.gitattributes
.gitignore
.travis.yml
LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.py
example/example.py
example/contacts/CEMBA191126_9J_1-CEMBA191126_9J_2-A10-AD006.3C.contact.tsv.gz
example/contacts/CEMBA191126_9J_1-CEMBA191126_9J_2-A10-AD007.3C.contact.tsv.gz
example/contacts/CEMBA191126_9J_1-CEMBA191126_9J_2-A10-AD008.3C.contact.tsv.gz
example/contacts/CEMBA191126_9J_1-CEMBA191126_9J_2-A10-AD010.3C.contact.tsv.gz
example/contacts/CEMBA191126_9J_1-CEMBA191126_9J_2-A10-AD012.3C.contact.tsv.gz
example/contacts/CEMBA191126_9J_1-CEMBA191126_9J_2-A11-AD001.3C.contact.tsv.gz
example/contacts/CEMBA191126_9J_1-CEMBA191126_9J_2-A11-AD002.3C.contact.tsv.gz
example/contacts/CEMBA191126_9J_1-CEMBA191126_9J_2-A11-AD004.3C.contact.tsv.gz
example/contacts/CEMBA191126_9J_1-CEMBA191126_9J_2-A11-AD006.3C.contact.tsv.gz
example/contacts/CEMBA191126_9J_1-CEMBA191126_9J_2-A11-AD008.3C.contact.tsv.gz
example/contacts/CEMBA191126_9J_1-CEMBA191126_9J_2-A11-AD010.3C.contact.tsv.gz
example/contacts/contact_table.txt
example/contacts/mm10.main.nochrM.chrom.sizes
example/contacts/test_scool.sh
example/plot/Introduction.pdf
example/plot/Introduction.png
example/plot/humanM1_cell_8491_100k-01.png
example/plot/humanM1_cell_8491_100k.pdf
example/plot/humanPFC_cell_4238_100k-01.png
example/plot/humanPFC_cell_4238_100k.pdf
schicluster/__init__.py
schicluster/__main__.py
schicluster/call_domain.R
schicluster/schicluster.py
schicluster.egg-info/PKG-INFO
schicluster.egg-info/SOURCES.txt
schicluster.egg-info/dependency_links.txt
schicluster.egg-info/entry_points.txt
schicluster.egg-info/requires.txt
schicluster.egg-info/top_level.txt
schicluster/dev/__init__.py
schicluster/dev/concat_cell.py
schicluster/dev/generate_matrix.py
schicluster/dev/imputecell.py
schicluster/dev/loop_sc.py
schicluster/dev/merge_cell.py
schicluster/draft/comp_concatcell_chr.py
schicluster/draft/comp_cpg_cell.py
schicluster/draft/domain_concatcell_chr.py
schicluster/draft/domain_insulation_cell.py
schicluster/draft/domain_topdom_cell.R
schicluster/draft/embed_concatcell_chr.py
schicluster/draft/embed_mergechr.py
schicluster/draft/generatematrix_cell.py
schicluster/draft/impute_cell.py
schicluster/draft/loop_bkg_cell.py
schicluster/draft/loop_mergechr.py
schicluster/draft/loop_sumcell_chr.py
schicluster/scool/__init__.py