/ext/matrix_float2x3.hpp
extern/glm/ext/matrix_float2x3_precision.hpp
extern/glm/ext/matrix_float2x4.hpp
extern/glm/ext/matrix_float2x4_precision.hpp
extern/glm/ext/matrix_float3x2.hpp
extern/glm/ext/matrix_float3x2_precision.hpp
extern/glm/ext/matrix_float3x3.hpp
extern/glm/ext/matrix_float3x3_precision.hpp
extern/glm/ext/matrix_float3x4.hpp
extern/glm/ext/matrix_float3x4_precision.hpp
extern/glm/ext/matrix_float4x2.hpp
extern/glm/ext/matrix_float4x2_precision.hpp
extern/glm/ext/matrix_float4x3.hpp
extern/glm/ext/matrix_float4x3_precision.hpp
extern/glm/ext/matrix_float4x4.hpp
extern/glm/ext/matrix_float4x4_precision.hpp
extern/glm/ext/matrix_projection.hpp
extern/glm/ext/matrix_projection.inl
extern/glm/ext/matrix_relational.hpp
extern/glm/ext/matrix_relational.inl
extern/glm/ext/matrix_transform.hpp
extern/glm/ext/matrix_transform.inl
extern/glm/ext/quaternion_common.hpp
extern/glm/ext/quaternion_common.inl
extern/glm/ext/quaternion_common_simd.inl
extern/glm/ext/quaternion_double.hpp
extern/glm/ext/quaternion_double_precision.hpp
extern/glm/ext/quaternion_exponential.hpp
extern/glm/ext/quaternion_exponential.inl
extern/glm/ext/quaternion_float.hpp
extern/glm/ext/quaternion_float_precision.hpp
extern/glm/ext/quaternion_geometric.hpp
extern/glm/ext/quaternion_geometric.inl
extern/glm/ext/quaternion_relational.hpp
extern/glm/ext/quaternion_relational.inl
extern/glm/ext/quaternion_transform.hpp
extern/glm/ext/quaternion_transform.inl
extern/glm/ext/quaternion_trigonometric.hpp
extern/glm/ext/quaternion_trigonometric.inl
extern/glm/ext/scalar_common.hpp
extern/glm/ext/scalar_common.inl
extern/glm/ext/scalar_constants.hpp
extern/glm/ext/scalar_constants.inl
extern/glm/ext/scalar_int_sized.hpp
extern/glm/ext/scalar_relational.hpp
extern/glm/ext/scalar_relational.inl
extern/glm/ext/scalar_uint_sized.hpp
extern/glm/ext/scalar_ulp.hpp
extern/glm/ext/scalar_ulp.inl
extern/glm/ext/vector_bool1.hpp
extern/glm/ext/vector_bool1_precision.hpp
extern/glm/ext/vector_bool2.hpp
extern/glm/ext/vector_bool2_precision.hpp
extern/glm/ext/vector_bool3.hpp
extern/glm/ext/vector_bool3_precision.hpp
extern/glm/ext/vector_bool4.hpp
extern/glm/ext/vector_bool4_precision.hpp
extern/glm/ext/vector_common.hpp
extern/glm/ext/vector_common.inl
extern/glm/ext/vector_double1.hpp
extern/glm/ext/vector_double1_precision.hpp
extern/glm/ext/vector_double2.hpp
extern/glm/ext/vector_double2_precision.hpp
extern/glm/ext/vector_double3.hpp
extern/glm/ext/vector_double3_precision.hpp
extern/glm/ext/vector_double4.hpp
extern/glm/ext/vector_double4_precision.hpp
extern/glm/ext/vector_float1.hpp
extern/glm/ext/vector_float1_precision.hpp
extern/glm/ext/vector_float2.hpp
extern/glm/ext/vector_float2_precision.hpp
extern/glm/ext/vector_float3.hpp
extern/glm/ext/vector_float3_precision.hpp
extern/glm/ext/vector_float4.hpp
extern/glm/ext/vector_float4_precision.hpp
extern/glm/ext/vector_int1.hpp
extern/glm/ext/vector_int1_precision.hpp
extern/glm/ext/vector_int2.hpp
extern/glm/ext/vector_int2_precision.hpp
extern/glm/ext/vector_int3.hpp
extern/glm/ext/vector_int3_precision.hpp
extern/glm/ext/vector_int4.hpp
extern/glm/ext/vector_int4_precision.hpp
extern/glm/ext/vector_relational.hpp
extern/glm/ext/vector_relational.inl
extern/glm/ext/vector_uint1.hpp
extern/glm/ext/vector_uint1_precision.hpp
extern/glm/ext/vector_uint2.hpp
extern/glm/ext/vector_uint2_precision.hpp
extern/glm/ext/vector_uint3.hpp
extern/glm/ext/vector_uint3_precision.hpp
extern/glm/ext/vector_uint4.hpp
extern/glm/ext/vector_uint4_precision.hpp
extern/glm/ext/vector_ulp.hpp
extern/glm/ext/vector_ulp.inl
extern/glm/gtc/bitfield.hpp
extern/glm/gtc/bitfield.inl
extern/glm/gtc/color_space.hpp
extern/glm/gtc/color_space.inl
extern/glm/gtc/constants.hpp
extern/glm/gtc/constants.inl
extern/glm/gtc/epsilon.hpp
extern/glm/gtc/epsilon.inl
extern/glm/gtc/integer.hpp
extern/glm/gtc/integer.inl
extern/glm/gtc/matrix_access.hpp
extern/glm/gtc/matrix_access.inl
extern/glm/gtc/matrix_integer.hpp
extern/glm/gtc/matrix_inverse.hpp
extern/glm/gtc/matrix_inverse.inl
extern/glm/gtc/matrix_transform.hpp
extern/glm/gtc/matrix_transform.inl
extern/glm/gtc/noise.hpp
extern/glm/gtc/noise.inl
extern/glm/gtc/packing.hpp
extern/glm/gtc/packing.inl
extern/glm/gtc/quaternion.hpp
extern/glm/gtc/quaternion.inl
extern/glm/gtc/quaternion_simd.inl
extern/glm/gtc/random.hpp
extern/glm/gtc/random.inl
extern/glm/gtc/reciprocal.hpp
extern/glm/gtc/reciprocal.inl
extern/glm/gtc/round.hpp
extern/glm/gtc/round.inl
extern/glm/gtc/type_aligned.hpp
extern/glm/gtc/type_precision.hpp
extern/glm/gtc/type_precision.inl
extern/glm/gtc/type_ptr.hpp
extern/glm/gtc/type_ptr.inl
extern/glm/gtc/ulp.hpp
extern/glm/gtc/ulp.inl
extern/glm/gtc/vec1.hpp
extern/glm/gtx/associated_min_max.hpp
extern/glm/gtx/associated_min_max.inl
extern/glm/gtx/bit.hpp
extern/glm/gtx/bit.inl
extern/glm/gtx/closest_point.hpp
extern/glm/gtx/closest_point.inl
extern/glm/gtx/color_encoding.hpp
extern/glm/gtx/color_encoding.inl
extern/glm/gtx/color_space.hpp
extern/glm/gtx/color_space.inl
extern/glm/gtx/color_space_YCoCg.hpp
extern/glm/gtx/color_space_YCoCg.inl
extern/glm/gtx/common.hpp
extern/glm/gtx/common.inl
extern/glm/gtx/compatibility.hpp
extern/glm/gtx/compatibility.inl
extern/glm/gtx/component_wise.hpp
extern/glm/gtx/component_wise.inl
extern/glm/gtx/dual_quaternion.hpp
extern/glm/gtx/dual_quaternion.inl
extern/glm/gtx/easing.hpp
extern/glm/gtx/easing.inl
extern/glm/gtx/euler_angles.hpp
extern/glm/gtx/euler_angles.inl
extern/glm/gtx/extend.hpp
extern/glm/gtx/extend.inl
extern/glm/gtx/extended_min_max.hpp
extern/glm/gtx/extended_min_max.inl
extern/glm/gtx/exterior_product.hpp
extern/glm/gtx/exterior_product.inl
extern/glm/gtx/fast_exponential.hpp
extern/glm/gtx/fast_exponential.inl
extern/glm/gtx/fast_square_root.hpp
extern/glm/gtx/fast_square_root.inl
extern/glm/gtx/fast_trigonometry.hpp
extern/glm/gtx/fast_trigonometry.inl
extern/glm/gtx/float_notmalize.inl
extern/glm/gtx/functions.hpp
extern/glm/gtx/functions.inl
extern/glm/gtx/gradient_paint.hpp
extern/glm/gtx/gradient_paint.inl
extern/glm/gtx/handed_coordinate_space.hpp
extern/glm/gtx/handed_coordinate_space.inl
extern/glm/gtx/hash.hpp
extern/glm/gtx/hash.inl
extern/glm/gtx/integer.hpp
extern/glm/gtx/integer.inl
extern/glm/gtx/intersect.hpp
extern/glm/gtx/intersect.inl
extern/glm/gtx/io.hpp
extern/glm/gtx/io.inl
extern/glm/gtx/log_base.hpp
extern/glm/gtx/log_base.inl
extern/glm/gtx/matrix_cross_product.hpp
extern/glm/gtx/matrix_cross_product.inl
extern/glm/gtx/matrix_decompose.hpp
extern/glm/gtx/matrix_decompose.inl
extern/glm/gtx/matrix_factorisation.hpp
extern/glm/gtx/matrix_factorisation.inl
extern/glm/gtx/matrix_interpolation.hpp
extern/glm/gtx/matrix_interpolation.inl
extern/glm/gtx/matrix_major_storage.hpp
extern/glm/gtx/matrix_major_storage.inl
extern/glm/gtx/matrix_operation.hpp
extern/glm/gtx/matrix_operation.inl
extern/glm/gtx/matrix_query.hpp
extern/glm/gtx/matrix_query.inl
extern/glm/gtx/matrix_transform_2d.hpp
extern/glm/gtx/matrix_transform_2d.inl
extern/glm/gtx/mixed_product.hpp
extern/glm/gtx/mixed_product.inl
extern/glm/gtx/norm.hpp
extern/glm/gtx/norm.inl
extern/glm/gtx/normal.hpp
extern/glm/gtx/normal.inl
extern/glm/gtx/normalize_dot.hpp
extern/glm/gtx/normalize_dot.inl
extern/glm/gtx/number_precision.hpp
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extern/glm/gtx/optimum_pow.hpp
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extern/glm/gtx/orthonormalize.hpp
extern/glm/gtx/orthonormalize.inl
extern/glm/gtx/perpendicular.hpp
extern/glm/gtx/perpendicular.inl
extern/glm/gtx/polar_coordinates.hpp
extern/glm/gtx/polar_coordinates.inl
extern/glm/gtx/projection.hpp
extern/glm/gtx/projection.inl
extern/glm/gtx/quaternion.hpp
extern/glm/gtx/quaternion.inl
extern/glm/gtx/range.hpp
extern/glm/gtx/raw_data.hpp
extern/glm/gtx/raw_data.inl
extern/glm/gtx/rotate_normalized_axis.hpp
extern/glm/gtx/rotate_normalized_axis.inl
extern/glm/gtx/rotate_vector.hpp
extern/glm/gtx/rotate_vector.inl
extern/glm/gtx/scalar_multiplication.hpp
extern/glm/gtx/scalar_relational.hpp
extern/glm/gtx/scalar_relational.inl
extern/glm/gtx/spline.hpp
extern/glm/gtx/spline.inl
extern/glm/gtx/std_based_type.hpp
extern/glm/gtx/std_based_type.inl
extern/glm/gtx/string_cast.hpp
extern/glm/gtx/string_cast.inl
extern/glm/gtx/texture.hpp
extern/glm/gtx/texture.inl
extern/glm/gtx/transform.hpp
extern/glm/gtx/transform.inl
extern/glm/gtx/transform2.hpp
extern/glm/gtx/transform2.inl
extern/glm/gtx/type_aligned.hpp
extern/glm/gtx/type_aligned.inl
extern/glm/gtx/type_trait.hpp
extern/glm/gtx/type_trait.inl
extern/glm/gtx/vec_swizzle.hpp
extern/glm/gtx/vector_angle.hpp
extern/glm/gtx/vector_angle.inl
extern/glm/gtx/vector_query.hpp
extern/glm/gtx/vector_query.inl
extern/glm/gtx/wrap.hpp
extern/glm/gtx/wrap.inl
extern/glm/simd/common.h
extern/glm/simd/exponential.h
extern/glm/simd/geometric.h
extern/glm/simd/integer.h
extern/glm/simd/matrix.h
extern/glm/simd/packing.h
extern/glm/simd/platform.h
extern/glm/simd/trigonometric.h
extern/glm/simd/vector_relational.h
extern/pybind11/.appveyor.yml
extern/pybind11/.gitignore
extern/pybind11/.gitmodules
extern/pybind11/.readthedocs.yml
extern/pybind11/.travis.yml
extern/pybind11/CMakeLists.txt
extern/pybind11/CONTRIBUTING.md
extern/pybind11/ISSUE_TEMPLATE.md
extern/pybind11/LICENSE
extern/pybind11/MANIFEST.in
extern/pybind11/README.md
extern/pybind11/setup.cfg
extern/pybind11/setup.py
extern/pybind11/include/pybind11/attr.h
extern/pybind11/include/pybind11/buffer_info.h
extern/pybind11/include/pybind11/cast.h
extern/pybind11/include/pybind11/chrono.h
extern/pybind11/include/pybind11/common.h
extern/pybind11/include/pybind11/complex.h
extern/pybind11/include/pybind11/eigen.h
extern/pybind11/include/pybind11/embed.h
extern/pybind11/include/pybind11/eval.h
extern/pybind11/include/pybind11/functional.h
extern/pybind11/include/pybind11/iostream.h
extern/pybind11/include/pybind11/numpy.h
extern/pybind11/include/pybind11/operators.h
extern/pybind11/include/pybind11/options.h
extern/pybind11/include/pybind11/pybind11.h
extern/pybind11/include/pybind11/pytypes.h
extern/pybind11/include/pybind11/stl.h
extern/pybind11/include/pybind11/stl_bind.h
extern/pybind11/include/pybind11/detail/class.h
extern/pybind11/include/pybind11/detail/common.h
extern/pybind11/include/pybind11/detail/descr.h
extern/pybind11/include/pybind11/detail/init.h
extern/pybind11/include/pybind11/detail/internals.h
extern/pybind11/include/pybind11/detail/typeid.h
extern/pybind11/pybind11/__init__.py
extern/pybind11/pybind11/__main__.py
extern/pybind11/pybind11/_version.py
extern/pybind11/tools/FindCatch.cmake
extern/pybind11/tools/FindEigen3.cmake
extern/pybind11/tools/FindPythonLibsNew.cmake
extern/pybind11/tools/check-style.sh
extern/pybind11/tools/libsize.py
extern/pybind11/tools/mkdoc.py
extern/pybind11/tools/pybind11Config.cmake.in
extern/pybind11/tools/pybind11Tools.cmake
extern/quickhull/.gitignore
extern/quickhull/ConvexHull.hpp
extern/quickhull/HalfEdgeMesh.hpp
extern/quickhull/MathUtils.hpp
extern/quickhull/QuickHull.hpp
extern/quickhull/README.md
extern/quickhull/Structs/Mesh.hpp
extern/quickhull/Structs/Plane.hpp
extern/quickhull/Structs/Pool.hpp
extern/quickhull/Structs/Ray.hpp
extern/quickhull/Structs/Vector3.hpp
extern/quickhull/Structs/VertexDataSource.hpp
extern/quickhull/Tests/CMakeLists.txt
extern/quickhull/Tests/QuickHullTests.cpp
extern/quickhull/Tests/QuickHullTests.hpp
extern/quickhull/Tests/main.cpp
extern/spdlog/.clang-format
extern/spdlog/.clang-tidy
extern/spdlog/.travis.yml
extern/spdlog/CMakeLists.txt
extern/spdlog/INSTALL
extern/spdlog/LICENSE
extern/spdlog/README.md
extern/spdlog/appveyor.yml
extern/spdlog/cmake/ide.cmake
extern/spdlog/cmake/pch.h.in
extern/spdlog/cmake/spdlog.pc.in
extern/spdlog/cmake/spdlogCPack.cmake
extern/spdlog/cmake/spdlogConfig.cmake.in
extern/spdlog/cmake/utils.cmake
extern/spdlog/cmake/version.rc.in
extern/spdlog/example/CMakeLists.txt
extern/spdlog/example/example.cpp
extern/spdlog/include/spdlog/async.h
extern/spdlog/include/spdlog/async_logger-inl.h
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extern/spdlog/include/spdlog/common-inl.h
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extern/spdlog/include/spdlog/formatter.h
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extern/spdlog/include/spdlog/logger-inl.h
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extern/spdlog/include/spdlog/pattern_formatter-inl.h
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extern/spdlog/include/spdlog/spdlog-inl.h
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extern/spdlog/include/spdlog/stopwatch.h
extern/spdlog/include/spdlog/tweakme.h
extern/spdlog/include/spdlog/version.h
extern/spdlog/include/spdlog/cfg/argv.h
extern/spdlog/include/spdlog/cfg/env.h
extern/spdlog/include/spdlog/cfg/helpers-inl.h
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extern/spdlog/include/spdlog/details/circular_q.h
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extern/spdlog/include/spdlog/details/mpmc_blocking_q.h
extern/spdlog/include/spdlog/details/null_mutex.h
extern/spdlog/include/spdlog/details/os-inl.h
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extern/spdlog/include/spdlog/details/periodic_worker-inl.h
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extern/spdlog/include/spdlog/details/registry-inl.h
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extern/spdlog/include/spdlog/details/synchronous_factory.h
extern/spdlog/include/spdlog/details/tcp_client-windows.h
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extern/spdlog/include/spdlog/details/thread_pool-inl.h
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extern/spdlog/include/spdlog/details/windows_include.h
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extern/spdlog/include/spdlog/sinks/syslog_sink.h
extern/spdlog/include/spdlog/sinks/systemd_sink.h
extern/spdlog/include/spdlog/sinks/tcp_sink.h
extern/spdlog/include/spdlog/sinks/win_eventlog_sink.h
extern/spdlog/include/spdlog/sinks/wincolor_sink-inl.h
extern/spdlog/include/spdlog/sinks/wincolor_sink.h
extern/spdlog/logos/jetbrains-variant-4.svg
extern/spdlog/scripts/extract_version.py
extern/spdlog/scripts/format.sh
extern/spdlog/src/async.cpp
extern/spdlog/src/cfg.cpp
extern/spdlog/src/color_sinks.cpp
extern/spdlog/src/file_sinks.cpp
extern/spdlog/src/fmt.cpp
extern/spdlog/src/spdlog.cpp
extern/spdlog/src/stdout_sinks.cpp
lib/CMakeLists.txt
lib/System.cpp
lib/System.h
lib/defs.h
lib/python_defs.h
lib/exporters/BaseExporter.cpp
lib/exporters/BaseExporter.h
lib/exporters/Cogli1Exporter.cpp
lib/exporters/Cogli1Exporter.h
lib/exporters/GenericOxDNAExporter.cpp
lib/exporters/GenericOxDNAExporter.h
lib/exporters/LAMMPSDataFileExporter.cpp
lib/exporters/LAMMPSDataFileExporter.h
lib/filters/BaseFilter.cpp
lib/filters/BaseFilter.h
lib/filters/FilterByFunction.cpp
lib/filters/FilterByFunction.h
lib/filters/FilterById.cpp
lib/filters/FilterById.h
lib/filters/FilterByReducingToCOM.cpp
lib/filters/FilterByReducingToCOM.h
lib/filters/FilterByType.cpp
lib/filters/FilterByType.h
lib/filters/FixParticlePath.cpp
lib/filters/FixParticlePath.h
lib/filters/MapParticles.cpp
lib/filters/MapParticles.h
lib/filters/SubtractCOM.cpp
lib/filters/SubtractCOM.h
lib/neighbour_finders/CutoffFinder.cpp
lib/neighbour_finders/CutoffFinder.h
lib/neighbour_finders/FixedNumberFinder.cpp
lib/neighbour_finders/FixedNumberFinder.h
lib/neighbour_finders/NeighbourFinder.cpp
lib/neighbour_finders/NeighbourFinder.h
lib/neighbour_finders/SANNFinder.cpp
lib/neighbour_finders/SANNFinder.h
lib/observables/BondOrderParameters.cpp
lib/observables/BondOrderParameters.h
lib/observables/ConvexHull.cpp
lib/observables/ConvexHull.h
lib/observables/FormFactor.cpp
lib/observables/FormFactor.h
lib/observables/MSD.cpp
lib/observables/MSD.h
lib/observables/PoreSize.cpp
lib/observables/PoreSize.h
lib/observables/StructureFactor.cpp
lib/observables/StructureFactor.h
lib/observables/interfaces/SystemObservable.h
lib/observables/interfaces/TrajectoryObservable.h
lib/parsers/BaseParser.cpp
lib/parsers/BaseParser.h
lib/parsers/GroParser.cpp
lib/parsers/GroParser.h
lib/parsers/LAMMPSDataFileParser.cpp
lib/parsers/LAMMPSDataFileParser.h
lib/parsers/LAMMPSDumpParser.cpp
lib/parsers/LAMMPSDumpParser.h
lib/parsers/LJKAParser.cpp
lib/parsers/LJKAParser.h
lib/parsers/OxDNAParser.cpp
lib/parsers/OxDNAParser.h
lib/parsers/oxDNA_topology_parsers/Default.cpp
lib/parsers/oxDNA_topology_parsers/Default.h
lib/parsers/oxDNA_topology_parsers/TSP.cpp
lib/parsers/oxDNA_topology_parsers/TSP.h
lib/particles/Particle.cpp
lib/particles/Particle.h
lib/particles/ParticleSet.cpp
lib/particles/ParticleSet.h
lib/python/__init__.py
lib/python/bindings.cpp
lib/python/make_install_setup.py
lib/python/python_glm.h
lib/topology/Topology.cpp
lib/topology/Topology.h
lib/topology/TopologyParsers.cpp
lib/topology/TopologyParsers.h
lib/trajectories/BaseTrajectory.cpp
lib/trajectories/BaseTrajectory.h
lib/trajectories/FullTrajectory.cpp
lib/trajectories/FullTrajectory.h
lib/trajectories/LazyTrajectory.cpp
lib/trajectories/LazyTrajectory.h
lib/utils/CellLists.cpp
lib/utils/CellLists.h
lib/utils/Logger.cpp
lib/utils/Logger.h
lib/utils/Random.cpp
lib/utils/Random.h
lib/utils/filesystem.cpp
lib/utils/filesystem.h
lib/utils/natural_sort.h
lib/utils/strings.cpp
lib/utils/strings.h
tests/TestSuite.py
tests/test_list_file.txt
tests/LAMMPS/add_particles_to_network_chains.py
tests/LAMMPS/add_test_list.txt
tests/LAMMPS/final_conf.dat
tests/LAMMPS/final_conf_correct.dat
tests/LAMMPS/initial_conf.dat
tests/single_particle/oxDNA/msd.dat
tests/single_particle/oxDNA/msd.py
tests/single_particle/oxDNA/msd_correct.dat
tests/single_particle/oxDNA/msd_test_list.txt
tests/single_particle/oxDNA/topology.dat
tests/single_particle/oxDNA/trajectory.dat